From e2494a0d75571826d8a12983bbf69982a763b5b6 Mon Sep 17 00:00:00 2001
From: renewiegandt <rene.wiegandt@mpi-bn.mpg.de>
Date: Wed, 23 Jan 2019 13:23:30 +0100
Subject: [PATCH] Removed debugging code

---
 pipeline.nf | 5 +----
 1 file changed, 1 insertion(+), 4 deletions(-)

diff --git a/pipeline.nf b/pipeline.nf
index 17fae79..4e3b4fc 100644
--- a/pipeline.nf
+++ b/pipeline.nf
@@ -35,7 +35,7 @@
   	params.identity=0.8
   	params.sequence_coverage=8
   	params.memory=800
- 		params.throw_away_seq=9
+ 	params.throw_away_seq=9
   	params.strand=0
 
 //motif_estimation
@@ -289,9 +289,6 @@ process reduce_sequence {
 	set name, file ('*.bed') into bed_for_clustering
 	file ('*.log')
 
-	when:
-	params.lalal == "1"
-
 	script:
 	"""
 	Rscript ${path_bin}/2.1_clustering/reduce_sequence.R -i ${bed} -k ${params.kmer} -m ${params.aprox_motif_len} -o ${name}_reduced.bed -t ${params.threads} -f ${params.motif_occurence} -s ${params.min_seq_length} --summary reduce_sequence.log