From 55bd528f97fa8f81db04019eb89d8b11f93ff81d Mon Sep 17 00:00:00 2001 From: SebastianBeyvers Date: Mon, 10 Dec 2018 16:30:54 +0100 Subject: [PATCH] Update Readme --- README.md | 16 ++++++++-------- 1 file changed, 8 insertions(+), 8 deletions(-) diff --git a/README.md b/README.md index 62695a7..ee8d49a 100644 --- a/README.md +++ b/README.md @@ -82,16 +82,16 @@ Optional arguments: --motif_max_len INT Maximum length of Motif (Default: 20) --interation INT Number of iterations done by glam2. More Interations: better results, higher runtime. (Default: 10000) --tomtom_treshold float Threshold for similarity score. (Default: 0.01) - - Motif clustering: + + Motif clustering: --edge_weight INT Minimum weight of edges in motif-cluster-graph (Default: 5) - --motif_similarity_thresh FLOAT threshold for motif similarity score (Default: 0.00001) + --motif_similarity_thresh FLOAT threshold for motif similarity score (Default: 0.00001) - Creating GTF: - --tissues STRING Filter for tissue/category activity categorys as in JSON config (Default: None) - --wd PATH current working directory for the script (default: ".") - --dir PATH directory for saved Ensembl / UCSC file (default: "./data/") - --out PATH directory for the output GTF (default: ".") + Creating GTF: + --tissues STRING Filter for tissue/category activity categorys as in JSON config (Default: None) + --wd PATH current working directory for the script (default: ".") + --dir PATH directory for saved Ensembl / UCSC file (default: "./data/") + --out PATH directory for the output GTF (default: ".") All arguments can be set in the configuration files. ```