From 49c356b55bdfe6a21de6097bf9126c2b1acb6c5f Mon Sep 17 00:00:00 2001 From: basti Date: Tue, 4 Dec 2018 14:43:54 +0100 Subject: [PATCH] Changed Paths --- bin/Modules/Ensembl/ActivityCategorizer.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/bin/Modules/Ensembl/ActivityCategorizer.py b/bin/Modules/Ensembl/ActivityCategorizer.py index e29ac4b..d8dfa42 100644 --- a/bin/Modules/Ensembl/ActivityCategorizer.py +++ b/bin/Modules/Ensembl/ActivityCategorizer.py @@ -33,8 +33,8 @@ def read_config(self, organism, wd): c_dict = {} path_to_config = os.path.join(wd, "../config/celltypes_"+organism+".json") - with open(path_to_config) as input: - data = json.loads(input.read()) + with open(path_to_config) as input_file: + data = json.loads(input_file.read()) for x in data: c_dict[x["type"]] = x["alias_ensembl"] self.folderlist.extend(x["alias_ensembl"])