From 80ffd2a7ae43dce8877863fb0decbdd128d26ec7 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Ren=C3=A9=20Wiegandt?= <rene.wiegandt@mpi-bn.mpg.de>
Date: Mon, 19 Nov 2018 06:35:08 -0500
Subject: [PATCH] added script for process 'footprint_extraction'

---
 pipeline.nf | 1 +
 1 file changed, 1 insertion(+)

diff --git a/pipeline.nf b/pipeline.nf
index dd67c85..45db184 100644
--- a/pipeline.nf
+++ b/pipeline.nf
@@ -17,6 +17,7 @@ process footprint_extraction {
 
 	script:
 	"""
+	python ${path_bin}/call_peaks.py --bigwig ${bigWig} --bed ${bed} --output_file ${name}_called_peaks.bed --window_length ${params.window_length} --step ${params.step} --threshold ${params.threshold_footprint_extraction}
 	"""
 }