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Cluster #3

Merged
merged 15 commits into from
Dec 6, 2018
Merged

Cluster #3

merged 15 commits into from
Dec 6, 2018

Commits on Dec 5, 2018

  1. fixed minimum sequence length and added check

    @HendrikSchultheis
    HendrikSchultheis committed Dec 5, 2018
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  2. implemented minoverlap_kmer & minoverlap_motif

    @HendrikSchultheis
    HendrikSchultheis committed Dec 5, 2018
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  3. better docu; reorder data in reduce_kmer()

    @HendrikSchultheis
    HendrikSchultheis committed Dec 5, 2018
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  4. added progress messages; thread param; documentation

    @HendrikSchultheis
    HendrikSchultheis committed Dec 5, 2018
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Commits on Dec 6, 2018

  1. implemented motif_occurence for cutoff computation

    @HendrikSchultheis
    HendrikSchultheis committed Dec 6, 2018
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  2. threads = 0 for all cores to match cd-hit

    @HendrikSchultheis
    HendrikSchultheis committed Dec 6, 2018
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  3. added more cdhit parameter

    @HendrikSchultheis
    HendrikSchultheis committed Dec 6, 2018
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  4. changed type of motif_occurence to double

    @HendrikSchultheis
    HendrikSchultheis committed Dec 6, 2018
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  5. renamed ignore_strand to strand

    @HendrikSchultheis
    HendrikSchultheis committed Dec 6, 2018
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  6. new clustering parameter added

    @HendrikSchultheis
    HendrikSchultheis committed Dec 6, 2018
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  7. Merge remote-tracking branch 'origin/dev' into cluster 

    # Conflicts:
#	config/cluster.config
    @HendrikSchultheis
    HendrikSchultheis committed Dec 6, 2018
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  8. fixed ambiguous flags

    @HendrikSchultheis
    HendrikSchultheis committed Dec 6, 2018
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  9. fixed ambiguous flags + nameing bug in find_kmer_regions

    @HendrikSchultheis
    HendrikSchultheis committed Dec 6, 2018
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  10. removed param threads

    @HendrikSchultheis
    HendrikSchultheis committed Dec 6, 2018
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  11. added parameter to list and description

    @HendrikSchultheis
    HendrikSchultheis committed Dec 6, 2018
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