From a53aa722fea52ae5f1404cab62f987a0fe77a5f5 Mon Sep 17 00:00:00 2001 From: basti Date: Tue, 4 Dec 2018 14:51:17 +0100 Subject: [PATCH] Changed Paths --- bin/Modules/ucsc/ucsc.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/bin/Modules/ucsc/ucsc.py b/bin/Modules/ucsc/ucsc.py index 99788b7..d48ff1a 100644 --- a/bin/Modules/ucsc/ucsc.py +++ b/bin/Modules/ucsc/ucsc.py @@ -10,7 +10,7 @@ class UcscGtf: def __init__(self, org, wd): self.organism_id = self.get_organism_id(org) self.link = "http://hgdownload.soe.ucsc.edu/gbdb/"+self.organism_id+"/ncbiRefSeq/refSeqFuncElems.bb" - self.output = os.path.join(wd,"/UCSCData/"+self.organism_id+".bed") + self.output = os.path.join(wd, "/UCSCData/"+self.organism_id+".bed") self.path_to_bin = os.path.join(wd, "/Modules/ucsc/bigBedToBed") print("Getting UCSC Data") self.generate_gff_file()