From c998452f74999ee34d8295dd289b9e09c0b415af Mon Sep 17 00:00:00 2001
From: renewiegandt <rene.wiegandt@mpi-bn.mpg.de>
Date: Sat, 15 Dec 2018 23:44:59 +0100
Subject: [PATCH] Changes output path for create_gtf

---
 pipeline.nf | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pipeline.nf b/pipeline.nf
index 71709f9..fe031af 100644
--- a/pipeline.nf
+++ b/pipeline.nf
@@ -575,7 +575,7 @@ process cluster_quality {
 process create_GTF {
 	conda "${path_env}"
 
-	publishDir 'Path', mode:'copy'
+	publishDir "${params.out}/gtf/", mode: 'copy'
 
 	output:
 	file ('*.gtf') into gtf_for_uropa