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Commits on Jan 12, 2019

• deleting print statements

  anastasiia

  committedJan 12, 2019
  40088b2

• making the list out of the dictionary in the merge function to ensure the sorting before check for merging

  anastasiia

  committedJan 12, 2019
  a9331ac

Commits on Jan 10, 2019

• deleting the print statements, adding some comments

  anastasiia

  committedJan 10, 2019
  1523096

• adding a validation while printing to the output file. If there are problems with start/end positions or max_pos, the footprint will not be written to the output file

  anastasiia

  committedJan 10, 2019
  2fe66fd

• the max_pos is the index, and so add always 1 after calculating it. Otherwise it could be 0 as index

  anastasiia

  committedJan 10, 2019
  b2f3773

Commits on Jan 9, 2019

• fixing the typo footprints and not footrpints

  anastasiia

  committedJan 9, 2019
  b102737

• Merge branch 'peak_calling' of https://github.molgen.mpg.de/loosolab/masterJLU2018 into peak_calling

  anastasiia

  committedJan 9, 2019
  0f22336

• fixing the bug with merging. The code will be edited soon to look nice and easy to understand

  anastasiia

  committedJan 9, 2019
  d4b1245

• the structure is ready, this need to be adjusted to the data the footprint_extraction parses

  anastasiia

  committedJan 9, 2019
  31315e6

Commits on Jan 8, 2019

• added the shebang line

  anastasiia

  authoredJan 8, 2019
  7c3bb47

• changing the name of footprints from footprint_ to f_ to make sure the script of René works well

  anastasiia

  committedJan 8, 2019
  0308a0c

Commits on Jan 7, 2019

• allowing user to set the parameter for max bp allowed in between the footprints; also adding some comments

  anastasiia

  committedJan 7, 2019
  7a5d6df

• fixing the bug with overlaps + adding a merging function if the footprints have small ammount of bp in between

  anastasiia

  committedJan 7, 2019
  c452934

• fixing the bug with footprint length

  anastasiia

  committedJan 7, 2019
  aa1e9f0

Commits on Jan 4, 2019

• adding a check if the directory was passed by the user

  anastasiia

  committedJan 4, 2019
  18a4fb5

• checking for the directory the user wants to save the file in, and creating one if it does not exist

  anastasiia

  committedJan 4, 2019
  2dfa509

• if there is no additional information provided by the original input bed file. the point will be printed to the last column in the output bed file

  anastasiia

  committedJan 4, 2019
  e9850e0

• Merge pull request #37 from loosolab/dev

  anastasiia

  authoredJan 4, 2019
  54723f7

Commits on Jan 3, 2019

• Merge pull request #31 from loosolab/anastasiia-patch-1

  renewiegandt

  authoredJan 3, 2019
  c9e7c82

• missing points in readme

  anastasiia

  authoredJan 3, 2019
  e629131

• Merge pull request #28 from loosolab/estimation_motifs

  renewiegandt

  authoredJan 3, 2019
  8993670

• Merge branch 'dev' into estimation_motifs

  renewiegandt

  committedJan 3, 2019
  ab6f883

• Merge pull request #30 from loosolab/cluster

  HendrikSchultheis

  authoredJan 3, 2019
  1c392da

• install optparse if not yet installed; added missing author to documentation

  HendrikSchultheis

  committedJan 3, 2019
  fde8a8b

• Renaming output paths

  renewiegandt

  committedJan 3, 2019
  83460e9

• sorting scripts depending on their function

  renewiegandt

  committedJan 3, 2019
  b7c80c8

• Merge pull request #24 from loosolab/peak_calling

  renewiegandt

  authoredJan 3, 2019
  e29ad65

Commits on Jan 2, 2019

• fixing the bug with the output directory name

  anastasiia

  authoredJan 2, 2019
  36d7756

• fix for the help message called using -h

  anastasiia

  authoredJan 2, 2019
  e224922

Commits on Dec 27, 2018

• Improving comments

  anastasiia

  authoredDec 27, 2018
  9a58755

Commits on Dec 22, 2018

• Merge pull request #21 from loosolab/motif_estiamtion

  renewiegandt

  authoredDec 22, 2018
  181fc68

Commits on Dec 21, 2018

• Fixed bug in pipeline.nf: parameter gtf_path is now working

  renewiegandt

  committedDec 21, 2018
  13bccda

• Merge pull request #17 from loosolab/cluster

  HendrikSchultheis

  authoredDec 21, 2018
  935ba3f

Commits on Dec 20, 2018

• Merge branch 'motif_estiamtion' of https://github.molgen.mpg.de/loosolab/masterJLU2018 into motif_estiamtion

  renewiegandt

  committedDec 20, 2018
  d70610e

• Added new parameter list to README.mf

  renewiegandt

  committedDec 20, 2018
  1c6bcf1

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