From eb70872dba4c49e7deff2735af51a6ae1e6e88c8 Mon Sep 17 00:00:00 2001
From: renewiegandt <rene.wiegandt@mpi-bn.mpg.de>
Date: Mon, 3 Dec 2018 14:10:34 +0100
Subject: [PATCH] added parameter to config files

---
 config/motif_estimation.config | 11 +++++++++++
 config/peak_calling.config     |  5 +++++
 2 files changed, 16 insertions(+)

diff --git a/config/motif_estimation.config b/config/motif_estimation.config
index e69de29..a00fc86 100644
--- a/config/motif_estimation.config
+++ b/config/motif_estimation.config
@@ -0,0 +1,11 @@
+params {
+	//bed_to_clustered_fasta
+	min_seq = 10
+	
+	//glam2
+	motif_min_len = 10
+	motif_max_len = 20
+
+	//tomtom
+	tomtom_treshold = 0.01
+}
\ No newline at end of file
diff --git a/config/peak_calling.config b/config/peak_calling.config
index e69de29..566925e 100644
--- a/config/peak_calling.config
+++ b/config/peak_calling.config
@@ -0,0 +1,5 @@
+params{
+	window_length = 
+	step = 
+	threshold_footprint_extraction =
+}
\ No newline at end of file