From 3a14de8bd5ebc3465243c97c290f1865addb16fa Mon Sep 17 00:00:00 2001 From: JannikHamp Date: Fri, 11 Jan 2019 12:35:10 +0100 Subject: [PATCH] added info, that file_paths must not contain the "|" pipe symbol --- bin/1.2_filter_motifs/compareBed.sh | 3 +++ 1 file changed, 3 insertions(+) diff --git a/bin/1.2_filter_motifs/compareBed.sh b/bin/1.2_filter_motifs/compareBed.sh index d358865..7cf0017 100644 --- a/bin/1.2_filter_motifs/compareBed.sh +++ b/bin/1.2_filter_motifs/compareBed.sh @@ -11,6 +11,7 @@ # The output is a file with the filtered footprints and the log file compareBed.stats # One R scripts is used, compareBed_runinfo.R, stored in the same directory. +# Parameter values (file/directory paths) must not contain the | symbol, because it is chosen as "sed"-field separator. # default parameters workdir=$PWD @@ -122,6 +123,8 @@ then echo " -max --max maximum size of footprints; default is 80" echo " -o --output output path/file ; default dir current directory and filename is newMotifs.bed and newMotifs.bed.fasta" echo " -h --help shows this help message" + echo "" + echo " Note: file paths must not contain the '|' pipe symbol" exit 0 fi