diff --git a/pipeline.nf b/pipeline.nf index 71709f9..fe031af 100644 --- a/pipeline.nf +++ b/pipeline.nf @@ -575,7 +575,7 @@ process cluster_quality { process create_GTF { conda "${path_env}" - publishDir 'Path', mode:'copy' + publishDir "${params.out}/gtf/", mode: 'copy' output: file ('*.gtf') into gtf_for_uropa