diff --git a/pipeline.nf b/pipeline.nf index fe031af..f5358a6 100644 --- a/pipeline.nf +++ b/pipeline.nf @@ -70,10 +70,10 @@ Required arguments: --config Path to UROPA configuration file --create_known_tfbs_path Path to directory where output from tfbsscan (known motifs) are stored. Path can be set as tfbs_path in next run. (Default: './') - --out Output Directory (Default: './out/') - + --out Output Directory (Default: './out/') + Optional arguments: - + --help [0|1] 1 to show this help message. (Default: 0) --tfbs_path Path to directory with output from tfbsscan. If given tfbsscan will not be run. @@ -634,3 +634,16 @@ process filter { """ """ } */ + +workflow.onComplete { +log.info""" +Pipeline execution summary +--------------------------- +Completed at: ${workflow.complete} +Duration : ${workflow.duration} +Success : ${workflow.success} +workDir : ${workflow.workDir} +exit status : ${workflow.exitStatus} +Error report: ${workflow.errorReport ?: '-'} +""" +}