diff --git a/README.md b/README.md index c04ff5b..d8ac4eb 100644 --- a/README.md +++ b/README.md @@ -20,7 +20,7 @@ source activate masterenv ## Quick Start ```console -nextflow run pipeline.nf --input [INPUT-file] --genome_fasta [path to file] --jaspar_db [path to motif database as meme-file] --config uropa.config --conda [path to conda enviroment] +nextflow run pipeline.nf --input [INPUT-file] --bed [INPUT-bed] --genome_fasta [path to file] --jaspar_db [path to motif database as meme-file] --config uropa.config --conda [path to conda enviroment] ``` ## Parameter