From 4acc20f8e761bf74e4363381f04176dc33a43f86 Mon Sep 17 00:00:00 2001 From: JannikHamp Date: Wed, 9 Jan 2019 10:13:10 +0100 Subject: [PATCH] documentation changes --- bin/1.2_filter_motifs/compareBed.sh | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/bin/1.2_filter_motifs/compareBed.sh b/bin/1.2_filter_motifs/compareBed.sh index 1840ba8..73bfa8f 100644 --- a/bin/1.2_filter_motifs/compareBed.sh +++ b/bin/1.2_filter_motifs/compareBed.sh @@ -125,7 +125,7 @@ then echo " -max --max maximum size of footprints; default is 80" echo " -o --output output path/file ; default dir current directory and filename is newMotifs.bed and newMotifs.bed.fasta" echo " -h --help shows this help message" - echo " -p --path the path where the required scripts merge.R and maxScore.R are stored. Default: same path as this scripts path" + echo " -p --path the path where the required script compareBed_runinfo.R is stored. Default: same path as this scripts path" exit 0 fi @@ -139,7 +139,7 @@ echo fasta: $fasta \(required\) echo min: $min echo max: $max echo output: $output -echo path of scripts: $path +echo relative path of subscript: $path # check required parameters if [ -z $data ] || [ -z $motifs ] || [ -z $fasta ] @@ -190,7 +190,7 @@ done if [ $all_empty == true ] then echo ERROR - echo All motiffiles were empty! + echo All motiffiles have less than 2 lines! echo Fix motiffiles and try again. exit 1 fi