diff --git a/README.md b/README.md index 476265a..c26cd51 100644 --- a/README.md +++ b/README.md @@ -26,6 +26,8 @@ conda env create -f masterenv.yml conda activate masterenv ``` +4. Set the wd parameter in the nextflow.config file as path where the repository is saved. For example: '~/masterJLU2018/'. + **Important Note:** For conda the channel bioconda needs to be set as highest priority! This is required due to two different packages with the same name in different channels. For the pipeline the package jellyfish from the channel bioconda is needed and **NOT** the jellyfish package from the channel conda-forge!