diff --git a/pipeline.nf b/pipeline.nf index 0855e37..d4a1a11 100644 --- a/pipeline.nf +++ b/pipeline.nf @@ -58,6 +58,8 @@ if (params.bigwig == "" || params.bed == "" || params.genome_fasta == "" || params.motif_db == "" || params.config == ""){ log.info """ +Usage: nextflow run pipeline.nf --bigwig [BigWig-file] --bed [BED-file] --genome_fasta [FASTA-file] --motif_db [MEME-file] + Required arguments: --bigwig Path to BigWig-file --bed Path to BED-file