From 39cdf16e87f83451bfbb52c5e3145e6cabe1c754 Mon Sep 17 00:00:00 2001
From: basti <sb@pus.de>
Date: Thu, 3 Jan 2019 17:19:39 +0100
Subject: [PATCH] renamed ID field to gene_id in response to: #29

---
 bin/3.1_create_gtf/Modules/ucsc/ucsc.py | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/bin/3.1_create_gtf/Modules/ucsc/ucsc.py b/bin/3.1_create_gtf/Modules/ucsc/ucsc.py
index a554a4d..da086ef 100644
--- a/bin/3.1_create_gtf/Modules/ucsc/ucsc.py
+++ b/bin/3.1_create_gtf/Modules/ucsc/ucsc.py
@@ -58,9 +58,9 @@ def find_ID(self, line):
         ref_id = re.search(pattern, line).group()
         splitted = ref_id.split(":")
         if len(splitted) == 2:
-            returnstring = str(splitted[0])+' "'+str(splitted[1])+'"'
+            returnstring = 'gene_id "'+str(splitted[1])+'"'
         else:
-            returnstring = 'ID '+'"NA"'
+            returnstring = 'gene_id "NA"'
 
         return returnstring