diff --git a/config/create_gtf.config b/config/create_gtf.config
index c0718a6..c38afaa 100644
--- a/config/create_gtf.config
+++ b/config/create_gtf.config
@@ -1,4 +1,3 @@
 params{
-  organism="hg38"
   tissue=""
 }
diff --git a/config/filter_motifs.config b/config/filter_motifs.config
index 79033c4..2e58410 100644
--- a/config/filter_motifs.config
+++ b/config/filter_motifs.config
@@ -1,4 +1,5 @@
 params{
   min_size_fp=10
   max_size_fp=100
+  tfbsscan_method = "moods"
 }
diff --git a/config/footprint_extraction.config b/config/footprint_extraction.config
index 8cec30d..0661e2a 100644
--- a/config/footprint_extraction.config
+++ b/config/footprint_extraction.config
@@ -2,4 +2,5 @@ params{
 	window_length = 200
 	step = 100
 	percentage = 0
+	max_bp_between = 6
 }