From fc9c02ca16af604b7927f9ef9ac19cdc410fb535 Mon Sep 17 00:00:00 2001 From: basti Date: Sun, 6 Jan 2019 15:13:35 +0100 Subject: [PATCH] Added ";" in attributes (last) field -> fix #29 --- bin/3.1_create_gtf/Modules/Ensembl/GTFGen.py | 2 +- bin/3.1_create_gtf/Modules/ucsc/ucsc.py | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/bin/3.1_create_gtf/Modules/Ensembl/GTFGen.py b/bin/3.1_create_gtf/Modules/Ensembl/GTFGen.py index db37811..b6558c0 100644 --- a/bin/3.1_create_gtf/Modules/Ensembl/GTFGen.py +++ b/bin/3.1_create_gtf/Modules/Ensembl/GTFGen.py @@ -96,7 +96,7 @@ def generate_additional_information(gene_id, activity): activity_string = 'activity "'+', '.join(activity)+'"' - return gene_id+'; '+activity_string + return gene_id+'; '+activity_string+';' def generate_activity_list(self, activity, index): diff --git a/bin/3.1_create_gtf/Modules/ucsc/ucsc.py b/bin/3.1_create_gtf/Modules/ucsc/ucsc.py index 486dbc4..50c033b 100644 --- a/bin/3.1_create_gtf/Modules/ucsc/ucsc.py +++ b/bin/3.1_create_gtf/Modules/ucsc/ucsc.py @@ -67,7 +67,7 @@ def read_gff_to_gtf(self): sequence.append(".") sequence.append(row[5]) sequence.append(".") - sequence.append('; '.join([self.find_ID(''.join(row[11:])), 'activity \"'+", ".join(self.get_activity(''.join(row[11:]))) + '"'])) + sequence.append('; '.join([self.find_ID(''.join(row[11:])), 'activity \"'+", ".join(self.get_activity(''.join(row[11:]))) + '"'])+";") gtf_lines.append(sequence) return gtf_lines