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2.2 creates json file containing motif sequences #47

Merged
merged 20 commits into from
Jan 10, 2019
Merged

2.2 creates json file containing motif sequences #47

merged 20 commits into from
Jan 10, 2019

Commits on Jan 8, 2019

  1. Merge branch 'dev' into estimation_motifs

    @renewiegandt
    renewiegandt committed Jan 8, 2019
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  2. get_best_motif.py: Added alternative name to best_motif file

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    renewiegandt committed Jan 8, 2019
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  3. get_best_motif.py: removed whitespace from motif header

    @renewiegandt
    renewiegandt committed Jan 8, 2019
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  4. added script get_motif_seq.R

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    renewiegandt committed Jan 8, 2019
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  5. pipeline.nf: implemented get_motif_seq.R

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    renewiegandt committed Jan 8, 2019
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  6. added r packages: RJSONIO, varhandle to masterenv.yml

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    renewiegandt committed Jan 8, 2019
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  7. Merge branch 'dev' into estimation_motifs

    @renewiegandt
    renewiegandt committed Jan 8, 2019
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Commits on Jan 9, 2019

  1. get_best_motif.py: added parameter cluster id

    @renewiegandt
    renewiegandt committed Jan 9, 2019
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  2. get_motif_seq.R: added parameter tmp_path and cluster_id

    @renewiegandt
    renewiegandt committed Jan 9, 2019
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  3. pipeline.nf: adjusting to new parameters required by get_best_motif; … 

    …get_motif_seq
    @renewiegandt
    renewiegandt committed Jan 9, 2019
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  4. Added log file for part 2.2_motif_estimation

    @renewiegandt
    renewiegandt committed Jan 9, 2019
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  5. Merge branch 'dev' into estimation_motifs

    @renewiegandt
    renewiegandt committed Jan 9, 2019
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  6. added missing shebangs to 2.2 scripts #44

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    renewiegandt committed Jan 9, 2019
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  7. pipeline.nf: adjusting to new parameter required by 2.1 scripts

    @renewiegandt
    renewiegandt committed Jan 9, 2019
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Commits on Jan 10, 2019

  1. pipeline.nf: fixed typos

    @renewiegandt
    renewiegandt committed Jan 10, 2019
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  2. get_best_motif.py: Removed additional whitespace in motif header

    @renewiegandt
    renewiegandt committed Jan 10, 2019
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  3. pipeline.nf: removed code for debuging

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    renewiegandt committed Jan 10, 2019
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  4. bed_to_fasta.R: changes lapply to vapply

    @renewiegandt
    renewiegandt committed Jan 10, 2019
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  5. Removed import os from get_best_motif.py

    @renewiegandt
    renewiegandt committed Jan 10, 2019
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  6. Removed newline from get_motif_seq

    @renewiegandt
    renewiegandt committed Jan 10, 2019
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