diff --git a/bin/bed_to_fasta.R b/bin/bed_to_fasta.R index 56ac9dc..bb4d3dc 100644 --- a/bin/bed_to_fasta.R +++ b/bin/bed_to_fasta.R @@ -55,4 +55,4 @@ bed_to_fasta <- function(bedInput, prefix = "", min_seq = 100){ # run function bed_to_fasta with given parameteres if not in interactive context (e.g. run from shell) if (!interactive()) { bed_to_fasta(opt$input, opt$prefix, opt$min_seq) -} \ No newline at end of file +} diff --git a/pipeline.nf b/pipeline.nf index 463a790..55b7c26 100644 --- a/pipeline.nf +++ b/pipeline.nf @@ -283,7 +283,7 @@ process reduce_bed { """ Rscript ${path_bin}/reduce_bed.R -i ${bed} -k ${params.kmer} -m ${params.aprox_motif_len} -o ${name}_reduced.bed -t ${params.threads} -f ${params.motif_occurence} -s ${params.min_seq_length} """ -}String +} /*