From eab76726102cf0481b01076c5c9464fa7078f332 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Ren=C3=A9=20Wiegandt?= Date: Fri, 18 Jan 2019 16:25:10 -0500 Subject: [PATCH 1/7] README: Updated demo --- README.md | 14 ++++++++++---- 1 file changed, 10 insertions(+), 4 deletions(-) diff --git a/README.md b/README.md index c26cd51..1e715d5 100644 --- a/README.md +++ b/README.md @@ -29,21 +29,27 @@ conda activate masterenv 4. Set the wd parameter in the nextflow.config file as path where the repository is saved. For example: '~/masterJLU2018/'. -**Important Note:** For conda the channel bioconda needs to be set as highest priority! This is required due to two different packages with the same name in different channels. For the pipeline the package jellyfish from the channel bioconda is needed and **NOT** the jellyfish package from the channel conda-forge! - +**Important Notes:** +1. For conda the channel bioconda needs to be set as highest priority! This is required due to two different packages with the same name in different channels. For the pipeline the package jellyfish from the channel bioconda is needed and **NOT** the jellyfish package from the channel conda-forge! +2. The paramtere --create_known_tfbs_path and --tfbs_path need the absolute path. If a relative path is given it will not work due to nextflow changing the working directory. This will soon be updated. ## Quick Start ```console -nextflow run pipeline.nf --bigwig [BigWig-file] --bed [BED-file] --genome_fasta [FASTA-file] --motif_db [MEME-file] --organism [mm10|mm9|hg19|hg38] +nextflow run pipeline.nf --bigwig [BigWig-file] --bed [BED-file] --genome_fasta [FASTA-file] --motif_db [MEME-file] --organism [mm10|mm9|hg19|hg38] (--tfbs_path [absolute PATH] || --create_known_tfbs_path [absolute PATH]) ``` ### Demo run There are files provided inside ./demo/ for a demo run. Go to the main directory and run following command: ``` -nextflow run pipeline.nf --bigwig ./demo/buenrostro50k_chr1_fp.bw --bed ./demo/buenrostro50k_chr1_peaks.bed --genome_fasta ./demo/hg38/hg38_chr1.fa --motif_db ./demo/motif_database/jaspar_vertebrates.meme --out ./demo/buenrostro50k_chr1_out/ --create_known_tfbs_path ./demo/known_tfbs_hg38_chr1/ --organism hg38 +nextflow run pipeline.nf --bigwig ./demo/buenrostro50k_chr1_fp.bw --bed ./demo/buenrostro50k_chr1_peaks.bed --genome_fasta ./demo/hg38/hg38_chr1.fa --motif_db ./demo/motif_database/jaspar_vertebrates.meme --out ./demo/buenrostro50k_chr1_out/ --create_known_tfbs_path [absolute path]/demo/known_tfbs/ --organism hg38 +``` +**Important Note:** In can happen that tfbsscan does not work due to an unknown bug. If this is the case you will see the error message shown in "Known Issues". If this occurs and "fimo" will also throw this error, try following command: ``` +nextflow run pipeline.nf --bigwig ./demo/buenrostro50k_chr1_fp.bw --bed ./demo/buenrostro50k_chr1_peaks.bed --genome_fasta ./demo/hg38/hg38_chr1.fa --motif_db ./demo/motif_database/jaspar_vertebrates.meme --out ./demo/buenrostro50k_chr1_out/ --tfbs_path [absolute path]/demo/known_tfbs_chr1_hg38/ --organism hg38 +``` + ## Parameters For a detailed overview for all parameters follow this [link](https://github.molgen.mpg.de/loosolab/masterJLU2018/wiki/Configuration). From ca5ff364ddae1de840a0f764937fc68626ec7c7f Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Ren=C3=A9=20Wiegandt?= Date: Fri, 18 Jan 2019 16:25:50 -0500 Subject: [PATCH 2/7] pipeline.nf: Update help message --- pipeline.nf | 10 ++++++---- 1 file changed, 6 insertions(+), 4 deletions(-) diff --git a/pipeline.nf b/pipeline.nf index 0ca6c7d..fa02c78 100644 --- a/pipeline.nf +++ b/pipeline.nf @@ -73,13 +73,15 @@ Required arguments: --config Path to UROPA configuration file --organism Input organism [hg38 | hg19 | mm9 | mm10] --out Output Directory (Default: './out/') - + [ + --create_known_tfbs_path Path to directory where output from tfbsscan (known motifs) are stored. + Path can be set as tfbs_path in next run. (Needs absolute path) + or + --tfbs_path Path to directory with output from tfbsscan. If given tfbsscan will not be run. (Needs absolute path) + ] Optional arguments: --help [0|1] 1 to show this help message. (Default: 0) - --tfbs_path Path to directory with output from tfbsscan. If given tfbsscan will not be run. - --create_known_tfbs_path Path to directory where output from tfbsscan (known motifs) are stored. - Path can be set as tfbs_path in next run. (Default: './') --gtf_path Path to gtf-file. If path is set the process which creats a gtf-file is skipped. Footprint extraction: From 00a5854ec8df9596cd0f264ba8af7e56cc112ad9 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Ren=C3=A9=20Wiegandt?= Date: Fri, 18 Jan 2019 17:47:13 -0500 Subject: [PATCH 3/7] README: parameter update --- README.md | 14 +++++++++----- 1 file changed, 9 insertions(+), 5 deletions(-) diff --git a/README.md b/README.md index 53cdc16..4cb7b67 100644 --- a/README.md +++ b/README.md @@ -62,14 +62,17 @@ Required arguments: --config Path to UROPA configuration file --organism Input organism [hg38 | hg19 | mm9 | mm10] --out Output Directory (Default: './out/') + [ + --create_known_tfbs_path Path to directory where output from tfbsscan (known motifs) are stored. + Path can be set as tfbs_path in next run. (Needs absolute path) + or + --tfbs_path Path to directory with output from tfbsscan. If given tfbsscan will not be run. (Needs absolute path) + ] Optional arguments: --help [0|1] 1 to show this help message. (Default: 0) - --tfbs_path Path to directory with output from tfbsscan. If given tfbsscan will not be run. - --create_known_tfbs_path Path to directory where output from tfbsscan (known motifs) are stored. - Path can be set as tfbs_path in next run. (Default: './') - --gtf_path Path to gtf-file. If path is set the process which creats a gtf-file is skipped. + --gtf_path Path to gtf-file. If path is set the process which creats a gtf-file is skipped. Footprint extraction: --window_length INT This parameter sets the length of a sliding window. (Default: 200) @@ -103,8 +106,9 @@ Optional arguments: --iteration INT Number of iterations done by GLAM2. More Iterations: better results, higher runtime. (Default: 10000) --tomtom_treshold FLOAT Threshold for similarity score. (Default: 0.01) --best_motif INT Get the best X motifs per cluster. (Default: 3) + --gap_penalty INT Set penalty for gaps in GLAM2 (Default: 1000) Moitf clustering: - --cluster_motif Boolean If 1 pipeline clusters motifs. If its 0 it does not. (Default: 0) + --cluster_motif Boolean If 1 pipeline clusters motifs. If its 0 it does not. (Defaul: 0) --edge_weight INT Minimum weight of edges in motif-cluster-graph (Default: 5) --motif_similarity_thresh FLOAT Threshold for motif similarity score (Default: 0.00001) From 47b45553646b97f2538f377245e1010bb6bb3be9 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Ren=C3=A9=20Wiegandt?= Date: Fri, 18 Jan 2019 17:48:10 -0500 Subject: [PATCH 4/7] get_motif_seq.R: fixed bug mentioned in #77 --- bin/2.2_motif_estimation/get_motif_seq.R | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/bin/2.2_motif_estimation/get_motif_seq.R b/bin/2.2_motif_estimation/get_motif_seq.R index acce6f2..bbcaff6 100644 --- a/bin/2.2_motif_estimation/get_motif_seq.R +++ b/bin/2.2_motif_estimation/get_motif_seq.R @@ -51,12 +51,12 @@ create_seq_json <- function(input, output, num, tmp_path, cluster_id) { stop(paste0("CLUSTER ID could not be found. Please make sure that your file path contains _[cluster_id] at the end. Found: ", cluster_id,"\n For example: /test_cluster_1/glam.txt")) } - dir.create(tmp_path, showWarnings = FALSE) + dir.create(tmp_path, showWarnings = FALSE, recursive = TRUE) file_dir <- tmp_path # Split glam.txt file on lines that start with Score: - system(paste0("csplit ", input, " '/^Score:.*/' '{*}' -f ", file_dir, "/f_id_test.pholder")) + system(paste0("csplit ", input, " '/^Score:.*/' '{*}' -f ", file_dir, "/f_id.pholder")) # Only keep the lines that start with 'f' to get the lines with the sequence ids system(paste0("for i in ", file_dir, "/*.pholder0[1-", num, "];do grep \"^f\" $i > \"${i}.done\";done")) From da0f096aa8075278c018d71e96332a9f501e046d Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Ren=C3=A9=20Wiegandt?= Date: Fri, 18 Jan 2019 17:51:13 -0500 Subject: [PATCH 5/7] pipeline.nf: Added errorStrategy 'finish' to process createGTF; Minor changes in help message --- pipeline.nf | 11 ++++++----- 1 file changed, 6 insertions(+), 5 deletions(-) diff --git a/pipeline.nf b/pipeline.nf index 51ea511..c845bc3 100644 --- a/pipeline.nf +++ b/pipeline.nf @@ -7,7 +7,7 @@ params.motif_db="" params.config="" params.tfbs_path="" - params.create_known_tfbs_path = "./" + params.create_known_tfbs_path = "" params.help = 0 params.gtf_path="" params.out = "./out/" @@ -62,7 +62,7 @@ params.organism="" params.tissue="" -if (params.bigwig == "" || params.bed == "" || params.organism == "" || params.genome_fasta == "" || params.motif_db == "" || params.config == "" || "${params.help}" != "0"){ +if (params.bigwig == "" || params.bed == "" || params.organism == "" || params.genome_fasta == "" || params.motif_db == "" || params.config == "" || "${params.help}" != "0" || ("${params.create_known_tfbs_path}" == "" && "${params.tfbs_path}" == "")){ log.info """ Usage: nextflow run pipeline.nf --bigwig [BigWig-file] --bed [BED-file] --genome_fasta [FASTA-file] --motif_db [MEME-file] --config [UROPA-config-file] @@ -80,16 +80,17 @@ Required arguments: or --tfbs_path Path to directory with output from tfbsscan. If given tfbsscan will not be run. (Needs absolute path) ] + Optional arguments: --help [0|1] 1 to show this help message. (Default: 0) - --gtf_path Path to gtf-file. If path is set the process which creats a gtf-file is skipped. + --gtf_path Path to gtf-file. If path is set the process which creats a gtf-file is skipped. Footprint extraction: --window_length INT This parameter sets the length of a sliding window. (Default: 200) --step INT This parameter sets the number of positions to slide the window forward. (Default: 100) --percentage INT Threshold in percent (Default: 0) - --min_gap INT If footprints are less than X bases apart the footprints will be merged (Default: 6) + --min_gap INT If footprints are less than X bases apart the footprints will be merged (Default: 6) Filter motifs: --min_size_fp INT Minimum sequence length threshold. Smaller sequences are discarded. (Default: 10) @@ -712,7 +713,7 @@ process cluster_quality { process create_GTF { //conda "${path_env}" - + errorStrategy 'finish' publishDir "${params.out}/3.1_create_gtf/", mode: 'copy' output: From 4756f35ec6114d3c8baedd2db643928d388eb4b0 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Ren=C3=A9=20Wiegandt?= Date: Fri, 18 Jan 2019 17:52:23 -0500 Subject: [PATCH 6/7] Added known tfbs sites for demo run --- demo/known_tfbs_chr1_hg38/ALX3_MA0634.1.bed | 0 .../ARNT_HIF1A_MA0259.1.bed | 0 demo/known_tfbs_chr1_hg38/ASCL1_MA1100.1.bed | 1275 +++ demo/known_tfbs_chr1_hg38/ATF4_MA0833.1.bed | 0 demo/known_tfbs_chr1_hg38/ATF7_MA0834.1.bed | 120 + .../Ahr_Arnt_MA0006.1.bed | 447 ++ demo/known_tfbs_chr1_hg38/Alx1_MA0854.1.bed | 0 demo/known_tfbs_chr1_hg38/Alx4_MA0853.1.bed | 0 demo/known_tfbs_chr1_hg38/Ar_MA0007.3.bed | 123 + demo/known_tfbs_chr1_hg38/Arid3a_MA0151.1.bed | 801 ++ demo/known_tfbs_chr1_hg38/Arid3b_MA0601.1.bed | 344 + demo/known_tfbs_chr1_hg38/Arid5a_MA0602.1.bed | 229 + demo/known_tfbs_chr1_hg38/Arnt_MA0004.1.bed | 591 ++ demo/known_tfbs_chr1_hg38/Arntl_MA0603.1.bed | 118 + demo/known_tfbs_chr1_hg38/Arx_MA0874.1.bed | 0 demo/known_tfbs_chr1_hg38/Ascl2_MA0816.1.bed | 813 ++ demo/known_tfbs_chr1_hg38/Atf1_MA0604.1.bed | 0 demo/known_tfbs_chr1_hg38/Atf3_MA0605.1.bed | 0 demo/known_tfbs_chr1_hg38/Atoh1_MA0461.2.bed | 0 demo/known_tfbs_chr1_hg38/BACH2_MA1101.1.bed | 465 ++ demo/known_tfbs_chr1_hg38/BARHL2_MA0635.1.bed | 0 demo/known_tfbs_chr1_hg38/BARX1_MA0875.1.bed | 0 demo/known_tfbs_chr1_hg38/BATF3_MA0835.1.bed | 118 + .../BATF_JUN_MA0462.1.bed | 558 ++ demo/known_tfbs_chr1_hg38/BCL6B_MA0731.1.bed | 227 + .../known_tfbs_chr1_hg38/BHLHE22_MA0818.1.bed | 0 .../known_tfbs_chr1_hg38/BHLHE23_MA0817.1.bed | 0 .../known_tfbs_chr1_hg38/BHLHE40_MA0464.2.bed | 115 + .../known_tfbs_chr1_hg38/BHLHE41_MA0636.1.bed | 114 + demo/known_tfbs_chr1_hg38/BSX_MA0876.1.bed | 0 .../Bach1_Mafk_MA0591.1.bed | 327 + demo/known_tfbs_chr1_hg38/Barhl1_MA0877.1.bed | 0 demo/known_tfbs_chr1_hg38/Bcl6_MA0463.1.bed | 355 + .../known_tfbs_chr1_hg38/Bhlha15_MA0607.1.bed | 0 demo/known_tfbs_chr1_hg38/CDX1_MA0878.1.bed | 235 + demo/known_tfbs_chr1_hg38/CDX2_MA0465.1.bed | 235 + demo/known_tfbs_chr1_hg38/CEBPA_MA0102.3.bed | 233 + demo/known_tfbs_chr1_hg38/CEBPB_MA0466.2.bed | 0 demo/known_tfbs_chr1_hg38/CEBPD_MA0836.1.bed | 0 demo/known_tfbs_chr1_hg38/CEBPE_MA0837.1.bed | 0 demo/known_tfbs_chr1_hg38/CEBPG_MA0838.1.bed | 0 demo/known_tfbs_chr1_hg38/CENPB_MA0637.1.bed | 0 demo/known_tfbs_chr1_hg38/CLOCK_MA0819.1.bed | 118 + demo/known_tfbs_chr1_hg38/CREB1_MA0018.3.bed | 351 + .../known_tfbs_chr1_hg38/CREB3L1_MA0839.1.bed | 0 demo/known_tfbs_chr1_hg38/CREB3_MA0638.1.bed | 0 demo/known_tfbs_chr1_hg38/CTCFL_MA1102.1.bed | 1859 +++++ demo/known_tfbs_chr1_hg38/CTCF_MA0139.1.bed | 1060 +++ demo/known_tfbs_chr1_hg38/CUX1_MA0754.1.bed | 0 demo/known_tfbs_chr1_hg38/CUX2_MA0755.1.bed | 0 .../known_tfbs_chr1_hg38/Creb3l2_MA0608.1.bed | 115 + demo/known_tfbs_chr1_hg38/Creb5_MA0840.1.bed | 118 + demo/known_tfbs_chr1_hg38/Crem_MA0609.1.bed | 0 demo/known_tfbs_chr1_hg38/Crx_MA0467.1.bed | 121 + demo/known_tfbs_chr1_hg38/DBP_MA0639.1.bed | 0 demo/known_tfbs_chr1_hg38/DLX6_MA0882.1.bed | 0 demo/known_tfbs_chr1_hg38/DMRT3_MA0610.1.bed | 0 demo/known_tfbs_chr1_hg38/DUX4_MA0468.1.bed | 917 +++ demo/known_tfbs_chr1_hg38/DUXA_MA0884.1.bed | 348 + .../Ddit3_Cebpa_MA0019.1.bed | 108 + demo/known_tfbs_chr1_hg38/Dlx1_MA0879.1.bed | 0 demo/known_tfbs_chr1_hg38/Dlx2_MA0885.1.bed | 0 demo/known_tfbs_chr1_hg38/Dlx3_MA0880.1.bed | 0 demo/known_tfbs_chr1_hg38/Dlx4_MA0881.1.bed | 0 demo/known_tfbs_chr1_hg38/Dmbx1_MA0883.1.bed | 0 demo/known_tfbs_chr1_hg38/Dux_MA0611.1.bed | 122 + demo/known_tfbs_chr1_hg38/E2F1_MA0024.3.bed | 0 demo/known_tfbs_chr1_hg38/E2F2_MA0864.1.bed | 0 demo/known_tfbs_chr1_hg38/E2F3_MA0469.2.bed | 0 demo/known_tfbs_chr1_hg38/E2F4_MA0470.1.bed | 1413 ++++ demo/known_tfbs_chr1_hg38/E2F6_MA0471.1.bed | 1646 ++++ demo/known_tfbs_chr1_hg38/E2F7_MA0758.1.bed | 118 + demo/known_tfbs_chr1_hg38/E2F8_MA0865.1.bed | 237 + demo/known_tfbs_chr1_hg38/EBF1_MA0154.3.bed | 473 ++ demo/known_tfbs_chr1_hg38/EGR1_MA0162.3.bed | 829 ++ demo/known_tfbs_chr1_hg38/EGR2_MA0472.2.bed | 710 ++ demo/known_tfbs_chr1_hg38/EGR3_MA0732.1.bed | 1535 ++++ demo/known_tfbs_chr1_hg38/EGR4_MA0733.1.bed | 945 +++ demo/known_tfbs_chr1_hg38/EHF_MA0598.2.bed | 480 ++ demo/known_tfbs_chr1_hg38/ELF1_MA0473.2.bed | 473 ++ demo/known_tfbs_chr1_hg38/ELF3_MA0640.1.bed | 472 ++ demo/known_tfbs_chr1_hg38/ELF4_MA0641.1.bed | 590 ++ demo/known_tfbs_chr1_hg38/ELF5_MA0136.2.bed | 590 ++ demo/known_tfbs_chr1_hg38/ELK1_MA0028.2.bed | 356 + demo/known_tfbs_chr1_hg38/ELK3_MA0759.1.bed | 356 + demo/known_tfbs_chr1_hg38/ELK4_MA0076.2.bed | 827 ++ demo/known_tfbs_chr1_hg38/EMX1_MA0612.1.bed | 0 demo/known_tfbs_chr1_hg38/EMX2_MA0886.1.bed | 0 demo/known_tfbs_chr1_hg38/EN1_MA0027.2.bed | 0 demo/known_tfbs_chr1_hg38/EN2_MA0642.1.bed | 0 demo/known_tfbs_chr1_hg38/EOMES_MA0800.1.bed | 233 + demo/known_tfbs_chr1_hg38/ERF_MA0760.1.bed | 360 + demo/known_tfbs_chr1_hg38/ERG_MA0474.2.bed | 362 + demo/known_tfbs_chr1_hg38/ESR1_MA0112.3.bed | 236 + demo/known_tfbs_chr1_hg38/ESR2_MA0258.2.bed | 355 + demo/known_tfbs_chr1_hg38/ESRRB_MA0141.3.bed | 118 + demo/known_tfbs_chr1_hg38/ESX1_MA0644.1.bed | 0 demo/known_tfbs_chr1_hg38/ETS1_MA0098.3.bed | 356 + demo/known_tfbs_chr1_hg38/ETV1_MA0761.1.bed | 239 + demo/known_tfbs_chr1_hg38/ETV2_MA0762.1.bed | 356 + demo/known_tfbs_chr1_hg38/ETV3_MA0763.1.bed | 239 + demo/known_tfbs_chr1_hg38/ETV4_MA0764.1.bed | 239 + demo/known_tfbs_chr1_hg38/ETV5_MA0765.1.bed | 239 + demo/known_tfbs_chr1_hg38/ETV6_MA0645.1.bed | 707 ++ demo/known_tfbs_chr1_hg38/EVX1_MA0887.1.bed | 0 demo/known_tfbs_chr1_hg38/EVX2_MA0888.1.bed | 0 .../EWSR1_FLI1_MA0149.1.bed | 2858 +++++++ demo/known_tfbs_chr1_hg38/Esrra_MA0592.2.bed | 118 + demo/known_tfbs_chr1_hg38/Esrrg_MA0643.1.bed | 118 + demo/known_tfbs_chr1_hg38/FEV_MA0156.2.bed | 360 + demo/known_tfbs_chr1_hg38/FIGLA_MA0820.1.bed | 350 + demo/known_tfbs_chr1_hg38/FLI1_MA0475.2.bed | 356 + .../FOSB_JUNB_MA1135.1.bed | 440 + .../FOSB_JUNB_var.2__MA1136.1.bed | 202 + .../FOSB_JUN_MA1127.1.bed | 224 + .../FOSL1_JUNB_MA1137.1.bed | 436 + .../FOSL1_JUND_MA1142.1.bed | 434 + .../FOSL1_JUND_var.2__MA1143.1.bed | 101 + .../FOSL1_JUN_MA1128.1.bed | 331 + .../FOSL1_JUN_var.2__MA1129.1.bed | 202 + demo/known_tfbs_chr1_hg38/FOSL1_MA0477.1.bed | 580 ++ .../FOSL2_JUNB_MA1138.1.bed | 542 ++ .../FOSL2_JUNB_var.2__MA1139.1.bed | 200 + .../FOSL2_JUND_MA1144.1.bed | 542 ++ .../FOSL2_JUND_var.2__MA1145.1.bed | 200 + .../FOSL2_JUN_MA1130.1.bed | 441 + .../FOSL2_JUN_var.2__MA1131.1.bed | 202 + demo/known_tfbs_chr1_hg38/FOSL2_MA0478.1.bed | 580 ++ .../FOS_JUNB_MA1134.1.bed | 558 ++ .../FOS_JUND_MA1141.1.bed | 336 + .../known_tfbs_chr1_hg38/FOS_JUN_MA0099.3.bed | 452 ++ .../FOS_JUN_var.2__MA1126.1.bed | 105 + demo/known_tfbs_chr1_hg38/FOS_MA0476.1.bed | 598 ++ demo/known_tfbs_chr1_hg38/FOXA1_MA0148.3.bed | 349 + demo/known_tfbs_chr1_hg38/FOXB1_MA0845.1.bed | 349 + demo/known_tfbs_chr1_hg38/FOXC1_MA0032.2.bed | 466 ++ demo/known_tfbs_chr1_hg38/FOXC2_MA0846.1.bed | 580 ++ demo/known_tfbs_chr1_hg38/FOXD1_MA0031.1.bed | 0 demo/known_tfbs_chr1_hg38/FOXD2_MA0847.1.bed | 235 + demo/known_tfbs_chr1_hg38/FOXF2_MA0030.1.bed | 118 + demo/known_tfbs_chr1_hg38/FOXG1_MA0613.1.bed | 118 + demo/known_tfbs_chr1_hg38/FOXH1_MA0479.1.bed | 230 + demo/known_tfbs_chr1_hg38/FOXI1_MA0042.2.bed | 0 demo/known_tfbs_chr1_hg38/FOXK1_MA0852.2.bed | 233 + demo/known_tfbs_chr1_hg38/FOXK2_MA1103.1.bed | 233 + demo/known_tfbs_chr1_hg38/FOXL1_MA0033.2.bed | 0 demo/known_tfbs_chr1_hg38/FOXO3_MA0157.2.bed | 233 + demo/known_tfbs_chr1_hg38/FOXO4_MA0848.1.bed | 235 + demo/known_tfbs_chr1_hg38/FOXO6_MA0849.1.bed | 0 demo/known_tfbs_chr1_hg38/FOXP1_MA0481.2.bed | 234 + demo/known_tfbs_chr1_hg38/FOXP2_MA0593.1.bed | 464 ++ demo/known_tfbs_chr1_hg38/FOXP3_MA0850.1.bed | 0 demo/known_tfbs_chr1_hg38/Foxa2_MA0047.2.bed | 234 + demo/known_tfbs_chr1_hg38/Foxd3_MA0041.1.bed | 811 ++ demo/known_tfbs_chr1_hg38/Foxj2_MA0614.1.bed | 118 + demo/known_tfbs_chr1_hg38/Foxj3_MA0851.1.bed | 349 + demo/known_tfbs_chr1_hg38/Foxo1_MA0480.1.bed | 463 ++ demo/known_tfbs_chr1_hg38/Foxq1_MA0040.1.bed | 233 + .../GATA1_TAL1_MA0140.2.bed | 109 + demo/known_tfbs_chr1_hg38/GATA2_MA0036.3.bed | 117 + demo/known_tfbs_chr1_hg38/GATA3_MA0037.3.bed | 0 demo/known_tfbs_chr1_hg38/GATA5_MA0766.1.bed | 0 demo/known_tfbs_chr1_hg38/GATA6_MA1104.1.bed | 118 + demo/known_tfbs_chr1_hg38/GBX1_MA0889.1.bed | 0 demo/known_tfbs_chr1_hg38/GBX2_MA0890.1.bed | 0 demo/known_tfbs_chr1_hg38/GCM1_MA0646.1.bed | 120 + demo/known_tfbs_chr1_hg38/GCM2_MA0767.1.bed | 0 demo/known_tfbs_chr1_hg38/GLI2_MA0734.1.bed | 237 + demo/known_tfbs_chr1_hg38/GLIS1_MA0735.1.bed | 231 + demo/known_tfbs_chr1_hg38/GLIS2_MA0736.1.bed | 467 ++ demo/known_tfbs_chr1_hg38/GLIS3_MA0737.1.bed | 234 + demo/known_tfbs_chr1_hg38/GMEB2_MA0862.1.bed | 0 demo/known_tfbs_chr1_hg38/GRHL1_MA0647.1.bed | 0 demo/known_tfbs_chr1_hg38/GRHL2_MA1105.1.bed | 117 + demo/known_tfbs_chr1_hg38/GSC2_MA0891.1.bed | 0 demo/known_tfbs_chr1_hg38/GSC_MA0648.1.bed | 0 demo/known_tfbs_chr1_hg38/GSX1_MA0892.1.bed | 0 demo/known_tfbs_chr1_hg38/GSX2_MA0893.1.bed | 119 + demo/known_tfbs_chr1_hg38/Gabpa_MA0062.2.bed | 700 ++ demo/known_tfbs_chr1_hg38/Gata1_MA0035.3.bed | 118 + demo/known_tfbs_chr1_hg38/Gata4_MA0482.1.bed | 118 + demo/known_tfbs_chr1_hg38/Gfi1_MA0038.1.bed | 237 + demo/known_tfbs_chr1_hg38/Gfi1b_MA0483.1.bed | 464 ++ demo/known_tfbs_chr1_hg38/Gmeb1_MA0615.1.bed | 0 demo/known_tfbs_chr1_hg38/HES5_MA0821.1.bed | 121 + demo/known_tfbs_chr1_hg38/HES7_MA0822.1.bed | 121 + demo/known_tfbs_chr1_hg38/HESX1_MA0894.1.bed | 0 demo/known_tfbs_chr1_hg38/HEY1_MA0823.1.bed | 120 + demo/known_tfbs_chr1_hg38/HEY2_MA0649.1.bed | 120 + demo/known_tfbs_chr1_hg38/HIC2_MA0738.1.bed | 120 + demo/known_tfbs_chr1_hg38/HIF1A_MA1106.1.bed | 0 demo/known_tfbs_chr1_hg38/HINFP_MA0131.2.bed | 468 ++ demo/known_tfbs_chr1_hg38/HLF_MA0043.2.bed | 0 demo/known_tfbs_chr1_hg38/HLTF_MA0109.1.bed | 118 + demo/known_tfbs_chr1_hg38/HMBOX1_MA0895.1.bed | 0 demo/known_tfbs_chr1_hg38/HNF1A_MA0046.2.bed | 349 + demo/known_tfbs_chr1_hg38/HNF1B_MA0153.2.bed | 234 + demo/known_tfbs_chr1_hg38/HNF4G_MA0484.1.bed | 350 + demo/known_tfbs_chr1_hg38/HOXA10_MA0899.1.bed | 229 + demo/known_tfbs_chr1_hg38/HOXA13_MA0650.1.bed | 229 + demo/known_tfbs_chr1_hg38/HOXA2_MA0900.1.bed | 0 demo/known_tfbs_chr1_hg38/HOXA5_MA0158.1.bed | 117 + demo/known_tfbs_chr1_hg38/HOXB13_MA0901.1.bed | 229 + demo/known_tfbs_chr1_hg38/HOXB2_MA0902.1.bed | 0 demo/known_tfbs_chr1_hg38/HOXB3_MA0903.1.bed | 0 demo/known_tfbs_chr1_hg38/HOXC10_MA0905.1.bed | 0 demo/known_tfbs_chr1_hg38/HOXC11_MA0651.1.bed | 0 demo/known_tfbs_chr1_hg38/HOXC12_MA0906.1.bed | 0 demo/known_tfbs_chr1_hg38/HOXC13_MA0907.1.bed | 115 + demo/known_tfbs_chr1_hg38/HOXD11_MA0908.1.bed | 0 demo/known_tfbs_chr1_hg38/HOXD12_MA0873.1.bed | 0 demo/known_tfbs_chr1_hg38/HOXD13_MA0909.1.bed | 229 + demo/known_tfbs_chr1_hg38/HSF1_MA0486.2.bed | 118 + demo/known_tfbs_chr1_hg38/HSF2_MA0770.1.bed | 119 + demo/known_tfbs_chr1_hg38/HSF4_MA0771.1.bed | 118 + .../Hand1_Tcf3_MA0092.1.bed | 219 + demo/known_tfbs_chr1_hg38/Hes1_MA1099.1.bed | 121 + demo/known_tfbs_chr1_hg38/Hes2_MA0616.1.bed | 0 demo/known_tfbs_chr1_hg38/Hic1_MA0739.1.bed | 120 + demo/known_tfbs_chr1_hg38/Hmx1_MA0896.1.bed | 0 demo/known_tfbs_chr1_hg38/Hmx2_MA0897.1.bed | 118 + demo/known_tfbs_chr1_hg38/Hmx3_MA0898.1.bed | 119 + demo/known_tfbs_chr1_hg38/Hnf4a_MA0114.3.bed | 234 + demo/known_tfbs_chr1_hg38/Hoxa11_MA0911.1.bed | 0 demo/known_tfbs_chr1_hg38/Hoxa9_MA0594.1.bed | 117 + demo/known_tfbs_chr1_hg38/Hoxb5_MA0904.1.bed | 117 + demo/known_tfbs_chr1_hg38/Hoxc9_MA0485.1.bed | 117 + demo/known_tfbs_chr1_hg38/Hoxd3_MA0912.1.bed | 117 + demo/known_tfbs_chr1_hg38/Hoxd8_MA0910.1.bed | 349 + demo/known_tfbs_chr1_hg38/Hoxd9_MA0913.1.bed | 233 + demo/known_tfbs_chr1_hg38/ID4_MA0824.1.bed | 480 ++ demo/known_tfbs_chr1_hg38/INSM1_MA0155.1.bed | 699 ++ demo/known_tfbs_chr1_hg38/IRF1_MA0050.2.bed | 3869 +++++++++ demo/known_tfbs_chr1_hg38/IRF2_MA0051.1.bed | 580 ++ demo/known_tfbs_chr1_hg38/IRF3_MA1418.1.bed | 1058 +++ demo/known_tfbs_chr1_hg38/IRF4_MA1419.1.bed | 471 ++ demo/known_tfbs_chr1_hg38/IRF5_MA1420.1.bed | 354 + demo/known_tfbs_chr1_hg38/IRF7_MA0772.1.bed | 823 ++ demo/known_tfbs_chr1_hg38/IRF8_MA0652.1.bed | 586 ++ demo/known_tfbs_chr1_hg38/IRF9_MA0653.1.bed | 934 +++ demo/known_tfbs_chr1_hg38/ISL2_MA0914.1.bed | 0 demo/known_tfbs_chr1_hg38/ISX_MA0654.1.bed | 0 demo/known_tfbs_chr1_hg38/Id2_MA0617.1.bed | 121 + demo/known_tfbs_chr1_hg38/JDP2_MA0655.1.bed | 471 ++ .../JDP2_var.2__MA0656.1.bed | 215 + demo/known_tfbs_chr1_hg38/JUNB_MA0490.1.bed | 472 ++ .../JUNB_var.2__MA1140.1.bed | 109 + demo/known_tfbs_chr1_hg38/JUND_MA0491.1.bed | 588 ++ .../JUND_var.2__MA0492.1.bed | 322 + .../JUN_JUNB_MA1132.1.bed | 335 + .../JUN_JUNB_var.2__MA1133.1.bed | 205 + demo/known_tfbs_chr1_hg38/JUN_MA0488.1.bed | 240 + .../JUN_var.2__MA0489.1.bed | 543 ++ demo/known_tfbs_chr1_hg38/KLF13_MA0657.1.bed | 236 + demo/known_tfbs_chr1_hg38/KLF14_MA0740.1.bed | 1518 ++++ demo/known_tfbs_chr1_hg38/KLF16_MA0741.1.bed | 3025 +++++++ demo/known_tfbs_chr1_hg38/KLF4_MA0039.3.bed | 475 ++ demo/known_tfbs_chr1_hg38/KLF5_MA0599.1.bed | 3766 +++++++++ demo/known_tfbs_chr1_hg38/KLF9_MA1107.1.bed | 2003 +++++ demo/known_tfbs_chr1_hg38/Klf12_MA0742.1.bed | 935 +++ demo/known_tfbs_chr1_hg38/Klf1_MA0493.1.bed | 1301 +++ demo/known_tfbs_chr1_hg38/LBX1_MA0618.1.bed | 0 demo/known_tfbs_chr1_hg38/LBX2_MA0699.1.bed | 0 demo/known_tfbs_chr1_hg38/LEF1_MA0768.1.bed | 353 + demo/known_tfbs_chr1_hg38/LHX2_MA0700.1.bed | 0 demo/known_tfbs_chr1_hg38/LHX6_MA0658.1.bed | 0 demo/known_tfbs_chr1_hg38/LHX9_MA0701.1.bed | 0 demo/known_tfbs_chr1_hg38/LIN54_MA0619.1.bed | 464 ++ demo/known_tfbs_chr1_hg38/LMX1A_MA0702.1.bed | 0 demo/known_tfbs_chr1_hg38/LMX1B_MA0703.1.bed | 117 + demo/known_tfbs_chr1_hg38/Lhx3_MA0135.1.bed | 236 + demo/known_tfbs_chr1_hg38/Lhx4_MA0704.1.bed | 0 demo/known_tfbs_chr1_hg38/Lhx8_MA0705.1.bed | 0 demo/known_tfbs_chr1_hg38/MAFF_MA0495.2.bed | 355 + demo/known_tfbs_chr1_hg38/MAFG_MA0659.1.bed | 119 + .../MAFG_NFE2L1_MA0089.1.bed | 429 + demo/known_tfbs_chr1_hg38/MAFK_MA0496.2.bed | 237 + .../MAF_NFE2_MA0501.1.bed | 335 + demo/known_tfbs_chr1_hg38/MAX_MA0058.3.bed | 122 + .../known_tfbs_chr1_hg38/MAX_MYC_MA0059.1.bed | 115 + demo/known_tfbs_chr1_hg38/MEF2A_MA0052.3.bed | 580 ++ demo/known_tfbs_chr1_hg38/MEF2B_MA0660.1.bed | 350 + demo/known_tfbs_chr1_hg38/MEF2C_MA0497.1.bed | 809 ++ demo/known_tfbs_chr1_hg38/MEF2D_MA0773.1.bed | 465 ++ demo/known_tfbs_chr1_hg38/MEIS1_MA0498.2.bed | 0 demo/known_tfbs_chr1_hg38/MEIS2_MA0774.1.bed | 118 + demo/known_tfbs_chr1_hg38/MEIS3_MA0775.1.bed | 233 + demo/known_tfbs_chr1_hg38/MEOX1_MA0661.1.bed | 0 demo/known_tfbs_chr1_hg38/MEOX2_MA0706.1.bed | 0 demo/known_tfbs_chr1_hg38/MGA_MA0801.1.bed | 239 + demo/known_tfbs_chr1_hg38/MITF_MA0620.2.bed | 236 + demo/known_tfbs_chr1_hg38/MIXL1_MA0662.1.bed | 0 demo/known_tfbs_chr1_hg38/MLXIPL_MA0664.1.bed | 116 + demo/known_tfbs_chr1_hg38/MLX_MA0663.1.bed | 121 + demo/known_tfbs_chr1_hg38/MNT_MA0825.1.bed | 122 + demo/known_tfbs_chr1_hg38/MNX1_MA0707.1.bed | 119 + demo/known_tfbs_chr1_hg38/MSC_MA0665.1.bed | 360 + demo/known_tfbs_chr1_hg38/MSX1_MA0666.1.bed | 0 demo/known_tfbs_chr1_hg38/MSX2_MA0708.1.bed | 0 demo/known_tfbs_chr1_hg38/MTF1_MA0863.1.bed | 120 + demo/known_tfbs_chr1_hg38/MXI1_MA1108.1.bed | 237 + demo/known_tfbs_chr1_hg38/MYBL1_MA0776.1.bed | 0 demo/known_tfbs_chr1_hg38/MYBL2_MA0777.1.bed | 0 demo/known_tfbs_chr1_hg38/MYB_MA0100.3.bed | 122 + demo/known_tfbs_chr1_hg38/MYCN_MA0104.4.bed | 356 + demo/known_tfbs_chr1_hg38/MYC_MA0147.3.bed | 241 + demo/known_tfbs_chr1_hg38/MYF6_MA0667.1.bed | 237 + demo/known_tfbs_chr1_hg38/MZF1_MA0056.1.bed | 1883 +++++ .../MZF1_var.2__MA0057.1.bed | 643 ++ demo/known_tfbs_chr1_hg38/Mafb_MA0117.2.bed | 120 + demo/known_tfbs_chr1_hg38/Mecom_MA0029.1.bed | 117 + demo/known_tfbs_chr1_hg38/Mlxip_MA0622.1.bed | 0 demo/known_tfbs_chr1_hg38/Msx3_MA0709.1.bed | 0 demo/known_tfbs_chr1_hg38/Myod1_MA0499.1.bed | 815 ++ demo/known_tfbs_chr1_hg38/Myog_MA0500.1.bed | 825 ++ .../known_tfbs_chr1_hg38/NEUROD1_MA1109.1.bed | 340 + .../known_tfbs_chr1_hg38/NEUROD2_MA0668.1.bed | 0 .../known_tfbs_chr1_hg38/NEUROG2_MA0669.1.bed | 114 + demo/known_tfbs_chr1_hg38/NFAT5_MA0606.1.bed | 575 ++ demo/known_tfbs_chr1_hg38/NFATC1_MA0624.1.bed | 342 + demo/known_tfbs_chr1_hg38/NFATC2_MA0152.1.bed | 229 + demo/known_tfbs_chr1_hg38/NFATC3_MA0625.1.bed | 342 + demo/known_tfbs_chr1_hg38/NFE2_MA0841.1.bed | 354 + demo/known_tfbs_chr1_hg38/NFIA_MA0670.1.bed | 119 + demo/known_tfbs_chr1_hg38/NFIC_MA0161.2.bed | 237 + .../NFIC_TLX1_MA0119.1.bed | 220 + demo/known_tfbs_chr1_hg38/NFIL3_MA0025.1.bed | 117 + demo/known_tfbs_chr1_hg38/NFIX_MA0671.1.bed | 119 + demo/known_tfbs_chr1_hg38/NFKB1_MA0105.4.bed | 699 ++ demo/known_tfbs_chr1_hg38/NFKB2_MA0778.1.bed | 697 ++ demo/known_tfbs_chr1_hg38/NFYA_MA0060.3.bed | 354 + demo/known_tfbs_chr1_hg38/NFYB_MA0502.1.bed | 355 + demo/known_tfbs_chr1_hg38/NHLH1_MA0048.2.bed | 929 +++ demo/known_tfbs_chr1_hg38/NKX2_3_MA0672.1.bed | 117 + demo/known_tfbs_chr1_hg38/NKX2_8_MA0673.1.bed | 116 + demo/known_tfbs_chr1_hg38/NKX3_2_MA0122.2.bed | 0 demo/known_tfbs_chr1_hg38/NKX6_1_MA0674.1.bed | 116 + demo/known_tfbs_chr1_hg38/NKX6_2_MA0675.1.bed | 115 + demo/known_tfbs_chr1_hg38/NOTO_MA0710.1.bed | 0 .../NR1A4_RXRA_MA1146.1.bed | 110 + .../NR1H2_RXRA_MA0115.1.bed | 212 + demo/known_tfbs_chr1_hg38/NR1H4_MA1110.1.bed | 117 + demo/known_tfbs_chr1_hg38/NR2C2_MA0504.1.bed | 929 +++ demo/known_tfbs_chr1_hg38/NR2F1_MA0017.2.bed | 350 + demo/known_tfbs_chr1_hg38/NR2F2_MA1111.1.bed | 233 + demo/known_tfbs_chr1_hg38/NR3C1_MA0113.3.bed | 117 + demo/known_tfbs_chr1_hg38/NR3C2_MA0727.1.bed | 117 + demo/known_tfbs_chr1_hg38/NR4A1_MA1112.1.bed | 118 + demo/known_tfbs_chr1_hg38/NR4A2_MA0160.1.bed | 118 + .../NR4A2_RXRA_MA1147.1.bed | 110 + demo/known_tfbs_chr1_hg38/NRF1_MA0506.1.bed | 1889 +++++ demo/known_tfbs_chr1_hg38/NRL_MA0842.1.bed | 239 + .../known_tfbs_chr1_hg38/Neurog1_MA0623.1.bed | 0 demo/known_tfbs_chr1_hg38/Nfe2l2_MA0150.2.bed | 231 + demo/known_tfbs_chr1_hg38/Nkx2_5_MA0063.1.bed | 0 .../Nkx2_5_var.2__MA0503.1.bed | 313 + demo/known_tfbs_chr1_hg38/Nkx3_1_MA0124.2.bed | 115 + demo/known_tfbs_chr1_hg38/Nobox_MA0125.1.bed | 0 demo/known_tfbs_chr1_hg38/Npas2_MA0626.1.bed | 118 + .../Nr1h3_Rxra_MA0494.1.bed | 217 + demo/known_tfbs_chr1_hg38/Nr2e1_MA0676.1.bed | 233 + demo/known_tfbs_chr1_hg38/Nr2e3_MA0164.1.bed | 0 demo/known_tfbs_chr1_hg38/Nr2f6_MA0677.1.bed | 235 + .../Nr2f6_var.2__MA0728.1.bed | 210 + demo/known_tfbs_chr1_hg38/Nr5a2_MA0505.1.bed | 350 + demo/known_tfbs_chr1_hg38/OLIG1_MA0826.1.bed | 0 demo/known_tfbs_chr1_hg38/OLIG2_MA0678.1.bed | 0 demo/known_tfbs_chr1_hg38/OLIG3_MA0827.1.bed | 0 .../known_tfbs_chr1_hg38/ONECUT1_MA0679.1.bed | 0 .../known_tfbs_chr1_hg38/ONECUT2_MA0756.1.bed | 114 + .../known_tfbs_chr1_hg38/ONECUT3_MA0757.1.bed | 227 + demo/known_tfbs_chr1_hg38/OTX1_MA0711.1.bed | 0 demo/known_tfbs_chr1_hg38/OTX2_MA0712.1.bed | 0 demo/known_tfbs_chr1_hg38/PAX1_MA0779.1.bed | 0 demo/known_tfbs_chr1_hg38/PAX3_MA0780.1.bed | 0 demo/known_tfbs_chr1_hg38/PAX4_MA0068.2.bed | 0 demo/known_tfbs_chr1_hg38/PAX5_MA0014.3.bed | 239 + demo/known_tfbs_chr1_hg38/PAX7_MA0680.1.bed | 118 + demo/known_tfbs_chr1_hg38/PAX9_MA0781.1.bed | 0 demo/known_tfbs_chr1_hg38/PBX1_MA0070.1.bed | 0 demo/known_tfbs_chr1_hg38/PBX2_MA1113.1.bed | 236 + demo/known_tfbs_chr1_hg38/PBX3_MA1114.1.bed | 471 ++ demo/known_tfbs_chr1_hg38/PDX1_MA0132.2.bed | 0 demo/known_tfbs_chr1_hg38/PHOX2A_MA0713.1.bed | 228 + demo/known_tfbs_chr1_hg38/PITX3_MA0714.1.bed | 0 demo/known_tfbs_chr1_hg38/PKNOX1_MA0782.1.bed | 230 + demo/known_tfbs_chr1_hg38/PKNOX2_MA0783.1.bed | 231 + demo/known_tfbs_chr1_hg38/PLAG1_MA0163.1.bed | 1385 ++++ demo/known_tfbs_chr1_hg38/POU1F1_MA0784.1.bed | 457 ++ demo/known_tfbs_chr1_hg38/POU2F1_MA0785.1.bed | 343 + demo/known_tfbs_chr1_hg38/POU2F2_MA0507.1.bed | 458 ++ demo/known_tfbs_chr1_hg38/POU3F1_MA0786.1.bed | 457 ++ demo/known_tfbs_chr1_hg38/POU3F2_MA0787.1.bed | 455 ++ demo/known_tfbs_chr1_hg38/POU3F3_MA0788.1.bed | 457 ++ demo/known_tfbs_chr1_hg38/POU3F4_MA0789.1.bed | 230 + demo/known_tfbs_chr1_hg38/POU4F1_MA0790.1.bed | 344 + demo/known_tfbs_chr1_hg38/POU4F2_MA0683.1.bed | 230 + demo/known_tfbs_chr1_hg38/POU4F3_MA0791.1.bed | 344 + .../known_tfbs_chr1_hg38/POU5F1B_MA0792.1.bed | 339 + demo/known_tfbs_chr1_hg38/POU5F1_MA1115.1.bed | 458 ++ demo/known_tfbs_chr1_hg38/POU6F1_MA0628.1.bed | 116 + demo/known_tfbs_chr1_hg38/POU6F2_MA0793.1.bed | 115 + .../PPARA_RXRA_MA1148.1.bed | 219 + demo/known_tfbs_chr1_hg38/PPARG_MA0066.1.bed | 233 + demo/known_tfbs_chr1_hg38/PRDM1_MA0508.2.bed | 463 ++ demo/known_tfbs_chr1_hg38/PROP1_MA0715.1.bed | 347 + demo/known_tfbs_chr1_hg38/PROX1_MA0794.1.bed | 0 demo/known_tfbs_chr1_hg38/PRRX1_MA0716.1.bed | 0 demo/known_tfbs_chr1_hg38/Pax2_MA0067.1.bed | 0 demo/known_tfbs_chr1_hg38/Pax6_MA0069.1.bed | 0 demo/known_tfbs_chr1_hg38/Phox2b_MA0681.1.bed | 116 + demo/known_tfbs_chr1_hg38/Pitx1_MA0682.1.bed | 0 demo/known_tfbs_chr1_hg38/Pou2f3_MA0627.1.bed | 343 + .../Pou5f1_Sox2_MA0142.1.bed | 533 ++ .../Pparg_Rxra_MA0065.2.bed | 760 ++ demo/known_tfbs_chr1_hg38/Prrx2_MA0075.2.bed | 0 demo/known_tfbs_chr1_hg38/RARA_MA0729.1.bed | 117 + .../RARA_RXRA_MA0159.1.bed | 330 + .../RARA_RXRG_MA1149.1.bed | 332 + .../RARA_var.2__MA0730.1.bed | 216 + demo/known_tfbs_chr1_hg38/RAX2_MA0717.1.bed | 0 demo/known_tfbs_chr1_hg38/RAX_MA0718.1.bed | 0 demo/known_tfbs_chr1_hg38/RBPJ_MA1116.1.bed | 590 ++ 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ASCL1_MA1100.1 9.338223163232671 - +chr1 226407577 226407589 ASCL1_MA1100.1 7.357477231142934 + +chr1 226407578 226407590 ASCL1_MA1100.1 9.519979835412439 - +chr1 226407804 226407816 ASCL1_MA1100.1 7.088590352558474 - +chr1 226445228 226445240 ASCL1_MA1100.1 7.881035276354969 + +chr1 226653540 226653552 ASCL1_MA1100.1 8.551415870369654 + +chr1 226653825 226653837 ASCL1_MA1100.1 7.768236804247535 + +chr1 226680267 226680279 ASCL1_MA1100.1 9.082207832637742 - +chr1 226737175 226737187 ASCL1_MA1100.1 6.986370396062325 - +chr1 226870608 226870620 ASCL1_MA1100.1 8.280778117753901 - +chr1 227542798 227542810 ASCL1_MA1100.1 11.145386625050069 - +chr1 227563608 227563620 ASCL1_MA1100.1 9.963413406490762 - +chr1 227728231 227728243 ASCL1_MA1100.1 6.900257293771718 - +chr1 227735021 227735033 ASCL1_MA1100.1 8.183301664327859 + +chr1 228406511 228406523 ASCL1_MA1100.1 7.400527641348472 + +chr1 228457557 228457569 ASCL1_MA1100.1 9.916427758157544 - +chr1 228457562 228457574 ASCL1_MA1100.1 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a/demo/known_tfbs_chr1_hg38/ATF7_MA0834.1.bed b/demo/known_tfbs_chr1_hg38/ATF7_MA0834.1.bed new file mode 100644 index 0000000..c62481e --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/ATF7_MA0834.1.bed @@ -0,0 +1,120 @@ +chr1 778685 778698 ATF7_MA0834.1 9.728023036523457 + +chr1 778685 778698 ATF7_MA0834.1 10.413154069762760 - +chr1 778710 778723 ATF7_MA0834.1 10.700124782563730 + +chr1 778710 778723 ATF7_MA0834.1 11.016528981961999 - +chr1 1033066 1033079 ATF7_MA0834.1 7.410593564971547 + +chr1 1033066 1033079 ATF7_MA0834.1 7.636409010808356 - +chr1 1349441 1349454 ATF7_MA0834.1 6.060317228522699 + +chr1 1349441 1349454 ATF7_MA0834.1 6.319911149025000 - +chr1 1471680 1471693 ATF7_MA0834.1 6.394695363356831 + +chr1 1471680 1471693 ATF7_MA0834.1 5.075188348049931 - +chr1 1512064 1512077 ATF7_MA0834.1 6.394695363356831 + +chr1 1512064 1512077 ATF7_MA0834.1 5.075188348049931 - +chr1 1574937 1574950 ATF7_MA0834.1 6.393695342867836 + +chr1 2412568 2412581 ATF7_MA0834.1 6.298297689300163 + 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4.685819344431668 - +chr1 99759278 99759291 ATF7_MA0834.1 5.073914780917243 + +chr1 99759278 99759291 ATF7_MA0834.1 4.857976529435187 - +chr1 100377840 100377853 ATF7_MA0834.1 5.009679227548450 + diff --git a/demo/known_tfbs_chr1_hg38/Ahr_Arnt_MA0006.1.bed b/demo/known_tfbs_chr1_hg38/Ahr_Arnt_MA0006.1.bed new file mode 100644 index 0000000..2c7a290 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/Ahr_Arnt_MA0006.1.bed @@ -0,0 +1,447 @@ +chr1 778736 778741 Ahr_Arnt_MA0006.1 7.409911382890194 - +chr1 827443 827448 Ahr_Arnt_MA0006.1 7.409911382890194 + +chr1 1033362 1033367 Ahr_Arnt_MA0006.1 7.409911382890194 - +chr1 1407401 1407406 Ahr_Arnt_MA0006.1 7.409911382890194 + +chr1 1615377 1615382 Ahr_Arnt_MA0006.1 7.409911382890194 - +chr1 1615635 1615640 Ahr_Arnt_MA0006.1 7.409911382890194 + +chr1 1678218 1678223 Ahr_Arnt_MA0006.1 7.409911382890194 + +chr1 1678222 1678227 Ahr_Arnt_MA0006.1 7.409911382890194 + +chr1 1692435 1692440 Ahr_Arnt_MA0006.1 7.409911382890194 - +chr1 1692894 1692899 Ahr_Arnt_MA0006.1 7.409911382890194 - +chr1 1746169 1746174 Ahr_Arnt_MA0006.1 7.409911382890194 - +chr1 1778487 1778492 Ahr_Arnt_MA0006.1 7.409911382890194 - +chr1 1890472 1890477 Ahr_Arnt_MA0006.1 7.409911382890194 - +chr1 1891125 1891130 Ahr_Arnt_MA0006.1 7.409911382890194 - +chr1 1919440 1919445 Ahr_Arnt_MA0006.1 7.409911382890194 - +chr1 1919518 1919523 Ahr_Arnt_MA0006.1 7.409911382890194 - +chr1 2227526 2227531 Ahr_Arnt_MA0006.1 7.409911382890194 + +chr1 2412590 2412595 Ahr_Arnt_MA0006.1 7.409911382890194 + +chr1 2548112 2548117 Ahr_Arnt_MA0006.1 7.409911382890194 - +chr1 2555669 2555674 Ahr_Arnt_MA0006.1 7.409911382890194 + +chr1 2556064 2556069 Ahr_Arnt_MA0006.1 7.409911382890194 - +chr1 2655525 2655530 Ahr_Arnt_MA0006.1 7.409911382890194 - +chr1 2683785 2683790 Ahr_Arnt_MA0006.1 7.409911382890194 - +chr1 2684227 2684232 Ahr_Arnt_MA0006.1 7.409911382890194 - +chr1 2750396 2750401 Ahr_Arnt_MA0006.1 7.409911382890194 - +chr1 3666558 3666563 Ahr_Arnt_MA0006.1 7.409911382890194 + 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Ahr_Arnt_MA0006.1 7.409911382890194 + +chr1 10398749 10398754 Ahr_Arnt_MA0006.1 7.409911382890194 + +chr1 10986007 10986012 Ahr_Arnt_MA0006.1 7.409911382890194 - +chr1 10986140 10986145 Ahr_Arnt_MA0006.1 7.409911382890194 - +chr1 11099897 11099902 Ahr_Arnt_MA0006.1 7.409911382890194 - +chr1 11273487 11273492 Ahr_Arnt_MA0006.1 7.409911382890194 + +chr1 11664215 11664220 Ahr_Arnt_MA0006.1 7.409911382890194 - +chr1 11681523 11681528 Ahr_Arnt_MA0006.1 7.409911382890194 - +chr1 11736368 11736373 Ahr_Arnt_MA0006.1 7.409911382890194 - +chr1 11908646 11908651 Ahr_Arnt_MA0006.1 7.409911382890194 + +chr1 11934691 11934696 Ahr_Arnt_MA0006.1 7.409911382890194 + +chr1 12040039 12040044 Ahr_Arnt_MA0006.1 7.409911382890194 + +chr1 12040729 12040734 Ahr_Arnt_MA0006.1 7.409911382890194 - +chr1 13749056 13749061 Ahr_Arnt_MA0006.1 7.409911382890194 + +chr1 15835911 15835916 Ahr_Arnt_MA0006.1 7.409911382890194 + +chr1 16367174 16367179 Ahr_Arnt_MA0006.1 7.409911382890194 + +chr1 16905146 16905151 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212699366 Arnt_MA0004.1 8.043307199376844 + +chr1 212699361 212699366 Arnt_MA0004.1 8.043307199376844 - +chr1 212700105 212700110 Arnt_MA0004.1 8.043307199376844 + +chr1 212700105 212700110 Arnt_MA0004.1 8.043307199376844 - +chr1 212959965 212959970 Arnt_MA0004.1 8.043307199376844 + +chr1 212959965 212959970 Arnt_MA0004.1 8.043307199376844 - +chr1 214281613 214281618 Arnt_MA0004.1 8.043307199376844 + +chr1 214281613 214281618 Arnt_MA0004.1 8.043307199376844 - +chr1 214603002 214603007 Arnt_MA0004.1 8.043307199376844 + +chr1 214603002 214603007 Arnt_MA0004.1 8.043307199376844 - +chr1 217482816 217482821 Arnt_MA0004.1 8.043307199376844 + +chr1 217482816 217482821 Arnt_MA0004.1 8.043307199376844 - +chr1 217620934 217620939 Arnt_MA0004.1 8.043307199376844 + +chr1 217620934 217620939 Arnt_MA0004.1 8.043307199376844 - +chr1 218285339 218285344 Arnt_MA0004.1 8.043307199376844 + +chr1 218285339 218285344 Arnt_MA0004.1 8.043307199376844 - +chr1 218345287 218345292 Arnt_MA0004.1 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26500579 Arntl_MA0603.1 9.861247249385112 - +chr1 26500629 26500638 Arntl_MA0603.1 7.491788862690749 + +chr1 26500979 26500988 Arntl_MA0603.1 8.371810251116388 - +chr1 27322386 27322395 Arntl_MA0603.1 8.404269643877972 + +chr1 27322388 27322397 Arntl_MA0603.1 8.365202179503216 - +chr1 27726315 27726324 Arntl_MA0603.1 8.502608641499977 + +chr1 31788409 31788418 Arntl_MA0603.1 7.627831160310970 + +chr1 32013617 32013626 Arntl_MA0603.1 7.416699783199644 + +chr1 32013640 32013649 Arntl_MA0603.1 9.303590399128673 + +chr1 32351604 32351613 Arntl_MA0603.1 8.365202179503216 + +chr1 32351606 32351615 Arntl_MA0603.1 8.365202179503216 - +chr1 32650968 32650977 Arntl_MA0603.1 8.396577298994472 + +chr1 32650970 32650979 Arntl_MA0603.1 9.900314713759869 - +chr1 33431139 33431148 Arntl_MA0603.1 9.211859473119841 + +chr1 35031755 35031764 Arntl_MA0603.1 9.211859473119841 + +chr1 35641771 35641780 Arntl_MA0603.1 7.472449894762848 + +chr1 36149317 36149326 Arntl_MA0603.1 7.491788862690749 + +chr1 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a/demo/known_tfbs_chr1_hg38/Arx_MA0874.1.bed b/demo/known_tfbs_chr1_hg38/Arx_MA0874.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/Ascl2_MA0816.1.bed b/demo/known_tfbs_chr1_hg38/Ascl2_MA0816.1.bed new file mode 100644 index 0000000..5fca1c0 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/Ascl2_MA0816.1.bed @@ -0,0 +1,813 @@ +chr1 1407531 1407540 Ascl2_MA0816.1 7.342988196766259 - +chr1 1678578 1678587 Ascl2_MA0816.1 9.191733628925551 + +chr1 1678578 1678587 Ascl2_MA0816.1 8.699275511818319 - +chr1 1778995 1779004 Ascl2_MA0816.1 9.520876572322768 + +chr1 1778995 1779004 Ascl2_MA0816.1 9.608356454602196 - +chr1 2133305 2133314 Ascl2_MA0816.1 7.837006485714848 + +chr1 2290685 2290694 Ascl2_MA0816.1 7.589734359786201 + +chr1 2391674 2391683 Ascl2_MA0816.1 7.636335958602724 + +chr1 2391674 2391683 Ascl2_MA0816.1 7.636335958602724 - +chr1 2643101 2643110 Ascl2_MA0816.1 10.024200635221826 + +chr1 2643101 2643110 Ascl2_MA0816.1 9.874624183082270 - +chr1 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8097628 8097637 Ascl2_MA0816.1 8.632118138609012 - +chr1 8283444 8283453 Ascl2_MA0816.1 7.868713927175872 + +chr1 8283444 8283453 Ascl2_MA0816.1 7.943686405679568 - +chr1 8427575 8427584 Ascl2_MA0816.1 7.846312259665318 + +chr1 8427731 8427740 Ascl2_MA0816.1 8.376189565252252 + +chr1 8764047 8764056 Ascl2_MA0816.1 8.283067439139423 + +chr1 8764180 8764189 Ascl2_MA0816.1 8.797427106440445 + +chr1 8764180 8764189 Ascl2_MA0816.1 9.721547099434893 - +chr1 9163326 9163335 Ascl2_MA0816.1 8.218633514677219 + +chr1 9687503 9687512 Ascl2_MA0816.1 7.486986240150008 + +chr1 10494813 10494822 Ascl2_MA0816.1 7.486986240150008 - +chr1 10985764 10985773 Ascl2_MA0816.1 7.296591033083604 - +chr1 11012402 11012411 Ascl2_MA0816.1 7.231057666793246 + +chr1 11059822 11059831 Ascl2_MA0816.1 11.492897068322241 + +chr1 11059822 11059831 Ascl2_MA0816.1 11.492897068322241 - +chr1 11681513 11681522 Ascl2_MA0816.1 8.114536552283726 + +chr1 11681513 11681522 Ascl2_MA0816.1 8.396621976031387 - +chr1 11909656 11909665 Ascl2_MA0816.1 8.729492284623264 + +chr1 11909656 11909665 Ascl2_MA0816.1 8.162061689012335 - +chr1 11926183 11926192 Ascl2_MA0816.1 8.169876794306727 + +chr1 12040501 12040510 Ascl2_MA0816.1 8.018275678908001 - +chr1 12078706 12078715 Ascl2_MA0816.1 7.296591033083604 + +chr1 13749250 13749259 Ascl2_MA0816.1 9.088818304138574 + +chr1 13749250 13749259 Ascl2_MA0816.1 9.730852873385361 - +chr1 13749420 13749429 Ascl2_MA0816.1 9.520876572322768 + +chr1 13749420 13749429 Ascl2_MA0816.1 9.608356454602196 - +chr1 15835021 15835030 Ascl2_MA0816.1 8.914659483189707 + +chr1 15847506 15847515 Ascl2_MA0816.1 9.520876572322768 + +chr1 15847506 15847515 Ascl2_MA0816.1 9.608356454602196 - +chr1 16217447 16217456 Ascl2_MA0816.1 8.231768929032988 + +chr1 16352442 16352451 Ascl2_MA0816.1 9.608356454602196 + +chr1 16352442 16352451 Ascl2_MA0816.1 9.520876572322768 - +chr1 16352445 16352454 Ascl2_MA0816.1 8.511981276513684 + +chr1 16352445 16352454 Ascl2_MA0816.1 7.253015128750876 - +chr1 16421026 16421035 Ascl2_MA0816.1 7.986646772931996 - +chr1 18927670 18927679 Ascl2_MA0816.1 7.724927917071538 - +chr1 18956076 18956085 Ascl2_MA0816.1 7.358947446144974 + +chr1 19210091 19210100 Ascl2_MA0816.1 8.082396912027297 + +chr1 19210520 19210529 Ascl2_MA0816.1 7.476179822894236 - +chr1 19312697 19312706 Ascl2_MA0816.1 10.024200635221826 + +chr1 19312697 19312706 Ascl2_MA0816.1 9.874624183082270 - +chr1 19882686 19882695 Ascl2_MA0816.1 8.283067439139423 + +chr1 21293758 21293767 Ascl2_MA0816.1 10.516658752329057 + +chr1 21293758 21293767 Ascl2_MA0816.1 9.382166065975039 - +chr1 21345459 21345468 Ascl2_MA0816.1 8.169876794306727 + +chr1 21783074 21783083 Ascl2_MA0816.1 8.046601730466545 - +chr1 22025631 22025640 Ascl2_MA0816.1 8.195951448919262 + +chr1 22025631 22025640 Ascl2_MA0816.1 8.925465900445477 - +chr1 23368384 23368393 Ascl2_MA0816.1 9.485081390762016 + +chr1 23368384 23368393 Ascl2_MA0816.1 9.485081390762016 - +chr1 23743877 23743886 Ascl2_MA0816.1 7.943686405679568 + 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39883527 Ascl2_MA0816.1 9.874624183082270 - +chr1 39960661 39960670 Ascl2_MA0816.1 7.253015128750876 + +chr1 39960661 39960670 Ascl2_MA0816.1 8.511981276513684 - +chr1 39960664 39960673 Ascl2_MA0816.1 11.492897068322241 + +chr1 39960664 39960673 Ascl2_MA0816.1 11.492897068322241 - +chr1 40373748 40373757 Ascl2_MA0816.1 9.485081390762016 + +chr1 40373748 40373757 Ascl2_MA0816.1 9.485081390762016 - +chr1 40385695 40385704 Ascl2_MA0816.1 7.725077900782134 - +chr1 40450693 40450702 Ascl2_MA0816.1 7.358947446144974 + +chr1 40477317 40477326 Ascl2_MA0816.1 8.396621976031387 + +chr1 40477317 40477326 Ascl2_MA0816.1 8.114536552283726 - +chr1 40628584 40628593 Ascl2_MA0816.1 7.296591033083604 + +chr1 40709087 40709096 Ascl2_MA0816.1 8.797427106440445 + +chr1 40709087 40709096 Ascl2_MA0816.1 9.721547099434893 - +chr1 41361663 41361672 Ascl2_MA0816.1 8.231768929032988 - +chr1 41574371 41574380 Ascl2_MA0816.1 9.608356454602196 + +chr1 41574371 41574380 Ascl2_MA0816.1 9.520876572322768 - +chr1 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209086993 Ascl2_MA0816.1 9.721547099434893 + +chr1 209086984 209086993 Ascl2_MA0816.1 8.797427106440445 - +chr1 209190764 209190773 Ascl2_MA0816.1 8.218633514677219 + +chr1 209827806 209827815 Ascl2_MA0816.1 7.486986240150008 + +chr1 210343207 210343216 Ascl2_MA0816.1 7.335385124751282 + +chr1 210361356 210361365 Ascl2_MA0816.1 7.328730673340029 + +chr1 210361356 210361365 Ascl2_MA0816.1 8.103274214194922 - +chr1 210685354 210685363 Ascl2_MA0816.1 7.726175397569987 - +chr1 211260831 211260840 Ascl2_MA0816.1 8.114536552283726 + +chr1 211260831 211260840 Ascl2_MA0816.1 8.396621976031387 - +chr1 211327416 211327425 Ascl2_MA0816.1 9.268611529083076 + +chr1 211327416 211327425 Ascl2_MA0816.1 8.551604481332591 - +chr1 211336097 211336106 Ascl2_MA0816.1 7.868713927175872 + +chr1 211336097 211336106 Ascl2_MA0816.1 7.943686405679568 - +chr1 211579125 211579134 Ascl2_MA0816.1 8.396621976031387 + +chr1 211579125 211579134 Ascl2_MA0816.1 8.114536552283726 - +chr1 211675817 211675826 Ascl2_MA0816.1 8.046601730466545 - +chr1 212567215 212567224 Ascl2_MA0816.1 8.114536552283726 + +chr1 212567215 212567224 Ascl2_MA0816.1 8.396621976031387 - +chr1 212567372 212567381 Ascl2_MA0816.1 10.054417408026771 + +chr1 212567372 212567381 Ascl2_MA0816.1 8.844952243169054 - +chr1 212567375 212567384 Ascl2_MA0816.1 7.726175397569987 + +chr1 212567385 212567394 Ascl2_MA0816.1 9.428199337598429 + diff --git a/demo/known_tfbs_chr1_hg38/Atf1_MA0604.1.bed b/demo/known_tfbs_chr1_hg38/Atf1_MA0604.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/Atf3_MA0605.1.bed b/demo/known_tfbs_chr1_hg38/Atf3_MA0605.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/Atoh1_MA0461.2.bed b/demo/known_tfbs_chr1_hg38/Atoh1_MA0461.2.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/BACH2_MA1101.1.bed b/demo/known_tfbs_chr1_hg38/BACH2_MA1101.1.bed new file mode 100644 index 0000000..ae5dc49 --- /dev/null +++ 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58996936 BACH2_MA1101.1 8.588429707872320 + +chr1 59007831 59007844 BACH2_MA1101.1 6.819498155597222 + +chr1 60390844 60390857 BACH2_MA1101.1 10.183132181585391 + +chr1 60391088 60391101 BACH2_MA1101.1 8.986957932282341 - +chr1 60391091 60391104 BACH2_MA1101.1 8.759447959710446 + +chr1 60391497 60391510 BACH2_MA1101.1 6.686661594906916 - +chr1 61453560 61453573 BACH2_MA1101.1 10.276484231686050 - +chr1 62122403 62122416 BACH2_MA1101.1 6.728065529387884 + +chr1 62801131 62801144 BACH2_MA1101.1 7.291521787857668 - +chr1 62801273 62801286 BACH2_MA1101.1 7.270654310427848 + +chr1 63125082 63125095 BACH2_MA1101.1 10.057608125846357 - +chr1 64898541 64898554 BACH2_MA1101.1 6.809005711781669 - +chr1 64898544 64898557 BACH2_MA1101.1 7.971533094639115 + +chr1 65067670 65067683 BACH2_MA1101.1 8.537744141277921 + +chr1 65393621 65393634 BACH2_MA1101.1 6.929694078488962 + +chr1 65812132 65812145 BACH2_MA1101.1 6.670309880745039 + +chr1 65895006 65895019 BACH2_MA1101.1 10.411439001769235 + +chr1 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116378083 BACH2_MA1101.1 7.659301983633503 + +chr1 116504528 116504541 BACH2_MA1101.1 9.580187900412227 - +chr1 116556796 116556809 BACH2_MA1101.1 7.216609386640104 + +chr1 116827433 116827446 BACH2_MA1101.1 7.364217196303278 - +chr1 116827436 116827449 BACH2_MA1101.1 9.394780687569423 + +chr1 117001914 117001927 BACH2_MA1101.1 8.048859784151340 - +chr1 117060248 117060261 BACH2_MA1101.1 6.934138684401125 - +chr1 120176289 120176302 BACH2_MA1101.1 7.429189856987072 + +chr1 120558383 120558396 BACH2_MA1101.1 7.204466644666887 - +chr1 120851272 120851285 BACH2_MA1101.1 6.604271086102731 + +chr1 145608172 145608185 BACH2_MA1101.1 7.223907269014587 - +chr1 147928575 147928588 BACH2_MA1101.1 7.223907269014587 - +chr1 148334967 148334980 BACH2_MA1101.1 7.926514015244864 - +chr1 148952528 148952541 BACH2_MA1101.1 7.204466644666887 + +chr1 149997982 149997995 BACH2_MA1101.1 8.091357152477785 - +chr1 150149786 150149799 BACH2_MA1101.1 7.777919435351901 + +chr1 150255683 150255696 BACH2_MA1101.1 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209039613 BACH2_MA1101.1 7.191303894210980 + +chr1 209107713 209107726 BACH2_MA1101.1 8.188858687513211 - +chr1 209607412 209607425 BACH2_MA1101.1 7.057337796511430 + +chr1 209607608 209607621 BACH2_MA1101.1 8.794475174304351 - +chr1 209607611 209607624 BACH2_MA1101.1 6.799206498571760 + +chr1 209627705 209627718 BACH2_MA1101.1 9.045019141411533 - +chr1 209627787 209627800 BACH2_MA1101.1 8.381971174023750 - +chr1 209627790 209627803 BACH2_MA1101.1 7.093673644748570 + +chr1 209673481 209673494 BACH2_MA1101.1 9.334174460019998 - +chr1 209673484 209673497 BACH2_MA1101.1 7.608660455428263 + +chr1 209769532 209769545 BACH2_MA1101.1 6.903994674753639 - +chr1 210374404 210374417 BACH2_MA1101.1 7.669407763882175 - +chr1 210374481 210374494 BACH2_MA1101.1 9.797662421446844 - +chr1 210374484 210374497 BACH2_MA1101.1 7.184318833279233 + +chr1 210394387 210394400 BACH2_MA1101.1 8.815380831797297 - +chr1 210696880 210696893 BACH2_MA1101.1 8.742261296061226 - +chr1 210696883 210696896 BACH2_MA1101.1 7.933921055617235 + +chr1 211515459 211515472 BACH2_MA1101.1 10.776265854153101 - +chr1 211940007 211940020 BACH2_MA1101.1 6.698921626847884 - diff --git a/demo/known_tfbs_chr1_hg38/BARHL2_MA0635.1.bed b/demo/known_tfbs_chr1_hg38/BARHL2_MA0635.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/BARX1_MA0875.1.bed b/demo/known_tfbs_chr1_hg38/BARX1_MA0875.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/BATF3_MA0835.1.bed b/demo/known_tfbs_chr1_hg38/BATF3_MA0835.1.bed new file mode 100644 index 0000000..7d8444f --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/BATF3_MA0835.1.bed @@ -0,0 +1,118 @@ +chr1 778685 778698 BATF3_MA0835.1 3.456951253422305 + +chr1 778685 778698 BATF3_MA0835.1 3.033940147667209 - +chr1 778710 778723 BATF3_MA0835.1 4.373240485299085 + +chr1 778710 778723 BATF3_MA0835.1 3.408632886882708 - +chr1 1033066 1033079 BATF3_MA0835.1 1.541253329012960 + +chr1 1033066 1033079 BATF3_MA0835.1 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BATF3_MA0835.1 -1.361276083169290 - +chr1 38991235 38991248 BATF3_MA0835.1 2.145763790119766 + +chr1 38991235 38991248 BATF3_MA0835.1 1.604167297458485 - +chr1 40373741 40373754 BATF3_MA0835.1 0.764547881007369 + +chr1 40385704 40385717 BATF3_MA0835.1 -1.173234821899880 + +chr1 40386008 40386021 BATF3_MA0835.1 5.385774284809774 + +chr1 40531525 40531538 BATF3_MA0835.1 -0.130832661995765 + +chr1 40531525 40531538 BATF3_MA0835.1 -0.703934930633176 - +chr1 40692202 40692215 BATF3_MA0835.1 -0.076604284594471 + +chr1 40709215 40709228 BATF3_MA0835.1 7.809790114785128 + +chr1 41752155 41752168 BATF3_MA0835.1 7.120851744515137 + +chr1 42456681 42456694 BATF3_MA0835.1 0.159054075192474 - +chr1 45544009 45544022 BATF3_MA0835.1 -0.804538475437572 - +chr1 46719178 46719191 BATF3_MA0835.1 2.448089060256105 + +chr1 46719178 46719191 BATF3_MA0835.1 2.531228477579446 - +chr1 47436859 47436872 BATF3_MA0835.1 -1.343826203187330 + +chr1 48472368 48472381 BATF3_MA0835.1 -1.395432736824977 + +chr1 51235652 51235665 BATF3_MA0835.1 -1.066909089848157 + +chr1 51617070 51617083 BATF3_MA0835.1 -1.454275691886102 + +chr1 51617070 51617083 BATF3_MA0835.1 -1.548331817528378 - +chr1 53238540 53238553 BATF3_MA0835.1 -0.458409154284228 + +chr1 53238540 53238553 BATF3_MA0835.1 -0.552465279926504 - +chr1 54376475 54376488 BATF3_MA0835.1 -1.431092938305706 - +chr1 56526720 56526733 BATF3_MA0835.1 5.131765925716867 - +chr1 57168183 57168196 BATF3_MA0835.1 0.692614676724958 - +chr1 58392234 58392247 BATF3_MA0835.1 0.056363207524095 + +chr1 58784104 58784117 BATF3_MA0835.1 2.536506406830083 - +chr1 58784361 58784374 BATF3_MA0835.1 1.223094683587019 + +chr1 58784361 58784374 BATF3_MA0835.1 -0.353315226409177 - +chr1 61724882 61724895 BATF3_MA0835.1 0.402850797356197 + +chr1 61725502 61725515 BATF3_MA0835.1 5.041014234128220 + +chr1 63892872 63892885 BATF3_MA0835.1 0.289153772699810 - +chr1 64172764 64172777 BATF3_MA0835.1 2.701347620076954 - +chr1 65393743 65393756 BATF3_MA0835.1 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BATF3_MA0835.1 -0.270772149427817 - +chr1 86016362 86016375 BATF3_MA0835.1 -1.343386313818323 + +chr1 87045942 87045955 BATF3_MA0835.1 1.711932192800919 - +chr1 87046061 87046074 BATF3_MA0835.1 1.699043855941699 + +chr1 87813207 87813220 BATF3_MA0835.1 -0.722422868279022 - +chr1 88891275 88891288 BATF3_MA0835.1 3.029738126604128 - +chr1 89064833 89064846 BATF3_MA0835.1 0.804299445352551 - +chr1 89693387 89693400 BATF3_MA0835.1 -1.193875599181289 - +chr1 89693566 89693579 BATF3_MA0835.1 0.633904341504571 + +chr1 94963096 94963109 BATF3_MA0835.1 2.966785201095444 + +chr1 99759278 99759291 BATF3_MA0835.1 -0.513676117338431 - +chr1 100046985 100046998 BATF3_MA0835.1 0.587057999060707 - diff --git a/demo/known_tfbs_chr1_hg38/BATF_JUN_MA0462.1.bed b/demo/known_tfbs_chr1_hg38/BATF_JUN_MA0462.1.bed new file mode 100644 index 0000000..8bd7800 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/BATF_JUN_MA0462.1.bed @@ -0,0 +1,558 @@ +chr1 790457 790467 BATF_JUN_MA0462.1 9.323285666259462 + +chr1 790461 790471 BATF_JUN_MA0462.1 7.339785398218734 - +chr1 3677037 3677047 BATF_JUN_MA0462.1 8.595861685259242 - +chr1 3677197 3677207 BATF_JUN_MA0462.1 8.975128242416838 + +chr1 4267689 4267699 BATF_JUN_MA0462.1 7.451578636700976 + +chr1 6603043 6603053 BATF_JUN_MA0462.1 8.205545112132354 + +chr1 6784566 6784576 BATF_JUN_MA0462.1 8.091921498469450 - +chr1 8097574 8097584 BATF_JUN_MA0462.1 10.639475489651966 + +chr1 8097578 8097588 BATF_JUN_MA0462.1 9.931423463249081 - +chr1 8097735 8097745 BATF_JUN_MA0462.1 8.207748817856913 + +chr1 8097739 8097749 BATF_JUN_MA0462.1 10.940681973555041 - +chr1 8167448 8167458 BATF_JUN_MA0462.1 10.940681973555041 + +chr1 8167452 8167462 BATF_JUN_MA0462.1 9.424292964780960 - +chr1 8182576 8182586 BATF_JUN_MA0462.1 7.335877561620109 - +chr1 8283382 8283392 BATF_JUN_MA0462.1 9.060277989269240 + +chr1 8525678 8525688 BATF_JUN_MA0462.1 7.534120377981180 - +chr1 8878796 8878806 BATF_JUN_MA0462.1 8.552643088206697 - +chr1 11805902 11805912 BATF_JUN_MA0462.1 8.975128242416838 - +chr1 12040604 12040614 BATF_JUN_MA0462.1 8.033059801230234 + +chr1 12052165 12052175 BATF_JUN_MA0462.1 10.964032470752496 + +chr1 12052169 12052179 BATF_JUN_MA0462.1 8.572519445398454 - +chr1 12162008 12162018 BATF_JUN_MA0462.1 8.371668623465185 + +chr1 12162012 12162022 BATF_JUN_MA0462.1 9.195421724948938 - +chr1 12435799 12435809 BATF_JUN_MA0462.1 8.565763805942524 + +chr1 12449673 12449683 BATF_JUN_MA0462.1 7.359228058817564 + +chr1 12449719 12449729 BATF_JUN_MA0462.1 7.481132498340990 + +chr1 15617081 15617091 BATF_JUN_MA0462.1 7.631025052981314 - +chr1 15966130 15966140 BATF_JUN_MA0462.1 8.391683957277545 + +chr1 15966490 15966500 BATF_JUN_MA0462.1 8.833115995459394 + +chr1 16544646 16544656 BATF_JUN_MA0462.1 9.197252100129599 - +chr1 16728633 16728643 BATF_JUN_MA0462.1 9.197252100129599 + +chr1 17141681 17141691 BATF_JUN_MA0462.1 7.757595914854940 + +chr1 17141702 17141712 BATF_JUN_MA0462.1 7.126497419627083 + +chr1 17141706 17141716 BATF_JUN_MA0462.1 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7.836116815895590 + +chr1 31606002 31606012 BATF_JUN_MA0462.1 8.168208420403785 + +chr1 32981315 32981325 BATF_JUN_MA0462.1 9.307104023340456 + +chr1 33903452 33903462 BATF_JUN_MA0462.1 8.030856095505674 + +chr1 34360795 34360805 BATF_JUN_MA0462.1 8.792035297539018 - +chr1 34360813 34360823 BATF_JUN_MA0462.1 8.716240938378075 - +chr1 36149482 36149492 BATF_JUN_MA0462.1 7.797517853930619 + +chr1 36149901 36149911 BATF_JUN_MA0462.1 9.518010444981124 + +chr1 36373960 36373970 BATF_JUN_MA0462.1 8.716240938378075 - +chr1 36386301 36386311 BATF_JUN_MA0462.1 9.926037703182860 - +chr1 37507768 37507778 BATF_JUN_MA0462.1 7.856294619181497 - +chr1 37901661 37901671 BATF_JUN_MA0462.1 8.323771848374674 - +chr1 38028174 38028184 BATF_JUN_MA0462.1 10.639475489651966 - +chr1 38173198 38173208 BATF_JUN_MA0462.1 8.059592352769352 + +chr1 38859896 38859906 BATF_JUN_MA0462.1 7.550691819859403 - +chr1 39666901 39666911 BATF_JUN_MA0462.1 11.651916054299587 + +chr1 39666905 39666915 BATF_JUN_MA0462.1 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216006109 BATF_JUN_MA0462.1 10.431751041292840 + +chr1 216006103 216006113 BATF_JUN_MA0462.1 10.940681973555041 - +chr1 217275421 217275431 BATF_JUN_MA0462.1 7.962687677769217 + +chr1 217275425 217275435 BATF_JUN_MA0462.1 8.760488584664188 - +chr1 217323332 217323342 BATF_JUN_MA0462.1 7.574042317056858 - +chr1 217494946 217494956 BATF_JUN_MA0462.1 8.487782913368573 + diff --git a/demo/known_tfbs_chr1_hg38/BCL6B_MA0731.1.bed b/demo/known_tfbs_chr1_hg38/BCL6B_MA0731.1.bed new file mode 100644 index 0000000..5cca1f0 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/BCL6B_MA0731.1.bed @@ -0,0 +1,227 @@ +chr1 3676774 3676790 BCL6B_MA0731.1 -28.655370081506259 - +chr1 4267640 4267656 BCL6B_MA0731.1 -29.395512020048194 - +chr1 6393967 6393983 BCL6B_MA0731.1 -16.403234708910553 - +chr1 9163184 9163200 BCL6B_MA0731.1 -30.834912716778479 + +chr1 9942776 9942792 BCL6B_MA0731.1 -28.578172929335373 - +chr1 10430613 10430629 BCL6B_MA0731.1 -26.137622237058331 - +chr1 11664720 11664736 BCL6B_MA0731.1 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+ +chr1 161045269 161045285 BCL6B_MA0731.1 -25.658417028957132 + +chr1 161046194 161046210 BCL6B_MA0731.1 -18.905106509319229 - +chr1 161531166 161531182 BCL6B_MA0731.1 -31.134486098517751 - +chr1 162361769 162361785 BCL6B_MA0731.1 -26.534788728754695 + +chr1 162361806 162361822 BCL6B_MA0731.1 -30.916584523080463 - +chr1 162530777 162530793 BCL6B_MA0731.1 -19.605913504304802 + +chr1 162790500 162790516 BCL6B_MA0731.1 -21.144093487142740 - +chr1 163697413 163697429 BCL6B_MA0731.1 -30.123018007402646 - +chr1 165878153 165878169 BCL6B_MA0731.1 -26.215676170080798 - +chr1 166975824 166975840 BCL6B_MA0731.1 -29.641576792019009 + +chr1 167935676 167935692 BCL6B_MA0731.1 -29.320362250643161 + +chr1 169390558 169390574 BCL6B_MA0731.1 -17.998260693964816 - +chr1 169916069 169916085 BCL6B_MA0731.1 -21.792914480572062 + +chr1 170126705 170126721 BCL6B_MA0731.1 -24.050556526732926 + +chr1 170932312 170932328 BCL6B_MA0731.1 -27.880583898687703 + +chr1 173195566 173195582 BCL6B_MA0731.1 -24.568709488414587 - +chr1 174799802 174799818 BCL6B_MA0731.1 -23.330131965806469 + +chr1 174874695 174874711 BCL6B_MA0731.1 -30.835597933360052 - +chr1 174969118 174969134 BCL6B_MA0731.1 -29.240035200947379 - +chr1 175141997 175142013 BCL6B_MA0731.1 -15.262456439892361 - +chr1 175142211 175142227 BCL6B_MA0731.1 -28.266932192177016 + +chr1 175209029 175209045 BCL6B_MA0731.1 -27.549879747258956 - +chr1 175209768 175209784 BCL6B_MA0731.1 -29.240035200947379 - +chr1 178056346 178056362 BCL6B_MA0731.1 -29.084941695943311 + +chr1 178607892 178607908 BCL6B_MA0731.1 -22.063486793703131 - +chr1 178659680 178659696 BCL6B_MA0731.1 -26.607149696536737 - diff --git a/demo/known_tfbs_chr1_hg38/BHLHE22_MA0818.1.bed b/demo/known_tfbs_chr1_hg38/BHLHE22_MA0818.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/BHLHE23_MA0817.1.bed b/demo/known_tfbs_chr1_hg38/BHLHE23_MA0817.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/BHLHE40_MA0464.2.bed b/demo/known_tfbs_chr1_hg38/BHLHE40_MA0464.2.bed new file mode 100644 index 0000000..5c22ee8 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/BHLHE40_MA0464.2.bed @@ -0,0 +1,115 @@ +chr1 1232108 1232117 BHLHE40_MA0464.2 7.748240508836730 + +chr1 1505197 1505206 BHLHE40_MA0464.2 7.781515297441976 - +chr1 1505206 1505215 BHLHE40_MA0464.2 7.835131780463827 + +chr1 1505206 1505215 BHLHE40_MA0464.2 8.810604967406041 - +chr1 2555743 2555752 BHLHE40_MA0464.2 7.781515297441976 - +chr1 2653458 2653467 BHLHE40_MA0464.2 9.385949089458231 + +chr1 2653458 2653467 BHLHE40_MA0464.2 8.888883833443684 - +chr1 2750414 2750423 BHLHE40_MA0464.2 10.123367724279028 + +chr1 2750414 2750423 BHLHE40_MA0464.2 8.780207523339232 - +chr1 6199514 6199523 BHLHE40_MA0464.2 7.668842135469163 + +chr1 6861563 6861572 BHLHE40_MA0464.2 7.993787959217680 - +chr1 8878325 8878334 BHLHE40_MA0464.2 7.311773126743553 + +chr1 8878325 8878334 BHLHE40_MA0464.2 8.287246313685767 - +chr1 8878371 8878380 BHLHE40_MA0464.2 8.829262364802938 + +chr1 8878371 8878380 BHLHE40_MA0464.2 9.219675218001148 - +chr1 8878451 8878460 BHLHE40_MA0464.2 9.273275927485416 + +chr1 8878451 8878460 BHLHE40_MA0464.2 8.670277984322599 - +chr1 9539437 9539446 BHLHE40_MA0464.2 7.748240508836730 + +chr1 10032948 10032957 BHLHE40_MA0464.2 9.517679440489800 + +chr1 10032948 10032957 BHLHE40_MA0464.2 10.576359475379654 - +chr1 10472576 10472585 BHLHE40_MA0464.2 7.428061656528472 + +chr1 10472625 10472634 BHLHE40_MA0464.2 8.052860411706222 - +chr1 11736045 11736054 BHLHE40_MA0464.2 10.308698784794865 + +chr1 11736045 11736054 BHLHE40_MA0464.2 10.308698784794863 - +chr1 11806169 11806178 BHLHE40_MA0464.2 7.748240508836730 + +chr1 11806192 11806201 BHLHE40_MA0464.2 8.892880685312047 + +chr1 11806192 11806201 BHLHE40_MA0464.2 10.341973573400111 - +chr1 12078676 12078685 BHLHE40_MA0464.2 10.245080464285756 + +chr1 12078676 12078685 BHLHE40_MA0464.2 9.186400429395901 - +chr1 15526817 15526826 BHLHE40_MA0464.2 10.308698784794865 + +chr1 15526817 15526826 BHLHE40_MA0464.2 10.308698784794863 - +chr1 15603647 15603656 BHLHE40_MA0464.2 7.390790016054861 - +chr1 15603654 15603663 BHLHE40_MA0464.2 8.892880685312047 + +chr1 15603654 15603663 BHLHE40_MA0464.2 10.341973573400111 - +chr1 15603698 15603707 BHLHE40_MA0464.2 9.299073591368716 + +chr1 15603698 15603707 BHLHE40_MA0464.2 10.463686313406841 - +chr1 18902945 18902954 BHLHE40_MA0464.2 7.906912461128162 + +chr1 18902945 18902954 BHLHE40_MA0464.2 7.884186621927533 - +chr1 20661375 20661384 BHLHE40_MA0464.2 8.937938674907389 + +chr1 20661375 20661384 BHLHE40_MA0464.2 8.482256583180352 - +chr1 22451802 22451811 BHLHE40_MA0464.2 10.357753626258571 + +chr1 22451802 22451811 BHLHE40_MA0464.2 9.405006278516986 - +chr1 25906462 25906471 BHLHE40_MA0464.2 10.090092935673781 + +chr1 25906462 25906471 BHLHE40_MA0464.2 10.196025622822050 - +chr1 25906506 25906515 BHLHE40_MA0464.2 9.977419773700966 + +chr1 25906506 25906515 BHLHE40_MA0464.2 9.977419773700966 - +chr1 26432152 26432161 BHLHE40_MA0464.2 8.892880685312047 + +chr1 26432152 26432161 BHLHE40_MA0464.2 10.341973573400111 - +chr1 26472398 26472407 BHLHE40_MA0464.2 7.781515297441977 + +chr1 26500569 26500578 BHLHE40_MA0464.2 10.341973573400113 + +chr1 26500569 26500578 BHLHE40_MA0464.2 8.892880685312045 - +chr1 26500978 26500987 BHLHE40_MA0464.2 10.010694562306213 + +chr1 26500978 26500987 BHLHE40_MA0464.2 8.561601674218148 - +chr1 27322387 27322396 BHLHE40_MA0464.2 8.926155473917294 + +chr1 27322387 27322396 BHLHE40_MA0464.2 8.926155473917293 - +chr1 27726316 27726325 BHLHE40_MA0464.2 8.561601674218148 + +chr1 27726316 27726325 BHLHE40_MA0464.2 10.010694562306213 - +chr1 31788410 31788419 BHLHE40_MA0464.2 7.390790016054861 + +chr1 32351605 32351614 BHLHE40_MA0464.2 8.926155473917294 + +chr1 32351605 32351614 BHLHE40_MA0464.2 8.926155473917293 - +chr1 32650969 32650978 BHLHE40_MA0464.2 10.341973573400113 + +chr1 32650969 32650978 BHLHE40_MA0464.2 8.892880685312045 - 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42658075 BHLHE40_MA0464.2 7.940187249733409 - +chr1 43974901 43974910 BHLHE40_MA0464.2 8.015901199421521 - +chr1 44631957 44631966 BHLHE40_MA0464.2 9.785340131074591 + +chr1 44631957 44631966 BHLHE40_MA0464.2 9.785340131074589 - +chr1 52366190 52366199 BHLHE40_MA0464.2 9.078265657990833 + +chr1 52698349 52698358 BHLHE40_MA0464.2 8.892880685312047 + +chr1 52698349 52698358 BHLHE40_MA0464.2 10.341973573400111 - +chr1 52703418 52703427 BHLHE40_MA0464.2 7.781515297441977 + +chr1 54199995 54200004 BHLHE40_MA0464.2 8.926155473917294 + +chr1 54199995 54200004 BHLHE40_MA0464.2 8.926155473917293 - +chr1 55288062 55288071 BHLHE40_MA0464.2 8.561601674218148 + +chr1 55288062 55288071 BHLHE40_MA0464.2 10.010694562306213 - +chr1 59432561 59432570 BHLHE40_MA0464.2 8.052860411706224 + +chr1 64883120 64883129 BHLHE40_MA0464.2 8.888883833443684 + +chr1 64883120 64883129 BHLHE40_MA0464.2 9.385949089458228 - +chr1 68497146 68497155 BHLHE40_MA0464.2 10.308698784794865 + +chr1 68497146 68497155 BHLHE40_MA0464.2 10.308698784794863 - +chr1 70517626 70517635 BHLHE40_MA0464.2 7.771123868612468 + +chr1 71080577 71080586 BHLHE40_MA0464.2 7.781515297441976 - +chr1 75797295 75797304 BHLHE40_MA0464.2 7.668842135469163 - +chr1 76074625 76074634 BHLHE40_MA0464.2 10.090092935673781 + +chr1 76074625 76074634 BHLHE40_MA0464.2 10.196025622822050 - +chr1 77682976 77682985 BHLHE40_MA0464.2 7.781515297441976 - +chr1 77683053 77683062 BHLHE40_MA0464.2 7.315388494555657 + +chr1 86502497 86502506 BHLHE40_MA0464.2 8.078807300079864 + +chr1 86502497 86502506 BHLHE40_MA0464.2 8.184739987228134 - +chr1 88684190 88684199 BHLHE40_MA0464.2 8.843879756011289 - +chr1 88891673 88891682 BHLHE40_MA0464.2 9.405006278516986 + +chr1 88891673 88891682 BHLHE40_MA0464.2 10.357753626258567 - +chr1 89524337 89524346 BHLHE40_MA0464.2 7.428061656528472 + +chr1 92484818 92484827 BHLHE40_MA0464.2 7.428061656528472 + +chr1 92975829 92975838 BHLHE40_MA0464.2 7.748240508836728 - +chr1 94411360 94411369 BHLHE40_MA0464.2 9.050611836880204 + +chr1 94411360 94411369 BHLHE40_MA0464.2 8.700862432301436 - +chr1 100076090 100076099 BHLHE40_MA0464.2 9.550954229095048 + +chr1 100076090 100076099 BHLHE40_MA0464.2 9.160541375896836 - +chr1 100894985 100894994 BHLHE40_MA0464.2 9.604554938579316 + diff --git a/demo/known_tfbs_chr1_hg38/BHLHE41_MA0636.1.bed b/demo/known_tfbs_chr1_hg38/BHLHE41_MA0636.1.bed new file mode 100644 index 0000000..992d2cb --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/BHLHE41_MA0636.1.bed @@ -0,0 +1,114 @@ +chr1 1157857 1157866 BHLHE41_MA0636.1 5.089240754371716 - +chr1 1232108 1232117 BHLHE41_MA0636.1 6.590807611777923 + +chr1 1232108 1232117 BHLHE41_MA0636.1 5.706605945695955 - +chr1 1399387 1399396 BHLHE41_MA0636.1 5.278470244112150 + +chr1 1399387 1399396 BHLHE41_MA0636.1 5.392082154674220 - +chr1 1505206 1505215 BHLHE41_MA0636.1 6.869755036754456 + +chr1 1505206 1505215 BHLHE41_MA0636.1 8.328077959358898 - +chr1 2653458 2653467 BHLHE41_MA0636.1 6.705486326924826 + +chr1 2653458 2653467 BHLHE41_MA0636.1 6.528385538462851 - +chr1 2750414 2750423 BHLHE41_MA0636.1 9.580677127815825 + +chr1 2750414 2750423 BHLHE41_MA0636.1 9.122000469385252 - +chr1 8878325 8878334 BHLHE41_MA0636.1 5.170516354340225 + +chr1 8878325 8878334 BHLHE41_MA0636.1 6.628839276944668 - +chr1 8878371 8878380 BHLHE41_MA0636.1 7.353293294936481 + +chr1 8878371 8878380 BHLHE41_MA0636.1 7.025121244740171 - +chr1 8878451 8878460 BHLHE41_MA0636.1 5.193695829566393 + +chr1 8878451 8878460 BHLHE41_MA0636.1 5.415151660711091 - +chr1 9539437 9539446 BHLHE41_MA0636.1 6.590807611777923 + +chr1 9539437 9539446 BHLHE41_MA0636.1 5.706605945695955 - +chr1 10032948 10032957 BHLHE41_MA0636.1 11.323285163851924 + +chr1 10032948 10032957 BHLHE41_MA0636.1 11.711577252872132 - +chr1 10033322 10033331 BHLHE41_MA0636.1 5.561981046793816 + +chr1 10472625 10472634 BHLHE41_MA0636.1 5.611173029640118 - +chr1 11736045 11736054 BHLHE41_MA0636.1 12.367050549569145 + +chr1 11736045 11736054 BHLHE41_MA0636.1 12.367050549569145 - +chr1 11806099 11806108 BHLHE41_MA0636.1 5.398830298979048 + +chr1 11806169 11806178 BHLHE41_MA0636.1 6.590807611777923 + +chr1 11806169 11806178 BHLHE41_MA0636.1 5.706605945695955 - +chr1 11806192 11806201 BHLHE41_MA0636.1 10.633790966743684 + +chr1 11806192 11806201 BHLHE41_MA0636.1 10.693911005567584 - +chr1 12078676 12078685 BHLHE41_MA0636.1 9.086552877761942 + +chr1 12078676 12078685 BHLHE41_MA0636.1 8.698260788741733 - +chr1 15526817 15526826 BHLHE41_MA0636.1 12.367050549569145 + +chr1 15526817 15526826 BHLHE41_MA0636.1 12.367050549569145 - +chr1 15603654 15603663 BHLHE41_MA0636.1 10.633790966743684 + +chr1 15603654 15603663 BHLHE41_MA0636.1 10.693911005567584 - +chr1 15603698 15603707 BHLHE41_MA0636.1 10.210051286100166 + +chr1 15603698 15603707 BHLHE41_MA0636.1 10.199786755513703 - +chr1 15835033 15835042 BHLHE41_MA0636.1 5.547001335426465 + +chr1 15835033 15835042 BHLHE41_MA0636.1 5.461550646708760 - +chr1 18902945 18902954 BHLHE41_MA0636.1 5.772522076283249 + +chr1 18902945 18902954 BHLHE41_MA0636.1 5.101047862305684 - +chr1 22451802 22451811 BHLHE41_MA0636.1 10.598343375120375 + +chr1 22451802 22451811 BHLHE41_MA0636.1 9.811494666493493 - +chr1 24642999 24643008 BHLHE41_MA0636.1 5.677026863718821 - +chr1 25906462 25906471 BHLHE41_MA0636.1 11.253816671817386 + +chr1 25906462 25906471 BHLHE41_MA0636.1 10.855260052210713 - +chr1 25906506 25906515 BHLHE41_MA0636.1 9.742026174458953 + +chr1 25906506 25906515 BHLHE41_MA0636.1 9.742026174458953 - +chr1 26432152 26432161 BHLHE41_MA0636.1 10.633790966743684 + +chr1 26432152 26432161 BHLHE41_MA0636.1 10.693911005567584 - +chr1 26500569 26500578 BHLHE41_MA0636.1 10.693911005567584 + +chr1 26500569 26500578 BHLHE41_MA0636.1 10.633790966743684 - +chr1 26500978 26500987 BHLHE41_MA0636.1 8.068886630457392 + +chr1 26500978 26500987 BHLHE41_MA0636.1 8.008766591633492 - +chr1 27322387 27322396 BHLHE41_MA0636.1 8.960651422742123 + +chr1 27322387 27322396 BHLHE41_MA0636.1 8.960651422742123 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38859886 BHLHE41_MA0636.1 11.253816671817386 - +chr1 39799370 39799379 BHLHE41_MA0636.1 9.811494666493493 + +chr1 39799370 39799379 BHLHE41_MA0636.1 10.598343375120375 - +chr1 39817451 39817460 BHLHE41_MA0636.1 10.598343375120375 + +chr1 39817451 39817460 BHLHE41_MA0636.1 9.811494666493493 - +chr1 40097248 40097257 BHLHE41_MA0636.1 5.398830298979047 - +chr1 40161357 40161366 BHLHE41_MA0636.1 5.706605945695955 + +chr1 40161357 40161366 BHLHE41_MA0636.1 6.590807611777923 - +chr1 42456060 42456069 BHLHE41_MA0636.1 12.367050549569145 + +chr1 42456060 42456069 BHLHE41_MA0636.1 12.367050549569145 - +chr1 43974901 43974910 BHLHE41_MA0636.1 5.935334315080912 - +chr1 44631957 44631966 BHLHE41_MA0636.1 10.667811867154914 + +chr1 44631957 44631966 BHLHE41_MA0636.1 10.667811867154914 - +chr1 52366190 52366199 BHLHE41_MA0636.1 7.672604662661887 + +chr1 52366190 52366199 BHLHE41_MA0636.1 5.825989651037236 - +chr1 52698121 52698130 BHLHE41_MA0636.1 5.547042226060704 + +chr1 52698349 52698358 BHLHE41_MA0636.1 10.633790966743684 + +chr1 52698349 52698358 BHLHE41_MA0636.1 10.693911005567584 - +chr1 54199995 54200004 BHLHE41_MA0636.1 8.960651422742123 + +chr1 54199995 54200004 BHLHE41_MA0636.1 8.960651422742123 - +chr1 55288062 55288071 BHLHE41_MA0636.1 8.008766591633492 + +chr1 55288062 55288071 BHLHE41_MA0636.1 8.068886630457392 - +chr1 59432561 59432570 BHLHE41_MA0636.1 5.611173029640118 + +chr1 64224133 64224142 BHLHE41_MA0636.1 5.561981046793816 + +chr1 64883120 64883129 BHLHE41_MA0636.1 6.528385538462851 + +chr1 64883120 64883129 BHLHE41_MA0636.1 6.705486326924826 - +chr1 68497146 68497155 BHLHE41_MA0636.1 12.367050549569145 + +chr1 68497146 68497155 BHLHE41_MA0636.1 12.367050549569145 - +chr1 76074625 76074634 BHLHE41_MA0636.1 11.253816671817386 + +chr1 76074625 76074634 BHLHE41_MA0636.1 10.855260052210713 - +chr1 88684190 88684199 BHLHE41_MA0636.1 5.136495453928996 + +chr1 88684190 88684199 BHLHE41_MA0636.1 6.654938415357337 - +chr1 88891673 88891682 BHLHE41_MA0636.1 9.811494666493493 + +chr1 88891673 88891682 BHLHE41_MA0636.1 10.598343375120375 - +chr1 91885522 91885531 BHLHE41_MA0636.1 5.677026863718821 - +chr1 92975829 92975838 BHLHE41_MA0636.1 5.706605945695955 + +chr1 92975829 92975838 BHLHE41_MA0636.1 6.590807611777923 - +chr1 94411360 94411369 BHLHE41_MA0636.1 6.271468861372512 + +chr1 94411360 94411369 BHLHE41_MA0636.1 5.263164321600933 - +chr1 100076090 100076099 BHLHE41_MA0636.1 9.650145619850363 + +chr1 100076090 100076099 BHLHE41_MA0636.1 9.978317670046671 - diff --git a/demo/known_tfbs_chr1_hg38/BSX_MA0876.1.bed b/demo/known_tfbs_chr1_hg38/BSX_MA0876.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/Bach1_Mafk_MA0591.1.bed b/demo/known_tfbs_chr1_hg38/Bach1_Mafk_MA0591.1.bed new file mode 100644 index 0000000..9618370 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/Bach1_Mafk_MA0591.1.bed @@ -0,0 +1,327 @@ +chr1 1511642 1511656 Bach1_Mafk_MA0591.1 4.404748455774587 - +chr1 1511702 1511716 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7.278393100730331 + +chr1 53889945 53889958 Bcl6_MA0463.1 7.306512918684453 + +chr1 54542238 54542251 Bcl6_MA0463.1 10.307234527300976 - +chr1 54715956 54715969 Bcl6_MA0463.1 9.937487875068616 + +chr1 54764740 54764753 Bcl6_MA0463.1 12.629404746892039 - +chr1 55338071 55338084 Bcl6_MA0463.1 8.169390805706513 - +chr1 56516962 56516975 Bcl6_MA0463.1 7.366728679524361 + +chr1 57167998 57168011 Bcl6_MA0463.1 7.049064224916262 + +chr1 58573760 58573773 Bcl6_MA0463.1 7.006913499369986 - +chr1 58699669 58699682 Bcl6_MA0463.1 7.267418727862363 + +chr1 59013715 59013728 Bcl6_MA0463.1 7.079578254832031 - +chr1 59697021 59697034 Bcl6_MA0463.1 10.513335343206151 - +chr1 59759507 59759520 Bcl6_MA0463.1 8.111261838344969 - +chr1 60978875 60978888 Bcl6_MA0463.1 9.818341326250810 + +chr1 61332832 61332845 Bcl6_MA0463.1 10.786034482408713 - +chr1 63523456 63523469 Bcl6_MA0463.1 6.948137965154901 + +chr1 64882841 64882854 Bcl6_MA0463.1 7.098728698321472 - +chr1 64987559 64987572 Bcl6_MA0463.1 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10.530793748209655 - +chr1 74197728 74197741 Bcl6_MA0463.1 12.016097156810581 + +chr1 74811540 74811553 Bcl6_MA0463.1 8.378691367111701 - +chr1 74812130 74812143 Bcl6_MA0463.1 7.275531886967309 + +chr1 75786569 75786582 Bcl6_MA0463.1 8.694944797199621 + +chr1 75908878 75908891 Bcl6_MA0463.1 8.178513931636683 + +chr1 75991656 75991669 Bcl6_MA0463.1 8.526299909698597 + +chr1 75991735 75991748 Bcl6_MA0463.1 7.637118464931482 - +chr1 76191089 76191102 Bcl6_MA0463.1 9.761263265060743 - +chr1 77413455 77413468 Bcl6_MA0463.1 7.971382185943819 + +chr1 77672216 77672229 Bcl6_MA0463.1 7.379325364803107 - +chr1 77926865 77926878 Bcl6_MA0463.1 8.235892149970764 - +chr1 77927873 77927886 Bcl6_MA0463.1 7.887438069121658 - +chr1 78061110 78061123 Bcl6_MA0463.1 8.926336588063283 - +chr1 78061132 78061145 Bcl6_MA0463.1 9.315437462586775 + +chr1 78143092 78143105 Bcl6_MA0463.1 7.444882481122097 + +chr1 78281791 78281804 Bcl6_MA0463.1 10.326276331479342 - +chr1 78371226 78371239 Bcl6_MA0463.1 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192530857 CDX1_MA0878.1 8.323040493501633 + diff --git a/demo/known_tfbs_chr1_hg38/CDX2_MA0465.1.bed b/demo/known_tfbs_chr1_hg38/CDX2_MA0465.1.bed new file mode 100644 index 0000000..b37b4ea --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/CDX2_MA0465.1.bed @@ -0,0 +1,235 @@ +chr1 2546366 2546376 CDX2_MA0465.1 7.315065522733444 + +chr1 6822778 6822788 CDX2_MA0465.1 9.108524568545359 - +chr1 8097568 8097578 CDX2_MA0465.1 7.463284707869531 + +chr1 8283107 8283117 CDX2_MA0465.1 9.246847461329995 - +chr1 9069658 9069668 CDX2_MA0465.1 7.577841634653520 - +chr1 9942702 9942712 CDX2_MA0465.1 8.305424962402693 + +chr1 12052185 12052195 CDX2_MA0465.1 8.087128025822127 - +chr1 12620206 12620216 CDX2_MA0465.1 10.908188162398318 - +chr1 15617027 15617037 CDX2_MA0465.1 9.539765515527186 - +chr1 16544776 16544786 CDX2_MA0465.1 8.236650201832838 - +chr1 16905493 16905503 CDX2_MA0465.1 10.456587623275666 - +chr1 17141690 17141700 CDX2_MA0465.1 8.764578058659259 + +chr1 18902685 18902695 CDX2_MA0465.1 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mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/CREB3_MA0638.1.bed b/demo/known_tfbs_chr1_hg38/CREB3_MA0638.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/CTCFL_MA1102.1.bed b/demo/known_tfbs_chr1_hg38/CTCFL_MA1102.1.bed new file mode 100644 index 0000000..a0d933c --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/CTCFL_MA1102.1.bed @@ -0,0 +1,1859 @@ +chr1 181743 181756 CTCFL_MA1102.1 13.710787140211108 - +chr1 778701 778714 CTCFL_MA1102.1 6.875096226972196 - +chr1 779184 779197 CTCFL_MA1102.1 8.186299126797214 - +chr1 1013437 1013450 CTCFL_MA1102.1 9.293076162490976 - +chr1 1019445 1019458 CTCFL_MA1102.1 10.202081158510582 + +chr1 1019508 1019521 CTCFL_MA1102.1 8.556241775300752 - +chr1 1019837 1019850 CTCFL_MA1102.1 10.181930794936871 - +chr1 1019954 1019967 CTCFL_MA1102.1 7.781429127728015 + +chr1 1033402 1033415 CTCFL_MA1102.1 9.971860885699247 - +chr1 1116113 1116126 CTCFL_MA1102.1 9.951057618477144 - +chr1 1157999 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CTCFL_MA1102.1 7.272284980778268 + +chr1 183024014 183024027 CTCFL_MA1102.1 9.177429706825697 + +chr1 183070989 183071002 CTCFL_MA1102.1 10.374713252572343 - +chr1 183472145 183472158 CTCFL_MA1102.1 9.330326125110664 - +chr1 183636132 183636145 CTCFL_MA1102.1 7.269079440168672 + +chr1 184037339 184037352 CTCFL_MA1102.1 8.919613528271837 + +chr1 184164330 184164343 CTCFL_MA1102.1 8.175152476902099 + +chr1 184386744 184386757 CTCFL_MA1102.1 8.409325696848747 + +chr1 184387166 184387179 CTCFL_MA1102.1 7.642797543134096 - +chr1 184649838 184649851 CTCFL_MA1102.1 7.514839499457353 - +chr1 184754714 184754727 CTCFL_MA1102.1 9.425971510769518 + +chr1 184755078 184755091 CTCFL_MA1102.1 9.255115420033734 - +chr1 184974011 184974024 CTCFL_MA1102.1 6.883408988415576 + +chr1 184974031 184974044 CTCFL_MA1102.1 6.960052822220950 + +chr1 184974218 184974231 CTCFL_MA1102.1 8.016815036606314 - +chr1 184974511 184974524 CTCFL_MA1102.1 6.996000597278739 - +chr1 185045507 185045520 CTCFL_MA1102.1 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file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/CUX2_MA0755.1.bed b/demo/known_tfbs_chr1_hg38/CUX2_MA0755.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/Creb3l2_MA0608.1.bed b/demo/known_tfbs_chr1_hg38/Creb3l2_MA0608.1.bed new file mode 100644 index 0000000..46f9eb7 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/Creb3l2_MA0608.1.bed @@ -0,0 +1,115 @@ +chr1 1232108 1232116 Creb3l2_MA0608.1 10.017202603196360 + +chr1 1232109 1232117 Creb3l2_MA0608.1 8.420544575628414 - +chr1 1505088 1505096 Creb3l2_MA0608.1 7.827332060507702 - +chr1 1505197 1505205 Creb3l2_MA0608.1 8.420544575628412 + +chr1 1505206 1505214 Creb3l2_MA0608.1 9.109683684991625 + +chr1 1505207 1505215 Creb3l2_MA0608.1 9.105723488126497 - +chr1 1778780 1778788 Creb3l2_MA0608.1 8.919255294582067 + +chr1 1909377 1909385 Creb3l2_MA0608.1 10.017202603196360 + +chr1 2195351 2195359 Creb3l2_MA0608.1 10.017202603196360 + +chr1 2412579 2412587 Creb3l2_MA0608.1 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8.230116185218854 + +chr1 32335994 32336002 Creb3l2_MA0608.1 8.083842703005375 - +chr1 32650970 32650978 Creb3l2_MA0608.1 8.420544575628414 - +chr1 33431140 33431148 Creb3l2_MA0608.1 8.420544575628412 + +chr1 33431141 33431149 Creb3l2_MA0608.1 10.017202603196363 - +chr1 33903041 33903049 Creb3l2_MA0608.1 8.230116185218854 - +chr1 34859933 34859941 Creb3l2_MA0608.1 10.706341712559572 + +chr1 35031756 35031764 Creb3l2_MA0608.1 8.420544575628412 + +chr1 36224246 36224254 Creb3l2_MA0608.1 8.420544575628414 - +chr1 37554362 37554370 Creb3l2_MA0608.1 9.109683684991627 - +chr1 38012478 38012486 Creb3l2_MA0608.1 10.706341712559572 + +chr1 38047076 38047084 Creb3l2_MA0608.1 10.017202603196360 + +chr1 39576465 39576473 Creb3l2_MA0608.1 9.105723488126497 + +chr1 39960566 39960574 Creb3l2_MA0608.1 8.230116185218854 + +chr1 39960567 39960575 Creb3l2_MA0608.1 8.083842703005375 - +chr1 40161357 40161365 Creb3l2_MA0608.1 8.420544575628412 + +chr1 40161358 40161366 Creb3l2_MA0608.1 10.017202603196363 - 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52056273 Creb3l2_MA0608.1 8.925279369121998 - +chr1 52366191 52366199 Creb3l2_MA0608.1 9.109683684991627 - +chr1 52637060 52637068 Creb3l2_MA0608.1 8.230116185218854 - +chr1 52698121 52698129 Creb3l2_MA0608.1 10.017202603196360 + +chr1 52698349 52698357 Creb3l2_MA0608.1 8.420544575628412 + +chr1 52703419 52703427 Creb3l2_MA0608.1 8.420544575628414 - +chr1 54406646 54406654 Creb3l2_MA0608.1 8.083842703005374 + +chr1 55277554 55277562 Creb3l2_MA0608.1 9.614418478485208 + +chr1 58903777 58903785 Creb3l2_MA0608.1 8.230116185218854 + +chr1 68181423 68181431 Creb3l2_MA0608.1 9.105723488126497 + +chr1 68497146 68497154 Creb3l2_MA0608.1 8.420544575628412 + +chr1 68497147 68497155 Creb3l2_MA0608.1 8.420544575628414 - +chr1 70410941 70410949 Creb3l2_MA0608.1 8.919255294582067 + +chr1 70517627 70517635 Creb3l2_MA0608.1 8.017760450917262 - +chr1 71080577 71080585 Creb3l2_MA0608.1 8.420544575628412 + +chr1 75233106 75233114 Creb3l2_MA0608.1 8.925279369121995 + +chr1 75233398 75233406 Creb3l2_MA0608.1 9.614418478485208 + +chr1 75233399 75233407 Creb3l2_MA0608.1 8.013800254052132 - +chr1 77682948 77682956 Creb3l2_MA0608.1 8.420544575628412 + +chr1 77682949 77682957 Creb3l2_MA0608.1 8.925279369121998 - +chr1 77682976 77682984 Creb3l2_MA0608.1 8.420544575628412 + +chr1 77683237 77683245 Creb3l2_MA0608.1 9.105723488126497 - +chr1 85200628 85200636 Creb3l2_MA0608.1 8.925279369121995 + +chr1 85200629 85200637 Creb3l2_MA0608.1 10.017202603196363 - diff --git a/demo/known_tfbs_chr1_hg38/Creb5_MA0840.1.bed b/demo/known_tfbs_chr1_hg38/Creb5_MA0840.1.bed new file mode 100644 index 0000000..55fb3e3 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/Creb5_MA0840.1.bed @@ -0,0 +1,118 @@ +chr1 778686 778697 Creb5_MA0840.1 8.625291035454037 + +chr1 778686 778697 Creb5_MA0840.1 9.375785672404575 - +chr1 778711 778722 Creb5_MA0840.1 9.313047333958590 + +chr1 778711 778722 Creb5_MA0840.1 9.313047333958590 - +chr1 1033067 1033078 Creb5_MA0840.1 5.988975264993491 + +chr1 1033067 1033078 Creb5_MA0840.1 9.677221070215149 - +chr1 1349442 1349453 Creb5_MA0840.1 7.196750394408667 + +chr1 1349442 1349453 Creb5_MA0840.1 5.735848752248508 - +chr1 6579998 6580009 Creb5_MA0840.1 6.768993647766735 + +chr1 6579998 6580009 Creb5_MA0840.1 5.052206072730705 - +chr1 7771269 7771280 Creb5_MA0840.1 6.534702568332084 - +chr1 9428955 9428966 Creb5_MA0840.1 7.539233178800299 + +chr1 9428955 9428966 Creb5_MA0840.1 5.478821858651747 - +chr1 9428982 9428993 Creb5_MA0840.1 9.986701029336700 + +chr1 9428982 9428993 Creb5_MA0840.1 12.414028553980696 - +chr1 9539414 9539425 Creb5_MA0840.1 8.688029373900022 + +chr1 9539414 9539425 Creb5_MA0840.1 8.688029373900022 - +chr1 10694407 10694418 Creb5_MA0840.1 5.490924025575442 + +chr1 10694407 10694418 Creb5_MA0840.1 5.461979777955817 - +chr1 11980438 11980449 Creb5_MA0840.1 5.898829979684342 - +chr1 12047668 12047679 Creb5_MA0840.1 10.544520267834201 + +chr1 12047668 12047679 Creb5_MA0840.1 10.160580691520646 - +chr1 14913955 14913966 Creb5_MA0840.1 5.565860142558168 - +chr1 16441138 16441149 Creb5_MA0840.1 5.564496020100516 + +chr1 16441138 16441149 Creb5_MA0840.1 6.796470053058548 - +chr1 16514521 16514532 Creb5_MA0840.1 5.883120291422371 + +chr1 16514521 16514532 Creb5_MA0840.1 5.852827821678123 - +chr1 16904950 16904961 Creb5_MA0840.1 7.224226799700482 + +chr1 16904950 16904961 Creb5_MA0840.1 6.248138699618319 - +chr1 17054027 17054038 Creb5_MA0840.1 6.756941113994476 + +chr1 17054027 17054038 Creb5_MA0840.1 5.750560544168066 - +chr1 17536628 17536639 Creb5_MA0840.1 5.556515884378706 + +chr1 17536628 17536639 Creb5_MA0840.1 6.660657627898551 - +chr1 21783610 21783621 Creb5_MA0840.1 8.559699176650776 + +chr1 21783610 21783621 Creb5_MA0840.1 8.177107822461842 - +chr1 22052662 22052673 Creb5_MA0840.1 5.750560544168066 + +chr1 22052662 22052673 Creb5_MA0840.1 6.756941113994476 - +chr1 23168877 23168888 Creb5_MA0840.1 6.812543988658041 + +chr1 23168877 23168888 Creb5_MA0840.1 9.622462867490972 - +chr1 24965244 24965255 Creb5_MA0840.1 5.487809413482175 - +chr1 26169844 26169855 Creb5_MA0840.1 10.534531283694506 + +chr1 26169844 26169855 Creb5_MA0840.1 12.833805164900820 - +chr1 27660177 27660188 Creb5_MA0840.1 8.337350554692595 + +chr1 27660177 27660188 Creb5_MA0840.1 8.464417119864120 - +chr1 27773023 27773034 Creb5_MA0840.1 10.414457775978631 + +chr1 27773023 27773034 Creb5_MA0840.1 13.097671233498501 - +chr1 31296926 31296937 Creb5_MA0840.1 8.496960838204792 + +chr1 31296926 31296937 Creb5_MA0840.1 8.864864120966395 - +chr1 31644871 31644882 Creb5_MA0840.1 9.194706120849041 + +chr1 31644871 31644882 Creb5_MA0840.1 6.128901309140237 - +chr1 31645226 31645237 Creb5_MA0840.1 8.874204746644551 + +chr1 31645226 31645237 Creb5_MA0840.1 11.558405282430577 - +chr1 32394423 32394434 Creb5_MA0840.1 9.532432864884708 + +chr1 36089045 36089056 Creb5_MA0840.1 6.493075045396795 + +chr1 36089045 36089056 Creb5_MA0840.1 5.870634051883941 - +chr1 38991236 38991247 Creb5_MA0840.1 9.375785672404575 + +chr1 38991236 38991247 Creb5_MA0840.1 8.625291035454037 - +chr1 40386009 40386020 Creb5_MA0840.1 6.530595136042980 + +chr1 40386009 40386020 Creb5_MA0840.1 8.493606426356560 - +chr1 41662400 41662411 Creb5_MA0840.1 6.477001109797300 - +chr1 41752156 41752167 Creb5_MA0840.1 6.029662568744498 + +chr1 41752156 41752167 Creb5_MA0840.1 5.692051755727138 - +chr1 42456682 42456693 Creb5_MA0840.1 8.544626670360548 - +chr1 44800242 44800253 Creb5_MA0840.1 5.345393788208861 - +chr1 45304130 45304141 Creb5_MA0840.1 6.415172538886763 - +chr1 46719179 46719190 Creb5_MA0840.1 9.053047782095970 + +chr1 46719179 46719190 Creb5_MA0840.1 10.059428351922380 - +chr1 48472369 48472380 Creb5_MA0840.1 7.456749946271288 - +chr1 51284813 51284824 Creb5_MA0840.1 5.127141610135052 + +chr1 51284813 51284824 Creb5_MA0840.1 6.961333532744287 - +chr1 51617071 51617082 Creb5_MA0840.1 5.988975264993491 + +chr1 51617071 51617082 Creb5_MA0840.1 9.677221070215149 - +chr1 53238541 53238552 Creb5_MA0840.1 5.988975264993491 + +chr1 53238541 53238552 Creb5_MA0840.1 9.677221070215149 - +chr1 54715939 54715950 Creb5_MA0840.1 6.277933815904356 + +chr1 54764853 54764864 Creb5_MA0840.1 6.728987030668740 + +chr1 57168052 57168063 Creb5_MA0840.1 5.226305583841076 + +chr1 57168184 57168195 Creb5_MA0840.1 8.209020357443347 + +chr1 57168184 57168195 Creb5_MA0840.1 7.953495568425939 - +chr1 58784105 58784116 Creb5_MA0840.1 8.556344764802546 + +chr1 58784105 58784116 Creb5_MA0840.1 5.842838837538427 - +chr1 61725503 61725514 Creb5_MA0840.1 6.730878194255284 + +chr1 63893266 63893277 Creb5_MA0840.1 6.414262771351316 - +chr1 66247783 66247794 Creb5_MA0840.1 6.350841799423719 - +chr1 66276217 66276228 Creb5_MA0840.1 6.288103460977735 + +chr1 66282439 66282450 Creb5_MA0840.1 5.994486160431193 + +chr1 66758493 66758504 Creb5_MA0840.1 9.268566796287026 - +chr1 66954343 66954354 Creb5_MA0840.1 5.418588603384305 + +chr1 66954343 66954354 Creb5_MA0840.1 5.074603714413318 - +chr1 67194473 67194484 Creb5_MA0840.1 6.414490356652638 + 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- +chr1 84573603 84573614 Creb5_MA0840.1 5.754790094173122 + +chr1 84573603 84573614 Creb5_MA0840.1 5.341906270239943 - +chr1 85062201 85062212 Creb5_MA0840.1 9.860877588316399 + +chr1 85062201 85062212 Creb5_MA0840.1 9.732823944878714 - +chr1 88867859 88867870 Creb5_MA0840.1 8.622051390610409 - +chr1 90509421 90509432 Creb5_MA0840.1 5.437905365792057 + +chr1 94963097 94963108 Creb5_MA0840.1 6.076986746686341 - +chr1 96966926 96966937 Creb5_MA0840.1 7.443327811041087 + +chr1 96966926 96966937 Creb5_MA0840.1 5.715757995742230 - +chr1 99759279 99759290 Creb5_MA0840.1 5.820381952976387 + +chr1 99759279 99759290 Creb5_MA0840.1 6.540584120182676 - diff --git a/demo/known_tfbs_chr1_hg38/Crem_MA0609.1.bed b/demo/known_tfbs_chr1_hg38/Crem_MA0609.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/Crx_MA0467.1.bed b/demo/known_tfbs_chr1_hg38/Crx_MA0467.1.bed new file mode 100644 index 0000000..5cd94ec --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/Crx_MA0467.1.bed @@ -0,0 +1,121 @@ +chr1 1615351 1615361 Crx_MA0467.1 8.445579982120776 - +chr1 1693333 1693343 Crx_MA0467.1 8.093102719639447 + +chr1 1891219 1891229 Crx_MA0467.1 7.554607085333096 + +chr1 2577530 2577540 Crx_MA0467.1 7.591232871622330 + +chr1 6205441 6205451 Crx_MA0467.1 8.938795424347536 + +chr1 8097882 8097892 Crx_MA0467.1 9.925898613196626 + +chr1 8817853 8817863 Crx_MA0467.1 8.664642654155749 - +chr1 9129688 9129698 Crx_MA0467.1 8.534264443613891 - +chr1 10210224 10210234 Crx_MA0467.1 7.396004610367934 + +chr1 10940243 10940253 Crx_MA0467.1 7.649828244781522 + +chr1 11273556 11273566 Crx_MA0467.1 9.139311495831659 + +chr1 12079690 12079700 Crx_MA0467.1 9.006980529819206 + +chr1 15836244 15836254 Crx_MA0467.1 7.388449912972953 + +chr1 16353015 16353025 Crx_MA0467.1 8.252117711122381 + +chr1 21294864 21294874 Crx_MA0467.1 7.386244395224947 - +chr1 23484557 23484567 Crx_MA0467.1 7.894103214373485 - +chr1 27365692 27365702 Crx_MA0467.1 8.358686832610736 - +chr1 27830578 27830588 Crx_MA0467.1 7.751456438327323 - +chr1 31788727 31788737 Crx_MA0467.1 7.626619910073696 - +chr1 32520636 32520646 Crx_MA0467.1 9.322721702968071 + +chr1 32992453 32992463 Crx_MA0467.1 8.183932605650707 + +chr1 33472795 33472805 Crx_MA0467.1 7.718648231419304 + +chr1 34530573 34530583 Crx_MA0467.1 8.706283346936788 + +chr1 35192873 35192883 Crx_MA0467.1 8.209844387522349 + +chr1 35769812 35769822 Crx_MA0467.1 8.073734309431499 - +chr1 36149447 36149457 Crx_MA0467.1 8.012442966399218 - +chr1 36464417 36464427 Crx_MA0467.1 7.546081845928070 + +chr1 36464589 36464599 Crx_MA0467.1 8.095308237387457 - +chr1 39408689 39408699 Crx_MA0467.1 7.604819510986945 + +chr1 39598756 39598766 Crx_MA0467.1 9.552919581070338 + +chr1 40040409 40040419 Crx_MA0467.1 8.638650223036603 + +chr1 40257863 40257873 Crx_MA0467.1 7.388449912972953 + +chr1 44684606 44684616 Crx_MA0467.1 9.970019903103505 + +chr1 46302332 46302342 Crx_MA0467.1 7.554607085333096 - +chr1 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Crx_MA0467.1 7.882683354639383 + +chr1 70504722 70504732 Crx_MA0467.1 9.970019903103505 - +chr1 72283080 72283090 Crx_MA0467.1 9.840446522967966 + +chr1 74198499 74198509 Crx_MA0467.1 8.647687973777595 - +chr1 74517671 74517681 Crx_MA0467.1 7.386244395224945 + +chr1 74517719 74517729 Crx_MA0467.1 7.699397763123440 + +chr1 74579483 74579493 Crx_MA0467.1 8.676911219660051 + +chr1 74733561 74733571 Crx_MA0467.1 9.789788535105775 + +chr1 75937367 75937377 Crx_MA0467.1 9.555615550943427 - +chr1 75991623 75991633 Crx_MA0467.1 8.252117711122381 - +chr1 76871526 76871536 Crx_MA0467.1 8.505658408625980 - +chr1 77978685 77978695 Crx_MA0467.1 9.958798693825393 + +chr1 78088257 78088267 Crx_MA0467.1 10.714355872550808 + +chr1 78650259 78650269 Crx_MA0467.1 9.414603985231478 + +chr1 78655992 78656002 Crx_MA0467.1 10.103489629828159 + +chr1 78855429 78855439 Crx_MA0467.1 8.741728823043257 + +chr1 79040456 79040466 Crx_MA0467.1 7.737293740638560 - +chr1 79040533 79040543 Crx_MA0467.1 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125178255 DUX4_MA0468.1 6.777324071518486 - +chr1 125178294 125178304 DUX4_MA0468.1 6.777324071518486 - +chr1 125179323 125179333 DUX4_MA0468.1 6.777324071518486 - +chr1 125179426 125179436 DUX4_MA0468.1 10.110768121192173 - +chr1 125179452 125179462 DUX4_MA0468.1 6.777324071518486 - +chr1 125179526 125179536 DUX4_MA0468.1 6.777324071518486 - +chr1 125179552 125179562 DUX4_MA0468.1 6.777324071518486 - +chr1 125179601 125179611 DUX4_MA0468.1 6.777324071518486 - +chr1 125179627 125179637 DUX4_MA0468.1 7.600170025772626 - +chr1 125179672 125179682 DUX4_MA0468.1 6.777324071518486 - +chr1 125179744 125179754 DUX4_MA0468.1 6.777324071518486 - +chr1 125179793 125179803 DUX4_MA0468.1 6.777324071518486 - +chr1 125179819 125179829 DUX4_MA0468.1 6.777324071518486 - +chr1 125179842 125179852 DUX4_MA0468.1 7.600170025772626 - +chr1 125179890 125179900 DUX4_MA0468.1 8.786010990643401 - +chr1 125179900 125179910 DUX4_MA0468.1 8.786010990643401 - +chr1 125179916 125179926 DUX4_MA0468.1 6.777324071518486 - +chr1 125179994 125180004 DUX4_MA0468.1 6.777324071518486 - +chr1 125180020 125180030 DUX4_MA0468.1 6.777324071518486 - +chr1 125180069 125180079 DUX4_MA0468.1 6.777324071518486 - +chr1 125180095 125180105 DUX4_MA0468.1 7.600170025772626 - +chr1 125180140 125180150 DUX4_MA0468.1 6.777324071518486 - +chr1 125180261 125180271 DUX4_MA0468.1 6.777324071518486 - +chr1 125180287 125180297 DUX4_MA0468.1 6.777324071518486 - +chr1 125180310 125180320 DUX4_MA0468.1 7.600170025772626 - +chr1 125180358 125180368 DUX4_MA0468.1 10.110768121192173 - +chr1 125180368 125180378 DUX4_MA0468.1 6.751522792569071 - +chr1 125180384 125180394 DUX4_MA0468.1 6.777324071518486 - +chr1 125180550 125180560 DUX4_MA0468.1 8.786010990643401 - +chr1 125180566 125180576 DUX4_MA0468.1 7.862683151448747 - +chr1 125180615 125180625 DUX4_MA0468.1 6.777324071518486 - +chr1 125180641 125180651 DUX4_MA0468.1 6.777324071518486 - +chr1 125180686 125180696 DUX4_MA0468.1 6.777324071518486 - +chr1 125180830 125180840 DUX4_MA0468.1 6.777324071518486 - +chr1 125180879 125180889 DUX4_MA0468.1 6.777324071518486 - +chr1 125180905 125180915 DUX4_MA0468.1 6.777324071518486 - +chr1 125180929 125180939 DUX4_MA0468.1 6.777324071518486 - +chr1 125180962 125180972 DUX4_MA0468.1 6.777324071518486 - +chr1 125181001 125181011 DUX4_MA0468.1 6.777324071518486 - +chr1 125181027 125181037 DUX4_MA0468.1 6.777324071518486 - +chr1 125181050 125181060 DUX4_MA0468.1 6.777324071518486 - +chr1 125181099 125181109 DUX4_MA0468.1 6.777324071518486 - +chr1 125181203 125181213 DUX4_MA0468.1 10.110768121192173 - +chr1 125181229 125181239 DUX4_MA0468.1 6.777324071518486 - +chr1 125181314 125181324 DUX4_MA0468.1 8.786010990643401 - +chr1 125181327 125181337 DUX4_MA0468.1 6.777324071518486 - +chr1 125181353 125181363 DUX4_MA0468.1 6.777324071518486 - +chr1 125181402 125181412 DUX4_MA0468.1 6.777324071518486 - +chr1 125181428 125181438 DUX4_MA0468.1 7.600170025772626 - +chr1 125181473 125181483 DUX4_MA0468.1 6.777324071518486 - +chr1 125181529 125181539 DUX4_MA0468.1 8.282734130689981 - +chr1 125181545 125181555 DUX4_MA0468.1 6.777324071518486 - +chr1 125181594 125181604 DUX4_MA0468.1 6.777324071518486 - +chr1 125181643 125181653 DUX4_MA0468.1 7.600170025772626 - +chr1 125181691 125181701 DUX4_MA0468.1 10.110768121192173 - +chr1 125181701 125181711 DUX4_MA0468.1 6.751522792569071 - +chr1 125181717 125181727 DUX4_MA0468.1 6.777324071518486 - +chr1 125181821 125181831 DUX4_MA0468.1 6.406138556551586 - +chr1 125181883 125181893 DUX4_MA0468.1 8.786010990643401 - +chr1 125181899 125181909 DUX4_MA0468.1 7.862683151448747 - +chr1 125181925 125181935 DUX4_MA0468.1 6.777324071518486 - +chr1 125181948 125181958 DUX4_MA0468.1 6.777324071518486 - +chr1 125181964 125181974 DUX4_MA0468.1 6.777324071518486 - +chr1 125182009 125182019 DUX4_MA0468.1 6.777324071518486 - +chr1 125182726 125182736 DUX4_MA0468.1 7.600170025772626 - +chr1 125182771 125182781 DUX4_MA0468.1 6.777324071518486 - +chr1 125182843 125182853 DUX4_MA0468.1 6.777324071518486 - +chr1 125182892 125182902 DUX4_MA0468.1 6.777324071518486 - +chr1 125182918 125182928 DUX4_MA0468.1 6.777324071518486 - +chr1 125182941 125182951 DUX4_MA0468.1 7.600170025772626 - +chr1 125182989 125182999 DUX4_MA0468.1 8.786010990643401 - +chr1 125182999 125183009 DUX4_MA0468.1 8.786010990643401 - +chr1 125183015 125183025 DUX4_MA0468.1 6.777324071518486 - +chr1 125183093 125183103 DUX4_MA0468.1 6.777324071518486 - +chr1 125183119 125183129 DUX4_MA0468.1 6.777324071518486 - +chr1 125183168 125183178 DUX4_MA0468.1 6.777324071518486 - +chr1 125183194 125183204 DUX4_MA0468.1 7.600170025772626 - +chr1 125183239 125183249 DUX4_MA0468.1 6.777324071518486 - +chr1 125183349 125183359 DUX4_MA0468.1 6.777324071518486 - +chr1 125183398 125183408 DUX4_MA0468.1 7.600170025772626 - +chr1 125183446 125183456 DUX4_MA0468.1 10.110768121192173 - +chr1 125183456 125183466 DUX4_MA0468.1 6.751522792569071 - +chr1 125183472 125183482 DUX4_MA0468.1 6.777324071518486 - +chr1 125183576 125183586 DUX4_MA0468.1 6.406138556551586 - +chr1 125183638 125183648 DUX4_MA0468.1 8.786010990643401 - +chr1 125183654 125183664 DUX4_MA0468.1 7.862683151448747 - +chr1 125183680 125183690 DUX4_MA0468.1 6.777324071518486 - +chr1 125183703 125183713 DUX4_MA0468.1 6.777324071518486 - +chr1 125183778 125183788 DUX4_MA0468.1 8.813415104345328 - +chr1 125183823 125183833 DUX4_MA0468.1 6.777324071518486 - +chr1 125183902 125183912 DUX4_MA0468.1 8.786010990643401 - +chr1 125183967 125183977 DUX4_MA0468.1 6.777324071518486 - +chr1 125184042 125184052 DUX4_MA0468.1 6.777324071518486 - +chr1 125184098 125184108 DUX4_MA0468.1 7.712836421657374 - +chr1 125184163 125184173 DUX4_MA0468.1 6.777324071518486 - +chr1 143184763 143184773 DUX4_MA0468.1 6.777324071518486 + +chr1 143184834 143184844 DUX4_MA0468.1 6.777324071518486 + +chr1 143184883 143184893 DUX4_MA0468.1 6.777324071518486 + +chr1 143184909 143184919 DUX4_MA0468.1 6.777324071518486 + +chr1 143184987 143184997 DUX4_MA0468.1 6.777324071518486 + +chr1 143185013 143185023 DUX4_MA0468.1 8.786010990643401 + +chr1 143185084 143185094 DUX4_MA0468.1 6.777324071518486 + +chr1 143185110 143185120 DUX4_MA0468.1 6.777324071518486 + +chr1 143185231 143185241 DUX4_MA0468.1 6.777324071518486 + +chr1 143185276 143185286 DUX4_MA0468.1 7.600170025772626 + +chr1 143185302 143185312 DUX4_MA0468.1 6.777324071518486 + +chr1 143185351 143185361 DUX4_MA0468.1 6.777324071518486 + +chr1 143185377 143185387 DUX4_MA0468.1 7.600170025772626 + +chr1 143185452 143185462 DUX4_MA0468.1 6.777324071518486 + +chr1 143185478 143185488 DUX4_MA0468.1 8.804070256086383 + +chr1 143185581 143185591 DUX4_MA0468.1 6.777324071518486 + +chr1 143185653 143185663 DUX4_MA0468.1 6.777324071518486 + +chr1 143185715 143185725 DUX4_MA0468.1 6.777324071518486 + +chr1 143185748 143185758 DUX4_MA0468.1 6.777324071518486 + +chr1 143185797 143185807 DUX4_MA0468.1 6.777324071518486 + +chr1 143185846 143185856 DUX4_MA0468.1 6.777324071518486 + +chr1 143185990 143186000 DUX4_MA0468.1 6.777324071518486 + +chr1 143186035 143186045 DUX4_MA0468.1 6.777324071518486 + +chr1 143186061 143186071 DUX4_MA0468.1 6.777324071518486 + +chr1 143186126 143186136 DUX4_MA0468.1 8.786010990643401 + +chr1 143186188 143186198 DUX4_MA0468.1 6.406138556551586 + +chr1 143186256 143186266 DUX4_MA0468.1 10.110768121192173 + +chr1 143186308 143186318 DUX4_MA0468.1 6.751522792569071 + +chr1 143186318 143186328 DUX4_MA0468.1 10.110768121192173 + +chr1 143186389 143186399 DUX4_MA0468.1 6.777324071518486 + +chr1 143186415 143186425 DUX4_MA0468.1 6.777324071518486 + +chr1 143186464 143186474 DUX4_MA0468.1 6.777324071518486 + +chr1 143186480 143186490 DUX4_MA0468.1 9.607491261238753 + +chr1 143186536 143186546 DUX4_MA0468.1 6.777324071518486 + +chr1 143186581 143186591 DUX4_MA0468.1 7.600170025772626 + +chr1 143186607 143186617 DUX4_MA0468.1 6.777324071518486 + +chr1 143186630 143186640 DUX4_MA0468.1 6.777324071518486 + +chr1 143186656 143186666 DUX4_MA0468.1 6.777324071518486 + +chr1 143186760 143186770 DUX4_MA0468.1 6.777324071518486 + +chr1 143186776 143186786 DUX4_MA0468.1 8.786010990643401 + +chr1 143186786 143186796 DUX4_MA0468.1 8.786010990643401 + +chr1 143186834 143186844 DUX4_MA0468.1 7.600170025772626 + +chr1 143192163 143192173 DUX4_MA0468.1 6.777324071518486 + +chr1 143192307 143192317 DUX4_MA0468.1 6.777324071518486 + +chr1 143192352 143192362 DUX4_MA0468.1 6.777324071518486 + +chr1 143192378 143192388 DUX4_MA0468.1 6.777324071518486 + +chr1 143192427 143192437 DUX4_MA0468.1 7.862683151448747 + +chr1 143192443 143192453 DUX4_MA0468.1 8.786010990643401 + +chr1 143192609 143192619 DUX4_MA0468.1 6.777324071518486 + +chr1 143192625 143192635 DUX4_MA0468.1 6.751522792569071 + +chr1 143192635 143192645 DUX4_MA0468.1 6.695389985313673 + +chr1 143192635 143192645 DUX4_MA0468.1 6.229131907380182 - +chr1 143192648 143192658 DUX4_MA0468.1 6.777324071518486 + +chr1 143192673 143192683 DUX4_MA0468.1 7.600170025772626 + +chr1 143192696 143192706 DUX4_MA0468.1 6.777324071518486 + +chr1 143192722 143192732 DUX4_MA0468.1 6.777324071518486 + +chr1 143192843 143192853 DUX4_MA0468.1 6.777324071518486 + +chr1 143192914 143192924 DUX4_MA0468.1 6.777324071518486 + +chr1 143192963 143192973 DUX4_MA0468.1 6.777324071518486 + +chr1 143192989 143192999 DUX4_MA0468.1 6.777324071518486 + +chr1 143193067 143193077 DUX4_MA0468.1 6.777324071518486 + +chr1 143193083 143193093 DUX4_MA0468.1 8.786010990643401 + +chr1 143193093 143193103 DUX4_MA0468.1 8.786010990643401 + +chr1 143193141 143193151 DUX4_MA0468.1 7.600170025772626 + +chr1 143193164 143193174 DUX4_MA0468.1 6.777324071518486 + +chr1 143193190 143193200 DUX4_MA0468.1 6.777324071518486 + +chr1 143193239 143193249 DUX4_MA0468.1 6.777324071518486 + +chr1 143193312 143193322 DUX4_MA0468.1 6.777324071518486 + +chr1 143193357 143193367 DUX4_MA0468.1 7.600170025772626 + +chr1 143193383 143193393 DUX4_MA0468.1 6.777324071518486 + +chr1 143193432 143193442 DUX4_MA0468.1 6.777324071518486 + +chr1 143193458 143193468 DUX4_MA0468.1 6.777324071518486 + +chr1 143193533 143193543 DUX4_MA0468.1 6.777324071518486 + +chr1 143193559 143193569 DUX4_MA0468.1 10.110768121192173 + +chr1 143193662 143193672 DUX4_MA0468.1 6.777324071518486 + +chr1 143193734 143193744 DUX4_MA0468.1 6.777324071518486 + +chr1 143193799 143193809 DUX4_MA0468.1 6.777324071518486 + +chr1 143193832 143193842 DUX4_MA0468.1 6.777324071518486 + +chr1 143193881 143193891 DUX4_MA0468.1 6.777324071518486 + +chr1 143193930 143193940 DUX4_MA0468.1 6.777324071518486 + +chr1 143194074 143194084 DUX4_MA0468.1 6.777324071518486 + +chr1 143194119 143194129 DUX4_MA0468.1 6.777324071518486 + +chr1 143194145 143194155 DUX4_MA0468.1 6.777324071518486 + +chr1 143194193 143194203 DUX4_MA0468.1 7.862683151448747 + +chr1 143194209 143194219 DUX4_MA0468.1 8.786010990643401 + +chr1 143194375 143194385 DUX4_MA0468.1 6.777324071518486 + +chr1 143194391 143194401 DUX4_MA0468.1 6.751522792569071 + +chr1 143194401 143194411 DUX4_MA0468.1 6.695389985313673 + +chr1 143194401 143194411 DUX4_MA0468.1 6.229131907380182 - +chr1 143194439 143194449 DUX4_MA0468.1 7.600170025772626 + +chr1 143194462 143194472 DUX4_MA0468.1 6.777324071518486 + +chr1 143194488 143194498 DUX4_MA0468.1 6.777324071518486 + +chr1 143194609 143194619 DUX4_MA0468.1 6.777324071518486 + +chr1 143194654 143194664 DUX4_MA0468.1 7.600170025772626 + +chr1 143194680 143194690 DUX4_MA0468.1 6.777324071518486 + +chr1 143194729 143194739 DUX4_MA0468.1 6.777324071518486 + +chr1 143194755 143194765 DUX4_MA0468.1 6.777324071518486 + +chr1 143194830 143194840 DUX4_MA0468.1 6.777324071518486 + +chr1 143194846 143194856 DUX4_MA0468.1 8.786010990643401 + +chr1 143194856 143194866 DUX4_MA0468.1 8.786010990643401 + +chr1 143194904 143194914 DUX4_MA0468.1 7.600170025772626 + +chr1 143194927 143194937 DUX4_MA0468.1 6.777324071518486 + +chr1 143194953 143194963 DUX4_MA0468.1 6.777324071518486 + +chr1 143195002 143195012 DUX4_MA0468.1 6.777324071518486 + +chr1 143195018 143195028 DUX4_MA0468.1 8.282734130689981 + +chr1 143195074 143195084 DUX4_MA0468.1 6.777324071518486 + +chr1 143195119 143195129 DUX4_MA0468.1 7.600170025772626 + +chr1 143195145 143195155 DUX4_MA0468.1 6.777324071518486 + +chr1 143195194 143195204 DUX4_MA0468.1 6.777324071518486 + +chr1 143195220 143195230 DUX4_MA0468.1 6.777324071518486 + +chr1 143195314 143195324 DUX4_MA0468.1 8.786010990643401 + +chr1 143195324 143195334 DUX4_MA0468.1 8.786010990643401 + +chr1 143195372 143195382 DUX4_MA0468.1 7.600170025772626 + +chr1 143195395 143195405 DUX4_MA0468.1 6.777324071518486 + +chr1 143195421 143195431 DUX4_MA0468.1 6.777324071518486 + +chr1 143195542 143195552 DUX4_MA0468.1 6.777324071518486 + +chr1 143195587 143195597 DUX4_MA0468.1 10.933614075446313 + +chr1 143195613 143195623 DUX4_MA0468.1 6.777324071518486 + +chr1 143195662 143195672 DUX4_MA0468.1 6.777324071518486 + +chr1 143195688 143195698 DUX4_MA0468.1 6.777324071518486 + +chr1 143213024 143213034 DUX4_MA0468.1 6.777324071518486 + +chr1 143213069 143213079 DUX4_MA0468.1 6.777324071518486 + +chr1 143213095 143213105 DUX4_MA0468.1 6.777324071518486 + +chr1 143213144 143213154 DUX4_MA0468.1 7.862683151448747 + +chr1 143213160 143213170 DUX4_MA0468.1 8.786010990643401 + +chr1 143213222 143213232 DUX4_MA0468.1 6.406138556551586 + +chr1 143213326 143213336 DUX4_MA0468.1 6.777324071518486 + +chr1 143213342 143213352 DUX4_MA0468.1 6.751522792569071 + +chr1 143213352 143213362 DUX4_MA0468.1 10.110768121192173 + +chr1 143213400 143213410 DUX4_MA0468.1 7.600170025772626 + +chr1 143213423 143213433 DUX4_MA0468.1 6.777324071518486 + +chr1 143213449 143213459 DUX4_MA0468.1 6.777324071518486 + +chr1 143213570 143213580 DUX4_MA0468.1 6.777324071518486 + +chr1 143213641 143213651 DUX4_MA0468.1 6.777324071518486 + +chr1 143213690 143213700 DUX4_MA0468.1 7.712836421657374 + +chr1 143213716 143213726 DUX4_MA0468.1 6.777324071518486 + +chr1 143213794 143213804 DUX4_MA0468.1 6.777324071518486 + +chr1 143213810 143213820 DUX4_MA0468.1 8.786010990643401 + +chr1 143213820 143213830 DUX4_MA0468.1 8.786010990643401 + +chr1 143213868 143213878 DUX4_MA0468.1 7.600170025772626 + +chr1 143213891 143213901 DUX4_MA0468.1 6.777324071518486 + +chr1 143213917 143213927 DUX4_MA0468.1 6.777324071518486 + +chr1 143214005 143214015 DUX4_MA0468.1 6.777324071518486 + +chr1 143214109 143214119 DUX4_MA0468.1 6.777324071518486 + +chr1 143214158 143214168 DUX4_MA0468.1 6.777324071518486 + +chr1 143214184 143214194 DUX4_MA0468.1 6.777324071518486 + +chr1 143214262 143214272 DUX4_MA0468.1 6.777324071518486 + +chr1 143214278 143214288 DUX4_MA0468.1 8.786010990643401 + +chr1 143214288 143214298 DUX4_MA0468.1 8.786010990643401 + +chr1 143214336 143214346 DUX4_MA0468.1 7.600170025772626 + +chr1 143214359 143214369 DUX4_MA0468.1 6.777324071518486 + +chr1 143214385 143214395 DUX4_MA0468.1 6.777324071518486 + +chr1 143214434 143214444 DUX4_MA0468.1 6.777324071518486 + +chr1 143214506 143214516 DUX4_MA0468.1 6.777324071518486 + +chr1 143214551 143214561 DUX4_MA0468.1 7.600170025772626 + +chr1 143214577 143214587 DUX4_MA0468.1 6.777324071518486 + +chr1 143214626 143214636 DUX4_MA0468.1 6.777324071518486 + +chr1 143214652 143214662 DUX4_MA0468.1 6.777324071518486 + +chr1 143214727 143214737 DUX4_MA0468.1 6.777324071518486 + +chr1 143214753 143214763 DUX4_MA0468.1 10.110768121192173 + +chr1 143214856 143214866 DUX4_MA0468.1 6.777324071518486 + +chr1 143214928 143214938 DUX4_MA0468.1 6.777324071518486 + +chr1 143214993 143215003 DUX4_MA0468.1 6.777324071518486 + +chr1 143215026 143215036 DUX4_MA0468.1 6.777324071518486 + +chr1 143215075 143215085 DUX4_MA0468.1 6.777324071518486 + +chr1 143215124 143215134 DUX4_MA0468.1 6.777324071518486 + +chr1 143215268 143215278 DUX4_MA0468.1 6.777324071518486 + +chr1 143215313 143215323 DUX4_MA0468.1 6.777324071518486 + +chr1 143215339 143215349 DUX4_MA0468.1 6.777324071518486 + +chr1 143215388 143215398 DUX4_MA0468.1 7.862683151448747 + +chr1 143215404 143215414 DUX4_MA0468.1 8.786010990643401 + +chr1 143215569 143215579 DUX4_MA0468.1 6.777324071518486 + +chr1 143215585 143215595 DUX4_MA0468.1 6.751522792569071 + +chr1 143215595 143215605 DUX4_MA0468.1 6.695389985313673 + +chr1 143215595 143215605 DUX4_MA0468.1 6.229131907380182 - +chr1 143215643 143215653 DUX4_MA0468.1 7.600170025772626 + +chr1 143215666 143215676 DUX4_MA0468.1 6.777324071518486 + +chr1 143215692 143215702 DUX4_MA0468.1 6.777324071518486 + +chr1 143215813 143215823 DUX4_MA0468.1 6.777324071518486 + +chr1 143215884 143215894 DUX4_MA0468.1 6.777324071518486 + +chr1 143215933 143215943 DUX4_MA0468.1 6.777324071518486 + +chr1 143215959 143215969 DUX4_MA0468.1 6.777324071518486 + +chr1 143216011 143216021 DUX4_MA0468.1 6.777324071518486 + +chr1 143216053 143216063 DUX4_MA0468.1 8.786010990643401 + +chr1 143216063 143216073 DUX4_MA0468.1 8.786010990643401 + +chr1 143216111 143216121 DUX4_MA0468.1 7.600170025772626 + +chr1 143216134 143216144 DUX4_MA0468.1 6.777324071518486 + +chr1 143216209 143216219 DUX4_MA0468.1 6.777324071518486 + +chr1 143216281 143216291 DUX4_MA0468.1 6.777324071518486 + +chr1 143216326 143216336 DUX4_MA0468.1 7.600170025772626 + +chr1 143216352 143216362 DUX4_MA0468.1 6.777324071518486 + +chr1 143216401 143216411 DUX4_MA0468.1 6.777324071518486 + +chr1 143216427 143216437 DUX4_MA0468.1 6.777324071518486 + +chr1 143216502 143216512 DUX4_MA0468.1 6.777324071518486 + +chr1 143216528 143216538 DUX4_MA0468.1 10.110768121192173 + +chr1 143216631 143216641 DUX4_MA0468.1 6.777324071518486 + +chr1 143216703 143216713 DUX4_MA0468.1 6.777324071518486 + +chr1 143216768 143216778 DUX4_MA0468.1 6.777324071518486 + +chr1 143216801 143216811 DUX4_MA0468.1 6.777324071518486 + +chr1 143216850 143216860 DUX4_MA0468.1 6.777324071518486 + +chr1 143216899 143216909 DUX4_MA0468.1 6.777324071518486 + +chr1 143221650 143221660 DUX4_MA0468.1 7.862683151448747 + +chr1 143221666 143221676 DUX4_MA0468.1 8.786010990643401 + +chr1 143221728 143221738 DUX4_MA0468.1 6.406138556551586 + +chr1 143221832 143221842 DUX4_MA0468.1 6.777324071518486 + +chr1 143221848 143221858 DUX4_MA0468.1 6.751522792569071 + +chr1 143221906 143221916 DUX4_MA0468.1 7.600170025772626 + +chr1 143221929 143221939 DUX4_MA0468.1 6.777324071518486 + +chr1 143221955 143221965 DUX4_MA0468.1 8.786010990643401 + +chr1 143222121 143222131 DUX4_MA0468.1 7.600170025772626 + +chr1 143222147 143222157 DUX4_MA0468.1 6.777324071518486 + +chr1 143222196 143222206 DUX4_MA0468.1 6.777324071518486 + +chr1 143222222 143222232 DUX4_MA0468.1 6.777324071518486 + +chr1 143222300 143222310 DUX4_MA0468.1 6.777324071518486 + +chr1 143222316 143222326 DUX4_MA0468.1 8.786010990643401 + +chr1 143222326 143222336 DUX4_MA0468.1 8.786010990643401 + +chr1 143222397 143222407 DUX4_MA0468.1 6.777324071518486 + +chr1 143222423 143222433 DUX4_MA0468.1 6.777324071518486 + +chr1 143222472 143222482 DUX4_MA0468.1 6.777324071518486 + +chr1 143222544 143222554 DUX4_MA0468.1 6.777324071518486 + +chr1 143222589 143222599 DUX4_MA0468.1 7.600170025772626 + +chr1 143222615 143222625 DUX4_MA0468.1 6.777324071518486 + +chr1 143222664 143222674 DUX4_MA0468.1 6.777324071518486 + +chr1 143222690 143222700 DUX4_MA0468.1 6.777324071518486 + +chr1 143222768 143222778 DUX4_MA0468.1 6.777324071518486 + +chr1 143222784 143222794 DUX4_MA0468.1 8.786010990643401 + +chr1 143222794 143222804 DUX4_MA0468.1 8.786010990643401 + +chr1 143222842 143222852 DUX4_MA0468.1 7.600170025772626 + +chr1 143222865 143222875 DUX4_MA0468.1 6.777324071518486 + +chr1 143222940 143222950 DUX4_MA0468.1 6.777324071518486 + +chr1 143223012 143223022 DUX4_MA0468.1 6.777324071518486 + +chr1 143223057 143223067 DUX4_MA0468.1 7.600170025772626 + +chr1 143223083 143223093 DUX4_MA0468.1 6.777324071518486 + +chr1 143223132 143223142 DUX4_MA0468.1 6.777324071518486 + +chr1 143223233 143223243 DUX4_MA0468.1 6.777324071518486 + +chr1 143223259 143223269 DUX4_MA0468.1 10.110768121192173 + +chr1 143223362 143223372 DUX4_MA0468.1 6.777324071518486 + +chr1 143223434 143223444 DUX4_MA0468.1 6.777324071518486 + +chr1 143223499 143223509 DUX4_MA0468.1 6.777324071518486 + +chr1 143223532 143223542 DUX4_MA0468.1 6.777324071518486 + +chr1 143223581 143223591 DUX4_MA0468.1 6.777324071518486 + +chr1 143223630 143223640 DUX4_MA0468.1 6.777324071518486 + +chr1 143230923 143230933 DUX4_MA0468.1 6.777324071518486 + +chr1 143230968 143230978 DUX4_MA0468.1 6.777324071518486 + +chr1 143230994 143231004 DUX4_MA0468.1 6.777324071518486 + +chr1 143231043 143231053 DUX4_MA0468.1 7.862683151448747 + +chr1 143231059 143231069 DUX4_MA0468.1 8.786010990643401 + +chr1 143231240 143231250 DUX4_MA0468.1 6.751522792569071 + +chr1 143231250 143231260 DUX4_MA0468.1 10.110768121192173 + +chr1 143231298 143231308 DUX4_MA0468.1 7.600170025772626 + +chr1 143231321 143231331 DUX4_MA0468.1 6.777324071518486 + +chr1 143231347 143231357 DUX4_MA0468.1 6.777324071518486 + +chr1 143231396 143231406 DUX4_MA0468.1 6.777324071518486 + +chr1 143231412 143231422 DUX4_MA0468.1 8.282734130689981 + +chr1 143231468 143231478 DUX4_MA0468.1 6.777324071518486 + +chr1 143231513 143231523 DUX4_MA0468.1 7.600170025772626 + +chr1 143231539 143231549 DUX4_MA0468.1 6.777324071518486 + +chr1 143231578 143231588 DUX4_MA0468.1 6.274047211565067 + +chr1 143231588 143231598 DUX4_MA0468.1 8.786010990643401 + +chr1 143231692 143231702 DUX4_MA0468.1 6.777324071518486 + +chr1 143231708 143231718 DUX4_MA0468.1 8.786010990643401 + +chr1 143231718 143231728 DUX4_MA0468.1 8.786010990643401 + +chr1 143231766 143231776 DUX4_MA0468.1 7.600170025772626 + +chr1 143231789 143231799 DUX4_MA0468.1 6.777324071518486 + +chr1 143231815 143231825 DUX4_MA0468.1 6.777324071518486 + +chr1 143231936 143231946 DUX4_MA0468.1 6.777324071518486 + +chr1 143231981 143231991 DUX4_MA0468.1 8.796565506072980 + +chr1 143232056 143232066 DUX4_MA0468.1 6.777324071518486 + +chr1 143232082 143232092 DUX4_MA0468.1 10.110768121192173 + +chr1 143232157 143232167 DUX4_MA0468.1 6.777324071518486 + +chr1 143232183 143232193 DUX4_MA0468.1 8.786010990643401 + +chr1 143232254 143232264 DUX4_MA0468.1 6.777324071518486 + +chr1 143232280 143232290 DUX4_MA0468.1 10.110768121192173 + +chr1 143232329 143232339 DUX4_MA0468.1 6.777324071518486 + +chr1 143232401 143232411 DUX4_MA0468.1 6.777324071518486 + +chr1 143232446 143232456 DUX4_MA0468.1 7.600170025772626 + +chr1 143232472 143232482 DUX4_MA0468.1 6.777324071518486 + +chr1 143232521 143232531 DUX4_MA0468.1 6.777324071518486 + +chr1 143232547 143232557 DUX4_MA0468.1 7.600170025772626 + +chr1 143232622 143232632 DUX4_MA0468.1 6.777324071518486 + +chr1 143232648 143232658 DUX4_MA0468.1 8.804070256086383 + +chr1 143232751 143232761 DUX4_MA0468.1 6.777324071518486 + +chr1 143232823 143232833 DUX4_MA0468.1 6.777324071518486 + +chr1 143232888 143232898 DUX4_MA0468.1 6.777324071518486 + +chr1 143232921 143232931 DUX4_MA0468.1 6.777324071518486 + +chr1 143232970 143232980 DUX4_MA0468.1 6.777324071518486 + +chr1 143233019 143233029 DUX4_MA0468.1 6.777324071518486 + +chr1 143233163 143233173 DUX4_MA0468.1 6.777324071518486 + +chr1 143233208 143233218 DUX4_MA0468.1 6.777324071518486 + +chr1 143233234 143233244 DUX4_MA0468.1 6.777324071518486 + +chr1 143233283 143233293 DUX4_MA0468.1 7.862683151448747 + +chr1 143233299 143233309 DUX4_MA0468.1 8.786010990643401 + +chr1 143233464 143233474 DUX4_MA0468.1 6.777324071518486 + +chr1 143233480 143233490 DUX4_MA0468.1 6.751522792569071 + +chr1 143233490 143233500 DUX4_MA0468.1 6.695389985313673 + +chr1 143233490 143233500 DUX4_MA0468.1 6.229131907380182 - +chr1 143233538 143233548 DUX4_MA0468.1 7.600170025772626 + +chr1 143233561 143233571 DUX4_MA0468.1 6.777324071518486 + +chr1 143233587 143233597 DUX4_MA0468.1 6.777324071518486 + +chr1 143233717 143233727 DUX4_MA0468.1 6.274047211565067 + +chr1 143233727 143233737 DUX4_MA0468.1 8.786010990643401 + +chr1 143233753 143233763 DUX4_MA0468.1 6.777324071518486 + +chr1 143233792 143233802 DUX4_MA0468.1 8.786010990643401 + +chr1 143233877 143233887 DUX4_MA0468.1 6.777324071518486 + +chr1 143233903 143233913 DUX4_MA0468.1 10.110768121192173 + +chr1 143234007 143234017 DUX4_MA0468.1 6.777324071518486 + +chr1 143234056 143234066 DUX4_MA0468.1 6.777324071518486 + +chr1 143234079 143234089 DUX4_MA0468.1 6.777324071518486 + +chr1 143234105 143234115 DUX4_MA0468.1 6.777324071518486 + +chr1 143234144 143234154 DUX4_MA0468.1 6.777324071518486 + +chr1 143234177 143234187 DUX4_MA0468.1 6.777324071518486 + +chr1 143234200 143234210 DUX4_MA0468.1 6.777324071518486 + +chr1 143234226 143234236 DUX4_MA0468.1 6.777324071518486 + +chr1 143234249 143234259 DUX4_MA0468.1 6.777324071518486 + +chr1 143234275 143234285 DUX4_MA0468.1 6.777324071518486 + +chr1 143234419 143234429 DUX4_MA0468.1 6.777324071518486 + +chr1 143234464 143234474 DUX4_MA0468.1 6.777324071518486 + +chr1 143234490 143234500 DUX4_MA0468.1 6.777324071518486 + +chr1 143236989 143236999 DUX4_MA0468.1 6.777324071518486 + +chr1 143237015 143237025 DUX4_MA0468.1 6.777324071518486 + +chr1 143237158 143237168 DUX4_MA0468.1 6.777324071518486 + +chr1 143237191 143237201 DUX4_MA0468.1 6.777324071518486 + +chr1 143237240 143237250 DUX4_MA0468.1 6.777324071518486 + +chr1 143237289 143237299 DUX4_MA0468.1 6.777324071518486 + +chr1 143237338 143237348 DUX4_MA0468.1 6.276927204212911 + +chr1 143237433 143237443 DUX4_MA0468.1 6.777324071518486 + +chr1 143237478 143237488 DUX4_MA0468.1 6.777324071518486 + +chr1 143237504 143237514 DUX4_MA0468.1 6.777324071518486 + +chr1 143237553 143237563 DUX4_MA0468.1 7.862683151448747 + +chr1 143237569 143237579 DUX4_MA0468.1 8.786010990643401 + +chr1 143237735 143237745 DUX4_MA0468.1 6.777324071518486 + +chr1 143237761 143237771 DUX4_MA0468.1 6.695389985313673 + +chr1 143237761 143237771 DUX4_MA0468.1 6.229131907380182 - +chr1 143237809 143237819 DUX4_MA0468.1 7.600170025772626 + +chr1 143237832 143237842 DUX4_MA0468.1 6.777324071518486 + +chr1 143237858 143237868 DUX4_MA0468.1 6.777324071518486 + +chr1 143237979 143237989 DUX4_MA0468.1 6.777324071518486 + +chr1 143238050 143238060 DUX4_MA0468.1 6.777324071518486 + +chr1 143238099 143238109 DUX4_MA0468.1 6.777324071518486 + +chr1 143238125 143238135 DUX4_MA0468.1 6.777324071518486 + +chr1 143238203 143238213 DUX4_MA0468.1 6.777324071518486 + +chr1 143238219 143238229 DUX4_MA0468.1 8.786010990643401 + +chr1 143238229 143238239 DUX4_MA0468.1 8.786010990643401 + +chr1 143238300 143238310 DUX4_MA0468.1 6.777324071518486 + +chr1 143238326 143238336 DUX4_MA0468.1 7.712836421657374 + +chr1 143238375 143238385 DUX4_MA0468.1 6.777324071518486 + +chr1 143238447 143238457 DUX4_MA0468.1 6.777324071518486 + +chr1 143238492 143238502 DUX4_MA0468.1 7.862683151448747 + +chr1 143238518 143238528 DUX4_MA0468.1 6.777324071518486 + +chr1 143238567 143238577 DUX4_MA0468.1 6.777324071518486 + +chr1 143238593 143238603 DUX4_MA0468.1 7.600170025772626 + +chr1 143238694 143238704 DUX4_MA0468.1 10.110768121192173 + +chr1 143238797 143238807 DUX4_MA0468.1 6.777324071518486 + +chr1 143238869 143238879 DUX4_MA0468.1 6.777324071518486 + +chr1 143238934 143238944 DUX4_MA0468.1 6.777324071518486 + +chr1 143238967 143238977 DUX4_MA0468.1 6.777324071518486 + +chr1 143239016 143239026 DUX4_MA0468.1 6.777324071518486 + +chr1 143239065 143239075 DUX4_MA0468.1 6.777324071518486 + +chr1 143239209 143239219 DUX4_MA0468.1 7.862683151448747 + +chr1 143239254 143239264 DUX4_MA0468.1 6.777324071518486 + +chr1 143239280 143239290 DUX4_MA0468.1 6.777324071518486 + +chr1 143239329 143239339 DUX4_MA0468.1 7.862683151448747 + +chr1 143239345 143239355 DUX4_MA0468.1 8.786010990643401 + +chr1 143239511 143239521 DUX4_MA0468.1 6.777324071518486 + +chr1 143239527 143239537 DUX4_MA0468.1 6.751522792569071 + +chr1 143239537 143239547 DUX4_MA0468.1 10.110768121192173 + +chr1 143239585 143239595 DUX4_MA0468.1 7.600170025772626 + +chr1 143239608 143239618 DUX4_MA0468.1 6.777324071518486 + +chr1 143239634 143239644 DUX4_MA0468.1 6.777324071518486 + +chr1 143239699 143239709 DUX4_MA0468.1 8.282734130689981 + +chr1 143239755 143239765 DUX4_MA0468.1 6.777324071518486 + +chr1 143239800 143239810 DUX4_MA0468.1 7.600170025772626 + +chr1 143239826 143239836 DUX4_MA0468.1 6.777324071518486 + +chr1 143239865 143239875 DUX4_MA0468.1 6.274047211565067 + +chr1 143239875 143239885 DUX4_MA0468.1 8.786010990643401 + +chr1 143239901 143239911 DUX4_MA0468.1 6.777324071518486 + +chr1 143239979 143239989 DUX4_MA0468.1 6.777324071518486 + +chr1 143239995 143240005 DUX4_MA0468.1 8.786010990643401 + +chr1 143240005 143240015 DUX4_MA0468.1 8.786010990643401 + +chr1 143240053 143240063 DUX4_MA0468.1 7.600170025772626 + +chr1 143240076 143240086 DUX4_MA0468.1 6.777324071518486 + +chr1 143240102 143240112 DUX4_MA0468.1 6.777324071518486 + +chr1 143240151 143240161 DUX4_MA0468.1 6.777324071518486 + +chr1 143240223 143240233 DUX4_MA0468.1 6.777324071518486 + +chr1 143245484 143245494 DUX4_MA0468.1 6.777324071518486 - +chr1 143245533 143245543 DUX4_MA0468.1 6.777324071518486 - +chr1 143245559 143245569 DUX4_MA0468.1 7.600170025772626 - +chr1 143245604 143245614 DUX4_MA0468.1 6.777324071518486 - +chr1 143245660 143245670 DUX4_MA0468.1 8.282734130689981 - +chr1 143245676 143245686 DUX4_MA0468.1 6.777324071518486 - +chr1 143245725 143245735 DUX4_MA0468.1 6.777324071518486 - +chr1 143245751 143245761 DUX4_MA0468.1 7.209559561703955 - +chr1 143245774 143245784 DUX4_MA0468.1 7.600170025772626 - +chr1 143245822 143245832 DUX4_MA0468.1 9.607491261238753 - +chr1 143245832 143245842 DUX4_MA0468.1 6.751522792569071 - +chr1 143245848 143245858 DUX4_MA0468.1 6.777324071518486 - +chr1 143245952 143245962 DUX4_MA0468.1 6.406138556551586 - +chr1 143246030 143246040 DUX4_MA0468.1 7.862683151448747 - +chr1 143246056 143246066 DUX4_MA0468.1 8.786010990643401 - +chr1 143246079 143246089 DUX4_MA0468.1 6.777324071518486 - +chr1 143246105 143246115 DUX4_MA0468.1 6.777324071518486 - +chr1 143246150 143246160 DUX4_MA0468.1 6.777324071518486 - +chr1 143246294 143246304 DUX4_MA0468.1 6.777324071518486 - +chr1 143246343 143246353 DUX4_MA0468.1 6.406138556551586 - +chr1 143246369 143246379 DUX4_MA0468.1 6.777324071518486 - +chr1 143246392 143246402 DUX4_MA0468.1 6.777324071518486 - +chr1 143246425 143246435 DUX4_MA0468.1 6.777324071518486 - +chr1 143246910 143246920 DUX4_MA0468.1 6.777324071518486 - +chr1 143246982 143246992 DUX4_MA0468.1 6.777324071518486 - +chr1 143247086 143247096 DUX4_MA0468.1 6.406138556551586 - +chr1 143247148 143247158 DUX4_MA0468.1 8.786010990643401 - +chr1 143247164 143247174 DUX4_MA0468.1 7.862683151448747 - +chr1 143247213 143247223 DUX4_MA0468.1 6.777324071518486 - +chr1 143247239 143247249 DUX4_MA0468.1 6.777324071518486 - +chr1 143247284 143247294 DUX4_MA0468.1 6.777324071518486 - +chr1 143247428 143247438 DUX4_MA0468.1 6.777324071518486 - +chr1 143247477 143247487 DUX4_MA0468.1 6.777324071518486 - +chr1 143247503 143247513 DUX4_MA0468.1 6.777324071518486 - +chr1 143247526 143247536 DUX4_MA0468.1 6.777324071518486 - +chr1 143247559 143247569 DUX4_MA0468.1 6.777324071518486 - +chr1 143247598 143247608 DUX4_MA0468.1 6.777324071518486 - +chr1 143247624 143247634 DUX4_MA0468.1 6.777324071518486 - +chr1 143247647 143247657 DUX4_MA0468.1 6.777324071518486 - +chr1 143247696 143247706 DUX4_MA0468.1 6.777324071518486 - +chr1 143247826 143247836 DUX4_MA0468.1 7.600170025772626 - +chr1 143247924 143247934 DUX4_MA0468.1 6.777324071518486 - +chr1 143248028 143248038 DUX4_MA0468.1 10.110768121192173 - +chr1 143248054 143248064 DUX4_MA0468.1 6.777324071518486 - +chr1 143248139 143248149 DUX4_MA0468.1 8.786010990643401 - +chr1 143248152 143248162 DUX4_MA0468.1 6.777324071518486 - +chr1 143248178 143248188 DUX4_MA0468.1 6.777324071518486 - +chr1 143248204 143248214 DUX4_MA0468.1 6.777324071518486 - +chr1 143248253 143248263 DUX4_MA0468.1 6.777324071518486 - +chr1 143248279 143248289 DUX4_MA0468.1 7.600170025772626 - +chr1 143248519 143248529 DUX4_MA0468.1 6.777324071518486 - +chr1 143248542 143248552 DUX4_MA0468.1 7.600170025772626 - +chr1 143248590 143248600 DUX4_MA0468.1 10.110768121192173 - +chr1 143248600 143248610 DUX4_MA0468.1 6.751522792569071 - +chr1 143248616 143248626 DUX4_MA0468.1 6.777324071518486 - +chr1 143248720 143248730 DUX4_MA0468.1 6.406138556551586 - +chr1 143249902 143249912 DUX4_MA0468.1 8.786010990643401 - +chr1 143249912 143249922 DUX4_MA0468.1 8.786010990643401 - +chr1 143249928 143249938 DUX4_MA0468.1 6.777324071518486 - +chr1 143250006 143250016 DUX4_MA0468.1 6.777324071518486 - +chr1 143250032 143250042 DUX4_MA0468.1 6.777324071518486 - +chr1 143250058 143250068 DUX4_MA0468.1 6.777324071518486 - +chr1 143250081 143250091 DUX4_MA0468.1 6.777324071518486 - +chr1 143250107 143250117 DUX4_MA0468.1 7.600170025772626 - +chr1 143250152 143250162 DUX4_MA0468.1 6.777324071518486 - +chr1 143250208 143250218 DUX4_MA0468.1 9.607491261238753 - +chr1 143250224 143250234 DUX4_MA0468.1 6.777324071518486 - +chr1 143250273 143250283 DUX4_MA0468.1 6.777324071518486 - +chr1 143250299 143250309 DUX4_MA0468.1 6.777324071518486 - +chr1 143250370 143250380 DUX4_MA0468.1 10.110768121192173 - +chr1 143250380 143250390 DUX4_MA0468.1 6.751522792569071 - +chr1 143250432 143250442 DUX4_MA0468.1 10.110768121192173 - +chr1 143250500 143250510 DUX4_MA0468.1 6.406138556551586 - +chr1 143250561 143250571 DUX4_MA0468.1 7.712836421657374 - +chr1 143250576 143250586 DUX4_MA0468.1 7.862683151448747 - +chr1 143250602 143250612 DUX4_MA0468.1 6.777324071518486 - +chr1 143250628 143250638 DUX4_MA0468.1 6.777324071518486 - +chr1 143250673 143250683 DUX4_MA0468.1 6.777324071518486 - +chr1 143250817 143250827 DUX4_MA0468.1 6.777324071518486 - +chr1 143250866 143250876 DUX4_MA0468.1 6.406138556551586 - +chr1 143250892 143250902 DUX4_MA0468.1 6.274047211565067 - +chr1 143250915 143250925 DUX4_MA0468.1 6.777324071518486 - +chr1 143250948 143250958 DUX4_MA0468.1 6.777324071518486 - +chr1 143251013 143251023 DUX4_MA0468.1 6.777324071518486 - +chr1 143251036 143251046 DUX4_MA0468.1 6.777324071518486 - +chr1 143251085 143251095 DUX4_MA0468.1 6.777324071518486 - +chr1 143251189 143251199 DUX4_MA0468.1 10.110768121192173 - +chr1 143251215 143251225 DUX4_MA0468.1 6.777324071518486 - +chr1 143251300 143251310 DUX4_MA0468.1 8.786010990643401 - +chr1 143251313 143251323 DUX4_MA0468.1 6.777324071518486 - +chr1 143251339 143251349 DUX4_MA0468.1 6.777324071518486 - +chr1 143251365 143251375 DUX4_MA0468.1 6.777324071518486 - +chr1 143251414 143251424 DUX4_MA0468.1 6.777324071518486 - +chr1 143251440 143251450 DUX4_MA0468.1 7.600170025772626 - +chr1 143251485 143251495 DUX4_MA0468.1 6.777324071518486 - +chr1 143251557 143251567 DUX4_MA0468.1 6.777324071518486 - +chr1 143251606 143251616 DUX4_MA0468.1 6.777324071518486 - +chr1 143251632 143251642 DUX4_MA0468.1 6.777324071518486 - +chr1 143251655 143251665 DUX4_MA0468.1 7.600170025772626 - +chr1 143251703 143251713 DUX4_MA0468.1 10.110768121192173 - +chr1 143251713 143251723 DUX4_MA0468.1 6.751522792569071 - +chr1 143251729 143251739 DUX4_MA0468.1 6.777324071518486 - +chr1 143251765 143251775 DUX4_MA0468.1 10.110768121192173 - +chr1 143251895 143251905 DUX4_MA0468.1 8.786010990643401 - +chr1 143251911 143251921 DUX4_MA0468.1 7.862683151448747 - +chr1 143251960 143251970 DUX4_MA0468.1 6.777324071518486 - +chr1 143251986 143251996 DUX4_MA0468.1 6.777324071518486 - +chr1 143252031 143252041 DUX4_MA0468.1 6.777324071518486 - +chr1 143252175 143252185 DUX4_MA0468.1 6.777324071518486 - +chr1 143252224 143252234 DUX4_MA0468.1 6.777324071518486 - +chr1 143252273 143252283 DUX4_MA0468.1 6.777324071518486 - +chr1 143252794 143252804 DUX4_MA0468.1 6.777324071518486 - +chr1 143252866 143252876 DUX4_MA0468.1 6.777324071518486 - +chr1 143252915 143252925 DUX4_MA0468.1 6.777324071518486 - +chr1 143252941 143252951 DUX4_MA0468.1 6.777324071518486 - +chr1 143252964 143252974 DUX4_MA0468.1 7.600170025772626 - +chr1 143253012 143253022 DUX4_MA0468.1 8.786010990643401 - +chr1 143253022 143253032 DUX4_MA0468.1 8.786010990643401 - +chr1 143253038 143253048 DUX4_MA0468.1 6.777324071518486 - +chr1 143253116 143253126 DUX4_MA0468.1 6.777324071518486 - +chr1 143253142 143253152 DUX4_MA0468.1 6.777324071518486 - +chr1 143253191 143253201 DUX4_MA0468.1 6.777324071518486 - +chr1 143253217 143253227 DUX4_MA0468.1 7.600170025772626 - +chr1 143253318 143253328 DUX4_MA0468.1 8.786010990643401 - +chr1 143253334 143253344 DUX4_MA0468.1 6.777324071518486 - +chr1 143253383 143253393 DUX4_MA0468.1 10.110768121192173 - +chr1 143253409 143253419 DUX4_MA0468.1 7.600170025772626 - +chr1 143253432 143253442 DUX4_MA0468.1 6.777324071518486 - +chr1 143253480 143253490 DUX4_MA0468.1 10.110768121192173 - +chr1 143253490 143253500 DUX4_MA0468.1 6.751522792569071 - +chr1 143253506 143253516 DUX4_MA0468.1 6.777324071518486 - +chr1 143253610 143253620 DUX4_MA0468.1 6.406138556551586 - +chr1 143253673 143253683 DUX4_MA0468.1 8.786010990643401 - +chr1 143253739 143253749 DUX4_MA0468.1 6.777324071518486 - +chr1 143253765 143253775 DUX4_MA0468.1 6.777324071518486 - +chr1 143253810 143253820 DUX4_MA0468.1 6.777324071518486 - +chr1 143253905 143253915 DUX4_MA0468.1 6.276927204212910 - +chr1 143253954 143253964 DUX4_MA0468.1 6.777324071518486 - +chr1 143254003 143254013 DUX4_MA0468.1 6.777324071518486 - +chr1 143254052 143254062 DUX4_MA0468.1 6.777324071518486 - +chr1 143254085 143254095 DUX4_MA0468.1 6.777324071518486 - +chr1 143254228 143254238 DUX4_MA0468.1 6.777324071518486 - +chr1 143254254 143254264 DUX4_MA0468.1 6.777324071518486 - +chr1 143254303 143254313 DUX4_MA0468.1 6.777324071518486 - +chr1 143254329 143254339 DUX4_MA0468.1 7.600170025772626 - +chr1 143254426 143254436 DUX4_MA0468.1 6.777324071518486 - +chr1 143254475 143254485 DUX4_MA0468.1 6.777324071518486 - +chr1 143254524 143254534 DUX4_MA0468.1 6.777324071518486 - +chr1 143254557 143254567 DUX4_MA0468.1 6.777324071518486 - +chr1 143254622 143254632 DUX4_MA0468.1 6.777324071518486 - +chr1 143254694 143254704 DUX4_MA0468.1 6.777324071518486 - +chr1 143254797 143254807 DUX4_MA0468.1 10.110768121192173 - +chr1 143254823 143254833 DUX4_MA0468.1 6.777324071518486 - +chr1 143254898 143254908 DUX4_MA0468.1 6.777324071518486 - +chr1 143254924 143254934 DUX4_MA0468.1 6.777324071518486 - +chr1 143254999 143255009 DUX4_MA0468.1 7.600170025772626 - +chr1 143255044 143255054 DUX4_MA0468.1 6.777324071518486 - +chr1 143255117 143255127 DUX4_MA0468.1 6.777324071518486 - +chr1 143255166 143255176 DUX4_MA0468.1 6.777324071518486 - +chr1 143255192 143255202 DUX4_MA0468.1 6.777324071518486 - +chr1 143255215 143255225 DUX4_MA0468.1 7.600170025772626 - +chr1 143255253 143255263 DUX4_MA0468.1 6.229131907380182 + +chr1 143255253 143255263 DUX4_MA0468.1 6.695389985313673 - +chr1 143255263 143255273 DUX4_MA0468.1 6.751522792569071 - +chr1 143255279 143255289 DUX4_MA0468.1 6.777324071518486 - +chr1 143255445 143255455 DUX4_MA0468.1 8.786010990643401 - +chr1 143255461 143255471 DUX4_MA0468.1 7.862683151448747 - +chr1 143255509 143255519 DUX4_MA0468.1 6.777324071518486 - +chr1 143255535 143255545 DUX4_MA0468.1 6.777324071518486 - +chr1 143255580 143255590 DUX4_MA0468.1 6.777324071518486 - +chr1 143255724 143255734 DUX4_MA0468.1 6.777324071518486 - +chr1 143255773 143255783 DUX4_MA0468.1 6.777324071518486 - +chr1 143255822 143255832 DUX4_MA0468.1 6.777324071518486 - +chr1 143255855 143255865 DUX4_MA0468.1 6.777324071518486 - +chr1 143255920 143255930 DUX4_MA0468.1 6.777324071518486 - +chr1 143255992 143256002 DUX4_MA0468.1 6.777324071518486 - +chr1 143256095 143256105 DUX4_MA0468.1 10.110768121192173 - +chr1 143256121 143256131 DUX4_MA0468.1 6.777324071518486 - +chr1 143256196 143256206 DUX4_MA0468.1 6.777324071518486 - +chr1 143256222 143256232 DUX4_MA0468.1 6.777324071518486 - +chr1 143256271 143256281 DUX4_MA0468.1 6.777324071518486 - +chr1 143256297 143256307 DUX4_MA0468.1 7.600170025772626 - +chr1 143263926 143263936 DUX4_MA0468.1 6.777324071518486 + +chr1 143263997 143264007 DUX4_MA0468.1 6.777324071518486 + +chr1 143264046 143264056 DUX4_MA0468.1 7.862683151448747 + +chr1 143264062 143264072 DUX4_MA0468.1 8.786010990643401 + +chr1 143264124 143264134 DUX4_MA0468.1 6.406138556551586 + +chr1 143264228 143264238 DUX4_MA0468.1 6.777324071518486 + +chr1 143264244 143264254 DUX4_MA0468.1 6.751522792569071 + +chr1 143264254 143264264 DUX4_MA0468.1 10.110768121192173 + +chr1 143264324 143264334 DUX4_MA0468.1 6.777324071518486 + +chr1 143264350 143264360 DUX4_MA0468.1 6.777324071518486 + +chr1 143264471 143264481 DUX4_MA0468.1 6.777324071518486 + +chr1 143264516 143264526 DUX4_MA0468.1 7.600170025772626 + +chr1 143264542 143264552 DUX4_MA0468.1 6.777324071518486 + +chr1 143264591 143264601 DUX4_MA0468.1 6.777324071518486 + +chr1 143264617 143264627 DUX4_MA0468.1 6.777324071518486 + +chr1 143264695 143264705 DUX4_MA0468.1 6.777324071518486 + +chr1 143264711 143264721 DUX4_MA0468.1 8.786010990643401 + +chr1 143264721 143264731 DUX4_MA0468.1 8.786010990643401 + +chr1 143264769 143264779 DUX4_MA0468.1 7.600170025772626 + +chr1 143264792 143264802 DUX4_MA0468.1 6.777324071518486 + +chr1 143264910 143264920 DUX4_MA0468.1 6.777324071518486 + +chr1 143264955 143264965 DUX4_MA0468.1 6.777324071518486 + +chr1 143265030 143265040 DUX4_MA0468.1 7.862683151448747 + +chr1 143265046 143265056 DUX4_MA0468.1 8.786010990643401 + +chr1 143265212 143265222 DUX4_MA0468.1 6.777324071518486 + +chr1 143265238 143265248 DUX4_MA0468.1 6.695389985313673 + +chr1 143265238 143265248 DUX4_MA0468.1 6.229131907380182 - +chr1 143265286 143265296 DUX4_MA0468.1 7.600170025772626 + +chr1 143265309 143265319 DUX4_MA0468.1 6.777324071518486 + +chr1 143265335 143265345 DUX4_MA0468.1 6.777324071518486 + +chr1 143265384 143265394 DUX4_MA0468.1 6.777324071518486 + +chr1 143265456 143265466 DUX4_MA0468.1 6.777324071518486 + +chr1 143265501 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143216220 DUXA_MA0884.1 7.303109616072714 + +chr1 143216325 143216337 DUXA_MA0884.1 7.729293219028589 + +chr1 143216527 143216539 DUXA_MA0884.1 9.518148102165480 + +chr1 143221649 143221661 DUXA_MA0884.1 8.810588986779207 + +chr1 143221665 143221677 DUXA_MA0884.1 8.080813985932636 + +chr1 143221905 143221917 DUXA_MA0884.1 7.628536934598691 + +chr1 143221954 143221966 DUXA_MA0884.1 7.425407196949344 + +chr1 143222120 143222132 DUXA_MA0884.1 7.729293219028589 + +chr1 143222299 143222311 DUXA_MA0884.1 7.303109616072714 + +chr1 143222315 143222327 DUXA_MA0884.1 8.080813985932636 + +chr1 143222325 143222337 DUXA_MA0884.1 7.425407196949344 + +chr1 143222471 143222483 DUXA_MA0884.1 7.303109616072714 + +chr1 143222588 143222600 DUXA_MA0884.1 7.729293219028589 + +chr1 143222767 143222779 DUXA_MA0884.1 7.303109616072714 + +chr1 143222783 143222795 DUXA_MA0884.1 8.080813985932636 + +chr1 143222793 143222805 DUXA_MA0884.1 7.425407196949344 + +chr1 143222841 143222853 DUXA_MA0884.1 7.628536934598691 + +chr1 143222864 143222876 DUXA_MA0884.1 7.303109616072714 + +chr1 143222939 143222951 DUXA_MA0884.1 7.303109616072714 + +chr1 143223056 143223068 DUXA_MA0884.1 7.729293219028589 + +chr1 143223258 143223270 DUXA_MA0884.1 9.518148102165480 + +chr1 143231042 143231054 DUXA_MA0884.1 8.810588986779207 + +chr1 143231058 143231070 DUXA_MA0884.1 8.080813985932636 + +chr1 143231249 143231261 DUXA_MA0884.1 8.862741313182187 + +chr1 143231297 143231309 DUXA_MA0884.1 7.628536934598691 + +chr1 143231395 143231407 DUXA_MA0884.1 7.303109616072714 + +chr1 143231411 143231423 DUXA_MA0884.1 7.626508031592362 + +chr1 143231512 143231524 DUXA_MA0884.1 7.729293219028589 + +chr1 143231587 143231599 DUXA_MA0884.1 7.425407196949344 + +chr1 143231691 143231703 DUXA_MA0884.1 7.303109616072714 + +chr1 143231707 143231719 DUXA_MA0884.1 8.080813985932636 + +chr1 143231717 143231729 DUXA_MA0884.1 7.425407196949344 + +chr1 143231765 143231777 DUXA_MA0884.1 7.628536934598691 + +chr1 143231980 143231992 DUXA_MA0884.1 8.437864804156003 + +chr1 143232081 143232093 DUXA_MA0884.1 8.862741313182187 + +chr1 143232156 143232168 DUXA_MA0884.1 7.303109616072714 + +chr1 143232279 143232291 DUXA_MA0884.1 8.761985028752289 + +chr1 143232328 143232340 DUXA_MA0884.1 7.303109616072714 + +chr1 143232445 143232457 DUXA_MA0884.1 7.729293219028589 + +chr1 143232546 143232558 DUXA_MA0884.1 7.628536934598691 + +chr1 143232647 143232659 DUXA_MA0884.1 7.999770336018526 + +chr1 143233282 143233294 DUXA_MA0884.1 8.810588986779207 + +chr1 143233298 143233310 DUXA_MA0884.1 8.080813985932636 + +chr1 143233489 143233501 DUXA_MA0884.1 8.261510676012783 + +chr1 143233489 143233501 DUXA_MA0884.1 7.288940687287285 - +chr1 143233537 143233549 DUXA_MA0884.1 7.628536934598691 + +chr1 143233726 143233738 DUXA_MA0884.1 7.425407196949344 + +chr1 143233791 143233803 DUXA_MA0884.1 7.829107035597034 + +chr1 143233902 143233914 DUXA_MA0884.1 9.518148102165480 + +chr1 143237552 143237564 DUXA_MA0884.1 8.810588986779207 + +chr1 143237568 143237580 DUXA_MA0884.1 8.080813985932636 + +chr1 143237760 143237772 DUXA_MA0884.1 8.261510676012783 + +chr1 143237760 143237772 DUXA_MA0884.1 7.288940687287285 - +chr1 143237808 143237820 DUXA_MA0884.1 7.628536934598691 + +chr1 143238202 143238214 DUXA_MA0884.1 7.303109616072714 + +chr1 143238218 143238230 DUXA_MA0884.1 8.080813985932636 + +chr1 143238228 143238240 DUXA_MA0884.1 7.425407196949344 + +chr1 143238374 143238386 DUXA_MA0884.1 7.303109616072714 + +chr1 143238491 143238503 DUXA_MA0884.1 8.810588986779207 + +chr1 143238592 143238604 DUXA_MA0884.1 7.628536934598691 + +chr1 143238693 143238705 DUXA_MA0884.1 9.518148102165480 + +chr1 143239208 143239220 DUXA_MA0884.1 8.810588986779207 + +chr1 143239328 143239340 DUXA_MA0884.1 8.810588986779207 + +chr1 143239344 143239356 DUXA_MA0884.1 8.080813985932636 + +chr1 143239536 143239548 DUXA_MA0884.1 8.862741313182187 + +chr1 143239584 143239596 DUXA_MA0884.1 7.628536934598691 + +chr1 143239698 143239710 DUXA_MA0884.1 7.626508031592362 + +chr1 143239799 143239811 DUXA_MA0884.1 7.729293219028589 + +chr1 143239874 143239886 DUXA_MA0884.1 7.425407196949344 + +chr1 143239978 143239990 DUXA_MA0884.1 7.303109616072714 + +chr1 143239994 143240006 DUXA_MA0884.1 8.080813985932636 + +chr1 143240004 143240016 DUXA_MA0884.1 7.425407196949344 + +chr1 143240052 143240064 DUXA_MA0884.1 7.628536934598691 + +chr1 143240150 143240162 DUXA_MA0884.1 7.303109616072714 + +chr1 143245558 143245570 DUXA_MA0884.1 7.729293219028587 - +chr1 143245659 143245671 DUXA_MA0884.1 7.626508031592362 - +chr1 143245675 143245687 DUXA_MA0884.1 7.303109616072714 - +chr1 143245773 143245785 DUXA_MA0884.1 7.628536934598690 - +chr1 143245821 143245833 DUXA_MA0884.1 8.408435358841915 - +chr1 143246029 143246041 DUXA_MA0884.1 8.709832702349308 - +chr1 143246055 143246067 DUXA_MA0884.1 7.425407196949344 - +chr1 143246981 143246993 DUXA_MA0884.1 7.303109616072714 - +chr1 143247147 143247159 DUXA_MA0884.1 8.080813985932636 - +chr1 143247163 143247175 DUXA_MA0884.1 8.810588986779207 - +chr1 143247825 143247837 DUXA_MA0884.1 7.729293219028587 - +chr1 143248027 143248039 DUXA_MA0884.1 9.518148102165480 - +chr1 143248138 143248150 DUXA_MA0884.1 7.829107035597034 - +chr1 143248278 143248290 DUXA_MA0884.1 7.729293219028587 - +chr1 143248418 143248430 DUXA_MA0884.1 7.345173994067988 - +chr1 143248541 143248553 DUXA_MA0884.1 7.628536934598690 - +chr1 143248589 143248601 DUXA_MA0884.1 8.862741313182187 - +chr1 143249901 143249913 DUXA_MA0884.1 7.425407196949344 - +chr1 143249911 143249923 DUXA_MA0884.1 8.080813985932636 - +chr1 143250106 143250118 DUXA_MA0884.1 7.729293219028587 - +chr1 143250207 143250219 DUXA_MA0884.1 9.063842147825207 - +chr1 143250223 143250235 DUXA_MA0884.1 7.303109616072714 - +chr1 143250369 143250381 DUXA_MA0884.1 8.862741313182187 - +chr1 143250431 143250443 DUXA_MA0884.1 8.802777856588936 - +chr1 143250560 143250572 DUXA_MA0884.1 8.147631375600364 - +chr1 143250575 143250587 DUXA_MA0884.1 8.810588986779207 - +chr1 143251188 143251200 DUXA_MA0884.1 9.518148102165480 - +chr1 143251299 143251311 DUXA_MA0884.1 7.829107035597034 - diff --git a/demo/known_tfbs_chr1_hg38/Ddit3_Cebpa_MA0019.1.bed b/demo/known_tfbs_chr1_hg38/Ddit3_Cebpa_MA0019.1.bed new file mode 100644 index 0000000..713b7b5 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/Ddit3_Cebpa_MA0019.1.bed @@ -0,0 +1,108 @@ +chr1 779212 779223 Ddit3_Cebpa_MA0019.1 7.781546992008516 - +chr1 2548771 2548782 Ddit3_Cebpa_MA0019.1 8.142555967789912 - +chr1 3491614 3491625 Ddit3_Cebpa_MA0019.1 8.417532765049039 + +chr1 8097924 8097935 Ddit3_Cebpa_MA0019.1 7.699648772922586 - +chr1 10965677 10965688 Ddit3_Cebpa_MA0019.1 7.560083858952358 + +chr1 10986313 10986324 Ddit3_Cebpa_MA0019.1 8.673187368706193 + +chr1 12040356 12040367 Ddit3_Cebpa_MA0019.1 7.687821947974101 - +chr1 14599665 14599676 Ddit3_Cebpa_MA0019.1 9.128545506312554 - +chr1 16236873 16236884 Ddit3_Cebpa_MA0019.1 7.550380047032164 + +chr1 16544724 16544735 Ddit3_Cebpa_MA0019.1 8.597918998941227 - +chr1 16728554 16728565 Ddit3_Cebpa_MA0019.1 8.597918998941227 + +chr1 17432045 17432056 Ddit3_Cebpa_MA0019.1 7.505500668957501 - +chr1 23778631 23778642 Ddit3_Cebpa_MA0019.1 8.387682719818539 + +chr1 25997916 25997927 Ddit3_Cebpa_MA0019.1 8.947296662522769 + +chr1 26472436 26472447 Ddit3_Cebpa_MA0019.1 7.798494678434827 + +chr1 28329336 28329347 Ddit3_Cebpa_MA0019.1 8.817684448039472 + +chr1 30744003 30744014 Ddit3_Cebpa_MA0019.1 7.775248742659484 + +chr1 31549074 31549085 Ddit3_Cebpa_MA0019.1 8.009801706287771 - +chr1 32222463 32222474 Ddit3_Cebpa_MA0019.1 8.637142340278341 - +chr1 32520619 32520630 Ddit3_Cebpa_MA0019.1 7.698874392503400 + +chr1 32627993 32628004 Ddit3_Cebpa_MA0019.1 8.778546078823231 - +chr1 36307042 36307053 Ddit3_Cebpa_MA0019.1 8.443768616732440 + +chr1 36386636 36386647 Ddit3_Cebpa_MA0019.1 10.710062049624554 - +chr1 36464385 36464396 Ddit3_Cebpa_MA0019.1 9.571449304933674 + +chr1 37514629 37514640 Ddit3_Cebpa_MA0019.1 8.284000777193064 + +chr1 37692224 37692235 Ddit3_Cebpa_MA0019.1 8.185158515232787 - +chr1 38046619 38046630 Ddit3_Cebpa_MA0019.1 9.771793804232290 + +chr1 39598388 39598399 Ddit3_Cebpa_MA0019.1 8.817684448039472 + +chr1 40699864 40699875 Ddit3_Cebpa_MA0019.1 7.799895070081609 + +chr1 41361556 41361567 Ddit3_Cebpa_MA0019.1 9.061406906934511 + +chr1 41728493 41728504 Ddit3_Cebpa_MA0019.1 8.512847320701443 + +chr1 41728995 41729006 Ddit3_Cebpa_MA0019.1 7.574579941121947 + +chr1 42658619 42658630 Ddit3_Cebpa_MA0019.1 7.449416994246065 - +chr1 42931702 42931713 Ddit3_Cebpa_MA0019.1 7.906713113447103 + +chr1 43853911 43853922 Ddit3_Cebpa_MA0019.1 7.841971774630727 - +chr1 44819770 44819781 Ddit3_Cebpa_MA0019.1 8.918309227189864 - +chr1 45053080 45053091 Ddit3_Cebpa_MA0019.1 8.817684448039472 - +chr1 45394203 45394214 Ddit3_Cebpa_MA0019.1 7.996121859222194 + +chr1 45550547 45550558 Ddit3_Cebpa_MA0019.1 7.866704621777763 - +chr1 51570364 51570375 Ddit3_Cebpa_MA0019.1 7.891243325213019 - +chr1 52703397 52703408 Ddit3_Cebpa_MA0019.1 9.743622907424475 - +chr1 54376506 54376517 Ddit3_Cebpa_MA0019.1 8.060661789079457 + +chr1 54489362 54489373 Ddit3_Cebpa_MA0019.1 8.115267605294164 - +chr1 58546048 58546059 Ddit3_Cebpa_MA0019.1 8.676561681267000 - +chr1 58578291 58578302 Ddit3_Cebpa_MA0019.1 7.665548369079508 - +chr1 58578293 58578304 Ddit3_Cebpa_MA0019.1 7.574579941121947 + +chr1 60391552 60391563 Ddit3_Cebpa_MA0019.1 8.643333818809982 + +chr1 62687543 62687554 Ddit3_Cebpa_MA0019.1 7.451975363516424 + +chr1 63124984 63124995 Ddit3_Cebpa_MA0019.1 7.940035962308289 + +chr1 63523832 63523843 Ddit3_Cebpa_MA0019.1 8.136365878137516 - +chr1 64223595 64223606 Ddit3_Cebpa_MA0019.1 8.100667403803412 + +chr1 65959137 65959148 Ddit3_Cebpa_MA0019.1 8.704732875692136 - +chr1 66380775 66380786 Ddit3_Cebpa_MA0019.1 8.392019787353842 - +chr1 66380867 66380878 Ddit3_Cebpa_MA0019.1 8.055549376121444 - +chr1 67430329 67430340 Ddit3_Cebpa_MA0019.1 7.606125745725210 - +chr1 68496784 68496795 Ddit3_Cebpa_MA0019.1 7.693133289769349 - +chr1 69737761 69737772 Ddit3_Cebpa_MA0019.1 8.328255897360114 + +chr1 70359201 70359212 Ddit3_Cebpa_MA0019.1 8.490866089689591 - +chr1 72282928 72282939 Ddit3_Cebpa_MA0019.1 9.611454622040307 + +chr1 74811594 74811605 Ddit3_Cebpa_MA0019.1 8.599854044065641 + +chr1 75726854 75726865 Ddit3_Cebpa_MA0019.1 7.687821947974101 + +chr1 75727071 75727082 Ddit3_Cebpa_MA0019.1 7.724391834430501 - +chr1 77219040 77219051 Ddit3_Cebpa_MA0019.1 7.604338979119409 - +chr1 77927139 77927150 Ddit3_Cebpa_MA0019.1 7.878537752407383 + +chr1 77927232 77927243 Ddit3_Cebpa_MA0019.1 8.817684448039472 - +chr1 78005124 78005135 Ddit3_Cebpa_MA0019.1 8.060661789079457 - +chr1 79472308 79472319 Ddit3_Cebpa_MA0019.1 8.185158515232787 - +chr1 81437978 81437989 Ddit3_Cebpa_MA0019.1 8.009026889368863 - +chr1 84152994 84153005 Ddit3_Cebpa_MA0019.1 7.635112883440795 + +chr1 84388793 84388804 Ddit3_Cebpa_MA0019.1 8.176371492861470 - +chr1 84620616 84620627 Ddit3_Cebpa_MA0019.1 8.873855872626409 + +chr1 84854258 84854269 Ddit3_Cebpa_MA0019.1 7.848687707176883 + +chr1 84988650 84988661 Ddit3_Cebpa_MA0019.1 8.392019787353842 + +chr1 84997471 84997482 Ddit3_Cebpa_MA0019.1 7.884727842059779 - +chr1 86016144 86016155 Ddit3_Cebpa_MA0019.1 10.527740770607952 - +chr1 86502652 86502663 Ddit3_Cebpa_MA0019.1 7.603560955148257 + +chr1 86913973 86913984 Ddit3_Cebpa_MA0019.1 8.016410312464373 + +chr1 87328886 87328897 Ddit3_Cebpa_MA0019.1 7.980041577032242 - +chr1 89022898 89022909 Ddit3_Cebpa_MA0019.1 7.544727085666564 + +chr1 89064963 89064974 Ddit3_Cebpa_MA0019.1 8.134966042042896 - +chr1 89525343 89525354 Ddit3_Cebpa_MA0019.1 8.446519664672183 - +chr1 92537935 92537946 Ddit3_Cebpa_MA0019.1 8.024293053647327 + +chr1 93014976 93014987 Ddit3_Cebpa_MA0019.1 8.142555967789912 + +chr1 94720498 94720509 Ddit3_Cebpa_MA0019.1 8.581834517647152 + +chr1 95072654 95072665 Ddit3_Cebpa_MA0019.1 7.498977590453929 + +chr1 95096021 95096032 Ddit3_Cebpa_MA0019.1 7.737095455618064 - +chr1 95117146 95117157 Ddit3_Cebpa_MA0019.1 9.486291675164425 - +chr1 96515853 96515864 Ddit3_Cebpa_MA0019.1 9.849861797970812 - +chr1 96966998 96967009 Ddit3_Cebpa_MA0019.1 8.817684448039472 + +chr1 97848365 97848376 Ddit3_Cebpa_MA0019.1 8.918309227189864 - +chr1 97848653 97848664 Ddit3_Cebpa_MA0019.1 9.577638402534191 - +chr1 98871478 98871489 Ddit3_Cebpa_MA0019.1 7.672555525760797 + +chr1 100046817 100046828 Ddit3_Cebpa_MA0019.1 8.559853191190912 - +chr1 100077574 100077585 Ddit3_Cebpa_MA0019.1 7.906713113447103 + +chr1 101178687 101178698 Ddit3_Cebpa_MA0019.1 8.548021902010520 + +chr1 104747068 104747079 Ddit3_Cebpa_MA0019.1 7.760275830316677 + +chr1 107460220 107460231 Ddit3_Cebpa_MA0019.1 9.458118952977648 + +chr1 107499557 107499568 Ddit3_Cebpa_MA0019.1 7.517327493905986 - +chr1 109816694 109816705 Ddit3_Cebpa_MA0019.1 7.906713411064423 + +chr1 111203983 111203994 Ddit3_Cebpa_MA0019.1 7.884728139677099 - +chr1 111215955 111215966 Ddit3_Cebpa_MA0019.1 8.239550768564254 + +chr1 113783655 113783666 Ddit3_Cebpa_MA0019.1 7.515153674215685 + +chr1 113904658 113904669 Ddit3_Cebpa_MA0019.1 8.676561681267000 - +chr1 116288477 116288488 Ddit3_Cebpa_MA0019.1 7.904773604090785 - +chr1 116827143 116827154 Ddit3_Cebpa_MA0019.1 7.760275830316677 + +chr1 117929349 117929360 Ddit3_Cebpa_MA0019.1 7.606125448107891 + +chr1 119141082 119141093 Ddit3_Cebpa_MA0019.1 8.817684448039472 + +chr1 119565023 119565034 Ddit3_Cebpa_MA0019.1 9.698462463701766 - diff --git a/demo/known_tfbs_chr1_hg38/Dlx1_MA0879.1.bed b/demo/known_tfbs_chr1_hg38/Dlx1_MA0879.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/Dlx2_MA0885.1.bed b/demo/known_tfbs_chr1_hg38/Dlx2_MA0885.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/Dlx3_MA0880.1.bed b/demo/known_tfbs_chr1_hg38/Dlx3_MA0880.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/Dlx4_MA0881.1.bed b/demo/known_tfbs_chr1_hg38/Dlx4_MA0881.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/Dmbx1_MA0883.1.bed b/demo/known_tfbs_chr1_hg38/Dmbx1_MA0883.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/Dux_MA0611.1.bed b/demo/known_tfbs_chr1_hg38/Dux_MA0611.1.bed new file mode 100644 index 0000000..9b1477b --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/Dux_MA0611.1.bed @@ -0,0 +1,122 @@ +chr1 778745 778752 Dux_MA0611.1 8.366372628446992 + +chr1 1019523 1019530 Dux_MA0611.1 8.366372628446992 + +chr1 1324730 1324737 Dux_MA0611.1 8.366372628446994 - +chr1 1324749 1324756 Dux_MA0611.1 8.366372628446992 + +chr1 5992496 5992503 Dux_MA0611.1 8.366372628446992 + +chr1 5992624 5992631 Dux_MA0611.1 8.366372628446992 + +chr1 6785075 6785082 Dux_MA0611.1 9.061583741468400 - +chr1 6785115 6785122 Dux_MA0611.1 9.061583741468400 + +chr1 6785169 6785176 Dux_MA0611.1 8.366372628446994 - +chr1 8026395 8026402 Dux_MA0611.1 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- +chr1 97159084 97159091 Dux_MA0611.1 8.840041491392958 + +chr1 98688535 98688542 Dux_MA0611.1 9.061583741468400 - +chr1 98871692 98871699 Dux_MA0611.1 8.366372628446994 - +chr1 99084741 99084748 Dux_MA0611.1 9.061583741468400 + +chr1 100377449 100377456 Dux_MA0611.1 8.707652317502461 - +chr1 100895388 100895395 Dux_MA0611.1 8.707652317502461 - +chr1 101179450 101179457 Dux_MA0611.1 8.840041491392958 + diff --git a/demo/known_tfbs_chr1_hg38/E2F1_MA0024.3.bed b/demo/known_tfbs_chr1_hg38/E2F1_MA0024.3.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/E2F2_MA0864.1.bed b/demo/known_tfbs_chr1_hg38/E2F2_MA0864.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/E2F3_MA0469.2.bed b/demo/known_tfbs_chr1_hg38/E2F3_MA0469.2.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/E2F4_MA0470.1.bed b/demo/known_tfbs_chr1_hg38/E2F4_MA0470.1.bed new file mode 100644 index 0000000..8eb9ad9 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/E2F4_MA0470.1.bed @@ -0,0 +1,1413 @@ +chr1 181580 181590 E2F4_MA0470.1 7.446996814335883 + +chr1 778427 778437 E2F4_MA0470.1 9.286980313153707 - +chr1 778538 778548 E2F4_MA0470.1 7.360665838230892 + +chr1 827622 827632 E2F4_MA0470.1 7.693103770812222 + +chr1 827639 827649 E2F4_MA0470.1 10.106102002124832 - +chr1 1019452 1019462 E2F4_MA0470.1 8.134964377303339 + +chr1 1019833 1019843 E2F4_MA0470.1 7.939884315131258 - +chr1 1019859 1019869 E2F4_MA0470.1 11.311086589439187 - +chr1 1019961 1019971 E2F4_MA0470.1 10.626715604535391 + +chr1 1020019 1020029 E2F4_MA0470.1 8.142541099447666 + +chr1 1020063 1020073 E2F4_MA0470.1 7.446996814335883 - +chr1 1033048 1033058 E2F4_MA0470.1 7.610754196829117 - +chr1 1033184 1033194 E2F4_MA0470.1 7.306297110586804 + +chr1 1116267 1116277 E2F4_MA0470.1 8.859143630200000 + +chr1 1116355 1116365 E2F4_MA0470.1 7.543938734591124 - +chr1 1157696 1157706 E2F4_MA0470.1 10.492882297579975 - +chr1 1231792 1231802 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1574591 E2F4_MA0470.1 7.421037145917575 - +chr1 1574708 1574718 E2F4_MA0470.1 8.142541099447666 - +chr1 1615399 1615409 E2F4_MA0470.1 7.899016689757325 - +chr1 1615493 1615503 E2F4_MA0470.1 9.453099023003286 - +chr1 1615719 1615729 E2F4_MA0470.1 8.091216656770518 - +chr1 1692556 1692566 E2F4_MA0470.1 8.163599345088217 + +chr1 1745831 1745841 E2F4_MA0470.1 8.163599345088217 + +chr1 1778563 1778573 E2F4_MA0470.1 10.177278275899948 + +chr1 1778582 1778592 E2F4_MA0470.1 10.529211328222413 + +chr1 1890434 1890444 E2F4_MA0470.1 7.569828997132066 - +chr1 1891004 1891014 E2F4_MA0470.1 7.845109700294180 - +chr1 1891010 1891020 E2F4_MA0470.1 9.073158759571530 - +chr1 2195091 2195101 E2F4_MA0470.1 9.381922749228170 - +chr1 2227851 2227861 E2F4_MA0470.1 7.693103770812222 + +chr1 2300902 2300912 E2F4_MA0470.1 9.642183559002211 - +chr1 2391496 2391506 E2F4_MA0470.1 7.686104002344842 + +chr1 2391789 2391799 E2F4_MA0470.1 7.831161412506887 - +chr1 2412711 2412721 E2F4_MA0470.1 8.435455646235424 + 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EHF_MA0598.2 9.381328581364187 - +chr1 1615414 1615425 EHF_MA0598.2 6.650412811855551 - +chr1 1659001 1659012 EHF_MA0598.2 7.044290653318064 - +chr1 1693367 1693378 EHF_MA0598.2 6.898873660654623 + +chr1 2548924 2548935 EHF_MA0598.2 7.673736946704366 + +chr1 2578402 2578413 EHF_MA0598.2 7.673736946704366 - +chr1 2585598 2585609 EHF_MA0598.2 6.564134674106749 - +chr1 2643273 2643284 EHF_MA0598.2 10.182050030496686 - +chr1 3624787 3624798 EHF_MA0598.2 9.045323647317593 + +chr1 3665558 3665569 EHF_MA0598.2 8.199281555636990 + +chr1 3747377 3747388 EHF_MA0598.2 7.020695586187014 + +chr1 3796514 3796525 EHF_MA0598.2 6.635299509542570 - +chr1 3900410 3900421 EHF_MA0598.2 7.109236440228703 + +chr1 6026328 6026339 EHF_MA0598.2 7.690367645730622 - +chr1 6490879 6490890 EHF_MA0598.2 7.404884330012401 + +chr1 6602629 6602640 EHF_MA0598.2 7.869871203994510 + +chr1 6614097 6614108 EHF_MA0598.2 7.430989962259566 + +chr1 6785566 6785577 EHF_MA0598.2 7.309492015235938 + +chr1 7771219 7771230 EHF_MA0598.2 6.909107293162382 - +chr1 7771587 7771598 EHF_MA0598.2 6.753759595368793 + +chr1 7954288 7954299 EHF_MA0598.2 7.111048604857962 + +chr1 8397653 8397664 EHF_MA0598.2 7.188003800451295 - +chr1 8427655 8427666 EHF_MA0598.2 7.474951420092038 + +chr1 9037628 9037639 EHF_MA0598.2 7.262326052261805 - +chr1 9943404 9943415 EHF_MA0598.2 6.879254352294325 - +chr1 10940294 10940305 EHF_MA0598.2 6.850541958921869 - +chr1 11479263 11479274 EHF_MA0598.2 7.584726552035375 - +chr1 11736293 11736304 EHF_MA0598.2 6.602169995287846 + +chr1 12435899 12435910 EHF_MA0598.2 8.718213046824307 + +chr1 12449624 12449635 EHF_MA0598.2 6.564134674106749 + +chr1 14924092 14924103 EHF_MA0598.2 6.867741897412911 + +chr1 15617755 15617766 EHF_MA0598.2 6.923328493982207 - +chr1 16440729 16440740 EHF_MA0598.2 7.276946250579343 + +chr1 17054152 17054163 EHF_MA0598.2 7.321171122219051 - +chr1 17438610 17438621 EHF_MA0598.2 6.651860399981286 - +chr1 18927890 18927901 EHF_MA0598.2 7.436069670981769 - +chr1 18956834 18956845 EHF_MA0598.2 8.399601942705502 - +chr1 19485972 19485983 EHF_MA0598.2 8.265128484490333 + +chr1 19596889 19596900 EHF_MA0598.2 7.437141555070141 + +chr1 19799615 19799626 EHF_MA0598.2 10.179569779460191 - +chr1 19799693 19799704 EHF_MA0598.2 7.299458363991826 - +chr1 20508176 20508187 EHF_MA0598.2 7.174846226331741 + +chr1 20661384 20661395 EHF_MA0598.2 8.583106104563917 + +chr1 20661440 20661451 EHF_MA0598.2 12.643834045653140 + +chr1 20661514 20661525 EHF_MA0598.2 7.111048604857962 + +chr1 20661811 20661822 EHF_MA0598.2 6.779222230384317 + +chr1 21334226 21334237 EHF_MA0598.2 6.606854235946689 + +chr1 22025486 22025497 EHF_MA0598.2 8.404932930483827 - +chr1 22025504 22025515 EHF_MA0598.2 8.896646901899153 - +chr1 22052626 22052637 EHF_MA0598.2 7.339525455991299 - +chr1 22053217 22053228 EHF_MA0598.2 8.279789732370217 - +chr1 22452094 22452105 EHF_MA0598.2 6.955700907064373 - +chr1 23344346 23344357 EHF_MA0598.2 6.816337157353219 + +chr1 23800927 23800938 EHF_MA0598.2 9.868518635100088 + +chr1 23959193 23959204 EHF_MA0598.2 9.304018128624426 + +chr1 23980623 23980634 EHF_MA0598.2 6.907283935918096 + +chr1 24643339 24643350 EHF_MA0598.2 6.542861616327034 - +chr1 24930536 24930547 EHF_MA0598.2 6.938014581955090 - +chr1 25232487 25232498 EHF_MA0598.2 8.932719764018659 - +chr1 25232509 25232520 EHF_MA0598.2 6.600207536226254 - +chr1 25232584 25232595 EHF_MA0598.2 6.864101129127783 + +chr1 25239884 25239895 EHF_MA0598.2 8.674025282711826 + +chr1 25247083 25247094 EHF_MA0598.2 8.321334910714903 + +chr1 26169912 26169923 EHF_MA0598.2 8.589335639929281 + +chr1 26501081 26501092 EHF_MA0598.2 11.162229609151520 + +chr1 26541922 26541933 EHF_MA0598.2 8.168183379106130 + +chr1 26541937 26541948 EHF_MA0598.2 6.539490814561767 + +chr1 26744286 26744297 EHF_MA0598.2 7.135781299023550 - +chr1 27322258 27322269 EHF_MA0598.2 7.867485641100559 + +chr1 27660140 27660151 EHF_MA0598.2 8.891173007172865 + +chr1 28088637 28088648 EHF_MA0598.2 10.683015298720207 + +chr1 28172891 28172902 EHF_MA0598.2 6.712811419525189 + +chr1 28329016 28329027 EHF_MA0598.2 6.822501182683074 + +chr1 28369773 28369784 EHF_MA0598.2 7.156788640242953 - +chr1 28505991 28506002 EHF_MA0598.2 8.319290222233070 - +chr1 28643085 28643096 EHF_MA0598.2 8.940676786027513 - +chr1 28643111 28643122 EHF_MA0598.2 8.404632939121004 + +chr1 28648285 28648296 EHF_MA0598.2 7.230669575191055 + +chr1 28668717 28668728 EHF_MA0598.2 7.081195663989905 + +chr1 28669188 28669199 EHF_MA0598.2 9.351475640496130 + +chr1 28736797 28736808 EHF_MA0598.2 6.955700907064373 - +chr1 29182132 29182143 EHF_MA0598.2 8.821129892492920 + +chr1 30718752 30718763 EHF_MA0598.2 7.456169108977303 - +chr1 31155322 31155333 EHF_MA0598.2 8.757277974132496 + +chr1 31483270 31483281 EHF_MA0598.2 8.273173896892308 - +chr1 31549172 31549183 EHF_MA0598.2 7.120667996710568 + +chr1 31605978 31605989 EHF_MA0598.2 7.335223638386905 + +chr1 31645068 31645079 EHF_MA0598.2 6.943404579450478 + +chr1 31788476 31788487 EHF_MA0598.2 7.028728263495474 + +chr1 31788607 31788618 EHF_MA0598.2 8.235364031870413 - +chr1 32222341 32222352 EHF_MA0598.2 11.404941052220462 - +chr1 32222372 32222383 EHF_MA0598.2 10.937277950150147 + +chr1 32627789 32627800 EHF_MA0598.2 6.698203483406403 - +chr1 32650550 32650561 EHF_MA0598.2 7.330343208501069 - +chr1 32650591 32650602 EHF_MA0598.2 7.071648727194238 - +chr1 33127313 33127324 EHF_MA0598.2 8.604765722357744 - +chr1 33127592 33127603 EHF_MA0598.2 7.820966103997066 + +chr1 33182039 33182050 EHF_MA0598.2 7.249851393681497 + +chr1 33349342 33349353 EHF_MA0598.2 7.275673537630875 + +chr1 33472395 33472406 EHF_MA0598.2 6.750650168490801 + +chr1 33472656 33472667 EHF_MA0598.2 6.568203207934221 - +chr1 35557431 35557442 EHF_MA0598.2 7.996219647546337 + +chr1 36088874 36088885 EHF_MA0598.2 6.650412811855551 + +chr1 36386319 36386330 EHF_MA0598.2 6.785444551433232 - +chr1 36397777 36397788 EHF_MA0598.2 6.717677119135370 - +chr1 37474506 37474517 EHF_MA0598.2 7.662017558771909 - +chr1 37554308 37554319 EHF_MA0598.2 7.415042465397534 - +chr1 37554314 37554325 EHF_MA0598.2 7.043712801117237 - +chr1 37808192 37808203 EHF_MA0598.2 7.344530312969582 - +chr1 37859614 37859625 EHF_MA0598.2 8.439270861651739 - +chr1 37931891 37931902 EHF_MA0598.2 7.178792428565174 - +chr1 37990081 37990092 EHF_MA0598.2 8.178536785460665 + +chr1 38012644 38012655 EHF_MA0598.2 7.235909700156663 - +chr1 38012717 38012728 EHF_MA0598.2 6.974381268122221 - +chr1 38559716 38559727 EHF_MA0598.2 6.971505900832018 - +chr1 38860026 38860037 EHF_MA0598.2 7.050063287540350 - +chr1 39026784 39026795 EHF_MA0598.2 10.381511091155772 - +chr1 39215590 39215601 EHF_MA0598.2 7.537164950082484 - +chr1 39799350 39799361 EHF_MA0598.2 8.519874642567098 - +chr1 39955427 39955438 EHF_MA0598.2 6.788422994664529 + +chr1 39955664 39955675 EHF_MA0598.2 8.017866486913814 - +chr1 40040031 40040042 EHF_MA0598.2 9.045323647317593 + +chr1 40040708 40040719 EHF_MA0598.2 8.589335639929281 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EHF_MA0598.2 7.138022297191813 + +chr1 44213416 44213427 EHF_MA0598.2 6.822501182683074 + +chr1 44213456 44213467 EHF_MA0598.2 6.724704583716929 + +chr1 44631886 44631897 EHF_MA0598.2 6.711173031155211 - +chr1 44820004 44820015 EHF_MA0598.2 7.415042465397534 - +chr1 45544056 45544067 EHF_MA0598.2 6.651860399981286 - +chr1 45583819 45583830 EHF_MA0598.2 8.917674107483393 + +chr1 45583976 45583987 EHF_MA0598.2 9.766724658008631 + +chr1 45687422 45687433 EHF_MA0598.2 7.881726323296729 + +chr1 46043663 46043674 EHF_MA0598.2 7.563719210815971 - +chr1 46303650 46303661 EHF_MA0598.2 7.633437330852319 - +chr1 46325948 46325959 EHF_MA0598.2 9.443727189033824 - +chr1 46332469 46332480 EHF_MA0598.2 9.443727189033824 - +chr1 46604247 46604258 EHF_MA0598.2 8.106634277637749 + +chr1 47314039 47314050 EHF_MA0598.2 7.505423101712679 - +chr1 47314484 47314495 EHF_MA0598.2 11.350123071601708 + +chr1 51491617 51491628 EHF_MA0598.2 7.959055497332224 + +chr1 51518849 51518860 EHF_MA0598.2 7.357292908820536 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EHF_MA0598.2 8.527831664575952 + +chr1 55214501 55214512 EHF_MA0598.2 7.163495289942362 + +chr1 55215409 55215420 EHF_MA0598.2 7.344530312969582 + +chr1 55288496 55288507 EHF_MA0598.2 7.394475780330381 - +chr1 55338260 55338271 EHF_MA0598.2 8.304273771728935 + +chr1 56525654 56525665 EHF_MA0598.2 9.304018128624424 - +chr1 58546129 58546140 EHF_MA0598.2 6.820238296739163 + +chr1 58573914 58573925 EHF_MA0598.2 6.600207536226254 - +chr1 58784643 58784654 EHF_MA0598.2 8.821129892492920 - +chr1 58816468 58816479 EHF_MA0598.2 9.304018128624424 - +chr1 60391447 60391458 EHF_MA0598.2 7.058581106508517 + +chr1 61077500 61077511 EHF_MA0598.2 9.588238714139369 - +chr1 61725144 61725155 EHF_MA0598.2 8.439270861651739 - +chr1 62784061 62784072 EHF_MA0598.2 11.059171365237136 + +chr1 62801189 62801200 EHF_MA0598.2 7.533405208942311 + +chr1 63523353 63523364 EHF_MA0598.2 7.188003800451295 - +chr1 63893251 63893262 EHF_MA0598.2 9.649787815607750 - +chr1 64171932 64171943 EHF_MA0598.2 8.156615780897232 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EHF_MA0598.2 6.739419436437530 + +chr1 71081334 71081345 EHF_MA0598.2 9.201410862218587 - +chr1 71081368 71081379 EHF_MA0598.2 8.697965342958572 + +chr1 72433001 72433012 EHF_MA0598.2 6.907283935918096 + +chr1 74198297 74198308 EHF_MA0598.2 7.460343483973252 + +chr1 74198441 74198452 EHF_MA0598.2 6.726211130785486 - +chr1 74652666 74652677 EHF_MA0598.2 8.819317727863657 - +chr1 74652892 74652903 EHF_MA0598.2 7.713783989093511 - +chr1 74674830 74674841 EHF_MA0598.2 7.563719210815971 - +chr1 74733304 74733315 EHF_MA0598.2 6.727224055931036 + +chr1 75615210 75615221 EHF_MA0598.2 8.895604837049758 + +chr1 75726891 75726902 EHF_MA0598.2 8.381688927757722 - +chr1 75786669 75786680 EHF_MA0598.2 8.674025282711826 - +chr1 76154879 76154890 EHF_MA0598.2 12.035975962982457 - +chr1 76871719 76871730 EHF_MA0598.2 8.325859211382820 - +chr1 77779631 77779642 EHF_MA0598.2 6.897594838280969 + +chr1 77978772 77978783 EHF_MA0598.2 7.050063287540352 + +chr1 78656075 78656086 EHF_MA0598.2 7.542133771162086 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EHF_MA0598.2 7.563719210815973 + +chr1 87449484 87449495 EHF_MA0598.2 9.502274051954586 + +chr1 88891548 88891559 EHF_MA0598.2 6.557989056802806 + +chr1 89429352 89429363 EHF_MA0598.2 10.381511091155772 - +chr1 89552872 89552883 EHF_MA0598.2 7.442694195034297 - +chr1 89553001 89553012 EHF_MA0598.2 11.014099416259379 - +chr1 89670314 89670325 EHF_MA0598.2 7.546131165354486 - +chr1 89692860 89692871 EHF_MA0598.2 6.612807037421561 - +chr1 89693061 89693072 EHF_MA0598.2 7.394475780330381 - +chr1 89843632 89843643 EHF_MA0598.2 9.045323647317593 + +chr1 89995591 89995602 EHF_MA0598.2 7.138089586444724 - +chr1 90509858 90509869 EHF_MA0598.2 8.325859211382822 + +chr1 91055039 91055050 EHF_MA0598.2 6.978105466746859 - +chr1 91804121 91804132 EHF_MA0598.2 8.279789732370217 - +chr1 93345848 93345859 EHF_MA0598.2 11.067363982536520 + +chr1 94720588 94720599 EHF_MA0598.2 7.712975208021041 + +chr1 95072922 95072933 EHF_MA0598.2 8.987027538214299 - +chr1 97138512 97138523 EHF_MA0598.2 7.188003800451296 + +chr1 97921567 97921578 EHF_MA0598.2 7.044290653318066 + +chr1 98661592 98661603 EHF_MA0598.2 6.581582736293131 - +chr1 98688467 98688478 EHF_MA0598.2 7.563719210815971 - +chr1 98871346 98871357 EHF_MA0598.2 6.688746811766835 + +chr1 98871763 98871774 EHF_MA0598.2 7.135781299023551 + +chr1 99766632 99766643 EHF_MA0598.2 10.705084569153842 - +chr1 99850082 99850093 EHF_MA0598.2 10.090559384791199 + +chr1 99969991 99970002 EHF_MA0598.2 8.404632939121004 + +chr1 100047017 100047028 EHF_MA0598.2 8.021095251063384 - +chr1 100132995 100133006 EHF_MA0598.2 7.211049653622914 - +chr1 100133036 100133047 EHF_MA0598.2 9.579510151919592 - +chr1 100249824 100249835 EHF_MA0598.2 7.880199524644813 + +chr1 100266236 100266247 EHF_MA0598.2 6.899998509262810 - +chr1 100353162 100353173 EHF_MA0598.2 9.366234000346939 - +chr1 100523208 100523219 EHF_MA0598.2 7.563719210815971 - +chr1 100896085 100896096 EHF_MA0598.2 7.641394352861173 + +chr1 101128273 101128284 EHF_MA0598.2 6.651860399981288 + +chr1 101247721 101247732 EHF_MA0598.2 7.450574297335137 + +chr1 101309884 101309895 EHF_MA0598.2 7.409568570671243 - +chr1 101310178 101310189 EHF_MA0598.2 6.898332630472723 + +chr1 101410349 101410360 EHF_MA0598.2 7.663958358127611 + +chr1 103525948 103525959 EHF_MA0598.2 9.866697068532186 - +chr1 103784308 103784319 EHF_MA0598.2 8.325859211382822 + +chr1 104760170 104760181 EHF_MA0598.2 9.027356875450302 - +chr1 104932653 104932664 EHF_MA0598.2 7.859657052863094 - +chr1 104933140 104933151 EHF_MA0598.2 7.822413692122802 - +chr1 106996165 106996176 EHF_MA0598.2 7.409568570671243 - +chr1 107016906 107016917 EHF_MA0598.2 6.683721932532757 - +chr1 107964197 107964208 EHF_MA0598.2 6.562850005312296 - +chr1 108200416 108200427 EHF_MA0598.2 10.179569779460191 + +chr1 108693421 108693432 EHF_MA0598.2 7.311177751924284 + +chr1 108746923 108746934 EHF_MA0598.2 6.594192484093979 - +chr1 108962791 108962802 EHF_MA0598.2 8.381688927757722 + +chr1 109076017 109076028 EHF_MA0598.2 7.404595790413545 - +chr1 109425910 109425921 EHF_MA0598.2 6.612807037421563 + +chr1 109426591 109426602 EHF_MA0598.2 10.630658635666936 - +chr1 109494086 109494097 EHF_MA0598.2 8.564010317885165 + +chr1 109548491 109548502 EHF_MA0598.2 8.585595757539050 - +chr1 109548559 109548570 EHF_MA0598.2 7.663290271720376 + +chr1 109816626 109816637 EHF_MA0598.2 8.563882999311822 - +chr1 110407755 110407766 EHF_MA0598.2 6.626963437594986 - +chr1 110787855 110787866 EHF_MA0598.2 7.406043378539280 - +chr1 110873069 110873080 EHF_MA0598.2 7.822413692122802 - +chr1 110964231 110964242 EHF_MA0598.2 7.056899013478185 - +chr1 111507743 111507754 EHF_MA0598.2 6.595107230370036 - +chr1 111755525 111755536 EHF_MA0598.2 6.775027291247703 + +chr1 112619657 112619668 EHF_MA0598.2 7.537164950082484 - +chr1 112705068 112705079 EHF_MA0598.2 7.822413692122802 - +chr1 113192135 113192146 EHF_MA0598.2 11.776239416826229 + +chr1 113783702 113783713 EHF_MA0598.2 6.712811419525187 - +chr1 113812411 113812422 EHF_MA0598.2 6.603061005780561 + +chr1 113929520 113929531 EHF_MA0598.2 8.697965342958572 - +chr1 114511537 114511548 EHF_MA0598.2 7.505423101712679 + +chr1 114511866 114511877 EHF_MA0598.2 8.891173007172865 + +chr1 114716759 114716770 EHF_MA0598.2 6.879254352294325 - +chr1 114780694 114780705 EHF_MA0598.2 7.433976270193233 - +chr1 115976235 115976246 EHF_MA0598.2 7.563719210815971 - +chr1 115976316 115976327 EHF_MA0598.2 8.021095251063386 + +chr1 116515157 116515168 EHF_MA0598.2 7.733645901398868 - +chr1 116737709 116737720 EHF_MA0598.2 7.053203708167104 - +chr1 117060292 117060303 EHF_MA0598.2 7.884629563845317 + +chr1 117929721 117929732 EHF_MA0598.2 8.235364031870413 + +chr1 118960309 118960320 EHF_MA0598.2 6.913114342850793 + +chr1 119348068 119348079 EHF_MA0598.2 7.103524073965811 - +chr1 119662201 119662212 EHF_MA0598.2 7.335661791282999 + +chr1 120723950 120723961 EHF_MA0598.2 6.724704583716929 - +chr1 121184777 121184788 EHF_MA0598.2 6.836727518725072 - +chr1 121516557 121516568 EHF_MA0598.2 6.595234548943375 - +chr1 144546396 144546407 EHF_MA0598.2 8.052926840510706 - +chr1 145823706 145823717 EHF_MA0598.2 6.816337157353217 - +chr1 145927595 145927606 EHF_MA0598.2 9.090395596295348 + +chr1 145932880 145932891 EHF_MA0598.2 8.325859211382822 + +chr1 145964493 145964504 EHF_MA0598.2 6.643710815401817 + +chr1 145979507 145979518 EHF_MA0598.2 7.390060340301393 + +chr1 146037591 146037602 EHF_MA0598.2 7.211049653622914 - +chr1 146038215 146038226 EHF_MA0598.2 7.339525455991299 + +chr1 146938319 146938330 EHF_MA0598.2 8.735660535816592 + +chr1 147225624 147225635 EHF_MA0598.2 10.627755395118346 - +chr1 148152314 148152325 EHF_MA0598.2 8.735660535816592 - +chr1 149927821 149927832 EHF_MA0598.2 8.619188580797339 - +chr1 150562514 150562525 EHF_MA0598.2 9.069329492507494 + +chr1 150579593 150579604 EHF_MA0598.2 8.439270861651739 + +chr1 150765834 150765845 EHF_MA0598.2 7.409568570671245 + +chr1 150926352 150926363 EHF_MA0598.2 6.807387880370092 - 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7.743636929961570 - +chr1 154183193 154183204 EHF_MA0598.2 9.662046655221001 - +chr1 154220663 154220674 EHF_MA0598.2 7.343722736859980 + +chr1 154272562 154272573 EHF_MA0598.2 6.784830607602683 - +chr1 154558655 154558666 EHF_MA0598.2 7.720619715031347 - +chr1 154860572 154860583 EHF_MA0598.2 6.712811419525187 - +chr1 154974126 154974137 EHF_MA0598.2 8.349143163101127 - +chr1 154974169 154974180 EHF_MA0598.2 7.791113163129009 + +chr1 154974376 154974387 EHF_MA0598.2 8.049807644435841 - +chr1 154983153 154983164 EHF_MA0598.2 7.643874603897667 - +chr1 155209216 155209227 EHF_MA0598.2 7.712975208021041 + +chr1 155934560 155934571 EHF_MA0598.2 9.201894692998335 - +chr1 155946370 155946381 EHF_MA0598.2 8.636910355742925 + +chr1 156194087 156194098 EHF_MA0598.2 7.624988928718285 - +chr1 156282960 156282971 EHF_MA0598.2 6.548433688649779 - +chr1 156660284 156660295 EHF_MA0598.2 6.609208934598113 - +chr1 156728706 156728717 EHF_MA0598.2 7.264964695994480 + +chr1 156728730 156728741 EHF_MA0598.2 6.689520655070544 - +chr1 156741223 156741234 EHF_MA0598.2 8.658979626176560 + +chr1 157138385 157138396 EHF_MA0598.2 8.335406148178489 + +chr1 157512248 157512259 EHF_MA0598.2 7.563719210815973 + +chr1 157653313 157653324 EHF_MA0598.2 8.325859211382820 - +chr1 157806833 157806844 EHF_MA0598.2 11.404941052220462 + +chr1 159009095 159009106 EHF_MA0598.2 7.735439594708379 + +chr1 159077369 159077380 EHF_MA0598.2 7.110814055849752 + +chr1 159781132 159781143 EHF_MA0598.2 6.605446568674512 - +chr1 159910606 159910617 EHF_MA0598.2 7.327439967952480 + +chr1 159925031 159925042 EHF_MA0598.2 11.014099416259381 + +chr1 160262788 160262799 EHF_MA0598.2 9.013066422259852 - +chr1 160343287 160343298 EHF_MA0598.2 7.404769141987976 - +chr1 160768119 160768130 EHF_MA0598.2 7.394475780330381 - +chr1 161013811 161013822 EHF_MA0598.2 7.624988928718285 - +chr1 161045259 161045270 EHF_MA0598.2 7.984776898449442 + +chr1 161046078 161046089 EHF_MA0598.2 6.548433688649780 + +chr1 161133124 161133135 EHF_MA0598.2 8.108567874096607 + +chr1 161186114 161186125 EHF_MA0598.2 9.391093334300917 - +chr1 161389968 161389979 EHF_MA0598.2 6.766884766874804 - +chr1 161399379 161399390 EHF_MA0598.2 8.011332949859318 - +chr1 161622267 161622278 EHF_MA0598.2 8.171708571238092 - +chr1 161707184 161707195 EHF_MA0598.2 8.325859211382820 - +chr1 161718863 161718874 EHF_MA0598.2 7.466622316047260 - +chr1 161727041 161727052 EHF_MA0598.2 6.714076271703802 - +chr1 161766506 161766517 EHF_MA0598.2 6.913972894917547 - +chr1 162497804 162497815 EHF_MA0598.2 9.440580723307667 - +chr1 163697240 163697251 EHF_MA0598.2 9.888618073095619 + +chr1 165598518 165598529 EHF_MA0598.2 7.327266616378051 + +chr1 165686857 165686868 EHF_MA0598.2 8.268070344437763 + +chr1 165768885 165768896 EHF_MA0598.2 8.439270861651739 - +chr1 165828497 165828508 EHF_MA0598.2 6.964034229283274 - +chr1 165851281 165851292 EHF_MA0598.2 6.566381641366320 - +chr1 167044203 167044214 EHF_MA0598.2 8.697965342958572 - +chr1 167617615 167617626 EHF_MA0598.2 7.949062127037455 - +chr1 167628274 167628285 EHF_MA0598.2 6.568203207934221 - +chr1 167714469 167714480 EHF_MA0598.2 6.671607640122766 + +chr1 168178875 168178886 EHF_MA0598.2 7.904729001840851 + +chr1 168179341 168179352 EHF_MA0598.2 8.589335639929281 - +chr1 168226003 168226014 EHF_MA0598.2 8.619626733693433 + +chr1 168467562 168467573 EHF_MA0598.2 9.527655928984160 + +chr1 169367961 169367972 EHF_MA0598.2 8.552444382623385 - +chr1 169367983 169367994 EHF_MA0598.2 8.202991618788248 + +chr1 169794716 169794727 EHF_MA0598.2 10.381511091155772 - +chr1 169908823 169908834 EHF_MA0598.2 7.474951420092038 + +chr1 170074523 170074534 EHF_MA0598.2 8.225969211628140 - +chr1 170214382 170214393 EHF_MA0598.2 6.951399089459978 - +chr1 171314156 171314167 EHF_MA0598.2 9.488799138011581 + +chr1 171486297 171486308 EHF_MA0598.2 7.402319179914642 - +chr1 171606421 171606432 EHF_MA0598.2 9.443727189033826 + +chr1 171615493 171615504 EHF_MA0598.2 9.443727189033826 + 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8.325859211382820 - +chr1 175209281 175209292 EHF_MA0598.2 7.433976270193233 - +chr1 175599448 175599459 EHF_MA0598.2 7.206582317880196 + +chr1 176206896 176206907 EHF_MA0598.2 7.673736946704366 + +chr1 178542269 178542280 EHF_MA0598.2 7.695836036376972 - +chr1 178579784 178579795 EHF_MA0598.2 6.719410985440030 + +chr1 179081863 179081874 EHF_MA0598.2 6.612807037421561 - +chr1 179089115 179089126 EHF_MA0598.2 6.595107230370037 + +chr1 179129814 179129825 EHF_MA0598.2 10.066158129191274 + +chr1 179365973 179365984 EHF_MA0598.2 7.822413692122804 + +chr1 179882788 179882799 EHF_MA0598.2 7.563719210815973 + +chr1 181033276 181033287 EHF_MA0598.2 8.325859211382820 - +chr1 181033988 181033999 EHF_MA0598.2 8.258514976284737 + +chr1 181062613 181062624 EHF_MA0598.2 6.558660779380461 + +chr1 181062980 181062991 EHF_MA0598.2 7.690367645730624 + +chr1 181088719 181088730 EHF_MA0598.2 6.827038442084620 + +chr1 181129301 181129312 EHF_MA0598.2 7.563719210815973 + +chr1 181134700 181134711 EHF_MA0598.2 6.730755078777220 - +chr1 182427018 182427029 EHF_MA0598.2 6.655278413610716 - +chr1 182615297 182615308 EHF_MA0598.2 6.612807037421563 + +chr1 182677430 182677441 EHF_MA0598.2 8.171708571238092 - +chr1 182839438 182839449 EHF_MA0598.2 7.299458363991827 + +chr1 183048899 183048910 EHF_MA0598.2 7.406043378539280 - +chr1 183070969 183070980 EHF_MA0598.2 7.135781299023550 - diff --git a/demo/known_tfbs_chr1_hg38/ELF1_MA0473.2.bed b/demo/known_tfbs_chr1_hg38/ELF1_MA0473.2.bed new file mode 100644 index 0000000..58080a2 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/ELF1_MA0473.2.bed @@ -0,0 +1,473 @@ +chr1 827333 827344 ELF1_MA0473.2 7.376451011356234 - +chr1 827511 827522 ELF1_MA0473.2 8.534124371578166 - +chr1 827763 827774 ELF1_MA0473.2 6.674611330380206 - +chr1 1019769 1019780 ELF1_MA0473.2 9.990537051484456 - +chr1 1158064 1158075 ELF1_MA0473.2 9.321756800115340 + +chr1 1273866 1273877 ELF1_MA0473.2 6.111483926604878 - +chr1 1308119 1308130 ELF1_MA0473.2 7.372028628413679 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179081874 ELF3_MA0640.1 5.454246225709998 - +chr1 179089115 179089127 ELF3_MA0640.1 5.575629929669023 + +chr1 179129814 179129826 ELF3_MA0640.1 11.253678961153080 + +chr1 179365973 179365985 ELF3_MA0640.1 8.303332838161861 + +chr1 179882788 179882800 ELF3_MA0640.1 6.930769009191858 + +chr1 181033275 181033287 ELF3_MA0640.1 7.069902126394930 - +chr1 181033988 181034000 ELF3_MA0640.1 6.880815158576538 + +chr1 181062613 181062625 ELF3_MA0640.1 6.069229385715218 + +chr1 181062980 181062992 ELF3_MA0640.1 6.251168485909380 + +chr1 181129301 181129313 ELF3_MA0640.1 6.930769009191858 + +chr1 181134699 181134711 ELF3_MA0640.1 5.233528572946888 - +chr1 181504699 181504711 ELF3_MA0640.1 5.517962154904335 + +chr1 182030009 182030021 ELF3_MA0640.1 6.211672854319607 - diff --git a/demo/known_tfbs_chr1_hg38/ELF4_MA0641.1.bed b/demo/known_tfbs_chr1_hg38/ELF4_MA0641.1.bed new file mode 100644 index 0000000..712a3ec --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/ELF4_MA0641.1.bed @@ -0,0 +1,590 @@ +chr1 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207752047 ELK4_MA0076.2 9.451610707721198 + +chr1 207822347 207822357 ELK4_MA0076.2 7.569009846602510 - diff --git a/demo/known_tfbs_chr1_hg38/EMX1_MA0612.1.bed b/demo/known_tfbs_chr1_hg38/EMX1_MA0612.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/EMX2_MA0886.1.bed b/demo/known_tfbs_chr1_hg38/EMX2_MA0886.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/EN1_MA0027.2.bed b/demo/known_tfbs_chr1_hg38/EN1_MA0027.2.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/EN2_MA0642.1.bed b/demo/known_tfbs_chr1_hg38/EN2_MA0642.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/EOMES_MA0800.1.bed b/demo/known_tfbs_chr1_hg38/EOMES_MA0800.1.bed new file mode 100644 index 0000000..dd1da9e --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/EOMES_MA0800.1.bed @@ -0,0 +1,233 @@ +chr1 1400059 1400071 EOMES_MA0800.1 7.431728327713952 + +chr1 1678013 1678025 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a/demo/known_tfbs_chr1_hg38/ERF_MA0760.1.bed b/demo/known_tfbs_chr1_hg38/ERF_MA0760.1.bed new file mode 100644 index 0000000..526bc6c --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/ERF_MA0760.1.bed @@ -0,0 +1,360 @@ +chr1 827763 827772 ERF_MA0760.1 8.180835013090592 - +chr1 1019769 1019778 ERF_MA0760.1 7.789703400127797 - +chr1 1273866 1273875 ERF_MA0760.1 9.720560328480104 - +chr1 1308121 1308130 ERF_MA0760.1 7.502023410994157 + +chr1 1324683 1324692 ERF_MA0760.1 10.284029796611421 - +chr1 1324699 1324708 ERF_MA0760.1 7.374183203854114 + +chr1 1375196 1375205 ERF_MA0760.1 11.726412890117057 - +chr1 1375329 1375338 ERF_MA0760.1 8.026565652746674 - +chr1 1375548 1375557 ERF_MA0760.1 8.384059453637409 + +chr1 1407329 1407338 ERF_MA0760.1 7.393288238104629 - +chr1 1574645 1574654 ERF_MA0760.1 8.290473708455602 + +chr1 1615414 1615423 ERF_MA0760.1 11.726412890117057 - +chr1 1659001 1659010 ERF_MA0760.1 9.623218106596228 - +chr1 1659088 1659097 ERF_MA0760.1 9.623218106596228 - +chr1 1659173 1659182 ERF_MA0760.1 8.108152270154184 - +chr1 1678004 1678013 ERF_MA0760.1 7.532808268839630 - +chr1 1692648 1692657 ERF_MA0760.1 10.810122385515568 + +chr1 1724327 1724336 ERF_MA0760.1 9.623218106596228 - +chr1 1724411 1724420 ERF_MA0760.1 9.623218106596228 - +chr1 1724497 1724506 ERF_MA0760.1 8.108152270154184 - +chr1 1745923 1745932 ERF_MA0760.1 10.810122385515568 + +chr1 2195103 2195112 ERF_MA0760.1 7.374183203854114 - +chr1 2391754 2391763 ERF_MA0760.1 8.290473708455602 + +chr1 2391760 2391769 ERF_MA0760.1 7.601299895233367 + +chr1 2391836 2391845 ERF_MA0760.1 8.517590399834855 + +chr1 2585598 2585607 ERF_MA0760.1 7.209940120482302 - +chr1 3624789 3624798 ERF_MA0760.1 9.623218106596227 + +chr1 3624816 3624825 ERF_MA0760.1 8.290473708455602 - +chr1 3665560 3665569 ERF_MA0760.1 8.359585634315943 + +chr1 3796535 3796544 ERF_MA0760.1 8.108152270154184 - +chr1 6026127 6026136 ERF_MA0760.1 7.617365544959275 - +chr1 6026328 6026337 ERF_MA0760.1 8.180835013090592 - +chr1 6026666 6026675 ERF_MA0760.1 7.617365544959275 - +chr1 7771219 7771228 ERF_MA0760.1 9.899911108069388 - +chr1 7954290 7954299 ERF_MA0760.1 9.899911108069386 + +chr1 7961928 7961937 ERF_MA0760.1 8.290473708455602 - +chr1 8167586 8167595 ERF_MA0760.1 8.002665931294013 + +chr1 9687400 9687409 ERF_MA0760.1 10.552293556961947 - +chr1 9943385 9943394 ERF_MA0760.1 8.517590399834857 - +chr1 9943404 9943413 ERF_MA0760.1 9.899911108069388 - +chr1 10940294 10940303 ERF_MA0760.1 8.449098773441118 - +chr1 11262781 11262790 ERF_MA0760.1 9.794424769209217 - +chr1 11806036 11806045 ERF_MA0760.1 8.942856157348162 + +chr1 11980163 11980172 ERF_MA0760.1 8.863111218006118 + +chr1 12161986 12161995 ERF_MA0760.1 7.617365544959275 - +chr1 12435821 12435830 ERF_MA0760.1 8.706927601994739 - +chr1 12449626 12449635 ERF_MA0760.1 7.209940120482300 + +chr1 13700187 13700196 ERF_MA0760.1 8.108152270154184 - +chr1 15616975 15616984 ERF_MA0760.1 9.623218106596227 + +chr1 15966316 15966325 ERF_MA0760.1 7.831459268681025 + +chr1 15976119 15976128 ERF_MA0760.1 8.457528014563751 - +chr1 16440731 16440740 ERF_MA0760.1 8.457528014563749 + +chr1 16499054 16499063 ERF_MA0760.1 8.942856157348162 - +chr1 16513998 16514007 ERF_MA0760.1 7.435044106657858 - +chr1 16514401 16514410 ERF_MA0760.1 9.934654052201854 - +chr1 16896257 16896266 ERF_MA0760.1 7.435044106657857 + +chr1 17054152 17054161 ERF_MA0760.1 8.942856157348162 - +chr1 18926849 18926858 ERF_MA0760.1 9.623218106596228 - +chr1 19596891 19596900 ERF_MA0760.1 8.756000796339110 + +chr1 19597065 19597074 ERF_MA0760.1 7.796716324548558 + +chr1 19799615 19799624 ERF_MA0760.1 9.899911108069388 - +chr1 20508131 20508140 ERF_MA0760.1 7.758301892396148 + +chr1 20508178 20508187 ERF_MA0760.1 10.116975490503272 + +chr1 20508209 20508218 ERF_MA0760.1 7.313617702833474 + +chr1 20661386 20661395 ERF_MA0760.1 11.329997728093888 + +chr1 20661442 20661451 ERF_MA0760.1 7.789703400127795 + +chr1 20661516 20661525 ERF_MA0760.1 9.899911108069386 + +chr1 21334318 21334327 ERF_MA0760.1 8.942856157348162 + +chr1 21334518 21334527 ERF_MA0760.1 7.831459268681026 - +chr1 21791827 21791836 ERF_MA0760.1 7.691229985688388 - +chr1 22025504 22025513 ERF_MA0760.1 10.552293556961947 - +chr1 22026237 22026246 ERF_MA0760.1 7.435044106657857 + +chr1 23540086 23540095 ERF_MA0760.1 7.691229985688388 + +chr1 23959195 23959204 ERF_MA0760.1 7.796716324548558 + +chr1 25232487 25232496 ERF_MA0760.1 9.899911108069388 - +chr1 25233081 25233090 ERF_MA0760.1 8.002665931294013 + +chr1 25239886 25239895 ERF_MA0760.1 11.726412890117055 + +chr1 25240156 25240165 ERF_MA0760.1 7.374183203854114 + +chr1 25819944 25819953 ERF_MA0760.1 8.517590399834855 + +chr1 26169914 26169923 ERF_MA0760.1 7.789703400127795 + +chr1 26318137 26318146 ERF_MA0760.1 7.691229985688388 + +chr1 26744286 26744295 ERF_MA0760.1 8.706927601994739 - +chr1 26788194 26788203 ERF_MA0760.1 7.894058546432435 - +chr1 27773258 27773267 ERF_MA0760.1 9.720560328480104 - +chr1 28088639 28088648 ERF_MA0760.1 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35192953 35192962 ERF_MA0760.1 7.209940120482300 + +chr1 36088876 36088885 ERF_MA0760.1 11.726412890117055 + +chr1 36385916 36385925 ERF_MA0760.1 8.384059453637409 + +chr1 37554308 37554317 ERF_MA0760.1 7.343471066679748 - +chr1 37595949 37595958 ERF_MA0760.1 8.517590399834857 - +chr1 37595982 37595991 ERF_MA0760.1 8.449098773441118 - +chr1 37807735 37807744 ERF_MA0760.1 8.026565652746674 + +chr1 37808222 37808231 ERF_MA0760.1 8.674592396997635 - +chr1 37859614 37859623 ERF_MA0760.1 8.517590399834857 - +chr1 37990007 37990016 ERF_MA0760.1 7.894058546432435 + +chr1 37990083 37990092 ERF_MA0760.1 9.899911108069386 + +chr1 38012717 38012726 ERF_MA0760.1 10.413707223492400 - +chr1 38475470 38475479 ERF_MA0760.1 8.352041675703580 - +chr1 38559381 38559390 ERF_MA0760.1 7.361201601125971 + +chr1 39026784 39026793 ERF_MA0760.1 9.899911108069388 - +chr1 39576613 39576622 ERF_MA0760.1 8.290473708455602 + +chr1 39789138 39789147 ERF_MA0760.1 8.756000796339110 - +chr1 39799350 39799359 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51879217 51879226 ERF_MA0760.1 9.503495946046218 + +chr1 52032837 52032846 ERF_MA0760.1 7.627916463992326 + +chr1 52033830 52033839 ERF_MA0760.1 9.899911108069386 + +chr1 52366155 52366164 ERF_MA0760.1 8.013780706982443 + +chr1 53196804 53196813 ERF_MA0760.1 9.899911108069386 + +chr1 53220272 53220281 ERF_MA0760.1 10.552293556961946 + +chr1 53238599 53238608 ERF_MA0760.1 7.789703400127795 + +chr1 54715588 54715597 ERF_MA0760.1 8.290473708455602 + +chr1 54764650 54764659 ERF_MA0760.1 7.502023410994157 + +chr1 56525654 56525663 ERF_MA0760.1 7.796716324548559 - +chr1 56526986 56526995 ERF_MA0760.1 7.532808268839630 - +chr1 56565157 56565166 ERF_MA0760.1 9.623218106596228 - +chr1 58546762 58546771 ERF_MA0760.1 7.796716324548559 - +chr1 58784643 58784652 ERF_MA0760.1 7.789703400127797 - +chr1 58816468 58816477 ERF_MA0760.1 7.796716324548559 - +chr1 61725144 61725153 ERF_MA0760.1 8.517590399834857 - +chr1 62784063 62784072 ERF_MA0760.1 7.789703400127795 + +chr1 63124918 63124927 ERF_MA0760.1 8.878134264607729 - +chr1 63523502 63523511 ERF_MA0760.1 10.413707223492400 - +chr1 63893251 63893260 ERF_MA0760.1 7.400301162525391 - +chr1 64864254 64864263 ERF_MA0760.1 7.796716324548559 - +chr1 65420692 65420701 ERF_MA0760.1 7.894058546432435 + +chr1 65688080 65688089 ERF_MA0760.1 7.691229985688388 + +chr1 65959057 65959066 ERF_MA0760.1 7.264544508489102 - +chr1 66336217 66336226 ERF_MA0760.1 7.264544508489102 - +chr1 66402181 66402190 ERF_MA0760.1 7.758301892396148 - +chr1 67686218 67686227 ERF_MA0760.1 9.623218106596228 - +chr1 67736468 67736477 ERF_MA0760.1 7.617365544959275 - +chr1 68347586 68347595 ERF_MA0760.1 8.942856157348162 + +chr1 71081334 71081343 ERF_MA0760.1 8.121175237811689 - +chr1 74198441 74198450 ERF_MA0760.1 8.156884242922787 - +chr1 75615212 75615221 ERF_MA0760.1 7.400301162525390 + +chr1 75786669 75786678 ERF_MA0760.1 11.726412890117057 - +chr1 75909106 75909115 ERF_MA0760.1 7.617365544959275 - +chr1 75981425 75981434 ERF_MA0760.1 7.691229985688388 - +chr1 77683444 77683453 ERF_MA0760.1 8.359585634315943 - +chr1 77759837 77759846 ERF_MA0760.1 8.359585634315943 - +chr1 77978442 77978451 ERF_MA0760.1 7.467768949035921 + +chr1 78651434 78651443 ERF_MA0760.1 7.617365544959275 + +chr1 81506040 81506049 ERF_MA0760.1 8.706927601994739 + +chr1 83406024 83406033 ERF_MA0760.1 8.310512439971571 + +chr1 83485772 83485781 ERF_MA0760.1 7.601299895233367 - +chr1 84077952 84077961 ERF_MA0760.1 9.899911108069388 - +chr1 84078575 84078584 ERF_MA0760.1 7.967922987161547 + +chr1 84506206 84506215 ERF_MA0760.1 7.758301892396148 - +chr1 85148779 85148788 ERF_MA0760.1 7.796716324548559 - +chr1 85259677 85259686 ERF_MA0760.1 8.026565652746674 + +chr1 85259684 85259693 ERF_MA0760.1 8.942856157348162 + +chr1 85276527 85276536 ERF_MA0760.1 8.290473708455602 - +chr1 85276967 85276976 ERF_MA0760.1 7.264544508489102 - +chr1 86015819 86015828 ERF_MA0760.1 7.435044106657858 - +chr1 86395917 86395926 ERF_MA0760.1 7.393288238104629 - +chr1 86419517 86419526 ERF_MA0760.1 7.617365544959275 - +chr1 88180832 88180841 ERF_MA0760.1 8.706927601994739 - +chr1 88993164 88993173 ERF_MA0760.1 7.606250769270846 + +chr1 89363701 89363710 ERF_MA0760.1 7.532808268839630 - +chr1 89429352 89429361 ERF_MA0760.1 9.899911108069388 - +chr1 89525092 89525101 ERF_MA0760.1 7.268696864993944 + +chr1 89843634 89843643 ERF_MA0760.1 9.623218106596227 + +chr1 90127428 90127437 ERF_MA0760.1 8.706927601994739 + +chr1 91501281 91501290 ERF_MA0760.1 8.013780706982443 - +chr1 91572243 91572252 ERF_MA0760.1 7.817143286523649 - +chr1 91803878 91803887 ERF_MA0760.1 9.623218106596228 - +chr1 92486926 92486935 ERF_MA0760.1 9.367739292009931 - +chr1 92537692 92537701 ERF_MA0760.1 7.532808268839630 + +chr1 92538295 92538304 ERF_MA0760.1 8.310512439971571 + +chr1 93345894 93345903 ERF_MA0760.1 8.942856157348162 - +chr1 93615699 93615708 ERF_MA0760.1 7.467768949035921 - +chr1 94418467 94418476 ERF_MA0760.1 7.361201601125971 + +chr1 97461976 97461985 ERF_MA0760.1 8.180835013090592 - +chr1 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156728446 ERF_MA0760.1 10.116975490503272 + +chr1 156728708 156728717 ERF_MA0760.1 9.259526380029286 + +chr1 156740939 156740948 ERF_MA0760.1 10.284029796611421 - +chr1 156741225 156741234 ERF_MA0760.1 8.180835013090590 + +chr1 157138387 157138396 ERF_MA0760.1 7.796716324548558 + +chr1 157562632 157562641 ERF_MA0760.1 8.706927601994739 + +chr1 157806835 157806844 ERF_MA0760.1 7.393288238104628 + +chr1 159009097 159009106 ERF_MA0760.1 10.284029796611419 + +chr1 159068281 159068290 ERF_MA0760.1 8.449098773441118 - +chr1 160031877 160031886 ERF_MA0760.1 7.967922987161547 - +chr1 160032014 160032023 ERF_MA0760.1 9.636003052360458 - +chr1 160098937 160098946 ERF_MA0760.1 7.433024597981617 - +chr1 160343287 160343296 ERF_MA0760.1 10.284029796611421 - +chr1 160837729 160837738 ERF_MA0760.1 7.796716324548559 - +chr1 161013811 161013820 ERF_MA0760.1 9.367739292009931 - +chr1 161013913 161013922 ERF_MA0760.1 7.796716324548559 - +chr1 161046026 161046035 ERF_MA0760.1 8.517590399834857 - +chr1 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162498266 ESR2_MA0258.2 8.339876960583135 + +chr1 166875911 166875925 ESR2_MA0258.2 9.101180980176773 + +chr1 167721890 167721904 ESR2_MA0258.2 7.271709729016891 - +chr1 169485604 169485618 ESR2_MA0258.2 7.218958666146570 + +chr1 169794649 169794663 ESR2_MA0258.2 11.180025872698581 + +chr1 169894387 169894401 ESR2_MA0258.2 7.358484453871616 - +chr1 170074889 170074903 ESR2_MA0258.2 7.212833597523389 + +chr1 170932273 170932287 ESR2_MA0258.2 7.236415785090210 + +chr1 171841580 171841594 ESR2_MA0258.2 8.808973896256507 + +chr1 172443821 172443835 ESR2_MA0258.2 11.279790343817437 - +chr1 172725070 172725084 ESR2_MA0258.2 9.034789728662954 - +chr1 172746531 172746545 ESR2_MA0258.2 7.070563747675764 - +chr1 173414202 173414216 ESR2_MA0258.2 7.132690596362627 + +chr1 173477032 173477046 ESR2_MA0258.2 7.386653422312051 + +chr1 173477032 173477046 ESR2_MA0258.2 8.353237395954817 - +chr1 173867887 173867901 ESR2_MA0258.2 10.051369043645133 - +chr1 173868466 173868480 ESR2_MA0258.2 9.130213518152754 + +chr1 174998950 174998964 ESR2_MA0258.2 7.057572510789939 - +chr1 174999005 174999019 ESR2_MA0258.2 7.057572510789939 - +chr1 175209675 175209689 ESR2_MA0258.2 10.132692140443480 + +chr1 175307175 175307189 ESR2_MA0258.2 10.516887403184171 - +chr1 175307303 175307317 ESR2_MA0258.2 7.871543589472564 - +chr1 175599217 175599231 ESR2_MA0258.2 9.472829090643367 + +chr1 176207434 176207448 ESR2_MA0258.2 7.281761728518061 + +chr1 176898012 176898026 ESR2_MA0258.2 8.471172581173077 - +chr1 177946158 177946172 ESR2_MA0258.2 7.225795817855903 + +chr1 178725811 178725825 ESR2_MA0258.2 7.221601238423786 + +chr1 178725939 178725953 ESR2_MA0258.2 9.020282716898883 + +chr1 178725939 178725953 ESR2_MA0258.2 12.364288113803999 - +chr1 178973315 178973329 ESR2_MA0258.2 7.872521062743577 + +chr1 179883133 179883147 ESR2_MA0258.2 9.246367206385356 + +chr1 179883133 179883147 ESR2_MA0258.2 11.034101084970320 - +chr1 181044715 181044729 ESR2_MA0258.2 8.359357146775343 - +chr1 181062417 181062431 ESR2_MA0258.2 8.906431342674630 + +chr1 181088685 181088699 ESR2_MA0258.2 7.595241584409360 - +chr1 182029966 182029980 ESR2_MA0258.2 7.662560783972438 + +chr1 182615495 182615509 ESR2_MA0258.2 8.063715238846113 - +chr1 182789804 182789818 ESR2_MA0258.2 7.363436132998723 + +chr1 183023967 183023981 ESR2_MA0258.2 11.265520744520252 + +chr1 183471755 183471769 ESR2_MA0258.2 8.016566593509623 + +chr1 183471755 183471769 ESR2_MA0258.2 10.244265966542267 - +chr1 183471761 183471775 ESR2_MA0258.2 8.187236275078533 + +chr1 183897990 183898004 ESR2_MA0258.2 8.769779007656492 + +chr1 184036879 184036893 ESR2_MA0258.2 7.048576825205347 - diff --git a/demo/known_tfbs_chr1_hg38/ESRRB_MA0141.3.bed b/demo/known_tfbs_chr1_hg38/ESRRB_MA0141.3.bed new file mode 100644 index 0000000..7982c92 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/ESRRB_MA0141.3.bed @@ -0,0 +1,118 @@ +chr1 1407340 1407350 ESRRB_MA0141.3 5.501225970265939 + +chr1 3900373 3900383 ESRRB_MA0141.3 8.287257208191797 + +chr1 3910786 3910796 ESRRB_MA0141.3 6.476485128081886 + +chr1 4267612 4267622 ESRRB_MA0141.3 6.586442078826947 - +chr1 7954118 7954128 ESRRB_MA0141.3 6.206829823668464 - +chr1 8183007 8183017 ESRRB_MA0141.3 5.512681536429899 - +chr1 9163031 9163041 ESRRB_MA0141.3 6.159831495957606 + +chr1 9588756 9588766 ESRRB_MA0141.3 6.989070187571494 + +chr1 9629573 9629583 ESRRB_MA0141.3 10.211330187866350 - +chr1 10210265 10210275 ESRRB_MA0141.3 5.940100353662029 - +chr1 13713378 13713388 ESRRB_MA0141.3 5.432724384533528 - +chr1 15524934 15524944 ESRRB_MA0141.3 10.967206709549332 + +chr1 16441174 16441184 ESRRB_MA0141.3 5.919144074383553 - +chr1 16905378 16905388 ESRRB_MA0141.3 5.496240694131008 + +chr1 16905573 16905583 ESRRB_MA0141.3 7.860025776695865 + +chr1 17054248 17054258 ESRRB_MA0141.3 5.749623159509225 - +chr1 18956296 18956306 ESRRB_MA0141.3 5.782553393109083 + +chr1 19477583 19477593 ESRRB_MA0141.3 6.410848259609038 + +chr1 19596830 19596840 ESRRB_MA0141.3 7.100330733929362 + +chr1 19799451 19799461 ESRRB_MA0141.3 10.211330187866350 - +chr1 19799478 19799488 ESRRB_MA0141.3 9.942022018599712 - +chr1 20507899 20507909 ESRRB_MA0141.3 9.688826130117553 - +chr1 21782955 21782965 ESRRB_MA0141.3 5.231580743860913 - +chr1 22039857 22039867 ESRRB_MA0141.3 6.794427714751311 - +chr1 22451707 22451717 ESRRB_MA0141.3 8.398517754549665 + +chr1 26620718 26620728 ESRRB_MA0141.3 5.272956821992626 - +chr1 26865592 26865602 ESRRB_MA0141.3 6.765599738537051 - +chr1 28518925 28518935 ESRRB_MA0141.3 7.736800506194236 - +chr1 28669928 28669938 ESRRB_MA0141.3 5.336674620494944 - +chr1 29182264 29182274 ESRRB_MA0141.3 8.913143167246048 - +chr1 30743954 30743964 ESRRB_MA0141.3 10.211330187866350 - +chr1 32981323 32981333 ESRRB_MA0141.3 5.877839555350695 + +chr1 33036683 33036693 ESRRB_MA0141.3 9.922215577411187 - +chr1 33180889 33180899 ESRRB_MA0141.3 5.496240694131008 - +chr1 33181133 33181143 ESRRB_MA0141.3 8.682768549348920 - +chr1 34860126 34860136 ESRRB_MA0141.3 9.958134299384191 - +chr1 34866473 34866483 ESRRB_MA0141.3 9.980955569969224 + +chr1 36224006 36224016 ESRRB_MA0141.3 11.754834451916400 + +chr1 38559493 38559503 ESRRB_MA0141.3 8.913143167246050 + +chr1 38559524 38559534 ESRRB_MA0141.3 6.394052557938280 + +chr1 39955815 39955825 ESRRB_MA0141.3 6.557672668568046 + +chr1 40097622 40097632 ESRRB_MA0141.3 10.211330187866352 + +chr1 40532027 40532037 ESRRB_MA0141.3 11.501638563434241 + +chr1 41487416 41487426 ESRRB_MA0141.3 7.540042836819664 + +chr1 41727501 41727511 ESRRB_MA0141.3 6.413162557273528 - +chr1 41752062 41752072 ESRRB_MA0141.3 5.403082754429449 - +chr1 42658202 42658212 ESRRB_MA0141.3 6.992759307517634 - +chr1 42682720 42682730 ESRRB_MA0141.3 7.707509391532975 + +chr1 43650432 43650442 ESRRB_MA0141.3 7.422234967438666 + +chr1 44684640 44684650 ESRRB_MA0141.3 8.017949038925158 + +chr1 45304365 45304375 ESRRB_MA0141.3 5.113968143974284 + +chr1 45500283 45500293 ESRRB_MA0141.3 6.862620518785670 - +chr1 45687592 45687602 ESRRB_MA0141.3 10.211330187866352 + +chr1 50333424 50333434 ESRRB_MA0141.3 10.211330187866352 + +chr1 50724720 50724730 ESRRB_MA0141.3 10.378796742579663 + +chr1 51285103 51285113 ESRRB_MA0141.3 5.222375782721997 + +chr1 53838661 53838671 ESRRB_MA0141.3 6.092423595936973 + +chr1 54053110 54053120 ESRRB_MA0141.3 5.231580743860913 + +chr1 55205251 55205261 ESRRB_MA0141.3 7.215902233833603 + +chr1 56135657 56135667 ESRRB_MA0141.3 7.561889631214965 + +chr1 57167932 57167942 ESRRB_MA0141.3 9.830761472241845 + +chr1 57547131 57547141 ESRRB_MA0141.3 6.377243835300521 + +chr1 58392285 58392295 ESRRB_MA0141.3 9.577565583759684 - +chr1 58545979 58545989 ESRRB_MA0141.3 8.417830564742374 - +chr1 58573907 58573917 ESRRB_MA0141.3 9.958134299384193 + +chr1 58699426 58699436 ESRRB_MA0141.3 10.211330187866352 + +chr1 58699579 58699589 ESRRB_MA0141.3 10.211330187866352 + +chr1 59026479 59026489 ESRRB_MA0141.3 5.940100353662029 - +chr1 59433109 59433119 ESRRB_MA0141.3 5.186457060748990 - +chr1 59697087 59697097 ESRRB_MA0141.3 9.939488034397121 + +chr1 60978565 60978575 ESRRB_MA0141.3 6.541231826269152 - +chr1 61050129 61050139 ESRRB_MA0141.3 5.498161987764110 + +chr1 61332870 61332880 ESRRB_MA0141.3 7.469098122315760 - +chr1 63593997 63594007 ESRRB_MA0141.3 8.913143167246050 + +chr1 64957053 64957063 ESRRB_MA0141.3 6.794614291647372 + +chr1 66336112 66336122 ESRRB_MA0141.3 6.719762018304853 - +chr1 66396194 66396204 ESRRB_MA0141.3 9.464115816494219 + +chr1 67685494 67685504 ESRRB_MA0141.3 5.266492073154978 - +chr1 68496159 68496169 ESRRB_MA0141.3 5.559531638037519 + +chr1 70205013 70205023 ESRRB_MA0141.3 7.085763445101637 - +chr1 70411863 70411873 ESRRB_MA0141.3 9.694170790967375 + +chr1 72433211 72433221 ESRRB_MA0141.3 5.423720725792173 + +chr1 72623291 72623301 ESRRB_MA0141.3 12.414533663319846 + +chr1 74812324 74812334 ESRRB_MA0141.3 5.270236260893972 - +chr1 75797418 75797428 ESRRB_MA0141.3 5.541450946688802 - +chr1 76294715 76294725 ESRRB_MA0141.3 9.541646861786681 + +chr1 76294721 76294731 ESRRB_MA0141.3 5.665813013067632 + +chr1 78377741 78377751 ESRRB_MA0141.3 5.850879477262627 + +chr1 78854944 78854954 ESRRB_MA0141.3 5.112661238988735 + +chr1 79461036 79461046 ESRRB_MA0141.3 6.040772312963493 - +chr1 80639628 80639638 ESRRB_MA0141.3 7.774952456937182 - +chr1 81505868 81505878 ESRRB_MA0141.3 5.170524837310015 + +chr1 83485992 83486002 ESRRB_MA0141.3 7.245955195999795 + +chr1 83500235 83500245 ESRRB_MA0141.3 7.159070726487398 + +chr1 84480052 84480062 ESRRB_MA0141.3 8.309104002587098 + +chr1 84573128 84573138 ESRRB_MA0141.3 10.473188226659358 + +chr1 85048004 85048014 ESRRB_MA0141.3 7.326057657159131 + +chr1 85335273 85335283 ESRRB_MA0141.3 8.172793629547622 - +chr1 85335363 85335373 ESRRB_MA0141.3 6.248720649873066 + +chr1 86502733 86502743 ESRRB_MA0141.3 5.446081870772055 - +chr1 87132005 87132015 ESRRB_MA0141.3 5.496240694131008 + +chr1 87450089 87450099 ESRRB_MA0141.3 9.939488034397119 - +chr1 88868432 88868442 ESRRB_MA0141.3 6.460025712150622 - +chr1 89300067 89300077 ESRRB_MA0141.3 5.095002955579647 + +chr1 89611767 89611777 ESRRB_MA0141.3 5.170089012509433 - +chr1 89694233 89694243 ESRRB_MA0141.3 5.430280994164075 - +chr1 90509909 90509919 ESRRB_MA0141.3 6.498740824627662 + +chr1 91022289 91022299 ESRRB_MA0141.3 8.224668788431952 + +chr1 92538374 92538384 ESRRB_MA0141.3 6.104075365744785 - +chr1 92960945 92960955 ESRRB_MA0141.3 6.591744962211664 + +chr1 93708204 93708214 ESRRB_MA0141.3 9.939488034397119 - +chr1 93715837 93715847 ESRRB_MA0141.3 6.377243835300521 - +chr1 93908870 93908880 ESRRB_MA0141.3 5.467412717916748 + +chr1 94542346 94542356 ESRRB_MA0141.3 7.998142597736632 + +chr1 95095624 95095634 ESRRB_MA0141.3 5.860883705867093 - +chr1 96417167 96417177 ESRRB_MA0141.3 6.556800448722868 - +chr1 97159078 97159088 ESRRB_MA0141.3 5.161690465427080 + +chr1 97159344 97159354 ESRRB_MA0141.3 5.150759085792467 - diff --git a/demo/known_tfbs_chr1_hg38/ESX1_MA0644.1.bed b/demo/known_tfbs_chr1_hg38/ESX1_MA0644.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/ETS1_MA0098.3.bed b/demo/known_tfbs_chr1_hg38/ETS1_MA0098.3.bed new file mode 100644 index 0000000..6441b44 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/ETS1_MA0098.3.bed @@ -0,0 +1,356 @@ +chr1 827333 827342 ETS1_MA0098.3 8.145564766143163 - +chr1 827763 827772 ETS1_MA0098.3 8.204788360230348 - +chr1 1019769 1019778 ETS1_MA0098.3 8.505628213537845 - +chr1 1273866 1273875 ETS1_MA0098.3 9.736896073217265 - +chr1 1308121 1308130 ETS1_MA0098.3 8.643317600997854 + +chr1 1324683 1324692 ETS1_MA0098.3 10.047339339016771 - +chr1 1324699 1324708 ETS1_MA0098.3 8.242074416975100 + +chr1 1324879 1324888 ETS1_MA0098.3 7.649934527512022 + +chr1 1375196 1375205 ETS1_MA0098.3 11.053211423516316 - +chr1 1375329 1375338 ETS1_MA0098.3 8.681913987816602 - +chr1 1375548 1375557 ETS1_MA0098.3 8.349238489842199 + +chr1 1407329 1407338 ETS1_MA0098.3 8.207163778057993 - +chr1 1407413 1407422 ETS1_MA0098.3 7.769682626484064 + +chr1 1574645 1574654 ETS1_MA0098.3 8.602137864369782 + +chr1 1615414 1615423 ETS1_MA0098.3 11.053211423516316 - +chr1 1659001 1659010 ETS1_MA0098.3 9.210660444729893 - +chr1 1659088 1659097 ETS1_MA0098.3 9.210660444729893 - +chr1 1659294 1659303 ETS1_MA0098.3 7.595855708200161 - +chr1 1678004 1678013 ETS1_MA0098.3 7.857213923849377 - +chr1 1692648 1692657 ETS1_MA0098.3 10.693147976121633 + +chr1 1724327 1724336 ETS1_MA0098.3 9.210660444729893 - +chr1 1724411 1724420 ETS1_MA0098.3 9.210660444729893 - +chr1 1724605 1724614 ETS1_MA0098.3 7.595855708200161 - +chr1 1745923 1745932 ETS1_MA0098.3 10.693147976121633 + +chr1 2195103 2195112 ETS1_MA0098.3 8.242074416975100 - +chr1 2391754 2391763 ETS1_MA0098.3 8.602137864369782 + +chr1 2391760 2391769 ETS1_MA0098.3 8.491514005988030 + +chr1 2391836 2391845 ETS1_MA0098.3 8.851577453382712 + +chr1 2546599 2546608 ETS1_MA0098.3 7.832746082516012 + +chr1 2643273 2643282 ETS1_MA0098.3 8.145564766143163 - +chr1 3624789 3624798 ETS1_MA0098.3 9.210660444729893 + +chr1 3624816 3624825 ETS1_MA0098.3 8.602137864369782 - +chr1 3656426 3656435 ETS1_MA0098.3 7.534281647036160 - +chr1 3665560 3665569 ETS1_MA0098.3 7.991460803044770 + +chr1 3747379 3747388 ETS1_MA0098.3 7.625466686178656 + +chr1 6026127 6026136 ETS1_MA0098.3 7.894345094430841 - +chr1 6026328 6026337 ETS1_MA0098.3 8.204788360230348 - +chr1 6026666 6026675 ETS1_MA0098.3 7.894345094430841 - +chr1 7771219 7771228 ETS1_MA0098.3 9.619988779188981 - +chr1 7954290 7954299 ETS1_MA0098.3 9.619988779188981 + +chr1 7961928 7961937 ETS1_MA0098.3 8.602137864369782 - +chr1 9687400 9687409 ETS1_MA0098.3 10.059828350030484 - +chr1 9943385 9943394 ETS1_MA0098.3 8.851577453382712 - +chr1 9943404 9943413 ETS1_MA0098.3 9.619988779188981 - +chr1 10940294 10940303 ETS1_MA0098.3 8.217277371244061 - +chr1 11099667 11099676 ETS1_MA0098.3 7.608754790883950 - +chr1 11262781 11262790 ETS1_MA0098.3 9.971316596617667 - +chr1 11806036 11806045 ETS1_MA0098.3 9.041977435211285 + +chr1 12161986 12161995 ETS1_MA0098.3 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153728012 ETS1_MA0098.3 9.619988779188981 - +chr1 153775580 153775589 ETS1_MA0098.3 7.608754790883950 - +chr1 153775921 153775930 ETS1_MA0098.3 8.602137864369782 + +chr1 153849717 153849726 ETS1_MA0098.3 7.991460803044770 - +chr1 154558740 154558749 ETS1_MA0098.3 7.608754790883950 + +chr1 154974126 154974135 ETS1_MA0098.3 7.512245140052013 - +chr1 154974171 154974180 ETS1_MA0098.3 11.053211423516316 + +chr1 154974376 154974385 ETS1_MA0098.3 9.619988779188981 - +chr1 154983153 154983162 ETS1_MA0098.3 7.847100330663311 - +chr1 155262286 155262295 ETS1_MA0098.3 8.289925238524622 + +chr1 155308639 155308648 ETS1_MA0098.3 8.602137864369782 - +chr1 155934457 155934466 ETS1_MA0098.3 7.955919155594844 - +chr1 155946372 155946381 ETS1_MA0098.3 8.912196009250041 + +chr1 156194087 156194096 ETS1_MA0098.3 9.687275891622088 - +chr1 156660284 156660293 ETS1_MA0098.3 8.626605705703149 - +chr1 156728437 156728446 ETS1_MA0098.3 10.035360508697117 + +chr1 156728453 156728462 ETS1_MA0098.3 7.520243037471135 + +chr1 156740939 156740948 ETS1_MA0098.3 10.047339339016771 - +chr1 156741225 156741234 ETS1_MA0098.3 8.204788360230348 + +chr1 157138387 157138396 ETS1_MA0098.3 7.777437800402558 + +chr1 157562632 157562641 ETS1_MA0098.3 8.850596997335211 + diff --git a/demo/known_tfbs_chr1_hg38/ETV1_MA0761.1.bed b/demo/known_tfbs_chr1_hg38/ETV1_MA0761.1.bed new file mode 100644 index 0000000..6fb0a3b --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/ETV1_MA0761.1.bed @@ -0,0 +1,239 @@ +chr1 1019769 1019778 ETV1_MA0761.1 8.193802584278597 - +chr1 1273866 1273875 ETV1_MA0761.1 9.768063885127264 - +chr1 1308121 1308130 ETV1_MA0761.1 9.004138409718610 + +chr1 1324683 1324692 ETV1_MA0761.1 9.995152673481465 - +chr1 1324879 1324888 ETV1_MA0761.1 8.299562547866129 + +chr1 1375196 1375205 ETV1_MA0761.1 10.465156294204473 - +chr1 1375329 1375338 ETV1_MA0761.1 7.901015921985607 - +chr1 1375548 1375557 ETV1_MA0761.1 8.343164969617135 + +chr1 1407329 1407338 ETV1_MA0761.1 8.399522491804374 - +chr1 1407413 1407422 ETV1_MA0761.1 7.683866384428866 + +chr1 1505693 1505702 ETV1_MA0761.1 7.540102307717214 - +chr1 1574645 1574654 ETV1_MA0761.1 8.325182820478073 + +chr1 1615414 1615423 ETV1_MA0761.1 10.465156294204473 - +chr1 1659001 1659010 ETV1_MA0761.1 7.914375965308569 - +chr1 1659088 1659097 ETV1_MA0761.1 7.914375965308569 - +chr1 1692648 1692657 ETV1_MA0761.1 9.508404100441076 + +chr1 1724327 1724336 ETV1_MA0761.1 7.914375965308569 - +chr1 1724411 1724420 ETV1_MA0761.1 7.914375965308569 - +chr1 1745923 1745932 ETV1_MA0761.1 9.508404100441076 + +chr1 2391754 2391763 ETV1_MA0761.1 8.325182820478073 + +chr1 2391760 2391769 ETV1_MA0761.1 7.639188114278186 + +chr1 2391836 2391845 ETV1_MA0761.1 8.595940308041584 + +chr1 2585598 2585607 ETV1_MA0761.1 7.638589107764652 - +chr1 3624789 3624798 ETV1_MA0761.1 7.914375965308569 + +chr1 3624816 3624825 ETV1_MA0761.1 8.325182820478073 - +chr1 3665560 3665569 ETV1_MA0761.1 8.531225401277451 + +chr1 3747379 3747388 ETV1_MA0761.1 8.101326093115624 + +chr1 6554622 6554631 ETV1_MA0761.1 8.307046000641401 + +chr1 7771219 7771228 ETV1_MA0761.1 9.227995137081059 - +chr1 7954020 7954029 ETV1_MA0761.1 7.618828804391132 - +chr1 7954290 7954299 ETV1_MA0761.1 9.227995137081063 + +chr1 7961928 7961937 ETV1_MA0761.1 8.325182820478073 - +chr1 9687400 9687409 ETV1_MA0761.1 9.760580432351992 - +chr1 9943385 9943394 ETV1_MA0761.1 8.595940308041584 - +chr1 9943404 9943413 ETV1_MA0761.1 9.227995137081059 - +chr1 11099667 11099676 ETV1_MA0761.1 7.620606958625590 - +chr1 11262781 11262790 ETV1_MA0761.1 9.553082370591756 - +chr1 11806036 11806045 ETV1_MA0761.1 8.857768115749005 + +chr1 11980163 11980172 ETV1_MA0761.1 8.566587083245981 + +chr1 12449626 12449635 ETV1_MA0761.1 7.638589107764652 + +chr1 13731064 13731073 ETV1_MA0761.1 8.299562547866127 - +chr1 15616975 15616984 ETV1_MA0761.1 7.914375965308569 + +chr1 15976119 15976128 ETV1_MA0761.1 8.757991516358052 - +chr1 16440731 16440740 ETV1_MA0761.1 8.757991516358054 + +chr1 16499054 16499063 ETV1_MA0761.1 8.857768115749003 - +chr1 16514205 16514214 ETV1_MA0761.1 8.092064486105894 - +chr1 16896051 16896060 ETV1_MA0761.1 8.092064486105894 + +chr1 17054152 17054161 ETV1_MA0761.1 8.857768115749003 - +chr1 18926849 18926858 ETV1_MA0761.1 7.914375965308569 - +chr1 18956137 18956146 ETV1_MA0761.1 7.693127991438596 + +chr1 19477102 19477111 ETV1_MA0761.1 7.945694192136287 - +chr1 19596891 19596900 ETV1_MA0761.1 8.325505493751674 + +chr1 19799615 19799624 ETV1_MA0761.1 9.227995137081059 - +chr1 20508131 20508140 ETV1_MA0761.1 8.135588163115079 + +chr1 20508178 20508187 ETV1_MA0761.1 9.562343977601486 + +chr1 20508209 20508218 ETV1_MA0761.1 7.855501873028665 + +chr1 20661386 20661395 ETV1_MA0761.1 10.670876201730254 + +chr1 20661442 20661451 ETV1_MA0761.1 8.193802584278597 + +chr1 20661516 20661525 ETV1_MA0761.1 9.227995137081063 + +chr1 21334318 21334327 ETV1_MA0761.1 8.857768115749005 + +chr1 22025486 22025495 ETV1_MA0761.1 7.723798963555588 - +chr1 22025504 22025513 ETV1_MA0761.1 9.760580432351992 - +chr1 23691789 23691798 ETV1_MA0761.1 7.855179199755066 + +chr1 25022504 25022513 ETV1_MA0761.1 8.047386215955211 + +chr1 25232487 25232496 ETV1_MA0761.1 9.227995137081059 - +chr1 25232586 25232595 ETV1_MA0761.1 8.534134788995603 + +chr1 25239886 25239895 ETV1_MA0761.1 10.465156294204476 + +chr1 25819944 25819953 ETV1_MA0761.1 8.595940308041584 + +chr1 26169914 26169923 ETV1_MA0761.1 8.193802584278597 + +chr1 26788194 26788203 ETV1_MA0761.1 8.530902728003850 - +chr1 26890289 26890298 ETV1_MA0761.1 8.299562547866127 - +chr1 26921727 26921736 ETV1_MA0761.1 7.574150534240452 - +chr1 27773258 27773267 ETV1_MA0761.1 9.768063885127264 - +chr1 27914744 27914753 ETV1_MA0761.1 7.898847898964373 + +chr1 28088639 28088648 ETV1_MA0761.1 10.670876201730254 + +chr1 28329018 28329027 ETV1_MA0761.1 10.465156294204476 + +chr1 28643085 28643094 ETV1_MA0761.1 9.433715044606839 - +chr1 28648287 28648296 ETV1_MA0761.1 8.531225401277451 + +chr1 28668719 28668728 ETV1_MA0761.1 9.227995137081063 + +chr1 28669190 28669199 ETV1_MA0761.1 8.399522491804376 + +chr1 29182134 29182143 ETV1_MA0761.1 8.193802584278597 + +chr1 31645066 31645075 ETV1_MA0761.1 7.631322472392613 - +chr1 31645070 31645079 ETV1_MA0761.1 8.299562547866129 + +chr1 31788478 31788487 ETV1_MA0761.1 8.531225401277451 + +chr1 32013853 32013862 ETV1_MA0761.1 9.508404100441076 - +chr1 32179725 32179734 ETV1_MA0761.1 7.901015921985607 - +chr1 32222341 32222350 ETV1_MA0761.1 8.399522491804374 - +chr1 32222374 32222383 ETV1_MA0761.1 9.004138409718610 + +chr1 32627789 32627798 ETV1_MA0761.1 9.004138409718610 - +chr1 32650550 32650559 ETV1_MA0761.1 7.564499058443948 - +chr1 32650591 32650600 ETV1_MA0761.1 8.801660215567363 - +chr1 33127293 33127302 ETV1_MA0761.1 7.540102307717214 - +chr1 33127594 33127603 ETV1_MA0761.1 10.465156294204476 + +chr1 35192953 35192962 ETV1_MA0761.1 7.638589107764652 + +chr1 35557395 35557404 ETV1_MA0761.1 7.574150534240450 + +chr1 35931170 35931179 ETV1_MA0761.1 8.534134788995601 - +chr1 36088876 36088885 ETV1_MA0761.1 10.465156294204476 + +chr1 36374563 36374572 ETV1_MA0761.1 8.307046000641401 + +chr1 36385916 36385925 ETV1_MA0761.1 8.343164969617135 + +chr1 37514667 37514676 ETV1_MA0761.1 7.898847898964373 - +chr1 37554308 37554317 ETV1_MA0761.1 7.891364446189103 - +chr1 37595949 37595958 ETV1_MA0761.1 8.595940308041584 - +chr1 37807735 37807744 ETV1_MA0761.1 7.901015921985605 + +chr1 37808222 37808231 ETV1_MA0761.1 9.092340356878477 - +chr1 37859614 37859623 ETV1_MA0761.1 8.595940308041584 - +chr1 37990007 37990016 ETV1_MA0761.1 8.530902728003852 + +chr1 37990083 37990092 ETV1_MA0761.1 9.227995137081063 + +chr1 38012717 38012726 ETV1_MA0761.1 9.714124007966856 - +chr1 38475470 38475479 ETV1_MA0761.1 9.083078749868749 - +chr1 39026280 39026289 ETV1_MA0761.1 7.620606958625590 - +chr1 39026784 39026793 ETV1_MA0761.1 9.227995137081059 - +chr1 39576613 39576622 ETV1_MA0761.1 8.325182820478073 + +chr1 39738872 39738881 ETV1_MA0761.1 7.620606958625590 - +chr1 39789138 39789147 ETV1_MA0761.1 8.325505493751670 - +chr1 39799350 39799359 ETV1_MA0761.1 9.004138409718610 - +chr1 40040033 40040042 ETV1_MA0761.1 7.914375965308569 + +chr1 40040677 40040686 ETV1_MA0761.1 9.508404100441076 - +chr1 40040710 40040719 ETV1_MA0761.1 8.193802584278597 + +chr1 40040749 40040758 ETV1_MA0761.1 8.325182820478073 + +chr1 40258023 40258032 ETV1_MA0761.1 9.227995137081063 + +chr1 40373711 40373720 ETV1_MA0761.1 9.433715044606840 + +chr1 40709190 40709199 ETV1_MA0761.1 7.914375965308569 + +chr1 41920228 41920237 ETV1_MA0761.1 8.271242943317663 + +chr1 42456936 42456945 ETV1_MA0761.1 8.193802584278597 - +chr1 42682207 42682216 ETV1_MA0761.1 8.566587083245983 - +chr1 43172304 43172313 ETV1_MA0761.1 7.891364446189103 - +chr1 43172310 43172319 ETV1_MA0761.1 8.325182820478073 - +chr1 43172329 43172338 ETV1_MA0761.1 10.670876201730252 - +chr1 43389794 43389803 ETV1_MA0761.1 10.465156294204473 - +chr1 43389875 43389884 ETV1_MA0761.1 9.995152673481465 - +chr1 44213418 44213427 ETV1_MA0761.1 10.465156294204476 + +chr1 44213458 44213467 ETV1_MA0761.1 8.757991516358054 + +chr1 44820004 44820013 ETV1_MA0761.1 7.891364446189103 - +chr1 45303604 45303613 ETV1_MA0761.1 7.631322472392613 - +chr1 45340122 45340131 ETV1_MA0761.1 7.873161348894126 + +chr1 45583978 45583987 ETV1_MA0761.1 9.004138409718610 + +chr1 46303650 46303659 ETV1_MA0761.1 9.227995137081059 - +chr1 46616464 46616473 ETV1_MA0761.1 7.639188114278186 - +chr1 47314486 47314495 ETV1_MA0761.1 9.227995137081063 + +chr1 47334821 47334830 ETV1_MA0761.1 7.914375965308569 - +chr1 50724785 50724794 ETV1_MA0761.1 7.914375965308569 - +chr1 50959714 50959723 ETV1_MA0761.1 7.901015921985605 + +chr1 51491619 51491628 ETV1_MA0761.1 9.092340356878479 + +chr1 51729280 51729289 ETV1_MA0761.1 9.209858317244390 + +chr1 51879217 51879226 ETV1_MA0761.1 9.433715044606840 + +chr1 52033799 52033808 ETV1_MA0761.1 7.723798963555588 - +chr1 52033830 52033839 ETV1_MA0761.1 9.227995137081063 + +chr1 52404537 52404546 ETV1_MA0761.1 7.889586291954643 - +chr1 52404611 52404620 ETV1_MA0761.1 7.574150534240452 - +chr1 53196804 53196813 ETV1_MA0761.1 9.227995137081063 + +chr1 53220272 53220281 ETV1_MA0761.1 9.760580432351993 + +chr1 53238599 53238608 ETV1_MA0761.1 8.193802584278597 + +chr1 53889793 53889802 ETV1_MA0761.1 7.620606958625592 + +chr1 54715588 54715597 ETV1_MA0761.1 8.325182820478073 + +chr1 54764650 54764659 ETV1_MA0761.1 9.004138409718610 + +chr1 54764732 54764741 ETV1_MA0761.1 9.209858317244390 + +chr1 55214503 55214512 ETV1_MA0761.1 7.620606958625592 + +chr1 56565157 56565166 ETV1_MA0761.1 7.914375965308569 - +chr1 58784643 58784652 ETV1_MA0761.1 8.193802584278597 - +chr1 60281411 60281420 ETV1_MA0761.1 7.577382595232205 - +chr1 61725144 61725153 ETV1_MA0761.1 8.595940308041584 - +chr1 62784063 62784072 ETV1_MA0761.1 8.193802584278597 + +chr1 63124918 63124927 ETV1_MA0761.1 8.596330176828360 - +chr1 63523502 63523511 ETV1_MA0761.1 9.714124007966856 - +chr1 65067800 65067809 ETV1_MA0761.1 7.723798963555588 - +chr1 65254566 65254575 ETV1_MA0761.1 7.855179199755066 + +chr1 65420692 65420701 ETV1_MA0761.1 8.530902728003852 + +chr1 66402181 66402190 ETV1_MA0761.1 8.135588163115081 - +chr1 66925225 66925234 ETV1_MA0761.1 7.723798963555588 - +chr1 67430829 67430838 ETV1_MA0761.1 7.723798963555588 - +chr1 67686218 67686227 ETV1_MA0761.1 7.914375965308569 - +chr1 67736242 67736251 ETV1_MA0761.1 8.450398077095475 - +chr1 68347586 68347595 ETV1_MA0761.1 8.857768115749005 + +chr1 71080439 71080448 ETV1_MA0761.1 7.631322472392613 - +chr1 71081334 71081343 ETV1_MA0761.1 8.801660215567363 - +chr1 74198299 74198308 ETV1_MA0761.1 9.209858317244390 + +chr1 75786669 75786678 ETV1_MA0761.1 10.465156294204473 - +chr1 76294738 76294747 ETV1_MA0761.1 7.646072560539922 + +chr1 77683444 77683453 ETV1_MA0761.1 8.531225401277450 - +chr1 77759837 77759846 ETV1_MA0761.1 8.531225401277450 - +chr1 83485772 83485781 ETV1_MA0761.1 7.639188114278186 - +chr1 84077952 84077961 ETV1_MA0761.1 9.227995137081059 - +chr1 84078575 84078584 ETV1_MA0761.1 8.315921213468343 + +chr1 84479244 84479253 ETV1_MA0761.1 7.592132683379512 - +chr1 84506206 84506215 ETV1_MA0761.1 8.135588163115081 - +chr1 85259663 85259672 ETV1_MA0761.1 7.620606958625592 + +chr1 85259677 85259686 ETV1_MA0761.1 7.901015921985605 + +chr1 85259684 85259693 ETV1_MA0761.1 8.857768115749005 + +chr1 85276527 85276536 ETV1_MA0761.1 8.325182820478073 - +chr1 86395917 86395926 ETV1_MA0761.1 8.399522491804374 - +chr1 87052144 87052153 ETV1_MA0761.1 7.631322472392615 + +chr1 87335339 87335348 ETV1_MA0761.1 7.620606958625592 + +chr1 87449486 87449495 ETV1_MA0761.1 7.723798963555589 + +chr1 89429352 89429361 ETV1_MA0761.1 9.227995137081059 - +chr1 89525092 89525101 ETV1_MA0761.1 7.693517860225368 + +chr1 89843634 89843643 ETV1_MA0761.1 7.914375965308569 + +chr1 91572243 91572252 ETV1_MA0761.1 7.890863554997196 - +chr1 91803878 91803887 ETV1_MA0761.1 7.914375965308569 - +chr1 92486926 92486935 ETV1_MA0761.1 9.038400479718069 - +chr1 92961873 92961882 ETV1_MA0761.1 7.620606958625590 - +chr1 93015224 93015233 ETV1_MA0761.1 7.574150534240450 + +chr1 93345894 93345903 ETV1_MA0761.1 8.857768115749003 - +chr1 93346366 93346375 ETV1_MA0761.1 7.577382595232205 - +chr1 93879196 93879205 ETV1_MA0761.1 8.047386215955211 + +chr1 94037557 94037566 ETV1_MA0761.1 7.646072560539922 + +chr1 95072922 95072931 ETV1_MA0761.1 7.723798963555588 - +chr1 97138474 97138483 ETV1_MA0761.1 7.538324153482757 - +chr1 97921569 97921578 ETV1_MA0761.1 7.914375965308569 + +chr1 99766632 99766641 ETV1_MA0761.1 9.995152673481465 - +chr1 99850084 99850093 ETV1_MA0761.1 8.193802584278597 + +chr1 100132995 100133004 ETV1_MA0761.1 8.450398077095475 - +chr1 100133147 100133156 ETV1_MA0761.1 9.562343977601486 + +chr1 100353162 100353171 ETV1_MA0761.1 8.530902728003850 - +chr1 100894870 100894879 ETV1_MA0761.1 7.914375965308569 - +chr1 100896087 100896096 ETV1_MA0761.1 9.433715044606840 + +chr1 101179260 101179269 ETV1_MA0761.1 7.914375965308569 + +chr1 104593208 104593217 ETV1_MA0761.1 8.120095872834346 - +chr1 107057535 107057544 ETV1_MA0761.1 7.693127991438596 - +chr1 107935057 107935066 ETV1_MA0761.1 8.135588163115081 - +chr1 108200418 108200427 ETV1_MA0761.1 9.227995137081063 + +chr1 109076003 109076012 ETV1_MA0761.1 7.564499058443948 - +chr1 109076017 109076026 ETV1_MA0761.1 10.465156294204473 - +chr1 109100183 109100192 ETV1_MA0761.1 7.891364446189103 - +chr1 109213843 109213852 ETV1_MA0761.1 9.562343977601486 - +chr1 109283254 109283263 ETV1_MA0761.1 8.523419275228580 + +chr1 109426591 109426600 ETV1_MA0761.1 7.564499058443948 - +chr1 109548491 109548500 ETV1_MA0761.1 7.891364446189103 - +chr1 109548561 109548570 ETV1_MA0761.1 9.227995137081063 + +chr1 109548583 109548592 ETV1_MA0761.1 7.891754314975877 - +chr1 109656103 109656112 ETV1_MA0761.1 8.307046000641400 - +chr1 110963896 110963905 ETV1_MA0761.1 7.620929631899191 + +chr1 111507651 111507660 ETV1_MA0761.1 8.848506508739275 + +chr1 111755527 111755536 ETV1_MA0761.1 7.646072560539922 + +chr1 113812413 113812422 ETV1_MA0761.1 8.325182820478073 + +chr1 114716759 114716768 ETV1_MA0761.1 9.227995137081059 - +chr1 114780453 114780462 ETV1_MA0761.1 8.101326093115624 + +chr1 116737709 116737718 ETV1_MA0761.1 7.801239322594656 - +chr1 117654702 117654711 ETV1_MA0761.1 7.622060865382885 + +chr1 118960243 118960252 ETV1_MA0761.1 7.889586291954643 - diff --git a/demo/known_tfbs_chr1_hg38/ETV2_MA0762.1.bed b/demo/known_tfbs_chr1_hg38/ETV2_MA0762.1.bed new file mode 100644 index 0000000..c20edbd --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/ETV2_MA0762.1.bed @@ -0,0 +1,356 @@ +chr1 827511 827521 ETV2_MA0762.1 6.514505438250996 - +chr1 827763 827773 ETV2_MA0762.1 8.388673813497128 - +chr1 1273866 1273876 ETV2_MA0762.1 9.337149527275498 - +chr1 1324683 1324693 ETV2_MA0762.1 9.160760575967643 - +chr1 1324698 1324708 ETV2_MA0762.1 7.337704967927126 + +chr1 1375196 1375206 ETV2_MA0762.1 10.268976269134768 - +chr1 1375329 1375339 ETV2_MA0762.1 10.281117183935194 - +chr1 1375547 1375557 ETV2_MA0762.1 6.774783706364883 + +chr1 1615414 1615424 ETV2_MA0762.1 9.807977239769635 - +chr1 1659001 1659011 ETV2_MA0762.1 7.870033352531506 - +chr1 1659088 1659098 ETV2_MA0762.1 7.484689679473676 - +chr1 1659294 1659304 ETV2_MA0762.1 6.919164565341701 - +chr1 1678004 1678014 ETV2_MA0762.1 8.947875504046877 - +chr1 1692647 1692657 ETV2_MA0762.1 11.189729846991025 + +chr1 1724327 1724337 ETV2_MA0762.1 7.484689679473676 - +chr1 1724411 1724421 ETV2_MA0762.1 7.484689679473676 - +chr1 1724605 1724615 ETV2_MA0762.1 6.919164565341701 - +chr1 1745922 1745932 ETV2_MA0762.1 11.189729846991025 + +chr1 2195103 2195113 ETV2_MA0762.1 7.337704967927126 - +chr1 2391759 2391769 ETV2_MA0762.1 9.895922010817674 + +chr1 2391835 2391845 ETV2_MA0762.1 7.884966664501106 + +chr1 2546598 2546608 ETV2_MA0762.1 8.966598174747737 + +chr1 2546974 2546984 ETV2_MA0762.1 7.147767762477774 - +chr1 2556173 2556183 ETV2_MA0762.1 7.957829623639237 + +chr1 2556301 2556311 ETV2_MA0762.1 6.791972498871624 + +chr1 2585598 2585608 ETV2_MA0762.1 7.317215953081825 - +chr1 2643273 2643283 ETV2_MA0762.1 7.504551318658636 - +chr1 3624788 3624798 ETV2_MA0762.1 9.035890477299120 + +chr1 3656426 3656436 ETV2_MA0762.1 8.319959217893629 - +chr1 3665559 3665569 ETV2_MA0762.1 8.990642527889399 + +chr1 3677189 3677199 ETV2_MA0762.1 7.068890377536196 - +chr1 6026127 6026137 ETV2_MA0762.1 7.474860996344675 - +chr1 6026328 6026338 ETV2_MA0762.1 8.388673813497128 - +chr1 6026666 6026676 ETV2_MA0762.1 8.565062764804985 - +chr1 8397653 8397663 ETV2_MA0762.1 6.523681455952315 - +chr1 8397755 8397765 ETV2_MA0762.1 7.588108545449701 - +chr1 8427656 8427666 ETV2_MA0762.1 6.521915111807874 + +chr1 9687400 9687410 ETV2_MA0762.1 8.799208688661134 - +chr1 9943385 9943395 ETV2_MA0762.1 7.423967635135972 - +chr1 10940294 10940304 ETV2_MA0762.1 8.027121926190619 - +chr1 11262781 11262791 ETV2_MA0762.1 8.079151952435751 - +chr1 11806035 11806045 ETV2_MA0762.1 8.270161837618625 + +chr1 12161986 12161996 ETV2_MA0762.1 8.565062764804985 - +chr1 12435821 12435831 ETV2_MA0762.1 8.405443257329935 - +chr1 12449625 12449635 ETV2_MA0762.1 7.317215953081825 + +chr1 13749080 13749090 ETV2_MA0762.1 8.319381510945746 + +chr1 15526558 15526568 ETV2_MA0762.1 8.334892529863231 + +chr1 15616974 15616984 ETV2_MA0762.1 7.945688708838810 + +chr1 16499054 16499064 ETV2_MA0762.1 7.809162808253492 - +chr1 17054152 17054162 ETV2_MA0762.1 9.360363606078936 - +chr1 18926849 18926859 ETV2_MA0762.1 7.484689679473676 - +chr1 19596890 19596900 ETV2_MA0762.1 8.471424359975895 + +chr1 19799615 19799625 ETV2_MA0762.1 7.406997270478508 - +chr1 20508130 20508140 ETV2_MA0762.1 9.552467302781395 + +chr1 20508177 20508187 ETV2_MA0762.1 10.369132157187433 + +chr1 20508208 20508218 ETV2_MA0762.1 7.824207696173903 + +chr1 20661385 20661395 ETV2_MA0762.1 10.327195407683137 + +chr1 20661441 20661451 ETV2_MA0762.1 6.583797740802376 + +chr1 21334317 21334327 ETV2_MA0762.1 7.809162808253491 + +chr1 22025504 22025514 ETV2_MA0762.1 10.350409486486576 - +chr1 23540085 23540095 ETV2_MA0762.1 6.921721516907406 + +chr1 23959129 23959139 ETV2_MA0762.1 7.415397376922296 + +chr1 24391802 24391812 ETV2_MA0762.1 8.395614574200934 + +chr1 25239885 25239895 ETV2_MA0762.1 10.193320912827460 + +chr1 25819943 25819953 ETV2_MA0762.1 7.423967635135972 + +chr1 26542068 26542078 ETV2_MA0762.1 6.667354967593443 - +chr1 26744286 26744296 ETV2_MA0762.1 9.956644055155376 - +chr1 26921727 26921737 ETV2_MA0762.1 7.856923135840632 - +chr1 27773258 27773268 ETV2_MA0762.1 9.722493200333327 - +chr1 27914743 27914753 ETV2_MA0762.1 7.338483595699668 + +chr1 28088638 28088648 ETV2_MA0762.1 11.878396205508579 + +chr1 28199560 28199570 ETV2_MA0762.1 7.399205640037372 - +chr1 28200155 28200165 ETV2_MA0762.1 7.153524386178132 - +chr1 28329017 28329027 ETV2_MA0762.1 10.268976269134765 + +chr1 28643085 28643095 ETV2_MA0762.1 6.760358313624400 - +chr1 28643112 28643122 ETV2_MA0762.1 6.514505438250996 + +chr1 28648286 28648296 ETV2_MA0762.1 8.990642527889399 + +chr1 31788477 31788487 ETV2_MA0762.1 8.990642527889399 + +chr1 32013853 32013863 ETV2_MA0762.1 10.728730817625891 - +chr1 32179725 32179735 ETV2_MA0762.1 8.729916386109752 - +chr1 32222394 32222404 ETV2_MA0762.1 6.994819921649005 - +chr1 32650591 32650601 ETV2_MA0762.1 8.404184832414611 - +chr1 32981362 32981372 ETV2_MA0762.1 6.861264801423005 + +chr1 33127593 33127603 ETV2_MA0762.1 9.807977239769631 + +chr1 33461362 33461372 ETV2_MA0762.1 9.485816342661243 + +chr1 35557394 35557404 ETV2_MA0762.1 6.766721367380323 + +chr1 35557432 35557442 ETV2_MA0762.1 7.033723606164502 + +chr1 35769527 35769537 ETV2_MA0762.1 7.876396406287429 + +chr1 36088875 36088885 ETV2_MA0762.1 9.807977239769631 + +chr1 36385915 36385925 ETV2_MA0762.1 6.774783706364883 + +chr1 36397777 36397787 ETV2_MA0762.1 6.606632923255740 - +chr1 37514667 37514677 ETV2_MA0762.1 8.504340720467281 - +chr1 37554308 37554318 ETV2_MA0762.1 7.966399881852914 - +chr1 37595949 37595959 ETV2_MA0762.1 7.884966664501106 - +chr1 37807734 37807744 ETV2_MA0762.1 8.729916386109752 + +chr1 37808222 37808232 ETV2_MA0762.1 8.631713724925135 - +chr1 37859614 37859624 ETV2_MA0762.1 8.975168432961414 - +chr1 38012717 38012727 ETV2_MA0762.1 11.633292658597226 - +chr1 38475470 38475480 ETV2_MA0762.1 7.046591615575930 - +chr1 39026469 39026479 ETV2_MA0762.1 6.563865899413215 - +chr1 39026784 39026794 ETV2_MA0762.1 7.406997270478508 - +chr1 39789138 39789148 ETV2_MA0762.1 7.381222591515585 - +chr1 40040032 40040042 ETV2_MA0762.1 9.035890477299120 + +chr1 40040677 40040687 ETV2_MA0762.1 10.728730817625891 - +chr1 40373710 40373720 ETV2_MA0762.1 6.760358313624399 + +chr1 40386121 40386131 ETV2_MA0762.1 6.667354967593443 + +chr1 40709189 40709199 ETV2_MA0762.1 9.035890477299120 + +chr1 41242108 41242118 ETV2_MA0762.1 7.873893500498096 - +chr1 41662460 41662470 ETV2_MA0762.1 7.229179742485436 - +chr1 41920227 41920237 ETV2_MA0762.1 8.327750848334766 + +chr1 42456936 42456946 ETV2_MA0762.1 6.583797740802377 - +chr1 43172304 43172314 ETV2_MA0762.1 7.966399881852914 - +chr1 43172329 43172339 ETV2_MA0762.1 11.878396205508581 - +chr1 43389794 43389804 ETV2_MA0762.1 11.359178037595075 - +chr1 43389875 43389885 ETV2_MA0762.1 10.711961373793084 - +chr1 44213417 44213427 ETV2_MA0762.1 10.268976269134765 + +chr1 44800479 44800489 ETV2_MA0762.1 6.867627855178926 - +chr1 44820004 44820014 ETV2_MA0762.1 7.966399881852914 - +chr1 45340121 45340131 ETV2_MA0762.1 6.588566071928025 + +chr1 45394668 45394678 ETV2_MA0762.1 8.319381510945746 + +chr1 45687551 45687561 ETV2_MA0762.1 8.405443257329935 - +chr1 46043663 46043673 ETV2_MA0762.1 6.651880872665457 - +chr1 46303670 46303680 ETV2_MA0762.1 7.335952661883730 - +chr1 46340974 46340984 ETV2_MA0762.1 6.878202572340909 - +chr1 46616464 46616474 ETV2_MA0762.1 8.805720242357364 - +chr1 47314485 47314495 ETV2_MA0762.1 7.406997270478506 + +chr1 47334821 47334831 ETV2_MA0762.1 7.945688708838810 - +chr1 48730636 48730646 ETV2_MA0762.1 8.405443257329935 - +chr1 50724785 50724795 ETV2_MA0762.1 7.484689679473676 - +chr1 50959713 50959723 ETV2_MA0762.1 8.729916386109752 + +chr1 51491618 51491628 ETV2_MA0762.1 9.721915493385442 + +chr1 51518295 51518305 ETV2_MA0762.1 7.474860996344675 + +chr1 51878863 51878873 ETV2_MA0762.1 7.068890377536198 + +chr1 52033829 52033839 ETV2_MA0762.1 7.406997270478506 + +chr1 52366154 52366164 ETV2_MA0762.1 6.955642828431169 + +chr1 52404611 52404621 ETV2_MA0762.1 7.856923135840632 - +chr1 53220271 53220281 ETV2_MA0762.1 8.799208688661132 + +chr1 54801351 54801361 ETV2_MA0762.1 9.425094298323538 - +chr1 55288138 55288148 ETV2_MA0762.1 8.259237173555926 - +chr1 56296258 56296268 ETV2_MA0762.1 9.485816342661243 + +chr1 56526986 56526996 ETV2_MA0762.1 8.947875504046877 - +chr1 56565157 56565167 ETV2_MA0762.1 7.945688708838810 - +chr1 58816228 58816238 ETV2_MA0762.1 7.873893500498096 - +chr1 58857900 58857910 ETV2_MA0762.1 7.001650849974914 + +chr1 59266634 59266644 ETV2_MA0762.1 6.923450521750628 + +chr1 60281423 60281433 ETV2_MA0762.1 6.867627855178926 - +chr1 60391448 60391458 ETV2_MA0762.1 6.521915111807874 + +chr1 61725144 61725154 ETV2_MA0762.1 8.975168432961414 - +chr1 63124918 63124928 ETV2_MA0762.1 10.165762655059623 - +chr1 63523353 63523363 ETV2_MA0762.1 6.523681455952315 - +chr1 63523502 63523512 ETV2_MA0762.1 11.247948985539397 - +chr1 64171933 64171943 ETV2_MA0762.1 6.523681455952316 + +chr1 64864297 64864307 ETV2_MA0762.1 6.651880872665457 + +chr1 65215868 65215878 ETV2_MA0762.1 7.398627933089488 - +chr1 65420691 65420701 ETV2_MA0762.1 6.936169557984372 + +chr1 65688079 65688089 ETV2_MA0762.1 6.921721516907406 + +chr1 65959057 65959067 ETV2_MA0762.1 8.143570266585773 - +chr1 66336217 66336227 ETV2_MA0762.1 8.219225622893077 - +chr1 66402181 66402191 ETV2_MA0762.1 9.476811946474090 - +chr1 66984608 66984618 ETV2_MA0762.1 7.171099040578963 + +chr1 67686218 67686228 ETV2_MA0762.1 7.945688708838810 - +chr1 67736242 67736252 ETV2_MA0762.1 7.683486280166561 - +chr1 67736468 67736478 ETV2_MA0762.1 8.565062764804985 - +chr1 68347585 68347595 ETV2_MA0762.1 7.809162808253491 + +chr1 71081334 71081344 ETV2_MA0762.1 9.494386600874920 - +chr1 74674830 74674840 ETV2_MA0762.1 6.651880872665457 - +chr1 75784578 75784588 ETV2_MA0762.1 6.667354967593443 + +chr1 75786669 75786679 ETV2_MA0762.1 10.193320912827463 - +chr1 75909106 75909116 ETV2_MA0762.1 7.013861966979542 - +chr1 76294570 76294580 ETV2_MA0762.1 7.068890377536196 - +chr1 76294737 76294747 ETV2_MA0762.1 6.689299666928579 + +chr1 76871719 76871729 ETV2_MA0762.1 7.171099040578963 - +chr1 77682824 77682834 ETV2_MA0762.1 7.527386501111998 - +chr1 77683444 77683454 ETV2_MA0762.1 7.900440759429091 - +chr1 77759837 77759847 ETV2_MA0762.1 7.439441730063958 - +chr1 77978441 77978451 ETV2_MA0762.1 8.156536313586276 + +chr1 78651433 78651443 ETV2_MA0762.1 7.474860996344675 + +chr1 79052992 79053002 ETV2_MA0762.1 6.923450521750628 + +chr1 79461153 79461163 ETV2_MA0762.1 7.957829623639236 - +chr1 79777992 79778002 ETV2_MA0762.1 6.651880872665457 + +chr1 81506039 81506049 ETV2_MA0762.1 8.790786930387764 + +chr1 81548519 81548529 ETV2_MA0762.1 6.563865899413217 + +chr1 83406023 83406033 ETV2_MA0762.1 10.475862223068884 + +chr1 83485772 83485782 ETV2_MA0762.1 8.730064886050059 - +chr1 84479244 84479254 ETV2_MA0762.1 9.765956249960089 - +chr1 84506206 84506216 ETV2_MA0762.1 10.642669071241702 - +chr1 84996913 84996923 ETV2_MA0762.1 9.485816342661243 + +chr1 85259676 85259686 ETV2_MA0762.1 10.281117183935194 + +chr1 85259683 85259693 ETV2_MA0762.1 9.360363606078934 + +chr1 85276225 85276235 ETV2_MA0762.1 6.976354001445275 - +chr1 85276967 85276977 ETV2_MA0762.1 9.309427391353385 - +chr1 85298285 85298295 ETV2_MA0762.1 6.923450521750628 + +chr1 85708072 85708082 ETV2_MA0762.1 6.540651820609779 - +chr1 86396557 86396567 ETV2_MA0762.1 7.442668689664134 + +chr1 86419517 86419527 ETV2_MA0762.1 8.565062764804985 - +chr1 86617114 86617124 ETV2_MA0762.1 6.651880872665457 + +chr1 86704350 86704360 ETV2_MA0762.1 8.091852618435221 - +chr1 88180832 88180842 ETV2_MA0762.1 8.866442286695069 - +chr1 89198998 89199008 ETV2_MA0762.1 7.229179742485438 + +chr1 89363701 89363711 ETV2_MA0762.1 8.947875504046877 - +chr1 89429352 89429362 ETV2_MA0762.1 7.406997270478508 - +chr1 89525091 89525101 ETV2_MA0762.1 8.085515006191674 + +chr1 89843633 89843643 ETV2_MA0762.1 9.035890477299120 + +chr1 89855818 89855828 ETV2_MA0762.1 7.588108545449703 + +chr1 90127427 90127437 ETV2_MA0762.1 9.956644055155380 + +chr1 90509859 90509869 ETV2_MA0762.1 7.171099040578963 + +chr1 91022246 91022256 ETV2_MA0762.1 7.873893500498098 + +chr1 91501281 91501291 ETV2_MA0762.1 6.955642828431169 - +chr1 91803878 91803888 ETV2_MA0762.1 7.484689679473676 - +chr1 92486926 92486936 ETV2_MA0762.1 10.081514153823900 - +chr1 92537691 92537701 ETV2_MA0762.1 8.947875504046879 + +chr1 92538294 92538304 ETV2_MA0762.1 9.310005098301270 + +chr1 92584695 92584705 ETV2_MA0762.1 7.153524386178132 - +chr1 93015223 93015233 ETV2_MA0762.1 6.766721367380323 + +chr1 93345894 93345904 ETV2_MA0762.1 7.809162808253492 - +chr1 93615699 93615709 ETV2_MA0762.1 8.080880957278971 - +chr1 94037556 94037566 ETV2_MA0762.1 7.855156791696192 + +chr1 97138513 97138523 ETV2_MA0762.1 6.523681455952316 + +chr1 97461976 97461986 ETV2_MA0762.1 7.298472045036818 - +chr1 97921568 97921578 ETV2_MA0762.1 7.870033352531506 + +chr1 98688467 98688477 ETV2_MA0762.1 6.651880872665457 - +chr1 98871764 98871774 ETV2_MA0762.1 9.956644055155380 + +chr1 99218860 99218870 ETV2_MA0762.1 8.334892529863231 + +chr1 99758231 99758241 ETV2_MA0762.1 6.923450521750628 + +chr1 99766632 99766642 ETV2_MA0762.1 10.711961373793084 - +chr1 99969992 99970002 ETV2_MA0762.1 6.514505438250996 + +chr1 100047017 100047027 ETV2_MA0762.1 8.027121926190619 - +chr1 100132995 100133005 ETV2_MA0762.1 7.683486280166561 - +chr1 100133146 100133156 ETV2_MA0762.1 8.817931359361992 + +chr1 100353162 100353172 ETV2_MA0762.1 6.936169557984374 - +chr1 100523208 100523218 ETV2_MA0762.1 6.651880872665457 - +chr1 100894870 100894880 ETV2_MA0762.1 7.945688708838810 - +chr1 100896086 100896096 ETV2_MA0762.1 6.836013669931702 + +chr1 101179259 101179269 ETV2_MA0762.1 7.945688708838810 + +chr1 101438146 101438156 ETV2_MA0762.1 7.101806738027582 - +chr1 103784309 103784319 ETV2_MA0762.1 7.171099040578963 + +chr1 104593208 104593218 ETV2_MA0762.1 8.003907847387181 - +chr1 104987616 104987626 ETV2_MA0762.1 6.768180713120304 + +chr1 106727296 106727306 ETV2_MA0762.1 8.866442286695069 - +chr1 107451886 107451896 ETV2_MA0762.1 7.229179742485436 - +chr1 107935057 107935067 ETV2_MA0762.1 10.642669071241702 - +chr1 107964011 107964021 ETV2_MA0762.1 8.866442286695069 - +chr1 108200417 108200427 ETV2_MA0762.1 7.406997270478506 + +chr1 108559700 108559710 ETV2_MA0762.1 7.433664293476982 + +chr1 109076017 109076027 ETV2_MA0762.1 9.807977239769635 - +chr1 109213843 109213853 ETV2_MA0762.1 9.278930388727126 - +chr1 109548491 109548501 ETV2_MA0762.1 7.966399881852914 - +chr1 109548583 109548593 ETV2_MA0762.1 9.156994103951124 - +chr1 110631564 110631574 ETV2_MA0762.1 8.395614574200932 - +chr1 110872528 110872538 ETV2_MA0762.1 8.319959217893629 - +chr1 110963895 110963905 ETV2_MA0762.1 7.462655808867393 + +chr1 111216114 111216124 ETV2_MA0762.1 8.405443257329935 + +chr1 111507650 111507660 ETV2_MA0762.1 7.146038757634552 + +chr1 111507743 111507753 ETV2_MA0762.1 6.651880872665457 - +chr1 111508131 111508141 ETV2_MA0762.1 8.947875504046879 + +chr1 111755526 111755536 ETV2_MA0762.1 7.855156791696192 + +chr1 112716193 112716203 ETV2_MA0762.1 6.955642828431169 - +chr1 113191966 113191976 ETV2_MA0762.1 9.485816342661243 + +chr1 113759534 113759544 ETV2_MA0762.1 6.976354001445275 - +chr1 114581824 114581834 ETV2_MA0762.1 8.219225622893077 - +chr1 115641950 115641960 ETV2_MA0762.1 6.955642828431169 + +chr1 115976235 115976245 ETV2_MA0762.1 6.651880872665457 - +chr1 115976317 115976327 ETV2_MA0762.1 8.027121926190619 + +chr1 116737709 116737719 ETV2_MA0762.1 6.514677059765162 - +chr1 116827361 116827371 ETV2_MA0762.1 8.866442286695069 - +chr1 117664509 117664519 ETV2_MA0762.1 6.791972498871624 + +chr1 119266551 119266561 ETV2_MA0762.1 6.563865899413217 + +chr1 120176521 120176531 ETV2_MA0762.1 6.766721367380323 + +chr1 120850714 120850724 ETV2_MA0762.1 7.685708601092142 + +chr1 120914437 120914447 ETV2_MA0762.1 9.956644055155376 - +chr1 121097798 121097808 ETV2_MA0762.1 7.415397376922296 + +chr1 143215923 143215933 ETV2_MA0762.1 7.166490433178637 + +chr1 144412835 144412845 ETV2_MA0762.1 7.685708601092140 - +chr1 144546396 144546406 ETV2_MA0762.1 8.327951769159423 - +chr1 145281375 145281385 ETV2_MA0762.1 7.685708601092140 - +chr1 145927596 145927606 ETV2_MA0762.1 10.193320912827460 + +chr1 145932881 145932891 ETV2_MA0762.1 7.171099040578963 + +chr1 145957525 145957535 ETV2_MA0762.1 6.923450521750628 + +chr1 145964494 145964504 ETV2_MA0762.1 11.708948014904530 + +chr1 145979368 145979378 ETV2_MA0762.1 7.195258430961675 - +chr1 145979508 145979518 ETV2_MA0762.1 8.389251520445011 + +chr1 146037591 146037601 ETV2_MA0762.1 7.683486280166561 - +chr1 148522860 148522870 ETV2_MA0762.1 7.685708601092140 - +chr1 149927991 149928001 ETV2_MA0762.1 7.166490433178637 + +chr1 150010742 150010752 ETV2_MA0762.1 6.766721367380323 + +chr1 150293842 150293852 ETV2_MA0762.1 9.248705347015683 - +chr1 150293848 150293858 ETV2_MA0762.1 9.203275032419821 - +chr1 150293866 150293876 ETV2_MA0762.1 6.920223562150452 - +chr1 150321537 150321547 ETV2_MA0762.1 10.281117183935194 - +chr1 150567761 150567771 ETV2_MA0762.1 7.442668689664134 + +chr1 150579594 150579604 ETV2_MA0762.1 8.975168432961414 + +chr1 150974048 150974058 ETV2_MA0762.1 6.667354967593443 - +chr1 151059407 151059417 ETV2_MA0762.1 6.703762398970282 - +chr1 151070748 151070758 ETV2_MA0762.1 7.504551318658636 - +chr1 151281515 151281525 ETV2_MA0762.1 9.278930388727126 - +chr1 151399533 151399543 ETV2_MA0762.1 8.975168432961414 - +chr1 151475405 151475415 ETV2_MA0762.1 6.923450521750627 - +chr1 152036642 152036652 ETV2_MA0762.1 6.651880872665457 - +chr1 152048176 152048186 ETV2_MA0762.1 7.876396406287429 + +chr1 153791349 153791359 ETV2_MA0762.1 6.651880872665457 + +chr1 153849717 153849727 ETV2_MA0762.1 8.990642527889399 - +chr1 154272609 154272619 ETV2_MA0762.1 7.217552261956038 - +chr1 154936627 154936637 ETV2_MA0762.1 6.563865899413215 - +chr1 154974170 154974180 ETV2_MA0762.1 10.268976269134765 + +chr1 154983153 154983163 ETV2_MA0762.1 6.933567718111832 - +chr1 155262285 155262295 ETV2_MA0762.1 7.381222591515583 + +chr1 155323431 155323441 ETV2_MA0762.1 7.076253139000813 - +chr1 155609831 155609841 ETV2_MA0762.1 7.337905888751784 - +chr1 155946371 155946381 ETV2_MA0762.1 9.555108645212623 + +chr1 156194087 156194097 ETV2_MA0762.1 11.632714951649344 - +chr1 156728436 156728446 ETV2_MA0762.1 9.278930388727126 + +chr1 156740939 156740949 ETV2_MA0762.1 9.160760575967643 - +chr1 156741153 156741163 ETV2_MA0762.1 6.688721959980695 + +chr1 156741224 156741234 ETV2_MA0762.1 8.388673813497128 + +chr1 156741405 156741415 ETV2_MA0762.1 7.037076045782978 - +chr1 157512249 157512259 ETV2_MA0762.1 6.651880872665457 + +chr1 157562631 157562641 ETV2_MA0762.1 8.866442286695069 + +chr1 157653313 157653323 ETV2_MA0762.1 7.171099040578963 - +chr1 157833130 157833140 ETV2_MA0762.1 7.572634450521716 - +chr1 158149966 158149976 ETV2_MA0762.1 6.563865899413217 + +chr1 158831016 158831026 ETV2_MA0762.1 7.068890377536198 + +chr1 158952582 158952592 ETV2_MA0762.1 6.651880872665457 + +chr1 159009096 159009106 ETV2_MA0762.1 9.546104249025468 + +chr1 159012805 159012815 ETV2_MA0762.1 7.588108545449703 + +chr1 159068281 159068291 ETV2_MA0762.1 6.861264801423005 - +chr1 159839232 159839242 ETV2_MA0762.1 7.572634450521718 + +chr1 159923754 159923764 ETV2_MA0762.1 7.398627933089488 + +chr1 160031984 160031994 ETV2_MA0762.1 7.985122552553776 - +chr1 160032014 160032024 ETV2_MA0762.1 10.180961295882526 - +chr1 160343287 160343297 ETV2_MA0762.1 9.621759605332777 - +chr1 160522888 160522898 ETV2_MA0762.1 6.540651820609779 - +chr1 161013811 161013821 ETV2_MA0762.1 11.632714951649344 - +chr1 161045095 161045105 ETV2_MA0762.1 7.572634450521718 + +chr1 161045781 161045791 ETV2_MA0762.1 8.775910369552452 + +chr1 161046026 161046036 ETV2_MA0762.1 7.884966664501106 - +chr1 161133219 161133229 ETV2_MA0762.1 6.791972498871623 - +chr1 161186060 161186070 ETV2_MA0762.1 7.572634450521716 - +chr1 161186114 161186124 ETV2_MA0762.1 9.555108645212623 - +chr1 161389968 161389978 ETV2_MA0762.1 9.260207718026267 - +chr1 161399379 161399389 ETV2_MA0762.1 12.279931615451336 - +chr1 161531244 161531254 ETV2_MA0762.1 6.661741409160740 - +chr1 161531321 161531331 ETV2_MA0762.1 6.955642828431169 - +chr1 161707184 161707194 ETV2_MA0762.1 7.171099040578963 - +chr1 162497804 162497814 ETV2_MA0762.1 8.327750848334766 - +chr1 162497836 162497846 ETV2_MA0762.1 7.809162808253492 - +chr1 163361331 163361341 ETV2_MA0762.1 7.588108545449701 - +chr1 165698299 165698309 ETV2_MA0762.1 7.415397376922296 + +chr1 165768885 165768895 ETV2_MA0762.1 8.975168432961414 - +chr1 165768907 165768917 ETV2_MA0762.1 7.840977140006710 + +chr1 165828584 165828594 ETV2_MA0762.1 6.582588570114078 + +chr1 167220260 167220270 ETV2_MA0762.1 6.590332416072465 + +chr1 167455590 167455600 ETV2_MA0762.1 6.867627855178926 - +chr1 167936222 167936232 ETV2_MA0762.1 6.806905810841225 + +chr1 168467563 168467573 ETV2_MA0762.1 12.799149783364840 + +chr1 169367946 169367956 ETV2_MA0762.1 6.691066011073019 - +chr1 169367961 169367971 ETV2_MA0762.1 8.845202672103831 - diff --git a/demo/known_tfbs_chr1_hg38/ETV3_MA0763.1.bed b/demo/known_tfbs_chr1_hg38/ETV3_MA0763.1.bed new file mode 100644 index 0000000..e055f32 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/ETV3_MA0763.1.bed @@ -0,0 +1,239 @@ +chr1 827333 827342 ETV3_MA0763.1 8.050321753239723 - +chr1 1019769 1019778 ETV3_MA0763.1 9.368793217833987 - +chr1 1273866 1273875 ETV3_MA0763.1 8.895310123057794 - +chr1 1308121 1308130 ETV3_MA0763.1 9.251010297918231 + +chr1 1324683 1324692 ETV3_MA0763.1 10.071688479769152 - +chr1 1324879 1324888 ETV3_MA0763.1 8.384199873182432 + +chr1 1375196 1375205 ETV3_MA0763.1 11.443593570310888 - +chr1 1375548 1375557 ETV3_MA0763.1 8.979741473336965 + +chr1 1407306 1407315 ETV3_MA0763.1 7.457303853283416 - +chr1 1407329 1407338 ETV3_MA0763.1 8.731999135131465 - +chr1 1407413 1407422 ETV3_MA0763.1 7.575826151696291 + +chr1 1505098 1505107 ETV3_MA0763.1 7.390075915790991 + +chr1 1574645 1574654 ETV3_MA0763.1 7.799052878974495 + +chr1 1615414 1615423 ETV3_MA0763.1 11.443593570310888 - +chr1 1659001 1659010 ETV3_MA0763.1 8.308101347133194 - +chr1 1659088 1659097 ETV3_MA0763.1 8.308101347133194 - +chr1 1659173 1659182 ETV3_MA0763.1 7.777317882907946 - +chr1 1692648 1692657 ETV3_MA0763.1 10.125122105716624 + +chr1 1724327 1724336 ETV3_MA0763.1 8.308101347133194 - +chr1 1724411 1724420 ETV3_MA0763.1 8.308101347133194 - +chr1 1724497 1724506 ETV3_MA0763.1 7.777317882907946 - +chr1 1745923 1745932 ETV3_MA0763.1 10.125122105716624 + +chr1 2205509 2205518 ETV3_MA0763.1 7.457303853283416 - +chr1 2391754 2391763 ETV3_MA0763.1 7.799052878974495 + +chr1 2391760 2391769 ETV3_MA0763.1 7.373588352956978 + +chr1 2391836 2391845 ETV3_MA0763.1 8.692059817551243 + +chr1 2585598 2585607 ETV3_MA0763.1 8.112931048601165 - +chr1 2643273 2643282 ETV3_MA0763.1 8.050321753239723 - +chr1 3624789 3624798 ETV3_MA0763.1 8.308101347133196 + +chr1 3624816 3624825 ETV3_MA0763.1 7.799052878974496 - +chr1 3666296 3666305 ETV3_MA0763.1 7.540173762802451 - +chr1 3666722 3666731 ETV3_MA0763.1 7.435568857216865 + +chr1 3796535 3796544 ETV3_MA0763.1 7.777317882907946 - +chr1 6236130 6236139 ETV3_MA0763.1 7.385749127243238 - +chr1 7771219 7771228 ETV3_MA0763.1 9.710542243525067 - +chr1 7954290 7954299 ETV3_MA0763.1 9.710542243525067 + +chr1 7961236 7961245 ETV3_MA0763.1 7.385749127243238 - +chr1 7961928 7961937 ETV3_MA0763.1 7.799052878974496 - +chr1 8167586 8167595 ETV3_MA0763.1 8.394135543838813 + +chr1 9687400 9687409 ETV3_MA0763.1 10.576783145575089 - +chr1 9943385 9943394 ETV3_MA0763.1 8.692059817551243 - +chr1 9943404 9943413 ETV3_MA0763.1 9.710542243525067 - +chr1 10940294 10940303 ETV3_MA0763.1 7.441290922397395 - +chr1 11262781 11262790 ETV3_MA0763.1 10.327359904455935 - +chr1 11806036 11806045 ETV3_MA0763.1 8.665293781024515 + +chr1 11980163 11980172 ETV3_MA0763.1 8.085505616772295 + +chr1 12449626 12449635 ETV3_MA0763.1 8.112931048601165 + +chr1 13700187 13700196 ETV3_MA0763.1 7.777317882907946 - +chr1 13731064 13731073 ETV3_MA0763.1 8.384199873182432 - +chr1 15524238 15524247 ETV3_MA0763.1 7.457303853283416 - +chr1 15616975 15616984 ETV3_MA0763.1 8.308101347133196 + +chr1 15976119 15976128 ETV3_MA0763.1 8.338637152983331 - +chr1 16440731 16440740 ETV3_MA0763.1 8.338637152983331 + +chr1 16499054 16499063 ETV3_MA0763.1 8.665293781024516 - +chr1 16514205 16514214 ETV3_MA0763.1 8.134776632063280 - +chr1 16514401 16514410 ETV3_MA0763.1 9.510369209693765 - +chr1 16896051 16896060 ETV3_MA0763.1 8.134776632063279 + +chr1 17054152 17054161 ETV3_MA0763.1 8.665293781024516 - +chr1 18926849 18926858 ETV3_MA0763.1 8.308101347133194 - +chr1 19477102 19477111 ETV3_MA0763.1 7.549060115169564 - +chr1 19596891 19596900 ETV3_MA0763.1 7.973962054814360 + +chr1 19799615 19799624 ETV3_MA0763.1 9.710542243525067 - +chr1 20508178 20508187 ETV3_MA0763.1 9.532104205760314 + +chr1 20661386 20661395 ETV3_MA0763.1 10.806799487608366 + +chr1 20661442 20661451 ETV3_MA0763.1 9.368793217833987 + +chr1 20661516 20661525 ETV3_MA0763.1 9.710542243525067 + +chr1 21334318 21334327 ETV3_MA0763.1 8.665293781024515 + +chr1 22025486 22025495 ETV3_MA0763.1 7.996888127292252 - +chr1 22025504 22025513 ETV3_MA0763.1 10.576783145575089 - +chr1 23554912 23554921 ETV3_MA0763.1 7.385749127243238 - +chr1 25022504 25022513 ETV3_MA0763.1 7.932538833323967 + +chr1 25232487 25232496 ETV3_MA0763.1 9.710542243525067 - +chr1 25232586 25232595 ETV3_MA0763.1 7.879105207376496 + +chr1 25233081 25233090 ETV3_MA0763.1 8.394135543838813 + +chr1 25239886 25239895 ETV3_MA0763.1 11.443593570310888 + +chr1 25616375 25616384 ETV3_MA0763.1 7.457303853283416 - +chr1 25819925 25819934 ETV3_MA0763.1 7.457303853283416 - +chr1 25819944 25819953 ETV3_MA0763.1 8.692059817551243 + +chr1 26169914 26169923 ETV3_MA0763.1 9.368793217833987 + +chr1 26890289 26890298 ETV3_MA0763.1 8.384199873182432 - +chr1 27773258 27773267 ETV3_MA0763.1 8.895310123057794 - +chr1 28088639 28088648 ETV3_MA0763.1 10.806799487608366 + +chr1 28329018 28329027 ETV3_MA0763.1 11.443593570310888 + +chr1 28505991 28506000 ETV3_MA0763.1 8.501982793098188 - +chr1 28643085 28643094 ETV3_MA0763.1 9.073748160822545 - +chr1 28668719 28668728 ETV3_MA0763.1 9.710542243525067 + +chr1 28669190 28669199 ETV3_MA0763.1 8.731999135131465 + +chr1 29182134 29182143 ETV3_MA0763.1 9.368793217833987 + +chr1 31645070 31645079 ETV3_MA0763.1 8.384199873182432 + +chr1 32013853 32013862 ETV3_MA0763.1 10.125122105716624 - +chr1 32222341 32222350 ETV3_MA0763.1 8.731999135131465 - +chr1 32222374 32222383 ETV3_MA0763.1 9.251010297918231 + +chr1 32627789 32627798 ETV3_MA0763.1 9.251010297918231 - +chr1 32650591 32650600 ETV3_MA0763.1 8.055265734848721 - +chr1 32981363 32981372 ETV3_MA0763.1 7.441290922397396 + +chr1 33127594 33127603 ETV3_MA0763.1 11.443593570310888 + +chr1 33349525 33349534 ETV3_MA0763.1 7.789597003921603 - +chr1 35192953 35192962 ETV3_MA0763.1 8.112931048601165 + +chr1 35931170 35931179 ETV3_MA0763.1 7.879105207376496 - +chr1 36088876 36088885 ETV3_MA0763.1 11.443593570310888 + +chr1 36385916 36385925 ETV3_MA0763.1 8.979741473336965 + +chr1 37554308 37554317 ETV3_MA0763.1 7.825249392815444 - +chr1 37554314 37554323 ETV3_MA0763.1 7.457303853283416 - +chr1 37595949 37595958 ETV3_MA0763.1 8.692059817551243 - +chr1 37595982 37595991 ETV3_MA0763.1 7.441290922397395 - +chr1 37808192 37808201 ETV3_MA0763.1 7.457303853283416 - +chr1 37808222 37808231 ETV3_MA0763.1 8.160199115218580 - +chr1 37859614 37859623 ETV3_MA0763.1 8.692059817551243 - +chr1 37990083 37990092 ETV3_MA0763.1 9.710542243525067 + +chr1 38012717 38012726 ETV3_MA0763.1 9.488328023014102 - +chr1 38475470 38475479 ETV3_MA0763.1 8.955454813914200 - +chr1 38559381 38559390 ETV3_MA0763.1 8.178530548892450 + +chr1 39026784 39026793 ETV3_MA0763.1 9.710542243525067 - +chr1 39576613 39576622 ETV3_MA0763.1 7.799052878974495 + +chr1 39667172 39667181 ETV3_MA0763.1 7.619310931423041 - +chr1 39789138 39789147 ETV3_MA0763.1 7.973962054814361 - +chr1 39799350 39799359 ETV3_MA0763.1 9.251010297918231 - +chr1 40040033 40040042 ETV3_MA0763.1 8.308101347133196 + +chr1 40040677 40040686 ETV3_MA0763.1 10.125122105716624 - +chr1 40040710 40040719 ETV3_MA0763.1 9.368793217833987 + +chr1 40040749 40040758 ETV3_MA0763.1 7.799052878974495 + +chr1 40258023 40258032 ETV3_MA0763.1 9.710542243525067 + +chr1 40373711 40373720 ETV3_MA0763.1 9.073748160822545 + +chr1 40385859 40385868 ETV3_MA0763.1 7.789597003921603 + +chr1 40531885 40531894 ETV3_MA0763.1 7.868734172542192 - +chr1 40709190 40709199 ETV3_MA0763.1 8.308101347133196 + +chr1 41920228 41920237 ETV3_MA0763.1 8.392070778930803 + +chr1 42456936 42456945 ETV3_MA0763.1 9.368793217833987 - +chr1 42682207 42682216 ETV3_MA0763.1 8.085505616772295 - +chr1 43172304 43172313 ETV3_MA0763.1 7.825249392815444 - +chr1 43172310 43172319 ETV3_MA0763.1 7.799052878974496 - +chr1 43172329 43172338 ETV3_MA0763.1 10.806799487608366 - +chr1 43389794 43389803 ETV3_MA0763.1 11.443593570310888 - +chr1 43389875 43389884 ETV3_MA0763.1 10.071688479769152 - +chr1 44213418 44213427 ETV3_MA0763.1 11.443593570310888 + +chr1 44213458 44213467 ETV3_MA0763.1 8.338637152983331 + +chr1 44721952 44721961 ETV3_MA0763.1 8.205876129824812 - +chr1 44820004 44820013 ETV3_MA0763.1 7.825249392815444 - +chr1 45340122 45340131 ETV3_MA0763.1 7.607836382795229 + +chr1 45583978 45583987 ETV3_MA0763.1 9.251010297918231 + +chr1 45687259 45687268 ETV3_MA0763.1 7.868734172542192 + +chr1 46303650 46303659 ETV3_MA0763.1 9.710542243525067 - +chr1 46616464 46616473 ETV3_MA0763.1 7.373588352956979 - +chr1 47314486 47314495 ETV3_MA0763.1 9.710542243525067 + +chr1 47334821 47334830 ETV3_MA0763.1 8.308101347133194 - +chr1 50724785 50724794 ETV3_MA0763.1 8.308101347133194 - +chr1 51491619 51491628 ETV3_MA0763.1 8.160199115218578 + +chr1 51729280 51729289 ETV3_MA0763.1 8.614216215215709 + +chr1 51879217 51879226 ETV3_MA0763.1 9.073748160822545 + +chr1 52033799 52033808 ETV3_MA0763.1 7.996888127292252 - +chr1 52033830 52033839 ETV3_MA0763.1 9.710542243525067 + +chr1 53196804 53196813 ETV3_MA0763.1 9.710542243525067 + +chr1 53220272 53220281 ETV3_MA0763.1 10.576783145575089 + +chr1 53238599 53238608 ETV3_MA0763.1 9.368793217833987 + +chr1 54715588 54715597 ETV3_MA0763.1 7.799052878974495 + +chr1 54764650 54764659 ETV3_MA0763.1 9.251010297918231 + +chr1 54764732 54764741 ETV3_MA0763.1 8.614216215215709 + +chr1 55215411 55215420 ETV3_MA0763.1 7.457303853283415 + +chr1 56565157 56565166 ETV3_MA0763.1 8.308101347133194 - +chr1 58573566 58573575 ETV3_MA0763.1 8.019613345954880 - +chr1 58574010 58574019 ETV3_MA0763.1 7.363639506736256 - +chr1 58784643 58784652 ETV3_MA0763.1 9.368793217833987 - +chr1 61332540 61332549 ETV3_MA0763.1 7.619310931423041 - +chr1 61725144 61725153 ETV3_MA0763.1 8.692059817551243 - +chr1 62784063 62784072 ETV3_MA0763.1 9.368793217833987 + +chr1 63124918 63124927 ETV3_MA0763.1 9.008888439861671 - +chr1 63523502 63523511 ETV3_MA0763.1 9.488328023014102 - +chr1 65067800 65067809 ETV3_MA0763.1 7.996888127292252 - +chr1 65895236 65895245 ETV3_MA0763.1 8.098750514575469 - +chr1 66925225 66925234 ETV3_MA0763.1 7.996888127292252 - +chr1 66930324 66930333 ETV3_MA0763.1 8.252559551979036 - +chr1 67430433 67430442 ETV3_MA0763.1 8.252559551979036 - +chr1 67430829 67430838 ETV3_MA0763.1 7.996888127292252 - +chr1 67686218 67686227 ETV3_MA0763.1 8.308101347133194 - +chr1 68347586 68347595 ETV3_MA0763.1 8.665293781024515 + +chr1 71081334 71081343 ETV3_MA0763.1 8.055265734848721 - +chr1 72433803 72433812 ETV3_MA0763.1 7.524198747933072 - +chr1 74198299 74198308 ETV3_MA0763.1 8.614216215215709 + +chr1 75786669 75786678 ETV3_MA0763.1 11.443593570310888 - +chr1 75796810 75796819 ETV3_MA0763.1 8.098750514575469 + +chr1 76154879 76154888 ETV3_MA0763.1 8.501982793098188 - +chr1 77682360 77682369 ETV3_MA0763.1 7.789597003921603 - +chr1 77978442 77978451 ETV3_MA0763.1 7.661270008742700 + +chr1 83485772 83485781 ETV3_MA0763.1 7.373588352956979 - +chr1 84077952 84077961 ETV3_MA0763.1 9.710542243525067 - +chr1 84078575 84078584 ETV3_MA0763.1 8.594308577670114 + +chr1 85259684 85259693 ETV3_MA0763.1 8.665293781024515 + +chr1 85276527 85276536 ETV3_MA0763.1 7.799052878974496 - +chr1 86395917 86395926 ETV3_MA0763.1 8.731999135131465 - +chr1 87449486 87449495 ETV3_MA0763.1 7.996888127292252 + +chr1 88992847 88992856 ETV3_MA0763.1 8.252559551979035 + +chr1 88993164 88993173 ETV3_MA0763.1 7.757341461136290 + +chr1 89429352 89429361 ETV3_MA0763.1 9.710542243525067 - +chr1 89843634 89843643 ETV3_MA0763.1 8.308101347133196 + +chr1 91055019 91055028 ETV3_MA0763.1 8.656407428657403 + +chr1 91572243 91572252 ETV3_MA0763.1 7.350394608933081 - +chr1 91803878 91803887 ETV3_MA0763.1 8.308101347133194 - +chr1 92486926 92486935 ETV3_MA0763.1 8.753217015174888 - +chr1 93345850 93345859 ETV3_MA0763.1 8.501982793098188 + +chr1 93345894 93345903 ETV3_MA0763.1 8.665293781024516 - +chr1 93615699 93615708 ETV3_MA0763.1 7.661270008742701 - +chr1 93704008 93704017 ETV3_MA0763.1 7.417073132683727 - +chr1 93879196 93879205 ETV3_MA0763.1 7.932538833323967 + +chr1 94418467 94418476 ETV3_MA0763.1 8.178530548892450 + +chr1 95072922 95072931 ETV3_MA0763.1 7.996888127292252 - +chr1 97921569 97921578 ETV3_MA0763.1 8.308101347133196 + +chr1 99766632 99766641 ETV3_MA0763.1 10.071688479769152 - +chr1 99850084 99850093 ETV3_MA0763.1 9.368793217833987 + +chr1 100047017 100047026 ETV3_MA0763.1 7.441290922397395 - +chr1 100133147 100133156 ETV3_MA0763.1 9.532104205760314 + +chr1 100249826 100249835 ETV3_MA0763.1 8.050321753239723 + +chr1 100894870 100894879 ETV3_MA0763.1 8.308101347133194 - +chr1 100896087 100896096 ETV3_MA0763.1 9.073748160822545 + +chr1 101179260 101179269 ETV3_MA0763.1 8.308101347133196 + +chr1 104593208 104593217 ETV3_MA0763.1 7.671307264430672 - +chr1 108200418 108200427 ETV3_MA0763.1 9.710542243525067 + +chr1 109076017 109076026 ETV3_MA0763.1 11.443593570310888 - +chr1 109100183 109100192 ETV3_MA0763.1 7.825249392815444 - +chr1 109213843 109213852 ETV3_MA0763.1 9.532104205760316 - +chr1 109283254 109283263 ETV3_MA0763.1 8.843731818789268 + +chr1 109548491 109548500 ETV3_MA0763.1 7.825249392815444 - +chr1 109548561 109548570 ETV3_MA0763.1 9.710542243525067 + +chr1 109548583 109548592 ETV3_MA0763.1 8.142078015125872 - +chr1 111222047 111222056 ETV3_MA0763.1 8.656407428657403 + +chr1 111507651 111507660 ETV3_MA0763.1 9.460549479720136 + +chr1 113812413 113812422 ETV3_MA0763.1 7.799052878974495 + +chr1 113929224 113929233 ETV3_MA0763.1 8.178530548892450 + +chr1 114716759 114716768 ETV3_MA0763.1 9.710542243525067 - +chr1 114780694 114780703 ETV3_MA0763.1 8.050321753239723 - +chr1 115976318 115976327 ETV3_MA0763.1 7.441290922397396 + +chr1 116504558 116504567 ETV3_MA0763.1 7.615765469276514 - +chr1 116769922 116769931 ETV3_MA0763.1 7.441290922397395 - +chr1 120176546 120176555 ETV3_MA0763.1 7.390075915790991 - +chr1 120723950 120723959 ETV3_MA0763.1 8.338637152983331 - +chr1 120850902 120850911 ETV3_MA0763.1 8.134776632063280 - +chr1 144551862 144551871 ETV3_MA0763.1 8.134776632063280 - +chr1 144560749 144560758 ETV3_MA0763.1 8.134776632063280 - +chr1 145281188 145281197 ETV3_MA0763.1 8.134776632063279 + +chr1 145465700 145465709 ETV3_MA0763.1 8.134776632063280 - diff --git a/demo/known_tfbs_chr1_hg38/ETV4_MA0764.1.bed b/demo/known_tfbs_chr1_hg38/ETV4_MA0764.1.bed new file mode 100644 index 0000000..415d386 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/ETV4_MA0764.1.bed @@ -0,0 +1,239 @@ +chr1 1019769 1019778 ETV4_MA0764.1 8.113739220707330 - +chr1 1273866 1273875 ETV4_MA0764.1 9.557366990180078 - +chr1 1308121 1308130 ETV4_MA0764.1 8.915797035243475 + +chr1 1324683 1324692 ETV4_MA0764.1 9.810413198715381 - +chr1 1324879 1324888 ETV4_MA0764.1 8.314746344121064 + +chr1 1375196 1375205 ETV4_MA0764.1 10.152075338285965 - +chr1 1375329 1375338 ETV4_MA0764.1 7.683695682502267 - +chr1 1375548 1375557 ETV4_MA0764.1 8.454277800499874 + +chr1 1407329 1407338 ETV4_MA0764.1 8.547048344644317 - +chr1 1407413 1407422 ETV4_MA0764.1 7.658418209933331 + +chr1 1574645 1574654 ETV4_MA0764.1 8.045408500563976 + +chr1 1615414 1615423 ETV4_MA0764.1 10.152075338285965 - +chr1 1659001 1659010 ETV4_MA0764.1 7.867214029819096 - +chr1 1659088 1659097 ETV4_MA0764.1 7.867214029819096 - +chr1 1692648 1692657 ETV4_MA0764.1 9.312763845667551 + +chr1 1724327 1724336 ETV4_MA0764.1 7.867214029819096 - +chr1 1724411 1724420 ETV4_MA0764.1 7.867214029819096 - +chr1 1745923 1745932 ETV4_MA0764.1 9.312763845667551 + +chr1 2391754 2391763 ETV4_MA0764.1 8.045408500563976 + +chr1 2391760 2391769 ETV4_MA0764.1 7.619716910357956 + +chr1 2391836 2391845 ETV4_MA0764.1 8.459028402976369 + +chr1 2585598 2585607 ETV4_MA0764.1 7.853227109377461 - +chr1 3624789 3624798 ETV4_MA0764.1 7.867214029819096 + +chr1 3624816 3624825 ETV4_MA0764.1 8.045408500563974 - +chr1 3665560 3665569 ETV4_MA0764.1 8.713331821846911 + +chr1 3747379 3747388 ETV4_MA0764.1 7.887779563200605 + +chr1 6554622 6554631 ETV4_MA0764.1 8.321088687137591 + +chr1 7771219 7771228 ETV4_MA0764.1 9.073425972606845 - +chr1 7954020 7954029 ETV4_MA0764.1 7.678107431457923 - +chr1 7954290 7954299 ETV4_MA0764.1 9.073425972606849 + +chr1 7961928 7961937 ETV4_MA0764.1 8.045408500563974 - +chr1 9687400 9687409 ETV4_MA0764.1 9.551024647163551 - +chr1 9943385 9943394 ETV4_MA0764.1 8.459028402976369 - +chr1 9943404 9943413 ETV4_MA0764.1 9.073425972606845 - +chr1 11262781 11262790 ETV4_MA0764.1 9.351465145242926 - +chr1 11806036 11806045 ETV4_MA0764.1 8.523007175120682 + +chr1 11980163 11980172 ETV4_MA0764.1 8.467409346308733 + +chr1 12449626 12449635 ETV4_MA0764.1 7.853227109377461 + +chr1 13731064 13731073 ETV4_MA0764.1 8.314746344121062 - +chr1 15584681 15584690 ETV4_MA0764.1 7.634682456167790 - +chr1 15616975 15616984 ETV4_MA0764.1 7.867214029819096 + +chr1 15976119 15976128 ETV4_MA0764.1 8.731763833036263 - +chr1 16440731 16440740 ETV4_MA0764.1 8.731763833036265 + +chr1 16499054 16499063 ETV4_MA0764.1 8.523007175120680 - +chr1 16514205 16514214 ETV4_MA0764.1 8.115186842200437 - +chr1 16896051 16896060 ETV4_MA0764.1 8.115186842200437 + +chr1 17054152 17054161 ETV4_MA0764.1 8.523007175120680 - +chr1 18926849 18926858 ETV4_MA0764.1 7.867214029819096 - +chr1 19477102 19477111 ETV4_MA0764.1 7.722396982077643 - +chr1 19596891 19596900 ETV4_MA0764.1 8.280022697909924 + +chr1 19799615 19799624 ETV4_MA0764.1 9.073425972606845 - +chr1 20508131 20508140 ETV4_MA0764.1 7.943084234054097 + +chr1 20508178 20508187 ETV4_MA0764.1 9.124057866243096 + +chr1 20508209 20508218 ETV4_MA0764.1 7.938360558339341 + +chr1 20661386 20661395 ETV4_MA0764.1 10.585384462222951 + +chr1 20661442 20661451 ETV4_MA0764.1 8.113739220707334 + +chr1 20661516 20661525 ETV4_MA0764.1 9.073425972606849 + +chr1 21334318 21334327 ETV4_MA0764.1 8.523007175120682 + +chr1 22025486 22025495 ETV4_MA0764.1 7.772077081136747 - +chr1 22025504 22025513 ETV4_MA0764.1 9.551024647163551 - +chr1 23691789 23691798 ETV4_MA0764.1 7.703746360993392 + +chr1 25022504 25022513 ETV4_MA0764.1 8.076485542625061 + +chr1 25232487 25232496 ETV4_MA0764.1 9.073425972606845 - +chr1 25232586 25232595 ETV4_MA0764.1 8.574134895672893 + +chr1 25239886 25239895 ETV4_MA0764.1 10.152075338285965 + +chr1 25819944 25819953 ETV4_MA0764.1 8.459028402976369 + +chr1 26169914 26169923 ETV4_MA0764.1 8.113739220707334 + +chr1 26788194 26788203 ETV4_MA0764.1 8.478717624500961 - +chr1 26890289 26890298 ETV4_MA0764.1 8.314746344121062 - +chr1 26921727 26921736 ETV4_MA0764.1 7.639406131882547 - +chr1 27773258 27773267 ETV4_MA0764.1 9.557366990180078 - +chr1 27914744 27914753 ETV4_MA0764.1 7.864320054870484 + +chr1 28088639 28088648 ETV4_MA0764.1 10.585384462222951 + +chr1 28329018 28329027 ETV4_MA0764.1 10.152075338285965 + +chr1 28643085 28643094 ETV4_MA0764.1 9.506735096543832 - +chr1 28648287 28648296 ETV4_MA0764.1 8.713331821846911 + +chr1 28668719 28668728 ETV4_MA0764.1 9.073425972606849 + +chr1 28669190 28669199 ETV4_MA0764.1 8.547048344644319 + +chr1 29182134 29182143 ETV4_MA0764.1 8.113739220707334 + +chr1 31645070 31645079 ETV4_MA0764.1 8.314746344121064 + +chr1 31788478 31788487 ETV4_MA0764.1 8.713331821846911 + +chr1 32013853 32013862 ETV4_MA0764.1 9.312763845667551 - +chr1 32179725 32179734 ETV4_MA0764.1 7.683695682502267 - +chr1 32222341 32222350 ETV4_MA0764.1 8.547048344644317 - +chr1 32222374 32222383 ETV4_MA0764.1 8.915797035243475 + +chr1 32627789 32627798 ETV4_MA0764.1 8.915797035243475 - +chr1 32650550 32650559 ETV4_MA0764.1 7.813688161234236 - +chr1 32650591 32650600 ETV4_MA0764.1 8.892337526913353 - +chr1 33127594 33127603 ETV4_MA0764.1 10.152075338285965 + +chr1 35192953 35192962 ETV4_MA0764.1 7.853227109377461 + +chr1 35557395 35557404 ETV4_MA0764.1 7.639406131882549 + +chr1 35931170 35931179 ETV4_MA0764.1 8.574134895672891 - +chr1 36088847 36088856 ETV4_MA0764.1 7.808937558757741 + +chr1 36088876 36088885 ETV4_MA0764.1 10.152075338285965 + +chr1 36374563 36374572 ETV4_MA0764.1 8.321088687137591 + +chr1 36385916 36385925 ETV4_MA0764.1 8.454277800499874 + +chr1 37514667 37514676 ETV4_MA0764.1 7.864320054870484 - +chr1 37554308 37554317 ETV4_MA0764.1 7.857977711853954 - +chr1 37595949 37595958 ETV4_MA0764.1 8.459028402976369 - +chr1 37807735 37807744 ETV4_MA0764.1 7.683695682502267 + +chr1 37808222 37808231 ETV4_MA0764.1 8.782395726672510 - +chr1 37859614 37859623 ETV4_MA0764.1 8.459028402976369 - +chr1 37990007 37990016 ETV4_MA0764.1 8.478717624500963 + +chr1 37990083 37990092 ETV4_MA0764.1 9.073425972606849 + +chr1 38012717 38012726 ETV4_MA0764.1 9.746072969604535 - +chr1 38475470 38475479 ETV4_MA0764.1 9.009803005672342 - +chr1 39026784 39026793 ETV4_MA0764.1 9.073425972606845 - +chr1 39576613 39576622 ETV4_MA0764.1 8.045408500563976 + +chr1 39789138 39789147 ETV4_MA0764.1 8.280022697909924 - +chr1 39799350 39799359 ETV4_MA0764.1 8.915797035243475 - +chr1 40040033 40040042 ETV4_MA0764.1 7.867214029819096 + +chr1 40040677 40040686 ETV4_MA0764.1 9.312763845667551 - +chr1 40040710 40040719 ETV4_MA0764.1 8.113739220707334 + +chr1 40040749 40040758 ETV4_MA0764.1 8.045408500563976 + +chr1 40258023 40258032 ETV4_MA0764.1 9.073425972606849 + +chr1 40373711 40373720 ETV4_MA0764.1 9.506735096543833 + +chr1 40531628 40531637 ETV4_MA0764.1 7.656059223870864 - +chr1 40709190 40709199 ETV4_MA0764.1 7.867214029819096 + +chr1 41920228 41920237 ETV4_MA0764.1 8.234114479988435 + +chr1 42456936 42456945 ETV4_MA0764.1 8.113739220707330 - +chr1 42463246 42463255 ETV4_MA0764.1 7.634682456167791 + +chr1 42682207 42682216 ETV4_MA0764.1 8.467409346308731 - +chr1 43172304 43172313 ETV4_MA0764.1 7.857977711853954 - +chr1 43172310 43172319 ETV4_MA0764.1 8.045408500563974 - +chr1 43172329 43172338 ETV4_MA0764.1 10.585384462222949 - +chr1 43389794 43389803 ETV4_MA0764.1 10.152075338285965 - +chr1 43389875 43389884 ETV4_MA0764.1 9.810413198715381 - +chr1 44213418 44213427 ETV4_MA0764.1 10.152075338285965 + +chr1 44213458 44213467 ETV4_MA0764.1 8.731763833036265 + +chr1 44820004 44820013 ETV4_MA0764.1 7.857977711853954 - +chr1 45340122 45340131 ETV4_MA0764.1 8.112615660929292 + +chr1 45583683 45583692 ETV4_MA0764.1 7.634682456167791 + +chr1 45583978 45583987 ETV4_MA0764.1 8.915797035243475 + +chr1 46303650 46303659 ETV4_MA0764.1 9.073425972606845 - +chr1 46616464 46616473 ETV4_MA0764.1 7.619716910357956 - +chr1 47314486 47314495 ETV4_MA0764.1 9.073425972606849 + +chr1 47334821 47334830 ETV4_MA0764.1 7.867214029819096 - +chr1 50724785 50724794 ETV4_MA0764.1 7.867214029819096 - +chr1 50959714 50959723 ETV4_MA0764.1 7.683695682502267 + +chr1 51491619 51491628 ETV4_MA0764.1 8.782395726672512 + +chr1 51729280 51729289 ETV4_MA0764.1 9.349106159180462 + +chr1 51879217 51879226 ETV4_MA0764.1 9.506735096543833 + +chr1 52033799 52033808 ETV4_MA0764.1 7.772077081136747 - +chr1 52033830 52033839 ETV4_MA0764.1 9.073425972606849 + +chr1 52404537 52404546 ETV4_MA0764.1 8.091727333870317 - +chr1 52404611 52404620 ETV4_MA0764.1 7.639406131882547 - +chr1 53196804 53196813 ETV4_MA0764.1 9.073425972606849 + +chr1 53220272 53220281 ETV4_MA0764.1 9.551024647163553 + +chr1 53238599 53238608 ETV4_MA0764.1 8.113739220707334 + +chr1 54715588 54715597 ETV4_MA0764.1 8.045408500563976 + +chr1 54715848 54715857 ETV4_MA0764.1 7.634682456167791 + +chr1 54764650 54764659 ETV4_MA0764.1 8.915797035243475 + +chr1 54764732 54764741 ETV4_MA0764.1 9.349106159180462 + +chr1 56565157 56565166 ETV4_MA0764.1 7.867214029819096 - +chr1 58784643 58784652 ETV4_MA0764.1 8.113739220707330 - +chr1 60281411 60281420 ETV4_MA0764.1 7.734823403054476 - +chr1 61725144 61725153 ETV4_MA0764.1 8.459028402976369 - +chr1 62784063 62784072 ETV4_MA0764.1 8.113739220707334 + +chr1 63124918 63124927 ETV4_MA0764.1 8.512153652624512 - +chr1 63523502 63523511 ETV4_MA0764.1 9.746072969604535 - +chr1 65067800 65067809 ETV4_MA0764.1 7.772077081136747 - +chr1 65254566 65254575 ETV4_MA0764.1 7.703746360993392 + +chr1 65420692 65420701 ETV4_MA0764.1 8.478717624500963 + +chr1 66402181 66402190 ETV4_MA0764.1 7.943084234054097 - +chr1 66925225 66925234 ETV4_MA0764.1 7.772077081136747 - +chr1 67430829 67430838 ETV4_MA0764.1 7.772077081136747 - +chr1 67686218 67686227 ETV4_MA0764.1 7.867214029819096 - +chr1 67736242 67736251 ETV4_MA0764.1 8.352460124670765 - +chr1 68347586 68347595 ETV4_MA0764.1 8.523007175120682 + +chr1 71081334 71081343 ETV4_MA0764.1 8.892337526913353 - +chr1 74198299 74198308 ETV4_MA0764.1 9.349106159180462 + +chr1 75786669 75786678 ETV4_MA0764.1 10.152075338285965 - +chr1 76294738 76294747 ETV4_MA0764.1 7.859569452393991 + +chr1 77683444 77683453 ETV4_MA0764.1 8.713331821846909 - +chr1 77759837 77759846 ETV4_MA0764.1 8.713331821846909 - +chr1 77978442 77978451 ETV4_MA0764.1 7.614966307881462 + +chr1 83485772 83485781 ETV4_MA0764.1 7.619716910357956 - +chr1 84077952 84077961 ETV4_MA0764.1 9.073425972606845 - +chr1 84078575 84078584 ETV4_MA0764.1 8.272815779563810 + +chr1 84479244 84479253 ETV4_MA0764.1 8.048275431818448 - +chr1 84506206 84506215 ETV4_MA0764.1 7.943084234054097 - +chr1 85259677 85259686 ETV4_MA0764.1 7.683695682502267 + +chr1 85259684 85259693 ETV4_MA0764.1 8.523007175120682 + +chr1 85276527 85276536 ETV4_MA0764.1 8.045408500563974 - +chr1 86395917 86395926 ETV4_MA0764.1 8.547048344644317 - +chr1 87449486 87449495 ETV4_MA0764.1 7.772077081136749 + +chr1 89429352 89429361 ETV4_MA0764.1 9.073425972606845 - +chr1 89843634 89843643 ETV4_MA0764.1 7.867214029819096 + +chr1 91572243 91572252 ETV4_MA0764.1 7.692438082801162 - +chr1 91803878 91803887 ETV4_MA0764.1 7.867214029819096 - +chr1 92486926 92486935 ETV4_MA0764.1 8.971101706096967 - +chr1 93015224 93015233 ETV4_MA0764.1 7.639406131882549 + +chr1 93345894 93345903 ETV4_MA0764.1 8.523007175120680 - +chr1 93346366 93346375 ETV4_MA0764.1 7.734823403054476 - +chr1 93615699 93615708 ETV4_MA0764.1 7.614966307881462 - +chr1 93879196 93879205 ETV4_MA0764.1 8.076485542625061 + +chr1 94037557 94037566 ETV4_MA0764.1 7.859569452393991 + +chr1 95072922 95072931 ETV4_MA0764.1 7.772077081136747 - +chr1 97138474 97138483 ETV4_MA0764.1 7.551849931627727 - +chr1 97921569 97921578 ETV4_MA0764.1 7.867214029819096 + +chr1 99766632 99766641 ETV4_MA0764.1 9.810413198715381 - +chr1 99850084 99850093 ETV4_MA0764.1 8.113739220707334 + +chr1 100132995 100133004 ETV4_MA0764.1 8.352460124670765 - +chr1 100133147 100133156 ETV4_MA0764.1 9.124057866243096 + +chr1 100353162 100353171 ETV4_MA0764.1 8.478717624500961 - +chr1 100894870 100894879 ETV4_MA0764.1 7.867214029819096 - +chr1 100896087 100896096 ETV4_MA0764.1 9.506735096543833 + +chr1 101179260 101179269 ETV4_MA0764.1 7.867214029819096 + +chr1 104593208 104593217 ETV4_MA0764.1 8.300523153756082 - +chr1 107935057 107935066 ETV4_MA0764.1 7.943084234054097 - +chr1 108200418 108200427 ETV4_MA0764.1 9.073425972606849 + +chr1 109076003 109076012 ETV4_MA0764.1 7.813688161234236 - +chr1 109076017 109076026 ETV4_MA0764.1 10.152075338285965 - +chr1 109100183 109100192 ETV4_MA0764.1 7.857977711853954 - +chr1 109213843 109213852 ETV4_MA0764.1 9.124057866243092 - +chr1 109283254 109283263 ETV4_MA0764.1 8.472375281484435 + +chr1 109426591 109426600 ETV4_MA0764.1 7.813688161234236 - +chr1 109548491 109548500 ETV4_MA0764.1 7.857977711853954 - +chr1 109548561 109548570 ETV4_MA0764.1 9.073425972606849 + +chr1 109548583 109548592 ETV4_MA0764.1 7.911102961502100 - +chr1 109656103 109656112 ETV4_MA0764.1 8.321088687137589 - +chr1 110963896 110963905 ETV4_MA0764.1 7.678972006787512 + +chr1 111507651 111507660 ETV4_MA0764.1 8.750414454120515 + +chr1 111755527 111755536 ETV4_MA0764.1 7.859569452393991 + +chr1 113812413 113812422 ETV4_MA0764.1 8.045408500563976 + +chr1 114716759 114716768 ETV4_MA0764.1 9.073425972606845 - +chr1 114780453 114780462 ETV4_MA0764.1 7.887779563200605 + +chr1 116504558 116504567 ETV4_MA0764.1 7.746438151601279 - +chr1 116737709 116737718 ETV4_MA0764.1 7.892452340417848 - +chr1 117654702 117654711 ETV4_MA0764.1 7.773524702629854 + +chr1 118960243 118960252 ETV4_MA0764.1 8.091727333870317 - +chr1 120176522 120176531 ETV4_MA0764.1 7.639406131882549 + +chr1 120723950 120723959 ETV4_MA0764.1 8.731763833036263 - +chr1 120850902 120850911 ETV4_MA0764.1 8.115186842200437 - +chr1 120914095 120914104 ETV4_MA0764.1 8.478717624500961 - +chr1 144546396 144546405 ETV4_MA0764.1 8.117366263405785 - +chr1 144551862 144551871 ETV4_MA0764.1 8.115186842200437 - +chr1 144560749 144560758 ETV4_MA0764.1 8.115186842200437 - +chr1 145214985 145214994 ETV4_MA0764.1 8.478717624500963 + diff --git a/demo/known_tfbs_chr1_hg38/ETV5_MA0765.1.bed b/demo/known_tfbs_chr1_hg38/ETV5_MA0765.1.bed new file mode 100644 index 0000000..5b4199d --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/ETV5_MA0765.1.bed @@ -0,0 +1,239 @@ +chr1 1019769 1019778 ETV5_MA0765.1 7.963199831552871 - +chr1 1273866 1273875 ETV5_MA0765.1 8.952588467464096 - +chr1 1308121 1308130 ETV5_MA0765.1 8.527706416711293 + +chr1 1324683 1324692 ETV5_MA0765.1 9.258810125485356 - +chr1 1324879 1324888 ETV5_MA0765.1 8.094448437144397 + +chr1 1375196 1375205 ETV5_MA0765.1 9.596492920612459 - +chr1 1375548 1375557 ETV5_MA0765.1 8.132462831369729 + +chr1 1407329 1407338 ETV5_MA0765.1 7.895960755439271 - +chr1 1407413 1407422 ETV5_MA0765.1 8.202379536910536 + +chr1 1574645 1574654 ETV5_MA0765.1 8.278629474276192 + +chr1 1615414 1615423 ETV5_MA0765.1 9.596492920612459 - +chr1 1659272 1659281 ETV5_MA0765.1 7.517783060109632 - +chr1 1692648 1692657 ETV5_MA0765.1 8.428751446704027 + +chr1 1693369 1693378 ETV5_MA0765.1 7.799955199111808 + +chr1 1724583 1724592 ETV5_MA0765.1 7.517783060109632 - +chr1 1745923 1745932 ETV5_MA0765.1 8.428751446704027 + +chr1 2194764 2194773 ETV5_MA0765.1 7.799955199111808 + +chr1 2391754 2391763 ETV5_MA0765.1 8.278629474276192 + +chr1 2391836 2391845 ETV5_MA0765.1 8.541153268413311 + +chr1 2585598 2585607 ETV5_MA0765.1 7.699204851802832 - +chr1 2684245 2684254 ETV5_MA0765.1 7.602172947646315 - +chr1 3624816 3624825 ETV5_MA0765.1 8.278629474276192 - +chr1 3665560 3665569 ETV5_MA0765.1 7.903647806481201 + +chr1 3747379 3747388 ETV5_MA0765.1 7.951041039676528 + +chr1 6554622 6554631 ETV5_MA0765.1 7.883801963562927 + +chr1 7771219 7771228 ETV5_MA0765.1 8.855294851310955 - +chr1 7954020 7954029 ETV5_MA0765.1 7.872616666659817 - +chr1 7954290 7954299 ETV5_MA0765.1 8.855294851310957 + +chr1 7961928 7961937 ETV5_MA0765.1 8.278629474276192 - +chr1 8167586 8167595 ETV5_MA0765.1 7.637627641962997 + +chr1 9687400 9687409 ETV5_MA0765.1 9.163234941045562 - +chr1 9942974 9942983 ETV5_MA0765.1 7.612267308173753 - +chr1 9943385 9943394 ETV5_MA0765.1 8.541153268413311 - +chr1 9943404 9943413 ETV5_MA0765.1 8.855294851310955 - +chr1 11099667 11099676 ETV5_MA0765.1 7.845371494709296 - +chr1 11262781 11262790 ETV5_MA0765.1 9.257719189109686 - +chr1 11806036 11806045 ETV5_MA0765.1 8.586569564010800 + +chr1 11980163 11980172 ETV5_MA0765.1 7.678906216678979 + +chr1 12449626 12449635 ETV5_MA0765.1 7.699204851802833 + +chr1 13731064 13731073 ETV5_MA0765.1 8.094448437144395 - +chr1 15617941 15617950 ETV5_MA0765.1 7.612267308173753 - +chr1 15976119 15976128 ETV5_MA0765.1 8.517612056183852 - +chr1 16237139 16237148 ETV5_MA0765.1 7.799955199111807 - +chr1 16440731 16440740 ETV5_MA0765.1 8.517612056183854 + +chr1 16499054 16499063 ETV5_MA0765.1 8.586569564010800 - +chr1 16514205 16514214 ETV5_MA0765.1 8.188932685208517 - +chr1 16514401 16514410 ETV5_MA0765.1 7.976401373465770 - +chr1 16644521 16644530 ETV5_MA0765.1 7.626805096251444 - +chr1 16896051 16896060 ETV5_MA0765.1 8.188932685208517 + +chr1 17054152 17054161 ETV5_MA0765.1 8.586569564010800 - +chr1 18956137 18956146 ETV5_MA0765.1 7.964487891378547 + +chr1 19210316 19210325 ETV5_MA0765.1 7.799955199111808 + +chr1 19477102 19477111 ETV5_MA0765.1 8.247795832508025 - +chr1 19596891 19596900 ETV5_MA0765.1 7.970886882594802 + +chr1 19799615 19799624 ETV5_MA0765.1 8.855294851310955 - +chr1 20508131 20508140 ETV5_MA0765.1 7.514403274542160 + +chr1 20508178 20508187 ETV5_MA0765.1 9.019827543577696 + +chr1 20508209 20508218 ETV5_MA0765.1 7.633204087467699 + +chr1 20661386 20661395 ETV5_MA0765.1 9.529253844498861 + +chr1 20661442 20661451 ETV5_MA0765.1 7.963199831552873 + +chr1 20661516 20661525 ETV5_MA0765.1 8.855294851310957 + +chr1 21334318 21334327 ETV5_MA0765.1 8.586569564010800 + +chr1 22025486 22025495 ETV5_MA0765.1 7.625517036425769 - +chr1 22025504 22025513 ETV5_MA0765.1 9.163234941045562 - +chr1 23691789 23691798 ETV5_MA0765.1 7.940946679149089 + +chr1 23800929 23800938 ETV5_MA0765.1 7.799955199111808 + +chr1 25232487 25232496 ETV5_MA0765.1 8.855294851310955 - +chr1 25232586 25232595 ETV5_MA0765.1 8.190023621584190 + +chr1 25233081 25233090 ETV5_MA0765.1 7.637627641962997 + +chr1 25239886 25239895 ETV5_MA0765.1 9.596492920612461 + +chr1 25247441 25247450 ETV5_MA0765.1 7.612267308173753 + +chr1 25819944 25819953 ETV5_MA0765.1 8.541153268413311 + +chr1 26169914 26169923 ETV5_MA0765.1 7.963199831552873 + +chr1 26788194 26788203 ETV5_MA0765.1 8.211390398162592 - +chr1 26890289 26890298 ETV5_MA0765.1 8.094448437144395 - +chr1 27322260 27322269 ETV5_MA0765.1 7.799955199111808 + +chr1 27773258 27773267 ETV5_MA0765.1 8.952588467464096 - +chr1 27914744 27914753 ETV5_MA0765.1 7.897248815264946 + +chr1 28088639 28088648 ETV5_MA0765.1 9.529253844498861 + +chr1 28144923 28144932 ETV5_MA0765.1 7.558475083762172 - +chr1 28329018 28329027 ETV5_MA0765.1 9.596492920612461 + +chr1 28505991 28506000 ETV5_MA0765.1 7.529941851985975 - +chr1 28552903 28552912 ETV5_MA0765.1 7.517783060109632 + +chr1 28643085 28643094 ETV5_MA0765.1 8.788055775197355 - +chr1 28648287 28648296 ETV5_MA0765.1 7.903647806481201 + +chr1 28668719 28668728 ETV5_MA0765.1 8.855294851310957 + +chr1 28669190 28669199 ETV5_MA0765.1 7.895960755439273 + +chr1 28736724 28736733 ETV5_MA0765.1 7.531229911811651 - +chr1 29182134 29182143 ETV5_MA0765.1 7.963199831552873 + +chr1 31645066 31645075 ETV5_MA0765.1 7.613358244549425 - +chr1 31645070 31645079 ETV5_MA0765.1 8.094448437144397 + +chr1 31788478 31788487 ETV5_MA0765.1 7.903647806481201 + +chr1 32013853 32013862 ETV5_MA0765.1 8.428751446704027 - +chr1 32222341 32222350 ETV5_MA0765.1 7.895960755439271 - +chr1 32222374 32222383 ETV5_MA0765.1 8.527706416711293 + +chr1 32627789 32627798 ETV5_MA0765.1 8.527706416711291 - +chr1 32650550 32650559 ETV5_MA0765.1 7.732716122998206 - +chr1 32650591 32650600 ETV5_MA0765.1 8.473914192299711 - +chr1 32817679 32817688 ETV5_MA0765.1 7.517783060109632 - +chr1 33127594 33127603 ETV5_MA0765.1 9.596492920612461 + +chr1 33472397 33472406 ETV5_MA0765.1 7.517783060109632 + +chr1 33472656 33472665 ETV5_MA0765.1 7.799955199111807 - +chr1 35192953 35192962 ETV5_MA0765.1 7.699204851802833 + +chr1 35931170 35931179 ETV5_MA0765.1 8.190023621584189 - +chr1 36088876 36088885 ETV5_MA0765.1 9.596492920612461 + +chr1 36374563 36374572 ETV5_MA0765.1 7.883801963562927 + +chr1 36385916 36385925 ETV5_MA0765.1 8.132462831369729 + +chr1 37514667 37514676 ETV5_MA0765.1 7.897248815264946 - +chr1 37514836 37514845 ETV5_MA0765.1 7.517783060109632 - +chr1 37554308 37554317 ETV5_MA0765.1 8.107895288846414 - +chr1 37595949 37595958 ETV5_MA0765.1 8.541153268413311 - +chr1 37808222 37808231 ETV5_MA0765.1 8.682144748450593 - +chr1 37859614 37859623 ETV5_MA0765.1 8.541153268413311 - +chr1 37990007 37990016 ETV5_MA0765.1 8.211390398162592 + +chr1 37990083 37990092 ETV5_MA0765.1 8.855294851310957 + +chr1 38012717 38012726 ETV5_MA0765.1 8.361512370590427 - +chr1 38475470 38475479 ETV5_MA0765.1 8.920036393982583 - +chr1 39026280 39026289 ETV5_MA0765.1 7.845371494709296 - +chr1 39026784 39026793 ETV5_MA0765.1 8.855294851310955 - +chr1 39576613 39576622 ETV5_MA0765.1 8.278629474276192 + +chr1 39738872 39738881 ETV5_MA0765.1 7.845371494709296 - +chr1 39789138 39789147 ETV5_MA0765.1 7.970886882594802 - +chr1 39799350 39799359 ETV5_MA0765.1 8.527706416711291 - +chr1 40040677 40040686 ETV5_MA0765.1 8.428751446704027 - +chr1 40040710 40040719 ETV5_MA0765.1 7.963199831552873 + +chr1 40040749 40040758 ETV5_MA0765.1 8.278629474276192 + +chr1 40258023 40258032 ETV5_MA0765.1 8.855294851310957 + +chr1 40373711 40373720 ETV5_MA0765.1 8.788055775197357 + +chr1 41920228 41920237 ETV5_MA0765.1 7.687553377402523 + +chr1 42456936 42456945 ETV5_MA0765.1 7.963199831552871 - +chr1 42682207 42682216 ETV5_MA0765.1 7.678906216678979 - +chr1 43172304 43172313 ETV5_MA0765.1 8.107895288846414 - +chr1 43172310 43172319 ETV5_MA0765.1 8.278629474276192 - +chr1 43172329 43172338 ETV5_MA0765.1 9.529253844498859 - +chr1 43389794 43389803 ETV5_MA0765.1 9.596492920612459 - +chr1 43389875 43389884 ETV5_MA0765.1 9.258810125485356 - +chr1 44213418 44213427 ETV5_MA0765.1 9.596492920612461 + +chr1 44213458 44213467 ETV5_MA0765.1 8.517612056183854 + +chr1 44731473 44731482 ETV5_MA0765.1 7.531229911811651 + +chr1 44820004 44820013 ETV5_MA0765.1 8.107895288846414 - +chr1 45303604 45303613 ETV5_MA0765.1 7.613358244549425 - +chr1 45340122 45340131 ETV5_MA0765.1 7.794780036242626 + +chr1 45583978 45583987 ETV5_MA0765.1 8.527706416711293 + +chr1 46303650 46303659 ETV5_MA0765.1 8.855294851310955 - +chr1 47314486 47314495 ETV5_MA0765.1 8.855294851310957 + +chr1 51491619 51491628 ETV5_MA0765.1 8.682144748450593 + +chr1 51729280 51729289 ETV5_MA0765.1 8.460467340597694 + +chr1 51879217 51879226 ETV5_MA0765.1 8.788055775197357 + +chr1 52033799 52033808 ETV5_MA0765.1 7.625517036425769 - +chr1 52033830 52033839 ETV5_MA0765.1 8.855294851310957 + +chr1 52056479 52056488 ETV5_MA0765.1 7.799955199111807 - +chr1 52404537 52404546 ETV5_MA0765.1 8.135140460796936 - +chr1 52404588 52404597 ETV5_MA0765.1 7.531229911811651 + +chr1 53196804 53196813 ETV5_MA0765.1 8.855294851310957 + +chr1 53220272 53220281 ETV5_MA0765.1 9.163234941045564 + +chr1 53220802 53220811 ETV5_MA0765.1 7.531229911811651 + +chr1 53238599 53238608 ETV5_MA0765.1 7.963199831552873 + +chr1 53889793 53889802 ETV5_MA0765.1 7.845371494709296 + +chr1 54715588 54715597 ETV5_MA0765.1 8.278629474276192 + +chr1 54764650 54764659 ETV5_MA0765.1 8.527706416711293 + +chr1 54764732 54764741 ETV5_MA0765.1 8.460467340597694 + +chr1 55214503 55214512 ETV5_MA0765.1 7.845371494709296 + +chr1 58699749 58699758 ETV5_MA0765.1 7.602172947646315 - +chr1 58784643 58784652 ETV5_MA0765.1 7.963199831552871 - +chr1 61725144 61725153 ETV5_MA0765.1 8.541153268413311 - +chr1 61742479 61742488 ETV5_MA0765.1 7.799955199111807 - +chr1 62436327 62436336 ETV5_MA0765.1 7.517783060109632 + +chr1 62784063 62784072 ETV5_MA0765.1 7.963199831552873 + +chr1 63124918 63124927 ETV5_MA0765.1 8.089977715201252 - +chr1 63523502 63523511 ETV5_MA0765.1 8.361512370590427 - +chr1 65067800 65067809 ETV5_MA0765.1 7.625517036425769 - +chr1 65254566 65254575 ETV5_MA0765.1 7.940946679149089 + +chr1 65420692 65420701 ETV5_MA0765.1 8.211390398162592 + +chr1 66402181 66402190 ETV5_MA0765.1 7.514403274542159 - +chr1 66925225 66925234 ETV5_MA0765.1 7.625517036425769 - +chr1 66930324 66930333 ETV5_MA0765.1 7.624426100050099 - +chr1 67430433 67430442 ETV5_MA0765.1 7.624426100050099 - +chr1 67430829 67430838 ETV5_MA0765.1 7.625517036425769 - +chr1 68347586 68347595 ETV5_MA0765.1 8.586569564010800 + +chr1 71080439 71080448 ETV5_MA0765.1 7.613358244549425 - +chr1 71081334 71081343 ETV5_MA0765.1 8.473914192299711 - +chr1 71081370 71081379 ETV5_MA0765.1 7.799955199111808 + +chr1 74198299 74198308 ETV5_MA0765.1 8.460467340597694 + +chr1 75786669 75786678 ETV5_MA0765.1 9.596492920612459 - +chr1 76154879 76154888 ETV5_MA0765.1 7.529941851985975 - +chr1 77683444 77683453 ETV5_MA0765.1 7.903647806481201 - +chr1 77759837 77759846 ETV5_MA0765.1 7.903647806481201 - +chr1 84077952 84077961 ETV5_MA0765.1 8.855294851310955 - +chr1 84078575 84078584 ETV5_MA0765.1 8.516521119808182 + +chr1 84506206 84506215 ETV5_MA0765.1 7.514403274542159 - +chr1 85259663 85259672 ETV5_MA0765.1 7.845371494709296 + +chr1 85259684 85259693 ETV5_MA0765.1 8.586569564010800 + +chr1 85276225 85276234 ETV5_MA0765.1 7.531229911811651 - +chr1 85276527 85276536 ETV5_MA0765.1 8.278629474276192 - +chr1 86395917 86395926 ETV5_MA0765.1 7.895960755439271 - +chr1 87052144 87052153 ETV5_MA0765.1 7.613358244549425 + +chr1 87132081 87132090 ETV5_MA0765.1 7.602172947646315 + +chr1 87335339 87335348 ETV5_MA0765.1 7.845371494709296 + +chr1 87449486 87449495 ETV5_MA0765.1 7.625517036425770 + +chr1 88992847 88992856 ETV5_MA0765.1 7.624426100050099 + +chr1 88993164 88993173 ETV5_MA0765.1 7.570388565849396 + +chr1 89429352 89429361 ETV5_MA0765.1 8.855294851310955 - +chr1 89525092 89525101 ETV5_MA0765.1 7.513312338166489 + +chr1 92486926 92486935 ETV5_MA0765.1 8.091068651576924 - +chr1 92961873 92961882 ETV5_MA0765.1 7.845371494709296 - +chr1 93345850 93345859 ETV5_MA0765.1 7.529941851985977 + +chr1 93345894 93345903 ETV5_MA0765.1 8.586569564010800 - +chr1 95072922 95072931 ETV5_MA0765.1 7.625517036425769 - +chr1 99766632 99766641 ETV5_MA0765.1 9.258810125485356 - +chr1 99850084 99850093 ETV5_MA0765.1 7.963199831552873 + +chr1 100038356 100038365 ETV5_MA0765.1 7.632113151092027 - +chr1 100133133 100133142 ETV5_MA0765.1 7.602172947646315 + +chr1 100133147 100133156 ETV5_MA0765.1 9.019827543577696 + +chr1 100353162 100353171 ETV5_MA0765.1 8.211390398162592 - +chr1 100896087 100896096 ETV5_MA0765.1 8.788055775197357 + +chr1 107057535 107057544 ETV5_MA0765.1 7.964487891378547 - +chr1 107935057 107935066 ETV5_MA0765.1 7.514403274542159 - +chr1 108200418 108200427 ETV5_MA0765.1 8.855294851310957 + +chr1 109076003 109076012 ETV5_MA0765.1 7.732716122998206 - +chr1 109076017 109076026 ETV5_MA0765.1 9.596492920612459 - +chr1 109100183 109100192 ETV5_MA0765.1 8.107895288846414 - +chr1 109213843 109213852 ETV5_MA0765.1 9.019827543577696 - +chr1 109283254 109283263 ETV5_MA0765.1 8.422036871744060 + +chr1 109426591 109426600 ETV5_MA0765.1 7.732716122998206 - +chr1 109548491 109548500 ETV5_MA0765.1 8.107895288846414 - +chr1 109548561 109548570 ETV5_MA0765.1 8.855294851310957 + +chr1 109548583 109548592 ETV5_MA0765.1 7.656719735634356 - +chr1 109656103 109656112 ETV5_MA0765.1 7.883801963562927 - +chr1 110963896 110963905 ETV5_MA0765.1 7.537628903027906 + +chr1 111507651 111507660 ETV5_MA0765.1 8.824461209542790 + +chr1 113759534 113759543 ETV5_MA0765.1 7.531229911811651 - +chr1 113812413 113812422 ETV5_MA0765.1 8.278629474276192 + +chr1 113929520 113929529 ETV5_MA0765.1 7.799955199111807 - +chr1 114716759 114716768 ETV5_MA0765.1 8.855294851310955 - +chr1 114780453 114780462 ETV5_MA0765.1 7.951041039676528 + +chr1 116504558 116504567 ETV5_MA0765.1 7.557187023936498 - +chr1 117654702 117654711 ETV5_MA0765.1 7.851249890081415 + +chr1 117929618 117929627 ETV5_MA0765.1 7.531229911811651 - +chr1 117929708 117929717 ETV5_MA0765.1 7.517783060109632 - diff --git a/demo/known_tfbs_chr1_hg38/ETV6_MA0645.1.bed b/demo/known_tfbs_chr1_hg38/ETV6_MA0645.1.bed new file mode 100644 index 0000000..aeeae35 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/ETV6_MA0645.1.bed @@ -0,0 +1,707 @@ +chr1 827333 827342 ETV6_MA0645.1 7.981554522146009 - +chr1 827763 827772 ETV6_MA0645.1 7.965464761195636 - +chr1 1019769 1019778 ETV6_MA0645.1 10.145888600556001 - +chr1 1232053 1232062 ETV6_MA0645.1 8.310835552327166 + +chr1 1273866 1273875 ETV6_MA0645.1 7.977702183768348 - +chr1 1308121 1308130 ETV6_MA0645.1 8.958739855587817 + +chr1 1324683 1324692 ETV6_MA0645.1 9.429042332644325 - +chr1 1375196 1375205 ETV6_MA0645.1 10.506791107841845 - +chr1 1375505 1375514 ETV6_MA0645.1 7.863110777367919 + +chr1 1375548 1375557 ETV6_MA0645.1 8.561156271929699 + +chr1 1375571 1375580 ETV6_MA0645.1 8.310835552327166 + +chr1 1399543 1399552 ETV6_MA0645.1 7.616799676482501 + +chr1 1399663 1399672 ETV6_MA0645.1 7.570229764405581 + +chr1 1407306 1407315 ETV6_MA0645.1 8.064192157438477 - +chr1 1407329 1407338 ETV6_MA0645.1 9.698496119600025 - +chr1 1574612 1574621 ETV6_MA0645.1 8.647978539603102 - +chr1 1574645 1574654 ETV6_MA0645.1 7.727049170162543 + +chr1 1615414 1615423 ETV6_MA0645.1 10.506791107841845 - +chr1 1658786 1658795 ETV6_MA0645.1 8.647978539603102 + +chr1 1659001 1659010 ETV6_MA0645.1 9.043213536393155 - +chr1 1659088 1659097 ETV6_MA0645.1 9.043213536393155 - +chr1 1659173 1659182 ETV6_MA0645.1 8.116990948930084 - +chr1 1692648 1692657 ETV6_MA0645.1 8.342457029431854 + +chr1 1693369 1693378 ETV6_MA0645.1 10.392531995444690 + +chr1 1724130 1724139 ETV6_MA0645.1 8.647978539603102 + +chr1 1724327 1724336 ETV6_MA0645.1 9.043213536393155 - +chr1 1724411 1724420 ETV6_MA0645.1 9.043213536393155 - +chr1 1724497 1724506 ETV6_MA0645.1 8.116990948930084 - +chr1 1745923 1745932 ETV6_MA0645.1 8.342457029431854 + +chr1 1909239 1909248 ETV6_MA0645.1 7.615670799100013 + +chr1 2194764 2194773 ETV6_MA0645.1 10.392531995444690 + +chr1 2205509 2205518 ETV6_MA0645.1 8.064192157438477 - +chr1 2300615 2300624 ETV6_MA0645.1 8.928954423995998 - +chr1 2301080 2301089 ETV6_MA0645.1 7.487592129113113 - +chr1 2301274 2301283 ETV6_MA0645.1 8.313716293661793 - +chr1 2391754 2391763 ETV6_MA0645.1 7.727049170162543 + +chr1 2391760 2391769 ETV6_MA0645.1 8.926243411596479 + +chr1 2391836 2391845 ETV6_MA0645.1 11.090577490006471 + +chr1 2412665 2412674 ETV6_MA0645.1 8.310835552327166 + +chr1 2548926 2548935 ETV6_MA0645.1 8.154819119458368 + +chr1 2578402 2578411 ETV6_MA0645.1 8.154819119458368 - +chr1 2643273 2643282 ETV6_MA0645.1 7.981554522146009 - +chr1 3624789 3624798 ETV6_MA0645.1 9.043213536393157 + +chr1 3624816 3624825 ETV6_MA0645.1 7.727049170162543 - +chr1 3656852 3656861 ETV6_MA0645.1 7.462665840147790 - +chr1 3666722 3666731 ETV6_MA0645.1 8.454133936206020 + +chr1 3796514 3796523 ETV6_MA0645.1 7.616799676482501 - +chr1 3796535 3796544 ETV6_MA0645.1 8.116990948930084 - +chr1 3857650 3857659 ETV6_MA0645.1 8.188348636074416 + +chr1 6026328 6026337 ETV6_MA0645.1 7.965464761195636 - +chr1 6490427 6490436 ETV6_MA0645.1 7.952813786375947 - +chr1 6602631 6602640 ETV6_MA0645.1 10.282282501764650 + +chr1 7771219 7771228 ETV6_MA0645.1 9.808745613280065 - +chr1 7771627 7771636 ETV6_MA0645.1 8.928954423996000 + +chr1 7954290 7954299 ETV6_MA0645.1 9.808745613280065 + +chr1 7961928 7961937 ETV6_MA0645.1 7.727049170162543 - +chr1 8182965 8182974 ETV6_MA0645.1 9.626999918557781 + +chr1 8878606 8878615 ETV6_MA0645.1 7.545303475440257 + +chr1 9235060 9235069 ETV6_MA0645.1 9.179607437601804 + +chr1 9588650 9588659 ETV6_MA0645.1 8.310835552327166 - +chr1 9629807 9629816 ETV6_MA0645.1 7.952813786375947 - +chr1 9687400 9687409 ETV6_MA0645.1 8.269078231855525 - +chr1 9943385 9943394 ETV6_MA0645.1 11.090577490006471 - +chr1 9943404 9943413 ETV6_MA0645.1 9.808745613280065 - +chr1 9950682 9950691 ETV6_MA0645.1 7.612014561957706 + +chr1 10210936 10210945 ETV6_MA0645.1 8.647978539603102 - +chr1 10965335 10965344 ETV6_MA0645.1 8.313716293661793 + +chr1 11262769 11262778 ETV6_MA0645.1 8.059407042913682 - +chr1 11479263 11479272 ETV6_MA0645.1 8.491962106734304 - +chr1 11736270 11736279 ETV6_MA0645.1 8.928954423996000 + +chr1 13700187 13700196 ETV6_MA0645.1 8.116990948930084 - +chr1 13731071 13731080 ETV6_MA0645.1 8.928954423996000 + +chr1 15524238 15524247 ETV6_MA0645.1 8.064192157438477 - +chr1 15616975 15616984 ETV6_MA0645.1 9.043213536393157 + +chr1 15617755 15617764 ETV6_MA0645.1 9.651926207523106 - +chr1 15976119 15976128 ETV6_MA0645.1 8.730996838082545 - +chr1 16237139 16237148 ETV6_MA0645.1 10.392531995444690 - +chr1 16440731 16440740 ETV6_MA0645.1 8.730996838082545 + +chr1 16514401 16514410 ETV6_MA0645.1 8.815036443491865 - +chr1 16644521 16644530 ETV6_MA0645.1 7.931132271691427 - +chr1 16904859 16904868 ETV6_MA0645.1 7.615670799100013 - +chr1 16905182 16905191 ETV6_MA0645.1 9.314783220247170 + +chr1 17438610 17438619 ETV6_MA0645.1 8.928954423995998 - +chr1 18926849 18926858 ETV6_MA0645.1 9.043213536393155 - +chr1 18927890 18927899 ETV6_MA0645.1 7.851205648798479 - +chr1 18956137 18956146 ETV6_MA0645.1 9.008881046888947 + +chr1 19210316 19210325 ETV6_MA0645.1 10.392531995444690 + +chr1 19485511 19485520 ETV6_MA0645.1 7.952813786375947 - +chr1 19597065 19597074 ETV6_MA0645.1 8.345168041831377 + +chr1 19799615 19799624 ETV6_MA0645.1 9.808745613280065 - +chr1 20081189 20081198 ETV6_MA0645.1 7.545303475440257 - +chr1 20508178 20508187 ETV6_MA0645.1 8.425094664724323 + +chr1 20661386 20661395 ETV6_MA0645.1 10.059398626885869 + +chr1 20661442 20661451 ETV6_MA0645.1 10.145888600556001 + +chr1 20661516 20661525 ETV6_MA0645.1 9.808745613280065 + +chr1 21294532 21294541 ETV6_MA0645.1 9.626999918557781 + +chr1 21334550 21334559 ETV6_MA0645.1 7.460829794634918 + +chr1 21783282 21783291 ETV6_MA0645.1 7.545303475440257 + +chr1 22025486 22025495 ETV6_MA0645.1 9.068139825358481 - +chr1 22025504 22025513 ETV6_MA0645.1 8.269078231855525 - +chr1 22040030 22040039 ETV6_MA0645.1 9.626999918557779 - +chr1 22052626 22052635 ETV6_MA0645.1 10.729674982720626 - +chr1 23720779 23720788 ETV6_MA0645.1 9.626999918557781 + +chr1 23800929 23800938 ETV6_MA0645.1 10.392531995444690 + +chr1 23959195 23959204 ETV6_MA0645.1 8.345168041831377 + +chr1 23980395 23980404 ETV6_MA0645.1 7.615670799100013 - +chr1 24392040 24392049 ETV6_MA0645.1 7.545303475440257 + +chr1 24848505 24848514 ETV6_MA0645.1 7.545303475440257 + +chr1 24929643 24929652 ETV6_MA0645.1 8.549251143360260 + +chr1 25232487 25232496 ETV6_MA0645.1 9.808745613280065 - +chr1 25232509 25232518 ETV6_MA0645.1 7.863110777367919 - +chr1 25232586 25232595 ETV6_MA0645.1 7.880991080390297 + +chr1 25239886 25239895 ETV6_MA0645.1 10.506791107841845 + +chr1 25616375 25616384 ETV6_MA0645.1 8.064192157438477 - +chr1 25819925 25819934 ETV6_MA0645.1 8.064192157438477 - +chr1 25819944 25819953 ETV6_MA0645.1 11.090577490006471 + +chr1 26169914 26169923 ETV6_MA0645.1 10.145888600556001 + +chr1 26318024 26318033 ETV6_MA0645.1 7.545303475440257 - +chr1 26378307 26378316 ETV6_MA0645.1 8.928954423995998 - +chr1 26432322 26432331 ETV6_MA0645.1 8.078948666303752 + +chr1 26501083 26501092 ETV6_MA0645.1 10.729674982720626 + +chr1 26541924 26541933 ETV6_MA0645.1 8.481561943040024 + +chr1 27322200 27322209 ETV6_MA0645.1 8.310835552327166 + +chr1 27322206 27322215 ETV6_MA0645.1 7.733392268152134 + +chr1 27322260 27322269 ETV6_MA0645.1 10.392531995444690 + +chr1 27365638 27365647 ETV6_MA0645.1 7.952813786375947 - +chr1 27660142 27660151 ETV6_MA0645.1 7.495162284139129 + +chr1 27773258 27773267 ETV6_MA0645.1 7.977702183768348 - +chr1 27914744 27914753 ETV6_MA0645.1 8.561488565932970 + +chr1 28088639 28088648 ETV6_MA0645.1 10.059398626885869 + +chr1 28329018 28329027 ETV6_MA0645.1 10.506791107841845 + +chr1 28329034 28329043 ETV6_MA0645.1 7.851205648798481 + +chr1 28505991 28506000 ETV6_MA0645.1 7.908175724569679 - +chr1 28643085 28643094 ETV6_MA0645.1 9.361353132324089 - +chr1 28648912 28648921 ETV6_MA0645.1 8.059407042913682 + +chr1 28668719 28668728 ETV6_MA0645.1 9.808745613280065 + +chr1 28669190 28669199 ETV6_MA0645.1 9.698496119600025 + +chr1 28669579 28669588 ETV6_MA0645.1 8.313716293661793 + +chr1 29181921 29181930 ETV6_MA0645.1 7.615670799100013 - +chr1 29182134 29182143 ETV6_MA0645.1 10.145888600556001 + +chr1 30718752 30718761 ETV6_MA0645.1 7.604562253909790 - +chr1 31605980 31605989 ETV6_MA0645.1 8.234918548151336 + +chr1 31644996 31645005 ETV6_MA0645.1 7.863110777367919 + +chr1 32013853 32013862 ETV6_MA0645.1 8.342457029431856 - +chr1 32222341 32222350 ETV6_MA0645.1 9.698496119600025 - +chr1 32222374 32222383 ETV6_MA0645.1 8.958739855587817 + +chr1 32627789 32627798 ETV6_MA0645.1 8.958739855587817 - +chr1 32650550 32650559 ETV6_MA0645.1 9.945139514488714 - +chr1 32650591 32650600 ETV6_MA0645.1 10.643185009050494 - +chr1 32992095 32992104 ETV6_MA0645.1 7.897775560875400 - +chr1 33127594 33127603 ETV6_MA0645.1 10.506791107841845 + +chr1 33349344 33349353 ETV6_MA0645.1 7.570229764405581 + +chr1 33350396 33350405 ETV6_MA0645.1 8.078948666303752 + +chr1 33472656 33472665 ETV6_MA0645.1 10.392531995444690 - +chr1 33903015 33903024 ETV6_MA0645.1 9.626999918557781 + +chr1 35769518 35769527 ETV6_MA0645.1 7.570229764405581 - +chr1 35931170 35931179 ETV6_MA0645.1 7.880991080390297 - +chr1 36088876 36088885 ETV6_MA0645.1 10.506791107841845 + +chr1 36224018 36224027 ETV6_MA0645.1 7.733392268152134 + +chr1 36373952 36373961 ETV6_MA0645.1 9.626999918557781 + +chr1 36385916 36385925 ETV6_MA0645.1 8.561156271929699 + +chr1 37474506 37474515 ETV6_MA0645.1 8.647978539603102 - +chr1 37514667 37514676 ETV6_MA0645.1 8.561488565932970 - +chr1 37554308 37554317 ETV6_MA0645.1 8.852864614020149 - +chr1 37554314 37554323 ETV6_MA0645.1 8.064192157438477 - +chr1 37595715 37595724 ETV6_MA0645.1 8.481561943040022 - +chr1 37595949 37595958 ETV6_MA0645.1 11.090577490006471 - +chr1 37808192 37808201 ETV6_MA0645.1 8.064192157438477 - +chr1 37808200 37808209 ETV6_MA0645.1 8.928954423996000 + +chr1 37859614 37859623 ETV6_MA0645.1 11.090577490006471 - +chr1 37859620 37859629 ETV6_MA0645.1 7.545303475440257 - +chr1 37990083 37990092 ETV6_MA0645.1 9.808745613280065 + +chr1 38012678 38012687 ETV6_MA0645.1 9.179607437601804 + +chr1 38012717 38012726 ETV6_MA0645.1 7.895064548475880 - +chr1 39026784 39026793 ETV6_MA0645.1 9.808745613280065 - +chr1 39215590 39215599 ETV6_MA0645.1 8.234918548151335 - +chr1 39576613 39576622 ETV6_MA0645.1 7.727049170162543 + +chr1 39799250 39799259 ETV6_MA0645.1 9.626999918557779 - +chr1 39799350 39799359 ETV6_MA0645.1 8.958739855587817 - +chr1 39817471 39817480 ETV6_MA0645.1 7.495162284139129 + +chr1 39955429 39955438 ETV6_MA0645.1 8.228197917034699 + +chr1 39960800 39960809 ETV6_MA0645.1 7.604562253909790 - +chr1 40040033 40040042 ETV6_MA0645.1 9.043213536393157 + +chr1 40040677 40040686 ETV6_MA0645.1 8.342457029431856 - +chr1 40040710 40040719 ETV6_MA0645.1 10.145888600556001 + +chr1 40040749 40040758 ETV6_MA0645.1 7.727049170162543 + +chr1 40258023 40258032 ETV6_MA0645.1 9.808745613280065 + +chr1 40373711 40373720 ETV6_MA0645.1 9.361353132324089 + +chr1 40385838 40385847 ETV6_MA0645.1 8.549251143360259 - +chr1 40531628 40531637 ETV6_MA0645.1 9.095133756796466 - +chr1 40691770 40691779 ETV6_MA0645.1 7.615670799100013 - +chr1 40691958 40691967 ETV6_MA0645.1 9.266097411271934 - +chr1 40709190 40709199 ETV6_MA0645.1 9.043213536393157 + +chr1 41623202 41623211 ETV6_MA0645.1 8.345168041831377 + +chr1 41727575 41727584 ETV6_MA0645.1 9.626999918557781 + +chr1 41752179 41752188 ETV6_MA0645.1 9.626999918557781 + +chr1 41920228 41920237 ETV6_MA0645.1 7.644411534870074 + +chr1 42456568 42456577 ETV6_MA0645.1 8.228197917034699 + +chr1 42456936 42456945 ETV6_MA0645.1 10.145888600556001 - +chr1 42658429 42658438 ETV6_MA0645.1 7.616799676482501 - +chr1 42931427 42931436 ETV6_MA0645.1 8.313716293661793 - +chr1 42931995 42932004 ETV6_MA0645.1 8.234918548151336 + +chr1 43172304 43172313 ETV6_MA0645.1 8.852864614020149 - +chr1 43172310 43172319 ETV6_MA0645.1 7.727049170162543 - +chr1 43172329 43172338 ETV6_MA0645.1 10.059398626885869 - +chr1 43367999 43368008 ETV6_MA0645.1 8.078948666303750 - +chr1 43389794 43389803 ETV6_MA0645.1 10.506791107841845 - +chr1 43389875 43389884 ETV6_MA0645.1 9.429042332644325 - +chr1 43853531 43853540 ETV6_MA0645.1 9.179607437601803 - +chr1 44213418 44213427 ETV6_MA0645.1 10.506791107841845 + +chr1 44213458 44213467 ETV6_MA0645.1 8.730996838082545 + +chr1 44213529 44213538 ETV6_MA0645.1 9.542526237752442 + +chr1 44632202 44632211 ETV6_MA0645.1 8.481561943040024 + +chr1 44739777 44739786 ETV6_MA0645.1 8.310835552327166 + +chr1 44820004 44820013 ETV6_MA0645.1 8.852864614020149 - +chr1 45340122 45340131 ETV6_MA0645.1 7.483407496732180 + +chr1 45544056 45544065 ETV6_MA0645.1 8.928954423995998 - +chr1 45583978 45583987 ETV6_MA0645.1 8.958739855587817 + +chr1 45750544 45750553 ETV6_MA0645.1 8.549251143360260 + +chr1 46043663 46043672 ETV6_MA0645.1 9.626999918557779 - +chr1 46198457 46198466 ETV6_MA0645.1 8.310835552327166 - +chr1 46303650 46303659 ETV6_MA0645.1 9.808745613280065 - +chr1 46616464 46616473 ETV6_MA0645.1 8.926243411596479 - +chr1 46719109 46719118 ETV6_MA0645.1 8.313716293661793 - +chr1 47314039 47314048 ETV6_MA0645.1 9.651926207523106 - +chr1 47314486 47314495 ETV6_MA0645.1 9.808745613280065 + +chr1 47334821 47334830 ETV6_MA0645.1 9.043213536393155 - +chr1 50724785 50724794 ETV6_MA0645.1 9.043213536393155 - +chr1 50977555 50977564 ETV6_MA0645.1 7.487592129113113 - +chr1 51518849 51518858 ETV6_MA0645.1 7.604562253909790 - +chr1 51570437 51570446 ETV6_MA0645.1 8.481561943040022 - +chr1 51729280 51729289 ETV6_MA0645.1 8.511347374631841 + +chr1 51879217 51879226 ETV6_MA0645.1 9.361353132324089 + +chr1 52033799 52033808 ETV6_MA0645.1 9.068139825358481 - +chr1 52033830 52033839 ETV6_MA0645.1 9.808745613280065 + +chr1 52056479 52056488 ETV6_MA0645.1 10.392531995444690 - +chr1 52637491 52637500 ETV6_MA0645.1 7.495162284139129 + +chr1 53196804 53196813 ETV6_MA0645.1 9.808745613280065 + +chr1 53220272 53220281 ETV6_MA0645.1 8.269078231855525 + +chr1 53238535 53238544 ETV6_MA0645.1 10.729674982720626 + +chr1 53238599 53238608 ETV6_MA0645.1 10.145888600556001 + +chr1 53838598 53838607 ETV6_MA0645.1 9.179607437601804 + +chr1 54053289 54053298 ETV6_MA0645.1 7.863443071371191 - +chr1 54200356 54200365 ETV6_MA0645.1 8.491962106734304 + +chr1 54715588 54715597 ETV6_MA0645.1 7.727049170162543 + +chr1 54764650 54764659 ETV6_MA0645.1 8.958739855587817 + +chr1 54764732 54764741 ETV6_MA0645.1 8.511347374631841 + +chr1 55215411 55215420 ETV6_MA0645.1 8.064192157438477 + +chr1 56516587 56516596 ETV6_MA0645.1 8.078948666303750 - +chr1 56525654 56525663 ETV6_MA0645.1 8.345168041831375 - +chr1 56525725 56525734 ETV6_MA0645.1 8.928954423995998 - +chr1 56565157 56565166 ETV6_MA0645.1 9.043213536393155 - +chr1 58546762 58546771 ETV6_MA0645.1 8.345168041831375 - +chr1 58573914 58573923 ETV6_MA0645.1 7.863110777367919 - +chr1 58784643 58784652 ETV6_MA0645.1 10.145888600556001 - +chr1 58815378 58815387 ETV6_MA0645.1 8.154819119458368 - +chr1 58816468 58816477 ETV6_MA0645.1 8.345168041831375 - +chr1 58968491 58968500 ETV6_MA0645.1 9.179607437601803 - +chr1 59020419 59020428 ETV6_MA0645.1 7.866323812705818 + +chr1 61724727 61724736 ETV6_MA0645.1 7.545303475440257 + +chr1 61725144 61725153 ETV6_MA0645.1 11.090577490006471 - +chr1 61725150 61725159 ETV6_MA0645.1 8.310835552327166 - +chr1 61742479 61742488 ETV6_MA0645.1 10.392531995444690 - +chr1 62784063 62784072 ETV6_MA0645.1 10.145888600556001 + +chr1 62800929 62800938 ETV6_MA0645.1 9.626999918557781 + +chr1 63523502 63523511 ETV6_MA0645.1 7.895064548475880 - +chr1 63593553 63593562 ETV6_MA0645.1 7.460829794634918 + +chr1 63593822 63593831 ETV6_MA0645.1 8.647978539603102 - +chr1 63893251 63893260 ETV6_MA0645.1 7.897775560875400 - +chr1 64864254 64864263 ETV6_MA0645.1 8.345168041831375 - +chr1 64864298 64864307 ETV6_MA0645.1 9.626999918557781 + +chr1 64957139 64957148 ETV6_MA0645.1 8.928954423996000 + +chr1 64966333 64966342 ETV6_MA0645.1 8.200253764643854 - +chr1 65067800 65067809 ETV6_MA0645.1 9.068139825358481 - +chr1 65068058 65068067 ETV6_MA0645.1 7.570229764405581 + +chr1 65459527 65459536 ETV6_MA0645.1 7.495162284139129 + +chr1 65812216 65812225 ETV6_MA0645.1 7.462665840147790 - +chr1 66247517 66247526 ETV6_MA0645.1 7.497003500112966 - +chr1 66336507 66336516 ETV6_MA0645.1 7.615670799100013 - +chr1 66925225 66925234 ETV6_MA0645.1 9.068139825358481 - +chr1 66984609 66984618 ETV6_MA0645.1 9.179607437601804 + +chr1 67054002 67054011 ETV6_MA0645.1 9.314783220247170 - +chr1 67339768 67339777 ETV6_MA0645.1 8.549251143360260 + +chr1 67430829 67430838 ETV6_MA0645.1 9.068139825358481 - +chr1 67686049 67686058 ETV6_MA0645.1 8.928954423996000 + +chr1 67686218 67686227 ETV6_MA0645.1 9.043213536393155 - +chr1 67686807 67686816 ETV6_MA0645.1 7.497003500112966 + +chr1 68347627 68347636 ETV6_MA0645.1 9.179607437601804 + +chr1 71081334 71081343 ETV6_MA0645.1 10.643185009050494 - +chr1 71081370 71081379 ETV6_MA0645.1 10.392531995444690 + +chr1 71967839 71967848 ETV6_MA0645.1 8.313716293661793 + +chr1 74198299 74198308 ETV6_MA0645.1 8.511347374631841 + +chr1 74198441 74198450 ETV6_MA0645.1 7.729929911497170 - +chr1 74652892 74652901 ETV6_MA0645.1 8.682311029107311 - +chr1 74674830 74674839 ETV6_MA0645.1 9.626999918557779 - +chr1 74733137 74733146 ETV6_MA0645.1 8.549251143360260 + +chr1 74858288 74858297 ETV6_MA0645.1 7.631556185347776 + +chr1 75615212 75615221 ETV6_MA0645.1 7.897775560875401 + +chr1 75786669 75786678 ETV6_MA0645.1 10.506791107841845 - +chr1 75985865 75985874 ETV6_MA0645.1 7.612014561957706 + +chr1 76154879 76154888 ETV6_MA0645.1 7.908175724569679 - +chr1 76190888 76190897 ETV6_MA0645.1 8.059407042913682 + +chr1 76871719 76871728 ETV6_MA0645.1 9.179607437601803 - +chr1 77413865 77413874 ETV6_MA0645.1 8.313716293661793 - +chr1 77414107 77414116 ETV6_MA0645.1 8.059407042913682 + +chr1 77759558 77759567 ETV6_MA0645.1 8.647978539603102 + +chr1 79742199 79742208 ETV6_MA0645.1 7.631556185347774 - +chr1 79742455 79742464 ETV6_MA0645.1 7.462665840147789 + +chr1 79777993 79778002 ETV6_MA0645.1 9.626999918557781 + +chr1 80639951 80639960 ETV6_MA0645.1 8.078948666303752 + +chr1 83485772 83485781 ETV6_MA0645.1 8.926243411596479 - +chr1 83488194 83488203 ETV6_MA0645.1 7.462665840147790 - +chr1 84077952 84077961 ETV6_MA0645.1 9.808745613280065 - +chr1 84944877 84944886 ETV6_MA0645.1 7.615670799100013 - +chr1 84997353 84997362 ETV6_MA0645.1 8.818704930315960 + +chr1 85148779 85148788 ETV6_MA0645.1 8.345168041831375 - +chr1 85276527 85276536 ETV6_MA0645.1 7.727049170162543 - +chr1 86395917 86395926 ETV6_MA0645.1 9.698496119600025 - +chr1 86617067 86617076 ETV6_MA0645.1 8.313716293661793 + +chr1 86617115 86617124 ETV6_MA0645.1 9.626999918557781 + +chr1 86755997 86756006 ETV6_MA0645.1 8.313716293661793 + +chr1 86774527 86774536 ETV6_MA0645.1 7.615670799100013 - +chr1 87151695 87151704 ETV6_MA0645.1 8.647978539603102 + +chr1 87335281 87335290 ETV6_MA0645.1 7.851205648798481 + +chr1 87449486 87449495 ETV6_MA0645.1 9.068139825358481 + +chr1 87588291 87588300 ETV6_MA0645.1 7.612014561957706 + +chr1 87588622 87588631 ETV6_MA0645.1 9.626999918557781 + +chr1 88192094 88192103 ETV6_MA0645.1 7.495162284139129 + +chr1 89429352 89429361 ETV6_MA0645.1 9.808745613280065 - +chr1 89553001 89553010 ETV6_MA0645.1 8.682311029107311 - +chr1 89632920 89632929 ETV6_MA0645.1 7.851205648798481 + +chr1 89843634 89843643 ETV6_MA0645.1 9.043213536393157 + +chr1 90509860 90509869 ETV6_MA0645.1 9.179607437601804 + +chr1 91055019 91055028 ETV6_MA0645.1 7.475620660749058 + +chr1 91404731 91404740 ETV6_MA0645.1 7.952813786375947 - +chr1 91803878 91803887 ETV6_MA0645.1 9.043213536393155 - +chr1 92486152 92486161 ETV6_MA0645.1 7.495162284139127 - +chr1 93181188 93181197 ETV6_MA0645.1 7.863110777367919 - +chr1 93345850 93345859 ETV6_MA0645.1 7.908175724569679 + +chr1 94037435 94037444 ETV6_MA0645.1 8.313716293661793 - +chr1 94720697 94720706 ETV6_MA0645.1 8.313716293661793 - +chr1 95072922 95072931 ETV6_MA0645.1 9.068139825358481 - +chr1 95234192 95234201 ETV6_MA0645.1 7.733392268152134 + +chr1 96515803 96515812 ETV6_MA0645.1 7.612014561957706 + +chr1 97461976 97461985 ETV6_MA0645.1 7.965464761195636 - +chr1 97921569 97921578 ETV6_MA0645.1 9.043213536393157 + +chr1 98688467 98688476 ETV6_MA0645.1 9.626999918557779 - +chr1 99766632 99766641 ETV6_MA0645.1 9.429042332644325 - +chr1 99850084 99850093 ETV6_MA0645.1 10.145888600556001 + +chr1 100133147 100133156 ETV6_MA0645.1 8.425094664724323 + +chr1 100249826 100249835 ETV6_MA0645.1 7.981554522146008 + +chr1 100266091 100266100 ETV6_MA0645.1 7.952813786375947 - +chr1 100523208 100523217 ETV6_MA0645.1 9.626999918557779 - +chr1 100536329 100536338 ETV6_MA0645.1 7.615670799100013 - +chr1 100894870 100894879 ETV6_MA0645.1 9.043213536393155 - +chr1 100896087 100896096 ETV6_MA0645.1 9.361353132324089 + +chr1 101128275 101128284 ETV6_MA0645.1 8.928954423996000 + +chr1 101179260 101179269 ETV6_MA0645.1 9.043213536393157 + +chr1 101235713 101235722 ETV6_MA0645.1 7.851205648798481 + +chr1 101309884 101309893 ETV6_MA0645.1 8.078948666303750 - +chr1 103784310 103784319 ETV6_MA0645.1 9.179607437601804 + +chr1 104467889 104467898 ETV6_MA0645.1 8.059407042913682 - +chr1 104593208 104593217 ETV6_MA0645.1 8.595821055437179 - +chr1 104760207 104760216 ETV6_MA0645.1 7.866323812705818 + +chr1 104933140 104933149 ETV6_MA0645.1 8.928954423995998 - +chr1 106996081 106996090 ETV6_MA0645.1 8.549251143360259 - +chr1 106996165 106996174 ETV6_MA0645.1 8.078948666303750 - +chr1 107056607 107056616 ETV6_MA0645.1 7.897775560875401 + +chr1 107057535 107057544 ETV6_MA0645.1 9.008881046888947 - +chr1 107935706 107935715 ETV6_MA0645.1 8.313716293661793 + +chr1 107964197 107964206 ETV6_MA0645.1 9.266097411271934 - +chr1 108200418 108200427 ETV6_MA0645.1 9.808745613280065 + +chr1 108559856 108559865 ETV6_MA0645.1 7.545303475440257 + +chr1 108877234 108877243 ETV6_MA0645.1 8.647978539603102 - +chr1 109076003 109076012 ETV6_MA0645.1 9.945139514488714 - +chr1 109076017 109076026 ETV6_MA0645.1 10.506791107841845 - +chr1 109076098 109076107 ETV6_MA0645.1 8.228197917034699 + +chr1 109100183 109100192 ETV6_MA0645.1 8.852864614020149 - +chr1 109213843 109213852 ETV6_MA0645.1 8.425094664724323 - +chr1 109283254 109283263 ETV6_MA0645.1 7.571032737293745 + +chr1 109426070 109426079 ETV6_MA0645.1 7.460829794634918 - +chr1 109426591 109426600 ETV6_MA0645.1 9.945139514488714 - +chr1 109548491 109548500 ETV6_MA0645.1 8.852864614020149 - +chr1 109548561 109548570 ETV6_MA0645.1 9.808745613280065 + +chr1 109816626 109816635 ETV6_MA0645.1 9.266097411271934 - +chr1 110210103 110210112 ETV6_MA0645.1 8.310835552327166 + +chr1 110787855 110787864 ETV6_MA0645.1 8.928954423995998 - +chr1 110873069 110873078 ETV6_MA0645.1 8.928954423995998 - +chr1 111139938 111139947 ETV6_MA0645.1 7.952813786375947 - +chr1 111222047 111222056 ETV6_MA0645.1 7.475620660749058 + +chr1 111507743 111507752 ETV6_MA0645.1 9.626999918557779 - +chr1 111592837 111592846 ETV6_MA0645.1 7.462665840147790 - +chr1 112619657 112619666 ETV6_MA0645.1 8.234918548151335 - +chr1 112705068 112705077 ETV6_MA0645.1 8.928954423995998 - +chr1 113192137 113192146 ETV6_MA0645.1 8.234918548151336 + +chr1 113759702 113759711 ETV6_MA0645.1 8.078948666303750 - +chr1 113812413 113812422 ETV6_MA0645.1 7.727049170162543 + +chr1 113859880 113859889 ETV6_MA0645.1 8.059407042913682 + +chr1 113904886 113904895 ETV6_MA0645.1 7.698504535627835 - +chr1 113929520 113929529 ETV6_MA0645.1 10.392531995444690 - +chr1 114108970 114108979 ETV6_MA0645.1 8.345168041831377 + +chr1 114511539 114511548 ETV6_MA0645.1 9.651926207523106 + +chr1 114511868 114511877 ETV6_MA0645.1 7.495162284139129 + +chr1 114716759 114716768 ETV6_MA0645.1 9.808745613280065 - +chr1 114757295 114757304 ETV6_MA0645.1 8.313716293661793 - +chr1 114780694 114780703 ETV6_MA0645.1 7.981554522146009 - +chr1 115976235 115976244 ETV6_MA0645.1 9.626999918557779 - +chr1 116378019 116378028 ETV6_MA0645.1 9.626999918557781 + +chr1 116597152 116597161 ETV6_MA0645.1 8.078948666303752 + +chr1 117001431 117001440 ETV6_MA0645.1 7.462665840147790 - +chr1 117060294 117060303 ETV6_MA0645.1 7.863443071371191 + +chr1 117367427 117367436 ETV6_MA0645.1 7.851205648798481 + +chr1 117929295 117929304 ETV6_MA0645.1 9.266097411271936 + +chr1 119323794 119323803 ETV6_MA0645.1 9.626999918557781 + +chr1 119324339 119324348 ETV6_MA0645.1 9.626999918557781 + +chr1 119662354 119662363 ETV6_MA0645.1 9.626999918557781 + +chr1 120176436 120176445 ETV6_MA0645.1 8.928954423995998 - +chr1 120723950 120723959 ETV6_MA0645.1 8.730996838082545 - +chr1 120844387 120844396 ETV6_MA0645.1 7.851205648798479 - +chr1 120844741 120844750 ETV6_MA0645.1 7.931132271691427 - +chr1 144419210 144419219 ETV6_MA0645.1 7.851205648798481 + +chr1 144524355 144524364 ETV6_MA0645.1 8.928954423996000 + +chr1 144546396 144546405 ETV6_MA0645.1 10.012828714808951 - +chr1 144551992 144552001 ETV6_MA0645.1 7.952813786375947 - +chr1 145927597 145927606 ETV6_MA0645.1 10.506791107841845 + +chr1 145932882 145932891 ETV6_MA0645.1 9.179607437601804 + +chr1 145964495 145964504 ETV6_MA0645.1 7.895064548475879 + +chr1 145979509 145979518 ETV6_MA0645.1 8.595821055437181 + +chr1 146035942 146035951 ETV6_MA0645.1 7.612014561957706 + +chr1 146038217 146038226 ETV6_MA0645.1 10.729674982720626 + +chr1 146938321 146938330 ETV6_MA0645.1 7.908175724569679 + +chr1 147084766 147084775 ETV6_MA0645.1 8.310835552327166 - +chr1 147173174 147173183 ETV6_MA0645.1 7.571032737293745 + +chr1 147225624 147225633 ETV6_MA0645.1 7.604562253909790 - +chr1 148152314 148152323 ETV6_MA0645.1 7.908175724569679 - +chr1 148402387 148402396 ETV6_MA0645.1 7.615670799100013 - +chr1 149636423 149636432 ETV6_MA0645.1 7.615670799100013 - +chr1 149927821 149927830 ETV6_MA0645.1 10.145888600556001 - +chr1 150268992 150269001 ETV6_MA0645.1 9.626999918557779 - +chr1 150293842 150293851 ETV6_MA0645.1 7.848494636398960 - +chr1 150293848 150293857 ETV6_MA0645.1 8.425094664724323 - +chr1 150562516 150562525 ETV6_MA0645.1 8.464777462554922 + +chr1 150579350 150579359 ETV6_MA0645.1 8.310835552327166 - +chr1 150579595 150579604 ETV6_MA0645.1 11.090577490006471 + +chr1 150765836 150765845 ETV6_MA0645.1 8.078948666303752 + +chr1 150926352 150926361 ETV6_MA0645.1 7.616799676482501 - +chr1 151059626 151059635 ETV6_MA0645.1 8.310835552327166 + +chr1 151070748 151070757 ETV6_MA0645.1 7.981554522146009 - +chr1 151166009 151166018 ETV6_MA0645.1 7.698504535627836 + +chr1 151166023 151166032 ETV6_MA0645.1 9.698496119600025 + +chr1 151190218 151190227 ETV6_MA0645.1 8.154819119458368 + +chr1 151254668 151254677 ETV6_MA0645.1 7.863443071371191 + +chr1 151281515 151281524 ETV6_MA0645.1 8.425094664724323 - +chr1 151282297 151282306 ETV6_MA0645.1 7.897775560875401 + +chr1 151399533 151399542 ETV6_MA0645.1 11.090577490006471 - +chr1 151790524 151790533 ETV6_MA0645.1 7.952813786375947 - +chr1 151909713 151909722 ETV6_MA0645.1 10.145888600556001 - +chr1 152036642 152036651 ETV6_MA0645.1 9.626999918557779 - +chr1 152048257 152048266 ETV6_MA0645.1 8.682311029107312 + +chr1 152908440 152908449 ETV6_MA0645.1 8.549251143360260 + +chr1 153634391 153634400 ETV6_MA0645.1 7.733392268152134 + +chr1 153671263 153671272 ETV6_MA0645.1 9.008881046888947 + +chr1 153727961 153727970 ETV6_MA0645.1 8.200586058647126 + +chr1 153728003 153728012 ETV6_MA0645.1 9.808745613280065 - +chr1 153775921 153775930 ETV6_MA0645.1 7.727049170162543 + +chr1 153783524 153783533 ETV6_MA0645.1 8.313716293661793 + +chr1 153791350 153791359 ETV6_MA0645.1 9.626999918557781 + +chr1 154157918 154157927 ETV6_MA0645.1 8.682311029107311 - +chr1 154157954 154157963 ETV6_MA0645.1 7.462665840147790 - +chr1 154182422 154182431 ETV6_MA0645.1 7.545303475440257 - +chr1 154183193 154183202 ETV6_MA0645.1 9.945139514488714 - +chr1 154220683 154220692 ETV6_MA0645.1 7.545303475440257 + +chr1 154558655 154558664 ETV6_MA0645.1 7.495162284139127 - +chr1 154608112 154608121 ETV6_MA0645.1 7.475620660749058 + +chr1 154974126 154974135 ETV6_MA0645.1 7.908175724569679 - +chr1 154974171 154974180 ETV6_MA0645.1 10.506791107841845 + +chr1 154974376 154974385 ETV6_MA0645.1 9.808745613280065 - +chr1 154983153 154983162 ETV6_MA0645.1 7.534162041190034 - +chr1 155085072 155085081 ETV6_MA0645.1 7.545303475440257 - +chr1 155227488 155227497 ETV6_MA0645.1 8.491962106734304 + +chr1 155273626 155273635 ETV6_MA0645.1 9.314783220247170 + +chr1 155308639 155308648 ETV6_MA0645.1 7.727049170162543 - +chr1 155308839 155308848 ETV6_MA0645.1 7.780805436078723 - +chr1 155609831 155609840 ETV6_MA0645.1 7.931132271691427 - +chr1 155745413 155745422 ETV6_MA0645.1 7.931132271691427 - +chr1 155934426 155934435 ETV6_MA0645.1 10.392531995444690 - +chr1 155946372 155946381 ETV6_MA0645.1 8.595821055437181 + +chr1 156193972 156193981 ETV6_MA0645.1 8.454133936206020 + +chr1 156225576 156225585 ETV6_MA0645.1 7.863110777367919 + +chr1 156501320 156501329 ETV6_MA0645.1 7.475620660749058 + +chr1 156660284 156660293 ETV6_MA0645.1 7.571032737293745 - +chr1 156728437 156728446 ETV6_MA0645.1 8.425094664724323 + +chr1 156740939 156740948 ETV6_MA0645.1 9.429042332644325 - +chr1 156741225 156741234 ETV6_MA0645.1 7.965464761195636 + +chr1 157138387 157138396 ETV6_MA0645.1 8.345168041831377 + +chr1 157138534 157138543 ETV6_MA0645.1 8.154819119458368 - +chr1 157181908 157181917 ETV6_MA0645.1 8.078948666303750 - +chr1 157403343 157403352 ETV6_MA0645.1 8.682311029107312 + +chr1 157403862 157403871 ETV6_MA0645.1 8.078948666303750 - +chr1 157512250 157512259 ETV6_MA0645.1 9.626999918557781 + +chr1 157653313 157653322 ETV6_MA0645.1 9.179607437601803 - +chr1 157806835 157806844 ETV6_MA0645.1 9.698496119600025 + +chr1 157833130 157833139 ETV6_MA0645.1 7.462665840147790 - +chr1 158149810 158149819 ETV6_MA0645.1 8.313716293661793 + +chr1 158952583 158952592 ETV6_MA0645.1 9.626999918557781 + +chr1 159009097 159009106 ETV6_MA0645.1 9.429042332644325 + +chr1 159068240 159068249 ETV6_MA0645.1 8.078948666303750 - +chr1 159781132 159781141 ETV6_MA0645.1 7.616799676482501 - +chr1 159839233 159839242 ETV6_MA0645.1 7.462665840147789 + +chr1 159889971 159889980 ETV6_MA0645.1 7.495162284139129 + +chr1 159910608 159910617 ETV6_MA0645.1 7.604562253909790 + +chr1 159925033 159925042 ETV6_MA0645.1 8.682311029107312 + +chr1 160031984 160031993 ETV6_MA0645.1 9.008881046888947 - +chr1 160262788 160262797 ETV6_MA0645.1 8.682311029107311 - +chr1 160343287 160343296 ETV6_MA0645.1 9.429042332644325 - +chr1 160664913 160664922 ETV6_MA0645.1 9.626999918557779 - +chr1 160790271 160790280 ETV6_MA0645.1 7.631556185347774 - +chr1 160837699 160837708 ETV6_MA0645.1 10.392531995444690 - +chr1 160837729 160837738 ETV6_MA0645.1 8.345168041831375 - +chr1 161013913 161013922 ETV6_MA0645.1 8.345168041831375 - +chr1 161045096 161045105 ETV6_MA0645.1 7.462665840147789 + +chr1 161045975 161045984 ETV6_MA0645.1 10.392531995444690 + +chr1 161046026 161046035 ETV6_MA0645.1 11.090577490006471 - +chr1 161185338 161185347 ETV6_MA0645.1 8.481561943040022 - +chr1 161185927 161185936 ETV6_MA0645.1 7.851205648798479 - +chr1 161186060 161186069 ETV6_MA0645.1 7.462665840147790 - +chr1 161186114 161186123 ETV6_MA0645.1 8.595821055437179 - +chr1 161202341 161202350 ETV6_MA0645.1 9.945139514488714 - +chr1 161314380 161314389 ETV6_MA0645.1 7.863110777367919 - +chr1 161389968 161389977 ETV6_MA0645.1 8.269078231855525 - +chr1 161399347 161399356 ETV6_MA0645.1 8.116990948930084 + +chr1 161399379 161399388 ETV6_MA0645.1 8.342457029431856 - +chr1 161399986 161399995 ETV6_MA0645.1 8.730996838082545 - +chr1 161622267 161622276 ETV6_MA0645.1 7.631556185347774 - +chr1 161707184 161707193 ETV6_MA0645.1 9.179607437601803 - +chr1 161718973 161718982 ETV6_MA0645.1 7.631556185347776 + +chr1 161718997 161719006 ETV6_MA0645.1 8.078948666303752 + +chr1 161727041 161727050 ETV6_MA0645.1 7.863443071371191 - +chr1 161766506 161766515 ETV6_MA0645.1 9.945139514488714 - +chr1 162497804 162497813 ETV6_MA0645.1 7.644411534870075 - +chr1 163321627 163321636 ETV6_MA0645.1 8.481561943040022 - +chr1 163321716 163321725 ETV6_MA0645.1 8.154819119458368 + +chr1 163321783 163321792 ETV6_MA0645.1 8.345168041831375 - +chr1 163697242 163697251 ETV6_MA0645.1 10.145888600556001 + +chr1 165598520 165598529 ETV6_MA0645.1 8.682311029107312 + +chr1 165768885 165768894 ETV6_MA0645.1 11.090577490006471 - +chr1 165768891 165768900 ETV6_MA0645.1 8.064192157438477 - +chr1 165857171 165857180 ETV6_MA0645.1 9.626999918557781 + +chr1 166839824 166839833 ETV6_MA0645.1 9.008881046888947 + +chr1 167044203 167044212 ETV6_MA0645.1 10.392531995444690 - +chr1 167455152 167455161 ETV6_MA0645.1 7.462665840147789 + +chr1 167617778 167617787 ETV6_MA0645.1 7.495162284139127 - +chr1 167628274 167628283 ETV6_MA0645.1 10.392531995444690 - +chr1 167935682 167935691 ETV6_MA0645.1 7.545303475440257 + +chr1 168178877 168178886 ETV6_MA0645.1 7.616799676482501 + +chr1 168179341 168179350 ETV6_MA0645.1 10.145888600556001 - +chr1 168467564 168467573 ETV6_MA0645.1 7.895064548475879 + +chr1 169044548 169044557 ETV6_MA0645.1 9.626999918557779 - +chr1 169367961 169367970 ETV6_MA0645.1 8.113763790973723 - +chr1 169367985 169367994 ETV6_MA0645.1 9.068139825358481 + +chr1 169368182 169368191 ETV6_MA0645.1 8.815036443491865 + +chr1 169712235 169712244 ETV6_MA0645.1 7.495162284139127 - +chr1 169794716 169794725 ETV6_MA0645.1 9.808745613280065 - +chr1 169894211 169894220 ETV6_MA0645.1 8.228197917034699 - +chr1 170074523 170074532 ETV6_MA0645.1 7.534162041190034 - +chr1 170532559 170532568 ETV6_MA0645.1 9.626999918557781 + +chr1 171314158 171314167 ETV6_MA0645.1 7.752861283687877 + +chr1 171486297 171486306 ETV6_MA0645.1 10.643185009050494 - +chr1 172342869 172342878 ETV6_MA0645.1 7.462665840147790 - +chr1 172380930 172380939 ETV6_MA0645.1 8.345168041831375 - +chr1 172443890 172443899 ETV6_MA0645.1 10.392531995444690 - +chr1 172444077 172444086 ETV6_MA0645.1 10.145888600556001 - +chr1 172725221 172725230 ETV6_MA0645.1 8.549251143360259 - +chr1 172819149 172819158 ETV6_MA0645.1 7.615670799100013 - +chr1 173195737 173195746 ETV6_MA0645.1 8.682311029107312 + +chr1 173222819 173222828 ETV6_MA0645.1 9.626999918557781 + +chr1 173429702 173429711 ETV6_MA0645.1 8.549251143360260 + +chr1 173476678 173476687 ETV6_MA0645.1 9.626999918557779 - +chr1 173714851 173714860 ETV6_MA0645.1 8.511347374631841 - +chr1 173714923 173714932 ETV6_MA0645.1 7.897775560875400 - +chr1 173824199 173824208 ETV6_MA0645.1 8.926243411596479 - +chr1 173868355 173868364 ETV6_MA0645.1 10.145888600556001 - +chr1 174998836 174998845 ETV6_MA0645.1 8.367643962535888 - +chr1 174999696 174999705 ETV6_MA0645.1 7.534162041190034 - +chr1 175029845 175029854 ETV6_MA0645.1 8.958739855587817 - +chr1 175142132 175142141 ETV6_MA0645.1 8.228197917034699 + +chr1 175142217 175142226 ETV6_MA0645.1 7.698504535627836 + +chr1 175189023 175189032 ETV6_MA0645.1 8.313716293661793 - +chr1 175189085 175189094 ETV6_MA0645.1 8.454133936206020 + +chr1 175189126 175189135 ETV6_MA0645.1 9.179607437601803 - +chr1 175209281 175209290 ETV6_MA0645.1 7.981554522146009 - +chr1 175412820 175412829 ETV6_MA0645.1 7.615670799100013 + +chr1 175600940 175600949 ETV6_MA0645.1 7.462665840147790 - +chr1 176206898 176206907 ETV6_MA0645.1 8.154819119458368 + +chr1 176897844 176897853 ETV6_MA0645.1 7.866323812705818 + +chr1 178411981 178411990 ETV6_MA0645.1 9.043213536393157 + +chr1 178608570 178608579 ETV6_MA0645.1 9.179607437601803 - +chr1 179089117 179089126 ETV6_MA0645.1 9.626999918557781 + +chr1 179129816 179129825 ETV6_MA0645.1 7.897775560875401 + +chr1 179365975 179365984 ETV6_MA0645.1 8.928954423996000 + +chr1 179882790 179882799 ETV6_MA0645.1 9.626999918557781 + +chr1 180954296 180954305 ETV6_MA0645.1 8.647978539603102 - +chr1 181033276 181033285 ETV6_MA0645.1 9.179607437601803 - +chr1 181062982 181062991 ETV6_MA0645.1 7.965464761195636 + +chr1 181129303 181129312 ETV6_MA0645.1 9.626999918557781 + +chr1 181486069 181486078 ETV6_MA0645.1 7.497003500112966 - +chr1 182391500 182391509 ETV6_MA0645.1 7.863443071371191 + +chr1 182427018 182427027 ETV6_MA0645.1 10.643185009050494 - +chr1 182588874 182588883 ETV6_MA0645.1 9.095133756796466 + +chr1 182677430 182677439 ETV6_MA0645.1 7.631556185347774 - +chr1 182840010 182840019 ETV6_MA0645.1 7.733392268152134 + +chr1 183048844 183048853 ETV6_MA0645.1 7.733392268152134 - +chr1 183048899 183048908 ETV6_MA0645.1 8.928954423995998 - +chr1 183194950 183194959 ETV6_MA0645.1 7.495162284139127 - +chr1 183471636 183471645 ETV6_MA0645.1 8.928954423996000 + +chr1 183590612 183590621 ETV6_MA0645.1 9.179607437601804 + +chr1 183604480 183604489 ETV6_MA0645.1 8.154819119458368 + +chr1 183604973 183604982 ETV6_MA0645.1 8.313716293661793 - +chr1 183605039 183605048 ETV6_MA0645.1 9.626999918557781 + +chr1 183605091 183605100 ETV6_MA0645.1 9.542526237752442 + +chr1 183635757 183635766 ETV6_MA0645.1 7.497003500112966 - +chr1 183956850 183956859 ETV6_MA0645.1 9.043213536393157 + +chr1 184037141 184037150 ETV6_MA0645.1 9.266097411271936 + +chr1 184747469 184747478 ETV6_MA0645.1 9.626999918557781 + +chr1 184754910 184754919 ETV6_MA0645.1 9.698496119600025 - +chr1 185045679 185045688 ETV6_MA0645.1 8.200586058647126 + +chr1 185157125 185157134 ETV6_MA0645.1 8.481561943040024 + +chr1 185316844 185316853 ETV6_MA0645.1 8.647978539603102 - +chr1 185317793 185317802 ETV6_MA0645.1 7.615670799100013 + +chr1 185317979 185317988 ETV6_MA0645.1 7.612014561957706 - +chr1 185560117 185560126 ETV6_MA0645.1 8.078948666303752 + +chr1 186374765 186374774 ETV6_MA0645.1 8.682311029107312 + +chr1 186618593 186618602 ETV6_MA0645.1 8.928954423996000 + +chr1 187051944 187051953 ETV6_MA0645.1 7.897775560875401 + +chr1 191174330 191174339 ETV6_MA0645.1 8.059407042913682 + +chr1 191582368 191582377 ETV6_MA0645.1 9.179607437601803 - +chr1 192545478 192545487 ETV6_MA0645.1 8.078948666303752 + +chr1 192545936 192545945 ETV6_MA0645.1 9.179607437601803 - +chr1 193059921 193059930 ETV6_MA0645.1 8.647978539603102 - +chr1 193070546 193070555 ETV6_MA0645.1 10.506791107841845 + +chr1 193071187 193071196 ETV6_MA0645.1 9.043213536393157 + +chr1 193104586 193104595 ETV6_MA0645.1 10.729674982720626 + +chr1 193104693 193104702 ETV6_MA0645.1 9.266097411271936 + +chr1 193104800 193104809 ETV6_MA0645.1 8.345168041831375 - +chr1 194289715 194289724 ETV6_MA0645.1 8.549251143360259 - +chr1 194796218 194796227 ETV6_MA0645.1 7.897775560875401 + +chr1 196828071 196828080 ETV6_MA0645.1 9.043213536393155 - +chr1 197201297 197201306 ETV6_MA0645.1 10.145888600556001 - +chr1 197775325 197775334 ETV6_MA0645.1 7.952813786375947 - +chr1 198157268 198157277 ETV6_MA0645.1 7.604562253909790 - +chr1 198353374 198353383 ETV6_MA0645.1 7.897775560875401 + +chr1 198597812 198597821 ETV6_MA0645.1 8.059407042913682 + +chr1 198597886 198597895 ETV6_MA0645.1 8.549251143360260 + +chr1 198599260 198599269 ETV6_MA0645.1 9.043213536393155 - +chr1 198621064 198621073 ETV6_MA0645.1 11.090577490006471 - +chr1 198621693 198621702 ETV6_MA0645.1 8.228197917034699 - +chr1 198622784 198622793 ETV6_MA0645.1 8.928954423995998 - +chr1 199089421 199089430 ETV6_MA0645.1 7.631556185347774 - +chr1 199172878 199172887 ETV6_MA0645.1 7.475620660749058 + +chr1 199173554 199173563 ETV6_MA0645.1 8.481561943040022 - +chr1 200620820 200620829 ETV6_MA0645.1 10.145888600556001 + +chr1 200669931 200669940 ETV6_MA0645.1 7.952813786375947 - +chr1 200870024 200870033 ETV6_MA0645.1 7.866323812705818 - +chr1 200888439 200888448 ETV6_MA0645.1 7.545303475440257 + +chr1 201468698 201468707 ETV6_MA0645.1 9.008881046888947 - +chr1 201506841 201506850 ETV6_MA0645.1 8.491962106734304 + +chr1 201507108 201507117 ETV6_MA0645.1 8.454133936206020 + +chr1 201512047 201512056 ETV6_MA0645.1 9.626999918557779 - +chr1 201955461 201955470 ETV6_MA0645.1 10.392531995444690 - +chr1 201982754 201982763 ETV6_MA0645.1 9.068139825358481 - +chr1 202927071 202927080 ETV6_MA0645.1 10.729674982720626 - +chr1 202957992 202958001 ETV6_MA0645.1 7.644411534870074 + +chr1 203287600 203287609 ETV6_MA0645.1 7.462665840147789 + +chr1 203289603 203289612 ETV6_MA0645.1 7.866323812705818 + +chr1 203289616 203289625 ETV6_MA0645.1 9.179607437601804 + +chr1 203626685 203626694 ETV6_MA0645.1 8.234918548151336 + +chr1 203754532 203754541 ETV6_MA0645.1 8.549251143360259 - +chr1 203861582 203861591 ETV6_MA0645.1 11.090577490006471 - +chr1 203861588 203861597 ETV6_MA0645.1 8.425094664724323 - +chr1 203861605 203861614 ETV6_MA0645.1 7.880991080390297 + +chr1 204411953 204411962 ETV6_MA0645.1 8.200253764643854 - +chr1 204516083 204516092 ETV6_MA0645.1 7.545303475440257 + +chr1 204516388 204516397 ETV6_MA0645.1 8.730996838082545 + +chr1 204531156 204531165 ETV6_MA0645.1 8.078948666303752 + +chr1 205288400 205288409 ETV6_MA0645.1 7.615670799100013 - +chr1 205288450 205288459 ETV6_MA0645.1 9.043213536393155 - +chr1 205440952 205440961 ETV6_MA0645.1 7.851205648798479 - +chr1 205631316 205631325 ETV6_MA0645.1 7.965464761195636 - +chr1 205631529 205631538 ETV6_MA0645.1 9.043213536393155 - +chr1 205632025 205632034 ETV6_MA0645.1 10.145888600556001 - +chr1 206556843 206556852 ETV6_MA0645.1 8.078948666303752 + +chr1 206557149 206557158 ETV6_MA0645.1 9.626999918557781 + +chr1 206563133 206563142 ETV6_MA0645.1 7.981554522146008 + +chr1 206580124 206580133 ETV6_MA0645.1 7.952813786375947 - +chr1 206685702 206685711 ETV6_MA0645.1 7.727049170162543 - +chr1 206967646 206967655 ETV6_MA0645.1 9.043213536393155 - +chr1 207752038 207752047 ETV6_MA0645.1 10.392531995444690 - +chr1 207822818 207822827 ETV6_MA0645.1 9.626999918557781 + +chr1 207935149 207935158 ETV6_MA0645.1 9.179607437601804 + +chr1 207963599 207963608 ETV6_MA0645.1 7.727049170162543 + +chr1 209039570 209039579 ETV6_MA0645.1 8.595821055437181 + +chr1 209756768 209756777 ETV6_MA0645.1 8.234918548151336 + +chr1 209769633 209769642 ETV6_MA0645.1 8.345168041831375 - +chr1 209769723 209769732 ETV6_MA0645.1 8.342457029431854 + +chr1 209784663 209784672 ETV6_MA0645.1 8.730996838082545 + +chr1 209784746 209784755 ETV6_MA0645.1 9.945139514488714 + +chr1 209828008 209828017 ETV6_MA0645.1 7.604562253909790 - diff --git a/demo/known_tfbs_chr1_hg38/EVX1_MA0887.1.bed b/demo/known_tfbs_chr1_hg38/EVX1_MA0887.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/EVX2_MA0888.1.bed b/demo/known_tfbs_chr1_hg38/EVX2_MA0888.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/EWSR1_FLI1_MA0149.1.bed b/demo/known_tfbs_chr1_hg38/EWSR1_FLI1_MA0149.1.bed new file mode 100644 index 0000000..a1380d3 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/EWSR1_FLI1_MA0149.1.bed @@ -0,0 +1,2858 @@ +chr1 827560 827577 EWSR1_FLI1_MA0149.1 -9.801692903372848 + +chr1 1019832 1019849 EWSR1_FLI1_MA0149.1 -17.618504635034228 - +chr1 1019944 1019961 EWSR1_FLI1_MA0149.1 -3.283353902160739 + +chr1 1019964 1019981 EWSR1_FLI1_MA0149.1 -12.166625240352749 + +chr1 1019968 1019985 EWSR1_FLI1_MA0149.1 -7.462241105801551 + +chr1 1019971 1019988 EWSR1_FLI1_MA0149.1 -11.820111015450413 + +chr1 1019980 1019997 EWSR1_FLI1_MA0149.1 -2.868975431574532 + +chr1 1019983 1020000 EWSR1_FLI1_MA0149.1 -10.702097312027517 + +chr1 1020016 1020033 EWSR1_FLI1_MA0149.1 -14.360500316635544 + +chr1 1033237 1033254 EWSR1_FLI1_MA0149.1 -13.678162152782807 + +chr1 1157570 1157587 EWSR1_FLI1_MA0149.1 -21.401981230518391 + +chr1 1308552 1308569 EWSR1_FLI1_MA0149.1 -17.694307189044217 + +chr1 1505257 1505274 EWSR1_FLI1_MA0149.1 -10.622370958908419 + +chr1 1505258 1505275 EWSR1_FLI1_MA0149.1 -21.084000433272582 + +chr1 1505261 1505278 EWSR1_FLI1_MA0149.1 -21.912165372486310 + +chr1 1505262 1505279 EWSR1_FLI1_MA0149.1 -21.084000433272582 + +chr1 1574417 1574434 EWSR1_FLI1_MA0149.1 -17.664481015709296 + +chr1 1630232 1630249 EWSR1_FLI1_MA0149.1 -21.289095136233183 - +chr1 1678430 1678447 EWSR1_FLI1_MA0149.1 -13.399011268000134 - +chr1 1678434 1678451 EWSR1_FLI1_MA0149.1 -3.581916618262867 - +chr1 1678438 1678455 EWSR1_FLI1_MA0149.1 -7.166082967034054 - +chr1 1678443 1678460 EWSR1_FLI1_MA0149.1 -21.499217547323255 - +chr1 1678447 1678464 EWSR1_FLI1_MA0149.1 -14.379731673940224 - +chr1 1678710 1678727 EWSR1_FLI1_MA0149.1 -21.932075431804009 - +chr1 1778586 1778603 EWSR1_FLI1_MA0149.1 -22.456454281233935 + +chr1 1779250 1779267 EWSR1_FLI1_MA0149.1 -18.803135984990881 + 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EWSR1_FLI1_MA0149.1 -21.539665319075961 - +chr1 238187707 238187724 EWSR1_FLI1_MA0149.1 -20.560256160071358 + diff --git a/demo/known_tfbs_chr1_hg38/Esrra_MA0592.2.bed b/demo/known_tfbs_chr1_hg38/Esrra_MA0592.2.bed new file mode 100644 index 0000000..ececafd --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/Esrra_MA0592.2.bed @@ -0,0 +1,118 @@ +chr1 1407339 1407349 Esrra_MA0592.2 5.184025801987803 + +chr1 1678588 1678598 Esrra_MA0592.2 4.757997285891319 + +chr1 3900372 3900382 Esrra_MA0592.2 5.635620139168738 + +chr1 3910785 3910795 Esrra_MA0592.2 6.061988234904702 + +chr1 4267613 4267623 Esrra_MA0592.2 6.555503383194137 - +chr1 7954119 7954129 Esrra_MA0592.2 5.026294855364512 - +chr1 8183008 8183018 Esrra_MA0592.2 4.857219683697569 - +chr1 8879350 8879360 Esrra_MA0592.2 4.984787665308200 + +chr1 9181642 9181652 Esrra_MA0592.2 6.943521918992881 + +chr1 9588755 9588765 Esrra_MA0592.2 5.635620139168738 + +chr1 9629574 9629584 Esrra_MA0592.2 8.105484253194675 - +chr1 10210266 10210276 Esrra_MA0592.2 5.170805625631220 - +chr1 12078946 12078956 Esrra_MA0592.2 5.703194763552569 + +chr1 12078979 12078989 Esrra_MA0592.2 6.943521918992881 - +chr1 15524933 15524943 Esrra_MA0592.2 8.096392347250841 + +chr1 16013060 16013070 Esrra_MA0592.2 4.984787665308199 - +chr1 16441175 16441185 Esrra_MA0592.2 5.844112546863274 - +chr1 16567154 16567164 Esrra_MA0592.2 4.897122868725666 - +chr1 16905377 16905387 Esrra_MA0592.2 5.637011295503997 + +chr1 16905572 16905582 Esrra_MA0592.2 7.492537122711661 + +chr1 17054249 17054259 Esrra_MA0592.2 4.686724020807421 - +chr1 18956295 18956305 Esrra_MA0592.2 4.368460367607303 + +chr1 19596829 19596839 Esrra_MA0592.2 5.494160299515843 + +chr1 19596866 19596876 Esrra_MA0592.2 7.629046310775239 - +chr1 19799452 19799462 Esrra_MA0592.2 7.349686126723507 - +chr1 19799479 19799489 Esrra_MA0592.2 8.894217071454051 - +chr1 20507828 20507838 Esrra_MA0592.2 5.731493885835535 + +chr1 20507900 20507910 Esrra_MA0592.2 8.138418944982883 - +chr1 21334245 21334255 Esrra_MA0592.2 4.718476443040086 - +chr1 21782956 21782966 Esrra_MA0592.2 4.368460367607303 - +chr1 22039858 22039868 Esrra_MA0592.2 5.637011295503997 - +chr1 22451706 22451716 Esrra_MA0592.2 6.249958425987011 + +chr1 24929582 24929592 Esrra_MA0592.2 6.943521918992881 - +chr1 25247671 25247681 Esrra_MA0592.2 4.334702070993350 - +chr1 26865593 26865603 Esrra_MA0592.2 6.485283449802671 - +chr1 28518926 28518936 Esrra_MA0592.2 9.740863832994732 - +chr1 29182035 29182045 Esrra_MA0592.2 5.540447001036255 + +chr1 29182265 29182275 Esrra_MA0592.2 7.349686126723507 - +chr1 29231017 29231027 Esrra_MA0592.2 4.480797480151487 + +chr1 30743955 30743965 Esrra_MA0592.2 7.349686126723507 - +chr1 32222381 32222391 Esrra_MA0592.2 4.849732655429649 - +chr1 32650774 32650784 Esrra_MA0592.2 4.932391817332422 + +chr1 33036684 33036694 Esrra_MA0592.2 10.022191909147315 - +chr1 33181134 33181144 Esrra_MA0592.2 7.903294355360694 - +chr1 34860127 34860137 Esrra_MA0592.2 7.349686126723507 - +chr1 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32394433 FOSB_JUNB_var.2__MA1136.1 7.711267138209159 + +chr1 32394424 32394433 FOSB_JUNB_var.2__MA1136.1 8.949912784138482 - +chr1 36223816 36223825 FOSB_JUNB_var.2__MA1136.1 7.831334230608893 - +chr1 36464442 36464451 FOSB_JUNB_var.2__MA1136.1 7.338012350595804 - +chr1 38991237 38991246 FOSB_JUNB_var.2__MA1136.1 10.132971603748372 + +chr1 38991237 38991246 FOSB_JUNB_var.2__MA1136.1 10.132971603748370 - +chr1 40386010 40386019 FOSB_JUNB_var.2__MA1136.1 8.227229654184562 + +chr1 40386010 40386019 FOSB_JUNB_var.2__MA1136.1 8.433950268163080 - +chr1 41623452 41623461 FOSB_JUNB_var.2__MA1136.1 8.052267755684591 + +chr1 41623452 41623461 FOSB_JUNB_var.2__MA1136.1 8.252972174591157 - +chr1 42456683 42456692 FOSB_JUNB_var.2__MA1136.1 7.685964582553228 + +chr1 44674287 44674296 FOSB_JUNB_var.2__MA1136.1 7.831334230608893 - +chr1 45304131 45304140 FOSB_JUNB_var.2__MA1136.1 8.398725299132526 + +chr1 45304131 45304140 FOSB_JUNB_var.2__MA1136.1 8.208007851915461 - +chr1 46719180 46719189 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116738094 116738103 FOSB_JUNB_var.2__MA1136.1 7.588154649630104 + +chr1 116738094 116738103 FOSB_JUNB_var.2__MA1136.1 7.870689914727472 - +chr1 117121848 117121857 FOSB_JUNB_var.2__MA1136.1 7.786369907933198 + +chr1 117121848 117121857 FOSB_JUNB_var.2__MA1136.1 7.461124839174860 - +chr1 119267024 119267033 FOSB_JUNB_var.2__MA1136.1 8.949912784138482 + +chr1 119267024 119267033 FOSB_JUNB_var.2__MA1136.1 7.711267138209159 - +chr1 119348021 119348030 FOSB_JUNB_var.2__MA1136.1 8.252972174591157 + +chr1 119348021 119348030 FOSB_JUNB_var.2__MA1136.1 8.052267755684591 - +chr1 120851215 120851224 FOSB_JUNB_var.2__MA1136.1 8.012312324180817 + +chr1 120851215 120851224 FOSB_JUNB_var.2__MA1136.1 7.289629194226896 - +chr1 120942348 120942357 FOSB_JUNB_var.2__MA1136.1 7.289629194226896 + +chr1 120942348 120942357 FOSB_JUNB_var.2__MA1136.1 8.012312324180815 - +chr1 143233853 143233862 FOSB_JUNB_var.2__MA1136.1 8.648867598166825 + +chr1 143233853 143233862 FOSB_JUNB_var.2__MA1136.1 9.371550728120747 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FOSL1_JUNB_MA1137.1 7.940734682164750 - +chr1 181033704 181033716 FOSL1_JUNB_MA1137.1 7.323655913972776 + +chr1 181044652 181044664 FOSL1_JUNB_MA1137.1 7.381521657300737 + +chr1 181514376 181514388 FOSL1_JUNB_MA1137.1 9.167809154664774 + +chr1 181514376 181514388 FOSL1_JUNB_MA1137.1 10.320488578212949 - +chr1 181936865 181936877 FOSL1_JUNB_MA1137.1 8.437357997614363 - +chr1 182249263 182249275 FOSL1_JUNB_MA1137.1 7.362025440300263 + +chr1 182428204 182428216 FOSL1_JUNB_MA1137.1 9.257957904157063 + +chr1 182428204 182428216 FOSL1_JUNB_MA1137.1 8.044456752115344 - +chr1 183195254 183195266 FOSL1_JUNB_MA1137.1 9.406632255962421 - +chr1 183590530 183590542 FOSL1_JUNB_MA1137.1 8.108986987742410 + +chr1 183590530 183590542 FOSL1_JUNB_MA1137.1 7.457710507327406 - +chr1 183590956 183590968 FOSL1_JUNB_MA1137.1 7.424477540430522 + +chr1 183841793 183841805 FOSL1_JUNB_MA1137.1 7.764040140782000 - +chr1 184163857 184163869 FOSL1_JUNB_MA1137.1 8.972748594813282 + +chr1 184163857 184163869 FOSL1_JUNB_MA1137.1 10.586191718583638 - +chr1 184491714 184491726 FOSL1_JUNB_MA1137.1 7.863202284421998 + +chr1 184491714 184491726 FOSL1_JUNB_MA1137.1 8.818433802568453 - +chr1 184491980 184491992 FOSL1_JUNB_MA1137.1 8.558163663194373 + +chr1 184649578 184649590 FOSL1_JUNB_MA1137.1 7.525869362535675 + +chr1 184649578 184649590 FOSL1_JUNB_MA1137.1 9.139053177546483 - +chr1 184867388 184867400 FOSL1_JUNB_MA1137.1 9.233599938689943 + +chr1 184867388 184867400 FOSL1_JUNB_MA1137.1 8.706097506509419 - +chr1 184892366 184892378 FOSL1_JUNB_MA1137.1 7.871885635254319 - +chr1 184892441 184892453 FOSL1_JUNB_MA1137.1 9.121612907541795 + +chr1 184892441 184892453 FOSL1_JUNB_MA1137.1 9.430475542499838 - +chr1 185439886 185439898 FOSL1_JUNB_MA1137.1 8.204672054769555 + +chr1 185439886 185439898 FOSL1_JUNB_MA1137.1 9.357351478317730 - +chr1 186178880 186178892 FOSL1_JUNB_MA1137.1 7.304049678242153 + +chr1 186194567 186194579 FOSL1_JUNB_MA1137.1 8.857691794343751 + +chr1 186194567 186194579 FOSL1_JUNB_MA1137.1 7.435754049547607 - +chr1 187948296 187948308 FOSL1_JUNB_MA1137.1 7.466213147371801 - +chr1 187986891 187986903 FOSL1_JUNB_MA1137.1 7.281805934090949 + +chr1 188027793 188027805 FOSL1_JUNB_MA1137.1 7.355270259100794 + +chr1 190759994 190760006 FOSL1_JUNB_MA1137.1 8.135243259305533 - +chr1 192517118 192517130 FOSL1_JUNB_MA1137.1 7.765657434983998 - +chr1 192531244 192531256 FOSL1_JUNB_MA1137.1 8.365219338437658 + +chr1 192531244 192531256 FOSL1_JUNB_MA1137.1 9.499229052613401 - +chr1 192545068 192545080 FOSL1_JUNB_MA1137.1 7.278833013727914 + +chr1 192546377 192546389 FOSL1_JUNB_MA1137.1 8.693816256272138 + +chr1 192546377 192546389 FOSL1_JUNB_MA1137.1 7.595104030041430 - +chr1 192551108 192551120 FOSL1_JUNB_MA1137.1 8.833202818404054 + +chr1 192559584 192559596 FOSL1_JUNB_MA1137.1 7.496675787650673 + +chr1 192983521 192983533 FOSL1_JUNB_MA1137.1 9.372623931982840 + +chr1 192983521 192983533 FOSL1_JUNB_MA1137.1 10.518448824354934 - +chr1 193105125 193105137 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FOSL1_JUND_var.2__MA1143.1 7.863400947303476 + +chr1 1471682 1471691 FOSL1_JUND_var.2__MA1143.1 7.778495694255930 - +chr1 1512066 1512075 FOSL1_JUND_var.2__MA1143.1 7.778495694255930 - +chr1 6579999 6580008 FOSL1_JUND_var.2__MA1143.1 7.412455171636474 - +chr1 6861943 6861952 FOSL1_JUND_var.2__MA1143.1 7.838260841654614 - +chr1 7771270 7771279 FOSL1_JUND_var.2__MA1143.1 7.342264139088126 + +chr1 9164058 9164067 FOSL1_JUND_var.2__MA1143.1 7.107429686295338 - +chr1 9428956 9428965 FOSL1_JUND_var.2__MA1143.1 7.510516456468651 - +chr1 9428983 9428992 FOSL1_JUND_var.2__MA1143.1 8.576621585761753 + +chr1 9428983 9428992 FOSL1_JUND_var.2__MA1143.1 9.143209459795909 - +chr1 9539415 9539424 FOSL1_JUND_var.2__MA1143.1 8.594232102662751 + +chr1 9539415 9539424 FOSL1_JUND_var.2__MA1143.1 8.594232102662751 - +chr1 11980439 11980448 FOSL1_JUND_var.2__MA1143.1 7.214518770581874 + +chr1 12047669 12047678 FOSL1_JUND_var.2__MA1143.1 8.594232102662751 + +chr1 12047669 12047678 FOSL1_JUND_var.2__MA1143.1 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FOSL2_JUNB_MA1138.1 10.524168185652874 - +chr1 169139126 169139135 FOSL2_JUNB_MA1138.1 7.525978531725676 - +chr1 169139146 169139155 FOSL2_JUNB_MA1138.1 7.525978531725676 - +chr1 169139166 169139175 FOSL2_JUNB_MA1138.1 7.525978531725676 - +chr1 169162016 169162025 FOSL2_JUNB_MA1138.1 7.961493909718107 + +chr1 169390497 169390506 FOSL2_JUNB_MA1138.1 8.907353815827117 - +chr1 169908875 169908884 FOSL2_JUNB_MA1138.1 10.316393823104219 + +chr1 169908876 169908885 FOSL2_JUNB_MA1138.1 9.455856287275900 - +chr1 170881914 170881923 FOSL2_JUNB_MA1138.1 10.198002516013561 + +chr1 170881915 170881924 FOSL2_JUNB_MA1138.1 9.532634941163044 - +chr1 172342838 172342847 FOSL2_JUNB_MA1138.1 8.459276653602071 + +chr1 172342839 172342848 FOSL2_JUNB_MA1138.1 7.738575382901967 - +chr1 172343612 172343621 FOSL2_JUNB_MA1138.1 7.768086908918312 + +chr1 172343613 172343622 FOSL2_JUNB_MA1138.1 8.032128260549293 - +chr1 172343934 172343943 FOSL2_JUNB_MA1138.1 8.742079581649257 + +chr1 172343935 172343944 FOSL2_JUNB_MA1138.1 9.514486268064198 - +chr1 172358944 172358953 FOSL2_JUNB_MA1138.1 10.280589093898948 + +chr1 172358945 172358954 FOSL2_JUNB_MA1138.1 9.532634941163044 - +chr1 172746528 172746537 FOSL2_JUNB_MA1138.1 8.849118693213679 + +chr1 172746529 172746538 FOSL2_JUNB_MA1138.1 9.407447156499776 - +chr1 172819112 172819121 FOSL2_JUNB_MA1138.1 8.925502488925961 - +chr1 173222735 173222744 FOSL2_JUNB_MA1138.1 8.907353815827117 - +chr1 173222862 173222871 FOSL2_JUNB_MA1138.1 7.844865562805456 + +chr1 173222863 173222872 FOSL2_JUNB_MA1138.1 9.290065848376075 - +chr1 173355394 173355403 FOSL2_JUNB_MA1138.1 8.730108627391797 + +chr1 173355395 173355404 FOSL2_JUNB_MA1138.1 8.844072304029684 - +chr1 174022481 174022490 FOSL2_JUNB_MA1138.1 8.825923630930838 - +chr1 174815234 174815243 FOSL2_JUNB_MA1138.1 9.455856287275896 + +chr1 174815235 174815244 FOSL2_JUNB_MA1138.1 10.316393823104219 - +chr1 175023162 175023171 FOSL2_JUNB_MA1138.1 8.332932475949693 - +chr1 175390209 175390218 FOSL2_JUNB_MA1138.1 7.615016355936884 - +chr1 178608207 178608216 FOSL2_JUNB_MA1138.1 8.659493003763870 + +chr1 178608208 178608217 FOSL2_JUNB_MA1138.1 9.514486268064198 - +chr1 179551518 179551527 FOSL2_JUNB_MA1138.1 9.124644228452588 + +chr1 179551519 179551528 FOSL2_JUNB_MA1138.1 8.064741052541279 - +chr1 181514377 181514386 FOSL2_JUNB_MA1138.1 10.524168185652872 + +chr1 181514378 181514387 FOSL2_JUNB_MA1138.1 11.189535760503391 - +chr1 181936866 181936875 FOSL2_JUNB_MA1138.1 7.679945402113666 + +chr1 181936867 181936876 FOSL2_JUNB_MA1138.1 8.600493212275758 - +chr1 182428205 182428214 FOSL2_JUNB_MA1138.1 10.121223862126417 + +chr1 182428206 182428215 FOSL2_JUNB_MA1138.1 9.266230597826091 - +chr1 183195255 183195264 FOSL2_JUNB_MA1138.1 8.064741052541278 + +chr1 183195256 183195265 FOSL2_JUNB_MA1138.1 9.509439878880201 - +chr1 183590531 183590540 FOSL2_JUNB_MA1138.1 7.738575382901967 + +chr1 183590532 183590541 FOSL2_JUNB_MA1138.1 8.459276653602071 - +chr1 183807976 183807985 FOSL2_JUNB_MA1138.1 7.768086908918312 - +chr1 183841794 183841803 FOSL2_JUNB_MA1138.1 7.775760405652707 + +chr1 183841795 183841804 FOSL2_JUNB_MA1138.1 7.856966689992626 - +chr1 184163858 184163867 FOSL2_JUNB_MA1138.1 10.524168185652872 + +chr1 184163859 184163868 FOSL2_JUNB_MA1138.1 11.189535760503391 - +chr1 184491715 184491724 FOSL2_JUNB_MA1138.1 8.451603156867673 + +chr1 184491716 184491725 FOSL2_JUNB_MA1138.1 9.290065848376075 - +chr1 184491981 184491990 FOSL2_JUNB_MA1138.1 8.599336819286650 + +chr1 184649579 184649588 FOSL2_JUNB_MA1138.1 8.659493003763870 + +chr1 184649580 184649589 FOSL2_JUNB_MA1138.1 10.121223862126417 - +chr1 184867389 184867398 FOSL2_JUNB_MA1138.1 10.198002516013561 + +chr1 184867390 184867399 FOSL2_JUNB_MA1138.1 9.532634941163044 - +chr1 184892442 184892451 FOSL2_JUNB_MA1138.1 9.532634941163042 + +chr1 184892443 184892452 FOSL2_JUNB_MA1138.1 10.804740110075780 - +chr1 185439887 185439896 FOSL2_JUNB_MA1138.1 9.532634941163042 + +chr1 185439888 185439897 FOSL2_JUNB_MA1138.1 10.198002516013561 - +chr1 186194568 186194577 FOSL2_JUNB_MA1138.1 8.730108627391797 + +chr1 186194569 186194578 FOSL2_JUNB_MA1138.1 8.459276653602071 - +chr1 187337008 187337017 FOSL2_JUNB_MA1138.1 7.821161960787354 + +chr1 187337009 187337018 FOSL2_JUNB_MA1138.1 7.852539059539854 - +chr1 187948297 187948306 FOSL2_JUNB_MA1138.1 7.852539059539852 + +chr1 187948298 187948307 FOSL2_JUNB_MA1138.1 7.821161960787354 - +chr1 188027794 188027803 FOSL2_JUNB_MA1138.1 7.615016355936884 + +chr1 190759996 190760005 FOSL2_JUNB_MA1138.1 7.915820571337287 - +chr1 192517120 192517129 FOSL2_JUNB_MA1138.1 7.933969244436131 - +chr1 192531173 192531182 FOSL2_JUNB_MA1138.1 7.768086908918312 + +chr1 192531174 192531183 FOSL2_JUNB_MA1138.1 7.507977244372460 - +chr1 192531245 192531254 FOSL2_JUNB_MA1138.1 9.455856287275896 + +chr1 192531246 192531255 FOSL2_JUNB_MA1138.1 10.316393823104219 - +chr1 192545069 192545078 FOSL2_JUNB_MA1138.1 7.933969244436131 + +chr1 192546378 192546387 FOSL2_JUNB_MA1138.1 9.324860578614389 + +chr1 192546379 192546388 FOSL2_JUNB_MA1138.1 8.849118693213681 - +chr1 192551109 192551118 FOSL2_JUNB_MA1138.1 9.206074413348869 + +chr1 192559585 192559594 FOSL2_JUNB_MA1138.1 8.221753949999101 + +chr1 192983522 192983531 FOSL2_JUNB_MA1138.1 10.524168185652872 + +chr1 192983523 192983532 FOSL2_JUNB_MA1138.1 11.189535760503391 - +chr1 193059531 193059540 FOSL2_JUNB_MA1138.1 7.733407663027542 + +chr1 193105126 193105135 FOSL2_JUNB_MA1138.1 9.124644228452588 + +chr1 193105127 193105136 FOSL2_JUNB_MA1138.1 7.679945402113668 - +chr1 194796139 194796148 FOSL2_JUNB_MA1138.1 7.844865562805456 + +chr1 194796140 194796149 FOSL2_JUNB_MA1138.1 9.290065848376075 - +chr1 196951924 196951933 FOSL2_JUNB_MA1138.1 7.910774182153289 - +chr1 197776615 197776624 FOSL2_JUNB_MA1138.1 9.455856287275896 + +chr1 197776616 197776625 FOSL2_JUNB_MA1138.1 9.931598172676608 - +chr1 198167825 198167834 FOSL2_JUNB_MA1138.1 8.052360551526789 + +chr1 198253441 198253450 FOSL2_JUNB_MA1138.1 8.346289560145719 - +chr1 198253944 198253953 FOSL2_JUNB_MA1138.1 8.032128260549293 - +chr1 198353037 198353046 FOSL2_JUNB_MA1138.1 7.609969966752887 - +chr1 198520728 198520737 FOSL2_JUNB_MA1138.1 10.198002516013561 + +chr1 198520729 198520738 FOSL2_JUNB_MA1138.1 9.532634941163044 - +chr1 198598873 198598882 FOSL2_JUNB_MA1138.1 8.152882559345924 + +chr1 198598874 198598883 FOSL2_JUNB_MA1138.1 8.032128260549293 - +chr1 198641812 198641821 FOSL2_JUNB_MA1138.1 10.139372535225259 + +chr1 198641813 198641822 FOSL2_JUNB_MA1138.1 10.804740110075780 - +chr1 198734772 198734781 FOSL2_JUNB_MA1138.1 9.840651937703509 + +chr1 198734773 198734782 FOSL2_JUNB_MA1138.1 9.407447156499776 - +chr1 198937469 198937478 FOSL2_JUNB_MA1138.1 8.849118693213679 + +chr1 198937470 198937479 FOSL2_JUNB_MA1138.1 9.407447156499776 - +chr1 199152180 199152189 FOSL2_JUNB_MA1138.1 7.615016355936884 + +chr1 199172959 199172968 FOSL2_JUNB_MA1138.1 7.680921985295201 + +chr1 199173152 199173161 FOSL2_JUNB_MA1138.1 8.681923397172037 + +chr1 199272777 199272786 FOSL2_JUNB_MA1138.1 8.599336819286650 + +chr1 199273033 199273042 FOSL2_JUNB_MA1138.1 8.600493212275758 + +chr1 199273034 199273043 FOSL2_JUNB_MA1138.1 7.679945402113668 - +chr1 199308431 199308440 FOSL2_JUNB_MA1138.1 7.609969966752887 - +chr1 200154448 200154457 FOSL2_JUNB_MA1138.1 9.651026248253700 + +chr1 200154449 200154458 FOSL2_JUNB_MA1138.1 10.506019512554028 - +chr1 200207770 200207779 FOSL2_JUNB_MA1138.1 9.615221519048429 + +chr1 200207771 200207780 FOSL2_JUNB_MA1138.1 11.189535760503391 - +chr1 200653406 200653415 FOSL2_JUNB_MA1138.1 7.691400151649164 - +chr1 200654911 200654920 FOSL2_JUNB_MA1138.1 7.738575382901967 + +chr1 200654912 200654921 FOSL2_JUNB_MA1138.1 8.844072304029684 - +chr1 200866727 200866736 FOSL2_JUNB_MA1138.1 8.346289560145719 - +chr1 203650426 203650435 FOSL2_JUNB_MA1138.1 8.849118693213679 + +chr1 203650427 203650436 FOSL2_JUNB_MA1138.1 10.316393823104219 - +chr1 206050851 206050860 FOSL2_JUNB_MA1138.1 9.514486268064198 + +chr1 206050852 206050861 FOSL2_JUNB_MA1138.1 9.651026248253702 - +chr1 206556917 206556926 FOSL2_JUNB_MA1138.1 8.825923630930838 - +chr1 206685918 206685927 FOSL2_JUNB_MA1138.1 7.933969244436131 - +chr1 206925164 206925173 FOSL2_JUNB_MA1138.1 7.775760405652709 - +chr1 206930409 206930418 FOSL2_JUNB_MA1138.1 7.910774182153291 + +chr1 207337276 207337285 FOSL2_JUNB_MA1138.1 7.915820571337287 + +chr1 208187549 208187558 FOSL2_JUNB_MA1138.1 8.730108627391797 + +chr1 208187550 208187559 FOSL2_JUNB_MA1138.1 7.935125637425241 - +chr1 208604530 208604539 FOSL2_JUNB_MA1138.1 7.852539059539852 + +chr1 208604531 208604540 FOSL2_JUNB_MA1138.1 8.345312976964184 - +chr1 209039477 209039486 FOSL2_JUNB_MA1138.1 8.659493003763870 + +chr1 209039478 209039487 FOSL2_JUNB_MA1138.1 9.514486268064198 - +chr1 209039601 209039610 FOSL2_JUNB_MA1138.1 8.346289560145719 - +chr1 209607412 209607421 FOSL2_JUNB_MA1138.1 8.825923630930838 + +chr1 209607611 209607620 FOSL2_JUNB_MA1138.1 9.840651937703509 + +chr1 209607612 209607621 FOSL2_JUNB_MA1138.1 10.316393823104219 - +chr1 209627708 209627717 FOSL2_JUNB_MA1138.1 7.856966689992626 + +chr1 209627709 209627718 FOSL2_JUNB_MA1138.1 7.775760405652709 - +chr1 209673484 209673493 FOSL2_JUNB_MA1138.1 7.856966689992626 + +chr1 209673485 209673494 FOSL2_JUNB_MA1138.1 8.160556056080321 - +chr1 209747897 209747906 FOSL2_JUNB_MA1138.1 8.849118693213679 + +chr1 209747898 209747907 FOSL2_JUNB_MA1138.1 10.316393823104219 - +chr1 210332779 210332788 FOSL2_JUNB_MA1138.1 8.582714349876724 + +chr1 210332780 210332789 FOSL2_JUNB_MA1138.1 9.632877575154856 - +chr1 210374085 210374094 FOSL2_JUNB_MA1138.1 7.615016355936884 - +chr1 210374485 210374494 FOSL2_JUNB_MA1138.1 8.346289560145719 - +chr1 210464802 210464811 FOSL2_JUNB_MA1138.1 9.590870063776480 + +chr1 210685036 210685045 FOSL2_JUNB_MA1138.1 8.599336819286650 + +chr1 210696883 210696892 FOSL2_JUNB_MA1138.1 8.836398807295286 + +chr1 210696884 210696893 FOSL2_JUNB_MA1138.1 9.290065848376075 - +chr1 211416983 211416992 FOSL2_JUNB_MA1138.1 7.935125637425239 + +chr1 211416984 211416993 FOSL2_JUNB_MA1138.1 8.730108627391797 - +chr1 211515463 211515472 FOSL2_JUNB_MA1138.1 8.825923630930838 - +chr1 212559025 212559034 FOSL2_JUNB_MA1138.1 8.967510000304337 + +chr1 212559026 212559035 FOSL2_JUNB_MA1138.1 9.632877575154856 - +chr1 212567249 212567258 FOSL2_JUNB_MA1138.1 8.730108627391797 + +chr1 212567250 212567259 FOSL2_JUNB_MA1138.1 8.844072304029684 - +chr1 212567306 212567315 FOSL2_JUNB_MA1138.1 8.540706838498348 + +chr1 212596511 212596520 FOSL2_JUNB_MA1138.1 7.834390386441008 + +chr1 213051772 213051781 FOSL2_JUNB_MA1138.1 9.509439878880201 + +chr1 213104082 213104091 FOSL2_JUNB_MA1138.1 8.540706838498348 + +chr1 213623203 213623212 FOSL2_JUNB_MA1138.1 8.160556056080321 - +chr1 214439338 214439347 FOSL2_JUNB_MA1138.1 7.915820571337287 - +chr1 214525726 214525735 FOSL2_JUNB_MA1138.1 8.600493212275758 - +chr1 215878975 215878984 FOSL2_JUNB_MA1138.1 8.052360551526789 + +chr1 216006101 216006110 FOSL2_JUNB_MA1138.1 10.198002516013561 + +chr1 216006102 216006111 FOSL2_JUNB_MA1138.1 10.524168185652874 - +chr1 217275423 217275432 FOSL2_JUNB_MA1138.1 8.345312976964184 + +chr1 217275424 217275433 FOSL2_JUNB_MA1138.1 8.459276653602071 - +chr1 217323330 217323339 FOSL2_JUNB_MA1138.1 7.775760405652707 + +chr1 217482609 217482618 FOSL2_JUNB_MA1138.1 8.967510000304337 + +chr1 217482610 217482619 FOSL2_JUNB_MA1138.1 9.248081924727245 - +chr1 218377441 218377450 FOSL2_JUNB_MA1138.1 9.455856287275896 + +chr1 218377442 218377451 FOSL2_JUNB_MA1138.1 9.407447156499776 - +chr1 218377548 218377557 FOSL2_JUNB_MA1138.1 8.905270197948465 + +chr1 218377549 218377558 FOSL2_JUNB_MA1138.1 7.844865562805456 - +chr1 219089153 219089162 FOSL2_JUNB_MA1138.1 8.441127980503225 + +chr1 219189189 219189198 FOSL2_JUNB_MA1138.1 7.768086908918312 - diff --git a/demo/known_tfbs_chr1_hg38/FOSL2_JUNB_var.2__MA1139.1.bed b/demo/known_tfbs_chr1_hg38/FOSL2_JUNB_var.2__MA1139.1.bed new file mode 100644 index 0000000..a47a549 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/FOSL2_JUNB_var.2__MA1139.1.bed @@ -0,0 +1,200 @@ +chr1 778686 778697 FOSL2_JUNB_var.2__MA1139.1 9.938379135808546 + +chr1 778686 778697 FOSL2_JUNB_var.2__MA1139.1 9.931734594193630 - +chr1 778711 778722 FOSL2_JUNB_var.2__MA1139.1 10.493253260665515 + +chr1 778711 778722 FOSL2_JUNB_var.2__MA1139.1 10.493253260665515 - +chr1 1033067 1033078 FOSL2_JUNB_var.2__MA1139.1 8.412371725945876 + +chr1 1033067 1033078 FOSL2_JUNB_var.2__MA1139.1 8.372326786278906 - +chr1 1349442 1349453 FOSL2_JUNB_var.2__MA1139.1 8.025857084960546 + +chr1 1349442 1349453 FOSL2_JUNB_var.2__MA1139.1 7.988822523457228 - +chr1 1471681 1471692 FOSL2_JUNB_var.2__MA1139.1 6.902852279557111 + +chr1 1512065 1512076 FOSL2_JUNB_var.2__MA1139.1 6.902852279557111 + +chr1 6579998 6580009 FOSL2_JUNB_var.2__MA1139.1 7.714688754069179 + +chr1 6579998 6580009 FOSL2_JUNB_var.2__MA1139.1 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FOSL2_JUNB_var.2__MA1139.1 7.814540095474264 + +chr1 111203785 111203796 FOSL2_JUNB_var.2__MA1139.1 7.888094039573318 - +chr1 113929301 113929312 FOSL2_JUNB_var.2__MA1139.1 8.308316926456991 + +chr1 113929301 113929312 FOSL2_JUNB_var.2__MA1139.1 8.304414558425478 - +chr1 114581781 114581792 FOSL2_JUNB_var.2__MA1139.1 7.947166894915780 + +chr1 114581781 114581792 FOSL2_JUNB_var.2__MA1139.1 7.949958141917906 - +chr1 116737740 116737751 FOSL2_JUNB_var.2__MA1139.1 7.958949662776538 + +chr1 116737740 116737751 FOSL2_JUNB_var.2__MA1139.1 8.011627860080912 - +chr1 116738093 116738104 FOSL2_JUNB_var.2__MA1139.1 8.056618105322116 + +chr1 116738093 116738104 FOSL2_JUNB_var.2__MA1139.1 8.064373767966417 - +chr1 119140361 119140372 FOSL2_JUNB_var.2__MA1139.1 7.464362733796897 + +chr1 119140361 119140372 FOSL2_JUNB_var.2__MA1139.1 7.434345513568516 - +chr1 119267023 119267034 FOSL2_JUNB_var.2__MA1139.1 9.491537775218381 + +chr1 119267023 119267034 FOSL2_JUNB_var.2__MA1139.1 9.481365510341039 - 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FOSL2_JUND_MA1144.1 8.967808892607954 + +chr1 173355395 173355404 FOSL2_JUND_MA1144.1 8.956101354828414 - +chr1 174022481 174022490 FOSL2_JUND_MA1144.1 8.907704815918796 - +chr1 174815234 174815243 FOSL2_JUND_MA1144.1 9.338195370637333 + +chr1 174815235 174815244 FOSL2_JUND_MA1144.1 10.540684329112253 - +chr1 175023162 175023171 FOSL2_JUND_MA1144.1 8.240684577331018 - +chr1 178608207 178608216 FOSL2_JUND_MA1144.1 8.631871817879802 + +chr1 178608208 178608217 FOSL2_JUND_MA1144.1 9.369879901839973 - +chr1 179551518 179551527 FOSL2_JUND_MA1144.1 9.201028146798635 + +chr1 179551519 179551528 FOSL2_JUND_MA1144.1 8.239334281139516 - +chr1 181514377 181514386 FOSL2_JUND_MA1144.1 10.598614340513603 + +chr1 181514378 181514387 FOSL2_JUND_MA1144.1 11.327088951982040 - +chr1 181936866 181936875 FOSL2_JUND_MA1144.1 7.755786461641298 + +chr1 181936867 181936876 FOSL2_JUND_MA1144.1 8.547101763308042 - +chr1 182428205 182428214 FOSL2_JUND_MA1144.1 10.066669982105772 + +chr1 182428206 182428215 FOSL2_JUND_MA1144.1 9.328661898145601 - +chr1 183195255 183195264 FOSL2_JUND_MA1144.1 8.239334281139515 + +chr1 183195256 183195265 FOSL2_JUND_MA1144.1 9.684575966296849 - +chr1 183590531 183590540 FOSL2_JUND_MA1144.1 7.787470992843939 + +chr1 183590532 183590541 FOSL2_JUND_MA1144.1 8.472553535330198 - +chr1 183807976 183807985 FOSL2_JUND_MA1144.1 7.490083422719827 - +chr1 183841794 183841803 FOSL2_JUND_MA1144.1 7.695682384952143 + +chr1 183841795 183841804 FOSL2_JUND_MA1144.1 8.181404269738163 - +chr1 183956865 183956874 FOSL2_JUND_MA1144.1 7.697856450239946 - +chr1 184163858 184163867 FOSL2_JUND_MA1144.1 10.598614340513603 + +chr1 184163859 184163868 FOSL2_JUND_MA1144.1 11.327088951982040 - +chr1 184491715 184491724 FOSL2_JUND_MA1144.1 8.266954573097879 + +chr1 184491716 184491725 FOSL2_JUND_MA1144.1 8.982303894209696 - +chr1 184491981 184491990 FOSL2_JUND_MA1144.1 8.330299119935008 + +chr1 184649579 184649588 FOSL2_JUND_MA1144.1 8.631871817879802 + +chr1 184649580 184649589 FOSL2_JUND_MA1144.1 10.066669982105770 - +chr1 184867389 184867398 FOSL2_JUND_MA1144.1 10.146751052218027 + +chr1 184867390 184867399 FOSL2_JUND_MA1144.1 9.418276440749590 - +chr1 184892442 184892451 FOSL2_JUND_MA1144.1 9.418276440749588 + +chr1 184892443 184892452 FOSL2_JUND_MA1144.1 10.843541132483823 - +chr1 185439887 185439896 FOSL2_JUND_MA1144.1 9.418276440749588 + +chr1 185439888 185439897 FOSL2_JUND_MA1144.1 10.146751052218026 - +chr1 186194568 186194577 FOSL2_JUND_MA1144.1 8.967808892607954 + +chr1 186194569 186194578 FOSL2_JUND_MA1144.1 8.472553535330198 - +chr1 187337008 187337017 FOSL2_JUND_MA1144.1 7.830334689619145 + +chr1 187337009 187337018 FOSL2_JUND_MA1144.1 7.775763455064400 - +chr1 187948297 187948306 FOSL2_JUND_MA1144.1 7.775763455064398 + +chr1 187948298 187948307 FOSL2_JUND_MA1144.1 7.830334689619144 - +chr1 190759996 190760005 FOSL2_JUND_MA1144.1 7.553427969556955 - +chr1 192517120 192517129 FOSL2_JUND_MA1144.1 7.601824508466571 - +chr1 192531173 192531182 FOSL2_JUND_MA1144.1 7.490083422719827 + +chr1 192531245 192531254 FOSL2_JUND_MA1144.1 9.338195370637333 + +chr1 192531246 192531255 FOSL2_JUND_MA1144.1 10.540684329112253 - +chr1 192545069 192545078 FOSL2_JUND_MA1144.1 7.601824508466571 + +chr1 192546378 192546387 FOSL2_JUND_MA1144.1 9.360346429348240 + +chr1 192546379 192546388 FOSL2_JUND_MA1144.1 8.641405290371537 - +chr1 192551109 192551118 FOSL2_JUND_MA1144.1 9.027089200200805 + +chr1 192559585 192559594 FOSL2_JUND_MA1144.1 7.721884924333428 + +chr1 192983522 192983531 FOSL2_JUND_MA1144.1 10.598614340513603 + +chr1 192983523 192983532 FOSL2_JUND_MA1144.1 11.327088951982040 - +chr1 193105126 193105135 FOSL2_JUND_MA1144.1 9.201028146798635 + +chr1 193105127 193105136 FOSL2_JUND_MA1144.1 7.755786461641300 - +chr1 194796139 194796148 FOSL2_JUND_MA1144.1 7.570164492832081 + +chr1 194796140 194796149 FOSL2_JUND_MA1144.1 8.982303894209696 - +chr1 196951924 196951933 FOSL2_JUND_MA1144.1 7.868124034013831 - +chr1 197776615 197776624 FOSL2_JUND_MA1144.1 9.338195370637333 + +chr1 197776616 197776625 FOSL2_JUND_MA1144.1 10.057136509614036 - +chr1 198167825 198167834 FOSL2_JUND_MA1144.1 7.995757785360797 + +chr1 198253441 198253450 FOSL2_JUND_MA1144.1 8.594774743966502 - +chr1 198253944 198253953 FOSL2_JUND_MA1144.1 7.712351451841693 - +chr1 198520728 198520737 FOSL2_JUND_MA1144.1 10.146751052218027 + +chr1 198520729 198520738 FOSL2_JUND_MA1144.1 9.418276440749590 - +chr1 198598873 198598882 FOSL2_JUND_MA1144.1 7.973631242218042 + +chr1 198598874 198598883 FOSL2_JUND_MA1144.1 7.712351451841693 - +chr1 198622317 198622326 FOSL2_JUND_MA1144.1 7.852412763375629 + +chr1 198641812 198641821 FOSL2_JUND_MA1144.1 10.115066521015386 + +chr1 198641813 198641822 FOSL2_JUND_MA1144.1 10.843541132483823 - +chr1 198734772 198734781 FOSL2_JUND_MA1144.1 9.821743190135550 + +chr1 198734773 198734782 FOSL2_JUND_MA1144.1 9.403210126123446 - +chr1 198937469 198937478 FOSL2_JUND_MA1144.1 8.641405290371535 + +chr1 198937470 198937479 FOSL2_JUND_MA1144.1 9.403210126123446 - +chr1 199172959 199172968 FOSL2_JUND_MA1144.1 7.866300132498063 + +chr1 199173152 199173161 FOSL2_JUND_MA1144.1 8.373162816710215 + +chr1 199272777 199272786 FOSL2_JUND_MA1144.1 8.330299119935008 + +chr1 199273033 199273042 FOSL2_JUND_MA1144.1 8.547101763308044 + +chr1 199273034 199273043 FOSL2_JUND_MA1144.1 7.755786461641300 - +chr1 200154448 200154457 FOSL2_JUND_MA1144.1 9.812209717643816 + +chr1 200154449 200154458 FOSL2_JUND_MA1144.1 10.550217801603987 - +chr1 200207770 200207779 FOSL2_JUND_MA1144.1 9.461140137524795 + +chr1 200207771 200207780 FOSL2_JUND_MA1144.1 11.327088951982040 - +chr1 200654911 200654920 FOSL2_JUND_MA1144.1 7.787470992843939 + +chr1 200654912 200654921 FOSL2_JUND_MA1144.1 8.956101354828414 - +chr1 200866727 200866736 FOSL2_JUND_MA1144.1 8.594774743966502 - +chr1 203650426 203650435 FOSL2_JUND_MA1144.1 8.641405290371535 + +chr1 203650427 203650436 FOSL2_JUND_MA1144.1 10.540684329112253 - +chr1 206050851 206050860 FOSL2_JUND_MA1144.1 9.369879901839974 + +chr1 206050852 206050861 FOSL2_JUND_MA1144.1 9.812209717643817 - +chr1 206556917 206556926 FOSL2_JUND_MA1144.1 8.907704815918796 - +chr1 206685918 206685927 FOSL2_JUND_MA1144.1 7.601824508466571 - +chr1 206803435 206803444 FOSL2_JUND_MA1144.1 7.794482751974280 - +chr1 206925163 206925172 FOSL2_JUND_MA1144.1 7.697856450239948 + +chr1 206925164 206925173 FOSL2_JUND_MA1144.1 7.695682384952145 - +chr1 206930409 206930418 FOSL2_JUND_MA1144.1 7.868124034013831 + +chr1 207337276 207337285 FOSL2_JUND_MA1144.1 7.553427969556955 + +chr1 208187549 208187558 FOSL2_JUND_MA1144.1 8.967808892607954 + +chr1 208187550 208187559 FOSL2_JUND_MA1144.1 7.818627151839606 - +chr1 208604530 208604539 FOSL2_JUND_MA1144.1 7.775763455064398 + +chr1 208604531 208604540 FOSL2_JUND_MA1144.1 8.484261073109735 - +chr1 209039477 209039486 FOSL2_JUND_MA1144.1 8.631871817879802 + +chr1 209039478 209039487 FOSL2_JUND_MA1144.1 9.369879901839973 - +chr1 209039601 209039610 FOSL2_JUND_MA1144.1 8.594774743966502 - +chr1 209607412 209607421 FOSL2_JUND_MA1144.1 8.907704815918798 + +chr1 209607611 209607620 FOSL2_JUND_MA1144.1 9.821743190135550 + +chr1 209607612 209607621 FOSL2_JUND_MA1144.1 10.540684329112253 - +chr1 209627708 209627717 FOSL2_JUND_MA1144.1 8.181404269738165 + +chr1 209627709 209627718 FOSL2_JUND_MA1144.1 7.695682384952145 - +chr1 209673484 209673493 FOSL2_JUND_MA1144.1 8.181404269738165 + +chr1 209673485 209673494 FOSL2_JUND_MA1144.1 8.179230204450361 - +chr1 209747897 209747906 FOSL2_JUND_MA1144.1 8.641405290371535 + +chr1 209747898 209747907 FOSL2_JUND_MA1144.1 10.540684329112253 - +chr1 210332779 210332788 FOSL2_JUND_MA1144.1 8.551790747767546 + +chr1 210332780 210332789 FOSL2_JUND_MA1144.1 9.763813178734200 - +chr1 210374485 210374494 FOSL2_JUND_MA1144.1 8.594774743966502 - +chr1 210464802 210464811 FOSL2_JUND_MA1144.1 9.510637019699022 + +chr1 210685036 210685045 FOSL2_JUND_MA1144.1 8.330299119935008 + +chr1 210696883 210696892 FOSL2_JUND_MA1144.1 8.750502392596095 + +chr1 210696884 210696893 FOSL2_JUND_MA1144.1 8.982303894209696 - +chr1 211416983 211416992 FOSL2_JUND_MA1144.1 7.818627151839604 + +chr1 211416984 211416993 FOSL2_JUND_MA1144.1 8.967808892607952 - +chr1 211515463 211515472 FOSL2_JUND_MA1144.1 8.907704815918796 - +chr1 212559025 212559034 FOSL2_JUND_MA1144.1 9.035338567265763 + +chr1 212559026 212559035 FOSL2_JUND_MA1144.1 9.763813178734200 - +chr1 212567249 212567258 FOSL2_JUND_MA1144.1 8.967808892607954 + +chr1 212567250 212567259 FOSL2_JUND_MA1144.1 8.956101354828414 - +chr1 212567306 212567315 FOSL2_JUND_MA1144.1 8.298614588732368 + +chr1 212596511 212596520 FOSL2_JUND_MA1144.1 7.727366916154784 + +chr1 213051772 213051781 FOSL2_JUND_MA1144.1 9.684575966296851 + +chr1 213104082 213104091 FOSL2_JUND_MA1144.1 8.298614588732368 + +chr1 213623202 213623211 FOSL2_JUND_MA1144.1 7.697856450239948 + +chr1 213623203 213623212 FOSL2_JUND_MA1144.1 8.179230204450361 - +chr1 214439338 214439347 FOSL2_JUND_MA1144.1 7.553427969556955 - +chr1 214525726 214525735 FOSL2_JUND_MA1144.1 8.547101763308042 - +chr1 215878975 215878984 FOSL2_JUND_MA1144.1 7.995757785360797 + +chr1 216006101 216006110 FOSL2_JUND_MA1144.1 10.146751052218027 + +chr1 216006102 216006111 FOSL2_JUND_MA1144.1 10.598614340513604 - +chr1 217275423 217275432 FOSL2_JUND_MA1144.1 8.484261073109737 + +chr1 217275424 217275433 FOSL2_JUND_MA1144.1 8.472553535330198 - +chr1 217323330 217323339 FOSL2_JUND_MA1144.1 7.695682384952143 + +chr1 217323331 217323340 FOSL2_JUND_MA1144.1 7.697856450239946 - +chr1 217482609 217482618 FOSL2_JUND_MA1144.1 9.035338567265763 + +chr1 217482610 217482619 FOSL2_JUND_MA1144.1 9.280265359235983 - +chr1 217495495 217495504 FOSL2_JUND_MA1144.1 7.697856450239948 + +chr1 218377441 218377450 FOSL2_JUND_MA1144.1 9.338195370637333 + +chr1 218377442 218377451 FOSL2_JUND_MA1144.1 9.403210126123446 - +chr1 218377548 218377557 FOSL2_JUND_MA1144.1 8.498756074711480 + +chr1 218377549 218377558 FOSL2_JUND_MA1144.1 7.570164492832081 - +chr1 219089153 219089162 FOSL2_JUND_MA1144.1 8.424156996420582 + +chr1 219189189 219189198 FOSL2_JUND_MA1144.1 7.490083422719827 - +chr1 219325211 219325220 FOSL2_JUND_MA1144.1 8.005291257852532 - +chr1 219461330 219461339 FOSL2_JUND_MA1144.1 7.755786461641298 + +chr1 219461331 219461340 FOSL2_JUND_MA1144.1 8.504238066532835 - +chr1 220337506 220337515 FOSL2_JUND_MA1144.1 8.181404269738165 + diff --git a/demo/known_tfbs_chr1_hg38/FOSL2_JUND_var.2__MA1145.1.bed b/demo/known_tfbs_chr1_hg38/FOSL2_JUND_var.2__MA1145.1.bed new file mode 100644 index 0000000..3d7d419 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/FOSL2_JUND_var.2__MA1145.1.bed @@ -0,0 +1,200 @@ +chr1 778684 778698 FOSL2_JUND_var.2__MA1145.1 9.543275162020631 - +chr1 778685 778699 FOSL2_JUND_var.2__MA1145.1 10.717021820042159 + +chr1 778709 778723 FOSL2_JUND_var.2__MA1145.1 9.830957201403633 - +chr1 778710 778724 FOSL2_JUND_var.2__MA1145.1 11.423896339517686 + +chr1 1033065 1033079 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9.222197878903064 - +chr1 198734771 198734782 FOSL2_JUN_MA1130.1 9.994878075973750 + +chr1 198734772 198734783 FOSL2_JUN_MA1130.1 8.024820934375279 - +chr1 198937468 198937479 FOSL2_JUN_MA1130.1 9.460250011547506 + +chr1 198937469 198937480 FOSL2_JUN_MA1130.1 7.535272755360012 - +chr1 199173152 199173163 FOSL2_JUN_MA1130.1 8.749095736694928 - +chr1 199272777 199272788 FOSL2_JUN_MA1130.1 8.898473118497867 - +chr1 199273033 199273044 FOSL2_JUN_MA1130.1 8.571187245222905 - +chr1 200154447 200154458 FOSL2_JUN_MA1130.1 10.609179955672786 + +chr1 200154448 200154459 FOSL2_JUN_MA1130.1 9.034344565896081 - +chr1 200207769 200207780 FOSL2_JUN_MA1130.1 10.747490868115651 + +chr1 200207770 200207781 FOSL2_JUN_MA1130.1 9.048777893052391 - diff --git a/demo/known_tfbs_chr1_hg38/FOSL2_JUN_var.2__MA1131.1.bed b/demo/known_tfbs_chr1_hg38/FOSL2_JUN_var.2__MA1131.1.bed new file mode 100644 index 0000000..0ddc50b --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/FOSL2_JUN_var.2__MA1131.1.bed @@ -0,0 +1,202 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15524676 FOSL2_JUN_var.2__MA1131.1 7.387529594471573 - +chr1 15525040 15525050 FOSL2_JUN_var.2__MA1131.1 7.387529594471573 - +chr1 16441138 16441148 FOSL2_JUN_var.2__MA1131.1 8.098883983852915 + +chr1 16441139 16441149 FOSL2_JUN_var.2__MA1131.1 7.860992771948418 - +chr1 16514522 16514532 FOSL2_JUN_var.2__MA1131.1 8.578396873013016 - +chr1 16904950 16904960 FOSL2_JUN_var.2__MA1131.1 8.578396873013016 + +chr1 16904951 16904961 FOSL2_JUN_var.2__MA1131.1 8.098883983852911 - +chr1 17054028 17054038 FOSL2_JUN_var.2__MA1131.1 8.150084034469799 - +chr1 17536628 17536638 FOSL2_JUN_var.2__MA1131.1 7.381479882788316 + +chr1 17536629 17536639 FOSL2_JUN_var.2__MA1131.1 7.852024102971127 - +chr1 19210322 19210332 FOSL2_JUN_var.2__MA1131.1 7.907011195306399 + +chr1 21294760 21294770 FOSL2_JUN_var.2__MA1131.1 6.988796535645319 - +chr1 21783610 21783620 FOSL2_JUN_var.2__MA1131.1 7.810183189047152 + +chr1 21783611 21783621 FOSL2_JUN_var.2__MA1131.1 9.612020036879120 - +chr1 22052662 22052672 FOSL2_JUN_var.2__MA1131.1 8.150084034469799 + +chr1 23168877 23168887 FOSL2_JUN_var.2__MA1131.1 9.806033341594217 + +chr1 23168878 23168888 FOSL2_JUN_var.2__MA1131.1 8.422591272978838 - +chr1 24744979 24744989 FOSL2_JUN_var.2__MA1131.1 8.836618201918277 - +chr1 24965245 24965255 FOSL2_JUN_var.2__MA1131.1 6.992641656713656 - +chr1 26169844 26169854 FOSL2_JUN_var.2__MA1131.1 11.042919043493638 + +chr1 26169845 26169855 FOSL2_JUN_var.2__MA1131.1 11.470282491687517 - +chr1 27322136 27322146 FOSL2_JUN_var.2__MA1131.1 8.482375309048994 + +chr1 27660177 27660187 FOSL2_JUN_var.2__MA1131.1 7.385658976407367 + +chr1 27660178 27660188 FOSL2_JUN_var.2__MA1131.1 9.494207797383371 - +chr1 27773023 27773033 FOSL2_JUN_var.2__MA1131.1 11.769291813535528 + +chr1 27773024 27773034 FOSL2_JUN_var.2__MA1131.1 11.470282491687517 - +chr1 28648863 28648873 FOSL2_JUN_var.2__MA1131.1 8.261254088175683 + +chr1 31296926 31296936 FOSL2_JUN_var.2__MA1131.1 8.678534304281914 + +chr1 31296927 31296937 FOSL2_JUN_var.2__MA1131.1 9.612020036879120 - +chr1 31644871 31644881 FOSL2_JUN_var.2__MA1131.1 7.705187171914242 + +chr1 31644872 31644882 FOSL2_JUN_var.2__MA1131.1 9.806033341594217 - +chr1 31645226 31645236 FOSL2_JUN_var.2__MA1131.1 10.467554929751042 + +chr1 31645227 31645237 FOSL2_JUN_var.2__MA1131.1 8.051028117949738 - +chr1 31938253 31938263 FOSL2_JUN_var.2__MA1131.1 8.235400946723210 - +chr1 32394423 32394433 FOSL2_JUN_var.2__MA1131.1 7.666979467233319 + +chr1 32394424 32394434 FOSL2_JUN_var.2__MA1131.1 9.072231116220586 - +chr1 36089046 36089056 FOSL2_JUN_var.2__MA1131.1 7.423711264427910 - +chr1 36223815 36223825 FOSL2_JUN_var.2__MA1131.1 7.027018340042700 + +chr1 36223816 36223826 FOSL2_JUN_var.2__MA1131.1 8.119214100853679 - +chr1 36464441 36464451 FOSL2_JUN_var.2__MA1131.1 8.334374643500276 + +chr1 38991236 38991246 FOSL2_JUN_var.2__MA1131.1 9.210189464868495 + +chr1 38991237 38991247 FOSL2_JUN_var.2__MA1131.1 10.078540580103256 - +chr1 39026310 39026320 FOSL2_JUN_var.2__MA1131.1 8.265101641561225 - +chr1 39996002 39996012 FOSL2_JUN_var.2__MA1131.1 7.136898299508715 - +chr1 40386009 40386019 FOSL2_JUN_var.2__MA1131.1 9.551744005380691 + +chr1 40386010 40386020 FOSL2_JUN_var.2__MA1131.1 8.055817693307977 - +chr1 41623451 41623461 FOSL2_JUN_var.2__MA1131.1 8.000365472410373 + +chr1 41623452 41623462 FOSL2_JUN_var.2__MA1131.1 9.510956012437937 - +chr1 41662400 41662410 FOSL2_JUN_var.2__MA1131.1 7.100003975301984 + +chr1 41752156 41752166 FOSL2_JUN_var.2__MA1131.1 8.980227445023637 + +chr1 42456682 42456692 FOSL2_JUN_var.2__MA1131.1 7.830555838962924 + +chr1 44674287 44674297 FOSL2_JUN_var.2__MA1131.1 8.836618201918277 - +chr1 44800242 44800252 FOSL2_JUN_var.2__MA1131.1 7.251012631601277 + +chr1 45304131 45304141 FOSL2_JUN_var.2__MA1131.1 8.909738757242870 - +chr1 46719179 46719189 FOSL2_JUN_var.2__MA1131.1 10.795944681167853 + +chr1 46719180 46719190 FOSL2_JUN_var.2__MA1131.1 9.210189464868495 - +chr1 48472369 48472379 FOSL2_JUN_var.2__MA1131.1 8.331632220256180 + +chr1 48472370 48472380 FOSL2_JUN_var.2__MA1131.1 7.012040824686588 - +chr1 51284814 51284824 FOSL2_JUN_var.2__MA1131.1 7.471484910588091 - +chr1 51617071 51617081 FOSL2_JUN_var.2__MA1131.1 9.797064672616926 + +chr1 52703071 52703081 FOSL2_JUN_var.2__MA1131.1 7.136898299508715 - +chr1 53238541 53238551 FOSL2_JUN_var.2__MA1131.1 9.797064672616926 + +chr1 53890124 53890134 FOSL2_JUN_var.2__MA1131.1 7.287805857493330 - +chr1 54715939 54715949 FOSL2_JUN_var.2__MA1131.1 7.638587613098825 + +chr1 54764854 54764864 FOSL2_JUN_var.2__MA1131.1 7.319408580371149 - +chr1 56526721 56526731 FOSL2_JUN_var.2__MA1131.1 7.820103680690989 + +chr1 56526722 56526732 FOSL2_JUN_var.2__MA1131.1 7.316188097189418 - +chr1 57168185 57168195 FOSL2_JUN_var.2__MA1131.1 9.896038369393995 - +chr1 58784105 58784115 FOSL2_JUN_var.2__MA1131.1 7.187466578073216 + +chr1 58784106 58784116 FOSL2_JUN_var.2__MA1131.1 9.551744005380687 - +chr1 58784224 58784234 FOSL2_JUN_var.2__MA1131.1 8.151374128709666 + +chr1 59267109 59267119 FOSL2_JUN_var.2__MA1131.1 7.140983026152901 + +chr1 59267110 59267120 FOSL2_JUN_var.2__MA1131.1 9.510956012437937 - +chr1 60978618 60978628 FOSL2_JUN_var.2__MA1131.1 7.687459230216444 - +chr1 61725504 61725514 FOSL2_JUN_var.2__MA1131.1 8.500714555863535 - +chr1 63893266 63893276 FOSL2_JUN_var.2__MA1131.1 7.100003975301984 + +chr1 64172765 64172775 FOSL2_JUN_var.2__MA1131.1 7.820103680690989 + +chr1 64172766 64172776 FOSL2_JUN_var.2__MA1131.1 7.307219428212127 - +chr1 65393744 65393754 FOSL2_JUN_var.2__MA1131.1 7.564160649387914 + +chr1 66247783 66247793 FOSL2_JUN_var.2__MA1131.1 8.105731689840560 + +chr1 66276218 66276228 FOSL2_JUN_var.2__MA1131.1 8.105731689840558 - +chr1 66282440 66282450 FOSL2_JUN_var.2__MA1131.1 7.108972644279273 - +chr1 66350411 66350421 FOSL2_JUN_var.2__MA1131.1 7.480883871575547 - +chr1 66758493 66758503 FOSL2_JUN_var.2__MA1131.1 8.345858346178698 + +chr1 66758494 66758504 FOSL2_JUN_var.2__MA1131.1 7.666979467233317 - +chr1 67194474 67194484 FOSL2_JUN_var.2__MA1131.1 8.258975790573496 - +chr1 68181324 68181334 FOSL2_JUN_var.2__MA1131.1 8.046849024330687 + +chr1 68181325 68181335 FOSL2_JUN_var.2__MA1131.1 9.551744005380687 - +chr1 69737585 69737595 FOSL2_JUN_var.2__MA1131.1 7.579516864462088 + +chr1 70205690 70205700 FOSL2_JUN_var.2__MA1131.1 7.465296121078698 + +chr1 70355020 70355030 FOSL2_JUN_var.2__MA1131.1 8.183365987200983 + +chr1 70355042 70355052 FOSL2_JUN_var.2__MA1131.1 7.381479882788316 + +chr1 70355043 70355053 FOSL2_JUN_var.2__MA1131.1 8.578396873013016 - +chr1 70412276 70412286 FOSL2_JUN_var.2__MA1131.1 8.581349005826061 - +chr1 74714649 74714659 FOSL2_JUN_var.2__MA1131.1 7.523519870110317 - +chr1 74858034 74858044 FOSL2_JUN_var.2__MA1131.1 7.509028176681321 - +chr1 76331091 76331101 FOSL2_JUN_var.2__MA1131.1 7.198977672079051 + +chr1 77770783 77770793 FOSL2_JUN_var.2__MA1131.1 7.011430589545849 + +chr1 78655964 78655974 FOSL2_JUN_var.2__MA1131.1 7.349836682395984 - +chr1 79040948 79040958 FOSL2_JUN_var.2__MA1131.1 8.453800711933056 + +chr1 79742000 79742010 FOSL2_JUN_var.2__MA1131.1 8.253854674981749 - +chr1 81548855 81548865 FOSL2_JUN_var.2__MA1131.1 7.026313434525500 + +chr1 83501302 83501312 FOSL2_JUN_var.2__MA1131.1 7.950997799748194 - +chr1 84573604 84573614 FOSL2_JUN_var.2__MA1131.1 8.980227445023637 - +chr1 84620651 84620661 FOSL2_JUN_var.2__MA1131.1 7.016817976539720 + +chr1 85062201 85062211 FOSL2_JUN_var.2__MA1131.1 10.069571911125966 + +chr1 85062202 85062212 FOSL2_JUN_var.2__MA1131.1 10.078540580103256 - +chr1 87449358 87449368 FOSL2_JUN_var.2__MA1131.1 7.863271069550604 + +chr1 88867859 88867869 FOSL2_JUN_var.2__MA1131.1 8.496867002477991 + +chr1 88892039 88892049 FOSL2_JUN_var.2__MA1131.1 7.689737527818630 - +chr1 94721427 94721437 FOSL2_JUN_var.2__MA1131.1 7.458228084511421 + +chr1 94963097 94963107 FOSL2_JUN_var.2__MA1131.1 8.053696730318332 + +chr1 96966927 96966937 FOSL2_JUN_var.2__MA1131.1 8.453800711933054 - +chr1 99759279 99759289 FOSL2_JUN_var.2__MA1131.1 7.381479882788316 + +chr1 99759280 99759290 FOSL2_JUN_var.2__MA1131.1 8.578396873013016 - +chr1 100377842 100377852 FOSL2_JUN_var.2__MA1131.1 7.136797201194037 - +chr1 101178948 101178958 FOSL2_JUN_var.2__MA1131.1 7.013121419696782 + +chr1 101436135 101436145 FOSL2_JUN_var.2__MA1131.1 7.186025192295602 + +chr1 101438010 101438020 FOSL2_JUN_var.2__MA1131.1 7.394472228724278 + +chr1 107936232 107936242 FOSL2_JUN_var.2__MA1131.1 7.235770897971104 + +chr1 108692284 108692294 FOSL2_JUN_var.2__MA1131.1 8.192334656178273 - +chr1 108746594 108746604 FOSL2_JUN_var.2__MA1131.1 9.210189464868495 + +chr1 108746595 108746605 FOSL2_JUN_var.2__MA1131.1 10.795944681167853 - +chr1 108877340 108877350 FOSL2_JUN_var.2__MA1131.1 7.203904971541590 + +chr1 109984673 109984683 FOSL2_JUN_var.2__MA1131.1 10.795944681167853 + +chr1 109984674 109984684 FOSL2_JUN_var.2__MA1131.1 9.210189464868495 - +chr1 109984741 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186375620 FOSL2_MA0478.1 6.988868806796426 - +chr1 186849460 186849470 FOSL2_MA0478.1 7.009248547290643 + +chr1 187337009 187337019 FOSL2_MA0478.1 9.365864878524102 - +chr1 187948296 187948306 FOSL2_MA0478.1 9.365864878524102 + +chr1 187986891 187986901 FOSL2_MA0478.1 6.730326369332101 + +chr1 188027793 188027803 FOSL2_MA0478.1 7.114881092418146 + +chr1 190664186 190664196 FOSL2_MA0478.1 6.700868246762578 - +chr1 192531244 192531254 FOSL2_MA0478.1 8.582297351120433 + +chr1 192531246 192531256 FOSL2_MA0478.1 10.197388962020430 - +chr1 192546377 192546387 FOSL2_MA0478.1 10.146301295988360 + +chr1 192546379 192546389 FOSL2_MA0478.1 9.186752561377586 - +chr1 192808919 192808929 FOSL2_MA0478.1 7.583095140705304 - +chr1 192983521 192983531 FOSL2_MA0478.1 10.489519764372995 + +chr1 192983523 192983533 FOSL2_MA0478.1 10.724457386306909 - +chr1 193059530 193059540 FOSL2_MA0478.1 7.338362821174963 + +chr1 193105125 193105135 FOSL2_MA0478.1 9.342402657954823 + +chr1 194796140 194796150 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8.360138182586075 - +chr1 183841794 183841804 FOS_MA0476.1 8.011352798215468 + +chr1 183841794 183841804 FOS_MA0476.1 8.649020152464420 - +chr1 183956864 183956874 FOS_MA0476.1 9.624580746173322 - +chr1 184163858 184163868 FOS_MA0476.1 10.151979344224534 + +chr1 184163858 184163868 FOS_MA0476.1 10.380214320106580 - +chr1 184491715 184491725 FOS_MA0476.1 7.871501827637356 + +chr1 184491715 184491725 FOS_MA0476.1 8.150395343624073 - +chr1 184491981 184491991 FOS_MA0476.1 7.590213221931755 - +chr1 184649579 184649589 FOS_MA0476.1 7.905738473411753 + +chr1 184649579 184649589 FOS_MA0476.1 11.006824487462735 - +chr1 184867389 184867399 FOS_MA0476.1 10.290599001565777 + +chr1 184867389 184867399 FOS_MA0476.1 10.062364025683733 - +chr1 184892367 184892377 FOS_MA0476.1 7.683869763296394 - +chr1 184892442 184892452 FOS_MA0476.1 9.224777244382263 + +chr1 184892442 184892452 FOS_MA0476.1 10.635053365098750 - +chr1 185318042 185318052 FOS_MA0476.1 7.927039248073870 + +chr1 185318042 185318052 FOS_MA0476.1 7.831928440245640 - +chr1 185439887 185439897 FOS_MA0476.1 10.062364025683731 + +chr1 185439887 185439897 FOS_MA0476.1 10.290599001565777 - +chr1 185636877 185636887 FOS_MA0476.1 8.375776602606226 - +chr1 186178881 186178891 FOS_MA0476.1 8.293221568715815 - +chr1 186194568 186194578 FOS_MA0476.1 9.968058923434931 + +chr1 186194568 186194578 FOS_MA0476.1 7.639581675851487 - +chr1 187337008 187337018 FOS_MA0476.1 8.195286825716517 + +chr1 187337008 187337018 FOS_MA0476.1 7.253095463798719 - +chr1 187948297 187948307 FOS_MA0476.1 7.253095463798718 + +chr1 187948297 187948307 FOS_MA0476.1 8.195286825716517 - +chr1 187948476 187948486 FOS_MA0476.1 7.793581767629672 + +chr1 187987451 187987461 FOS_MA0476.1 9.137651195866095 - +chr1 188027794 188027804 FOS_MA0476.1 9.153272696163986 + +chr1 188027806 188027816 FOS_MA0476.1 8.534673683710755 + +chr1 192517119 192517129 FOS_MA0476.1 8.162902561346773 + +chr1 192531173 192531183 FOS_MA0476.1 8.201241101481546 + +chr1 192531245 192531255 FOS_MA0476.1 10.661724278995953 + +chr1 192531245 192531255 FOS_MA0476.1 8.340454000419337 - +chr1 192545069 192545079 FOS_MA0476.1 7.818448197813799 - +chr1 192546378 192546388 FOS_MA0476.1 8.971560230595266 + +chr1 192546378 192546388 FOS_MA0476.1 10.434135148047718 - +chr1 192559585 192559595 FOS_MA0476.1 9.338829978592429 + +chr1 192983522 192983532 FOS_MA0476.1 10.151979344224534 + +chr1 192983522 192983532 FOS_MA0476.1 10.380214320106580 - +chr1 193059531 193059541 FOS_MA0476.1 7.203127695017548 + +chr1 193105126 193105136 FOS_MA0476.1 7.147095103016800 + +chr1 193105126 193105136 FOS_MA0476.1 9.877797759960321 - +chr1 194796139 194796149 FOS_MA0476.1 7.527047464104383 + +chr1 194796139 194796149 FOS_MA0476.1 8.987982124925541 - +chr1 196951923 196951933 FOS_MA0476.1 8.126368504925074 + +chr1 197776615 197776625 FOS_MA0476.1 9.941002730279221 + +chr1 197776615 197776625 FOS_MA0476.1 8.478427812826771 - +chr1 198167825 198167835 FOS_MA0476.1 8.279834638718587 - +chr1 198168275 198168285 FOS_MA0476.1 8.296933212267174 - +chr1 198176270 198176280 FOS_MA0476.1 9.090067725845085 + +chr1 198253440 198253450 FOS_MA0476.1 8.176356336131079 + +chr1 198253943 198253953 FOS_MA0476.1 7.178097037751636 + +chr1 198253943 198253953 FOS_MA0476.1 7.806917166362464 - +chr1 198353036 198353046 FOS_MA0476.1 8.042094167275007 + +chr1 198520424 198520434 FOS_MA0476.1 8.471468713391854 - +chr1 198520728 198520738 FOS_MA0476.1 10.290599001565777 + +chr1 198520728 198520738 FOS_MA0476.1 10.062364025683733 - +chr1 198598873 198598883 FOS_MA0476.1 7.384577588877176 + +chr1 198598873 198598883 FOS_MA0476.1 7.690051933777728 - +chr1 198641812 198641822 FOS_MA0476.1 9.569231607915237 + +chr1 198641812 198641822 FOS_MA0476.1 9.797466583797283 - +chr1 198734772 198734782 FOS_MA0476.1 10.481718618068726 + +chr1 198937469 198937479 FOS_MA0476.1 10.275238066943185 + +chr1 199152180 199152190 FOS_MA0476.1 9.153272696163986 + +chr1 199173152 199173162 FOS_MA0476.1 7.775770504360199 - 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7.290631249498738 - +chr1 207337064 207337074 FOS_MA0476.1 8.158959399859741 - +chr1 208187549 208187559 FOS_MA0476.1 10.646748623631868 + +chr1 208604530 208604540 FOS_MA0476.1 10.943619517143834 - +chr1 209039477 209039487 FOS_MA0476.1 8.743325254713220 + +chr1 209039477 209039487 FOS_MA0476.1 10.662370123929762 - +chr1 209039600 209039610 FOS_MA0476.1 7.831901972598105 + +chr1 209607412 209607422 FOS_MA0476.1 8.218479194274817 + +chr1 209607412 209607422 FOS_MA0476.1 8.935026174173569 - +chr1 209607611 209607621 FOS_MA0476.1 10.523750466588519 + +chr1 209607611 209607621 FOS_MA0476.1 9.061175549136069 - +chr1 209627708 209627718 FOS_MA0476.1 8.649020152464420 + +chr1 209627708 209627718 FOS_MA0476.1 8.011352798215469 - +chr1 209627790 209627800 FOS_MA0476.1 8.155274223955916 + +chr1 209627790 209627800 FOS_MA0476.1 7.603693464363596 - +chr1 209673484 209673494 FOS_MA0476.1 9.369741701181152 + +chr1 209673484 209673494 FOS_MA0476.1 7.873378985808037 - +chr1 209747897 209747907 FOS_MA0476.1 10.317269915462980 + +chr1 209747897 209747907 FOS_MA0476.1 9.178040781720805 - +chr1 209756551 209756561 FOS_MA0476.1 7.202417773627348 - +chr1 210332779 210332789 FOS_MA0476.1 9.342685508025442 + +chr1 210332779 210332789 FOS_MA0476.1 8.712225122783321 - +chr1 210374084 210374094 FOS_MA0476.1 9.153272696163986 - +chr1 210374484 210374494 FOS_MA0476.1 8.038382523723644 + +chr1 210394390 210394400 FOS_MA0476.1 8.000062318755212 + +chr1 210464802 210464812 FOS_MA0476.1 7.679828540472558 - +chr1 210696883 210696893 FOS_MA0476.1 7.733528015229924 + +chr1 210696883 210696893 FOS_MA0476.1 8.871116892340805 - +chr1 211305330 211305340 FOS_MA0476.1 8.521456544597861 - +chr1 211416983 211416993 FOS_MA0476.1 10.646748623631868 - +chr1 211515462 211515472 FOS_MA0476.1 9.141506725299106 + +chr1 211515462 211515472 FOS_MA0476.1 8.101613961690081 - +chr1 212559025 212559035 FOS_MA0476.1 9.204711695618007 + +chr1 212559025 212559035 FOS_MA0476.1 9.432946671500053 - +chr1 212567249 212567259 FOS_MA0476.1 10.688780472151663 + +chr1 212567249 212567259 FOS_MA0476.1 7.501607863444052 - +chr1 212596350 212596360 FOS_MA0476.1 8.596935308076590 - +chr1 212596511 212596521 FOS_MA0476.1 7.853101562044746 + +chr1 213051772 213051782 FOS_MA0476.1 7.846708071910832 + +chr1 213051772 213051782 FOS_MA0476.1 10.254064945144080 - +chr1 213623202 213623212 FOS_MA0476.1 9.507715513588586 + +chr1 213623202 213623212 FOS_MA0476.1 7.152657437091305 - +chr1 214322161 214322171 FOS_MA0476.1 9.434522089378058 + +chr1 214525725 214525735 FOS_MA0476.1 10.212033096624285 + +chr1 215878975 215878985 FOS_MA0476.1 8.073354087593046 - +chr1 216006101 216006111 FOS_MA0476.1 10.173733768981041 + +chr1 216006101 216006111 FOS_MA0476.1 10.268844576809272 - +chr1 216702348 216702358 FOS_MA0476.1 9.137651195866095 + +chr1 217275423 217275433 FOS_MA0476.1 10.106032735842366 + diff --git a/demo/known_tfbs_chr1_hg38/FOXA1_MA0148.3.bed b/demo/known_tfbs_chr1_hg38/FOXA1_MA0148.3.bed new file mode 100644 index 0000000..481b1ac --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/FOXA1_MA0148.3.bed @@ -0,0 +1,349 @@ +chr1 1407716 1407730 FOXA1_MA0148.3 10.411404237217521 + +chr1 2291165 2291179 FOXA1_MA0148.3 7.119906325127991 + +chr1 3624781 3624795 FOXA1_MA0148.3 10.967861913490406 - +chr1 3656259 3656273 FOXA1_MA0148.3 8.394543373208910 + +chr1 3900344 3900358 FOXA1_MA0148.3 7.119230943038436 + +chr1 8182539 8182553 FOXA1_MA0148.3 11.629426305226950 + +chr1 8397487 8397501 FOXA1_MA0148.3 7.522688262596356 + +chr1 8427588 8427602 FOXA1_MA0148.3 7.260382195943198 - +chr1 8764213 8764227 FOXA1_MA0148.3 9.096888687682711 - +chr1 8764528 8764542 FOXA1_MA0148.3 7.531045130994510 - +chr1 8764560 8764574 FOXA1_MA0148.3 8.093638873724192 - +chr1 10985850 10985864 FOXA1_MA0148.3 8.142503865591154 - +chr1 11907927 11907941 FOXA1_MA0148.3 7.722163999674428 + +chr1 12040095 12040109 FOXA1_MA0148.3 7.806786288211537 - +chr1 12040099 12040113 FOXA1_MA0148.3 7.757560163632974 - +chr1 12040103 12040117 FOXA1_MA0148.3 7.970911344400641 - +chr1 13713221 13713235 FOXA1_MA0148.3 8.218055843419572 + +chr1 14599821 14599835 FOXA1_MA0148.3 8.505448781036765 - +chr1 15975966 15975980 FOXA1_MA0148.3 7.154793862467256 + +chr1 21294627 21294641 FOXA1_MA0148.3 8.611712421173900 - +chr1 21866246 21866260 FOXA1_MA0148.3 8.765570315774422 + +chr1 28172924 28172938 FOXA1_MA0148.3 8.698066034483649 - +chr1 28200096 28200110 FOXA1_MA0148.3 10.945173463383771 + +chr1 28506191 28506205 FOXA1_MA0148.3 10.456997224937473 + +chr1 28648376 28648390 FOXA1_MA0148.3 8.071944665052770 + +chr1 28927070 28927084 FOXA1_MA0148.3 10.823236890056839 - +chr1 28927208 28927222 FOXA1_MA0148.3 9.893492284489975 - +chr1 33127133 33127147 FOXA1_MA0148.3 10.541814735350496 - +chr1 34530622 34530636 FOXA1_MA0148.3 10.473073689875136 - +chr1 35641703 35641717 FOXA1_MA0148.3 10.003958911884443 + +chr1 37507974 37507988 FOXA1_MA0148.3 8.100432106173450 - +chr1 38475515 38475529 FOXA1_MA0148.3 9.619478886619277 + +chr1 40386068 40386082 FOXA1_MA0148.3 9.185230891318293 + +chr1 40450673 40450687 FOXA1_MA0148.3 7.491514173134668 - +chr1 40699436 40699450 FOXA1_MA0148.3 7.653339508528685 - +chr1 40699911 40699925 FOXA1_MA0148.3 8.022910041969595 + +chr1 41623415 41623429 FOXA1_MA0148.3 9.278103955189568 - +chr1 41623433 41623447 FOXA1_MA0148.3 11.640763339661813 - +chr1 41728895 41728909 FOXA1_MA0148.3 9.314349472505809 + +chr1 41868527 41868541 FOXA1_MA0148.3 8.239705967655389 + +chr1 44721596 44721610 FOXA1_MA0148.3 8.202392233450617 - +chr1 45544206 45544220 FOXA1_MA0148.3 7.412937940397574 - +chr1 51235697 51235711 FOXA1_MA0148.3 7.301838609732161 - +chr1 51491542 51491556 FOXA1_MA0148.3 10.077252293425941 - +chr1 51491624 51491638 FOXA1_MA0148.3 8.708692896300091 + +chr1 52056029 52056043 FOXA1_MA0148.3 8.110702880977845 - +chr1 52056694 52056708 FOXA1_MA0148.3 7.216325668585480 + +chr1 54376758 54376772 FOXA1_MA0148.3 7.426653586566909 + +chr1 57168111 57168125 FOXA1_MA0148.3 8.701770897292491 + +chr1 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116111290 FOXB1_MA0845.1 7.299445144775847 - +chr1 117001495 117001505 FOXB1_MA0845.1 7.429115690460047 - +chr1 117001590 117001600 FOXB1_MA0845.1 8.645587098860323 - +chr1 119267157 119267167 FOXB1_MA0845.1 9.133439889438973 - +chr1 119565463 119565473 FOXB1_MA0845.1 7.410380622194675 - +chr1 119662508 119662518 FOXB1_MA0845.1 8.081108871081492 + +chr1 119662707 119662717 FOXB1_MA0845.1 9.663343387382660 + +chr1 120942714 120942724 FOXB1_MA0845.1 7.207432053679706 - +chr1 121097393 121097403 FOXB1_MA0845.1 7.403929385558146 - +chr1 125168339 125168349 FOXB1_MA0845.1 7.442957740481661 - +chr1 125168365 125168375 FOXB1_MA0845.1 8.154585071974520 - +chr1 125180565 125180575 FOXB1_MA0845.1 7.442957740481661 - +chr1 125181898 125181908 FOXB1_MA0845.1 7.442957740481661 - +chr1 125183653 125183663 FOXB1_MA0845.1 7.442957740481661 - +chr1 143192428 143192438 FOXB1_MA0845.1 7.442957740481661 + +chr1 143194006 143194016 FOXB1_MA0845.1 8.154585071974521 + +chr1 143194194 143194204 FOXB1_MA0845.1 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FOXC1_MA0032.2 8.737353153772141 + +chr1 64956749 64956759 FOXC1_MA0032.2 8.918050048458289 + +chr1 65068594 65068604 FOXC1_MA0032.2 7.480198550151410 + +chr1 65254131 65254141 FOXC1_MA0032.2 9.802338854549914 + +chr1 65687986 65687996 FOXC1_MA0032.2 7.792243201694185 - +chr1 65959003 65959013 FOXC1_MA0032.2 8.511815853558133 - +chr1 66247876 66247886 FOXC1_MA0032.2 8.390361527864901 - +chr1 66282987 66282997 FOXC1_MA0032.2 7.833877958158104 - +chr1 66283493 66283503 FOXC1_MA0032.2 8.473091638583172 - +chr1 66301037 66301047 FOXC1_MA0032.2 8.073289453105755 - +chr1 66374882 66374892 FOXC1_MA0032.2 8.360547019563391 + +chr1 66380461 66380471 FOXC1_MA0032.2 7.733622792544236 + +chr1 66954648 66954658 FOXC1_MA0032.2 7.909532413227778 + +chr1 67112983 67112993 FOXC1_MA0032.2 9.441473033909027 - +chr1 67112987 67112997 FOXC1_MA0032.2 8.918050048458289 - +chr1 67194500 67194510 FOXC1_MA0032.2 7.833877958158104 + +chr1 67214403 67214413 FOXC1_MA0032.2 8.035616282926226 - +chr1 67214776 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194796316 FOXC1_MA0032.2 8.918050048458289 - +chr1 194796330 194796340 FOXC1_MA0032.2 9.541728199522895 - +chr1 194796334 194796344 FOXC1_MA0032.2 9.541728199522895 - +chr1 194830458 194830468 FOXC1_MA0032.2 8.156854572021722 - +chr1 195594450 195594460 FOXC1_MA0032.2 8.548795182613668 - +chr1 196373345 196373355 FOXC1_MA0032.2 9.676912676151618 + +chr1 196660970 196660980 FOXC1_MA0032.2 8.918050048458289 - +chr1 196661134 196661144 FOXC1_MA0032.2 11.037648605498305 - +chr1 196661310 196661320 FOXC1_MA0032.2 9.329798364133513 - +chr1 196743509 196743519 FOXC1_MA0032.2 9.902594020163781 + +chr1 196827938 196827948 FOXC1_MA0032.2 7.925117031549060 + +chr1 197145869 197145879 FOXC1_MA0032.2 9.304475693993064 - +chr1 197182321 197182331 FOXC1_MA0032.2 7.947257585375578 + +chr1 197182439 197182449 FOXC1_MA0032.2 9.541728199522895 - +chr1 197182443 197182453 FOXC1_MA0032.2 8.918050048458289 - +chr1 197201891 197201901 FOXC1_MA0032.2 10.300590827216224 - +chr1 198156992 198157002 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- +chr1 78620015 78620028 FOXF2_MA0030.1 8.960620539295341 - +chr1 79472403 79472416 FOXF2_MA0030.1 8.140713977129442 - +chr1 79777750 79777763 FOXF2_MA0030.1 6.958147233142634 - +chr1 80640878 80640891 FOXF2_MA0030.1 8.246086464771446 + +chr1 80641234 80641247 FOXF2_MA0030.1 6.471857328275759 + +chr1 83131575 83131588 FOXF2_MA0030.1 8.363857278443932 + +chr1 83500082 83500095 FOXF2_MA0030.1 10.698883782396894 - +chr1 84271587 84271600 FOXF2_MA0030.1 9.559467847129316 + +chr1 84480009 84480022 FOXF2_MA0030.1 10.415117486882689 + +chr1 84573436 84573449 FOXF2_MA0030.1 8.304429479592757 + +chr1 84574098 84574111 FOXF2_MA0030.1 8.255644632825824 + +chr1 84945743 84945756 FOXF2_MA0030.1 7.370207761073558 - +chr1 85298425 85298438 FOXF2_MA0030.1 7.071879039766424 + +chr1 85335178 85335191 FOXF2_MA0030.1 9.183765340574395 + +chr1 85756822 85756835 FOXF2_MA0030.1 8.661102950324608 + +chr1 85756873 85756886 FOXF2_MA0030.1 7.621521395706190 + +chr1 86016382 86016395 FOXF2_MA0030.1 6.848333751055621 - +chr1 86396465 86396478 FOXF2_MA0030.1 9.009809491477546 + +chr1 86396491 86396504 FOXF2_MA0030.1 8.997574472661638 - +chr1 87045586 87045599 FOXF2_MA0030.1 7.590665883842581 - +chr1 87151653 87151666 FOXF2_MA0030.1 6.427518511525621 + +chr1 87463911 87463924 FOXF2_MA0030.1 12.555175835283174 + +chr1 87588514 87588527 FOXF2_MA0030.1 11.014735675271945 - +chr1 87813268 87813281 FOXF2_MA0030.1 8.275445404332181 + +chr1 88701089 88701102 FOXF2_MA0030.1 9.078401352742832 - +chr1 89198986 89198999 FOXF2_MA0030.1 6.763993069532310 - +chr1 89719570 89719583 FOXF2_MA0030.1 7.286662022105880 - +chr1 89995336 89995349 FOXF2_MA0030.1 6.881203997263949 - +chr1 90509975 90509988 FOXF2_MA0030.1 8.643180865238755 - +chr1 91165635 91165648 FOXF2_MA0030.1 7.351202626561246 + +chr1 91166085 91166098 FOXF2_MA0030.1 8.940416537344426 + +chr1 91885698 91885711 FOXF2_MA0030.1 8.960620539295341 + +chr1 92080310 92080323 FOXF2_MA0030.1 7.776077523199584 + +chr1 92563924 92563937 FOXF2_MA0030.1 6.511078000219086 - +chr1 92784857 92784870 FOXF2_MA0030.1 8.884250653371163 + +chr1 92975667 92975680 FOXF2_MA0030.1 7.128047137985375 - +chr1 93846936 93846949 FOXF2_MA0030.1 7.265244816200171 + +chr1 93909877 93909890 FOXF2_MA0030.1 6.358530759027751 - +chr1 94962776 94962789 FOXF2_MA0030.1 9.653765219864662 + +chr1 95095962 95095975 FOXF2_MA0030.1 10.812211887349997 + +chr1 96966793 96966806 FOXF2_MA0030.1 6.771373265471961 + +chr1 97159606 97159619 FOXF2_MA0030.1 6.839580539421108 + +chr1 97462115 97462128 FOXF2_MA0030.1 7.889412592258033 + +chr1 97920633 97920646 FOXF2_MA0030.1 7.265253566094705 + +chr1 98989117 98989130 FOXF2_MA0030.1 7.157031213245947 + +chr1 99180417 99180430 FOXF2_MA0030.1 7.237874119826580 - +chr1 99759030 99759043 FOXF2_MA0030.1 7.274813276686407 - diff --git a/demo/known_tfbs_chr1_hg38/FOXG1_MA0613.1.bed b/demo/known_tfbs_chr1_hg38/FOXG1_MA0613.1.bed new file mode 100644 index 0000000..6781cd2 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/FOXG1_MA0613.1.bed @@ -0,0 +1,118 @@ +chr1 778475 778482 FOXG1_MA0613.1 8.300048881223240 + +chr1 1407719 1407726 FOXG1_MA0613.1 9.902945740987764 - +chr1 1678199 1678206 FOXG1_MA0613.1 8.300048881223239 - +chr1 1678205 1678212 FOXG1_MA0613.1 8.990197484161413 - +chr1 3656262 3656269 FOXG1_MA0613.1 9.500488178817827 - +chr1 8182542 8182549 FOXG1_MA0613.1 9.902945740987764 - +chr1 8283477 8283484 FOXG1_MA0613.1 9.392655046331351 - +chr1 8525684 8525691 FOXG1_MA0613.1 8.300048881223240 + +chr1 8764532 8764539 FOXG1_MA0613.1 9.392655046331353 + +chr1 10986020 10986027 FOXG1_MA0613.1 8.990197484161415 + +chr1 12436111 12436118 FOXG1_MA0613.1 9.392655046331353 + +chr1 14599825 14599832 FOXG1_MA0613.1 8.300048881223240 + +chr1 21294631 21294638 FOXG1_MA0613.1 8.300048881223240 + +chr1 28927074 28927081 FOXG1_MA0613.1 9.500488178817829 + +chr1 34530626 34530633 FOXG1_MA0613.1 9.902945740987766 + +chr1 34859990 34859997 FOXG1_MA0613.1 8.990197484161413 - +chr1 35506220 35506227 FOXG1_MA0613.1 8.810339575879652 - +chr1 36023662 36023669 FOXG1_MA0613.1 9.902945740987764 - +chr1 41623419 41623426 FOXG1_MA0613.1 9.392655046331353 + +chr1 41868530 41868537 FOXG1_MA0613.1 9.392655046331351 - +chr1 44632215 44632222 FOXG1_MA0613.1 9.902945740987764 - +chr1 44721529 44721536 FOXG1_MA0613.1 8.990197484161415 + +chr1 44721549 44721556 FOXG1_MA0613.1 9.500488178817827 - +chr1 44819466 44819473 FOXG1_MA0613.1 9.392655046331353 + +chr1 45491517 45491524 FOXG1_MA0613.1 8.810339575879654 + +chr1 51268457 51268464 FOXG1_MA0613.1 8.990197484161413 - +chr1 52056848 52056855 FOXG1_MA0613.1 9.902945740987764 - +chr1 53890058 53890065 FOXG1_MA0613.1 8.300048881223239 - +chr1 58996858 58996865 FOXG1_MA0613.1 9.902945740987766 + +chr1 59013892 59013899 FOXG1_MA0613.1 9.392655046331353 + +chr1 59013931 59013938 FOXG1_MA0613.1 9.392655046331351 - +chr1 59047006 59047013 FOXG1_MA0613.1 8.810339575879652 - +chr1 60281285 60281292 FOXG1_MA0613.1 8.990197484161413 - 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- +chr1 66397073 66397080 FOXG1_MA0613.1 9.392655046331351 - +chr1 66758129 66758136 FOXG1_MA0613.1 9.392655046331351 - +chr1 67112767 67112774 FOXG1_MA0613.1 8.300048881223240 + +chr1 67112983 67112990 FOXG1_MA0613.1 9.392655046331351 - +chr1 68443064 68443071 FOXG1_MA0613.1 8.990197484161415 + +chr1 68496513 68496520 FOXG1_MA0613.1 9.392655046331353 + +chr1 70354968 70354975 FOXG1_MA0613.1 9.392655046331353 + +chr1 74812170 74812177 FOXG1_MA0613.1 8.300048881223239 - +chr1 75745329 75745336 FOXG1_MA0613.1 9.392655046331353 + +chr1 75937260 75937267 FOXG1_MA0613.1 8.300048881223240 + +chr1 75937497 75937504 FOXG1_MA0613.1 8.300048881223240 + +chr1 75986175 75986182 FOXG1_MA0613.1 9.392655046331351 - +chr1 76191210 76191217 FOXG1_MA0613.1 8.990197484161413 - +chr1 76294589 76294596 FOXG1_MA0613.1 8.300048881223239 - +chr1 76331338 76331345 FOXG1_MA0613.1 9.392655046331353 + +chr1 77218870 77218877 FOXG1_MA0613.1 8.300048881223240 + +chr1 77219401 77219408 FOXG1_MA0613.1 9.500488178817827 - +chr1 78088301 78088308 FOXG1_MA0613.1 9.500488178817827 - +chr1 78620016 78620023 FOXG1_MA0613.1 8.810339575879652 - +chr1 79694850 79694857 FOXG1_MA0613.1 9.500488178817829 + +chr1 80640883 80640890 FOXG1_MA0613.1 9.902945740987766 + +chr1 80641278 80641285 FOXG1_MA0613.1 8.990197484161413 - +chr1 81549687 81549694 FOXG1_MA0613.1 9.902945740987766 + +chr1 81801289 81801296 FOXG1_MA0613.1 8.990197484161413 - +chr1 82979956 82979963 FOXG1_MA0613.1 9.902945740987766 + +chr1 83131170 83131177 FOXG1_MA0613.1 9.902945740987764 - +chr1 83131580 83131587 FOXG1_MA0613.1 9.392655046331353 + +chr1 83500083 83500090 FOXG1_MA0613.1 8.990197484161413 - +chr1 83500846 83500853 FOXG1_MA0613.1 8.990197484161413 - +chr1 83508427 83508434 FOXG1_MA0613.1 8.300048881223240 + +chr1 84271450 84271457 FOXG1_MA0613.1 8.300048881223239 - +chr1 84271592 84271599 FOXG1_MA0613.1 9.392655046331353 + +chr1 84480014 84480021 FOXG1_MA0613.1 9.902945740987766 + +chr1 84573441 84573448 FOXG1_MA0613.1 8.300048881223240 + +chr1 85298430 85298437 FOXG1_MA0613.1 8.810339575879654 + +chr1 85756827 85756834 FOXG1_MA0613.1 9.392655046331353 + +chr1 86396470 86396477 FOXG1_MA0613.1 9.500488178817829 + +chr1 86396492 86396499 FOXG1_MA0613.1 9.392655046331351 - +chr1 86913609 86913616 FOXG1_MA0613.1 8.810339575879654 + +chr1 87045587 87045594 FOXG1_MA0613.1 9.392655046331351 - +chr1 87052546 87052553 FOXG1_MA0613.1 9.500488178817829 + +chr1 87151658 87151665 FOXG1_MA0613.1 8.990197484161415 + +chr1 87463916 87463923 FOXG1_MA0613.1 9.392655046331353 + +chr1 87588243 87588250 FOXG1_MA0613.1 9.392655046331353 + +chr1 87588515 87588522 FOXG1_MA0613.1 9.392655046331351 - +chr1 88701090 88701097 FOXG1_MA0613.1 8.990197484161413 - +chr1 89299912 89299919 FOXG1_MA0613.1 8.300048881223240 + +chr1 89719571 89719578 FOXG1_MA0613.1 8.990197484161413 - +chr1 90509976 90509983 FOXG1_MA0613.1 9.392655046331351 - +chr1 90510058 90510065 FOXG1_MA0613.1 9.902945740987764 - +chr1 91165640 91165647 FOXG1_MA0613.1 8.810339575879654 + +chr1 91166090 91166097 FOXG1_MA0613.1 9.392655046331353 + +chr1 91885703 91885710 FOXG1_MA0613.1 8.810339575879654 + +chr1 92537628 92537635 FOXG1_MA0613.1 9.500488178817829 + +chr1 92784862 92784869 FOXG1_MA0613.1 9.500488178817829 + +chr1 93846941 93846948 FOXG1_MA0613.1 8.300048881223240 + +chr1 94962781 94962788 FOXG1_MA0613.1 8.810339575879654 + +chr1 94963264 94963271 FOXG1_MA0613.1 8.810339575879652 - +chr1 95095967 95095974 FOXG1_MA0613.1 9.392655046331353 + +chr1 97462120 97462127 FOXG1_MA0613.1 9.902945740987766 + +chr1 98989122 98989129 FOXG1_MA0613.1 8.300048881223240 + +chr1 99180418 99180425 FOXG1_MA0613.1 9.500488178817827 - +chr1 99759031 99759038 FOXG1_MA0613.1 8.990197484161413 - +chr1 100076450 100076457 FOXG1_MA0613.1 9.392655046331351 - +chr1 100265933 100265940 FOXG1_MA0613.1 8.300048881223240 + +chr1 101199496 101199503 FOXG1_MA0613.1 9.902945740987766 + +chr1 101222141 101222148 FOXG1_MA0613.1 9.392655046331353 + 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28088666 28088676 FOXH1_MA0479.1 10.849167010797935 + +chr1 32013574 32013584 FOXH1_MA0479.1 7.350579759520400 + +chr1 34859991 34860001 FOXH1_MA0479.1 7.402223402154994 - +chr1 37289157 37289167 FOXH1_MA0479.1 7.947647277174313 - +chr1 37508066 37508076 FOXH1_MA0479.1 9.089676681000984 + +chr1 37901542 37901552 FOXH1_MA0479.1 11.131776437491862 - +chr1 38173282 38173292 FOXH1_MA0479.1 7.457615600032723 + +chr1 39026940 39026950 FOXH1_MA0479.1 7.778817643164287 - +chr1 39799522 39799532 FOXH1_MA0479.1 7.124732927654563 - +chr1 39817298 39817308 FOXH1_MA0479.1 7.124732927654564 + +chr1 40232504 40232514 FOXH1_MA0479.1 7.099759869359326 + +chr1 40385877 40385887 FOXH1_MA0479.1 9.955099855484413 - +chr1 41751807 41751817 FOXH1_MA0479.1 10.486748513251822 + +chr1 42035549 42035559 FOXH1_MA0479.1 7.465260381989459 - +chr1 42924726 42924736 FOXH1_MA0479.1 8.309164944935267 - +chr1 45012232 45012242 FOXH1_MA0479.1 11.164504931060357 - +chr1 45491353 45491363 FOXH1_MA0479.1 9.025077095158609 + 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182249153 FOXP2_MA0593.1 10.208508397281724 + +chr1 182428002 182428012 FOXP2_MA0593.1 8.079345405962414 + +chr1 182588794 182588804 FOXP2_MA0593.1 9.396438505230270 + +chr1 183071089 183071099 FOXP2_MA0593.1 7.669942292785710 - +chr1 183481224 183481234 FOXP2_MA0593.1 7.124051995745362 - +chr1 183842604 183842614 FOXP2_MA0593.1 7.669942292785710 + +chr1 183897556 183897566 FOXP2_MA0593.1 7.669942292785710 + +chr1 183898120 183898130 FOXP2_MA0593.1 7.326184978982857 - +chr1 183956844 183956854 FOXP2_MA0593.1 7.524771211767668 + +chr1 184491793 184491803 FOXP2_MA0593.1 7.121256884283284 - +chr1 184755308 184755318 FOXP2_MA0593.1 8.281903863290228 - +chr1 184941765 184941775 FOXP2_MA0593.1 10.562838239585219 - +chr1 185156887 185156897 FOXP2_MA0593.1 8.079345405962414 + +chr1 185157681 185157691 FOXP2_MA0593.1 7.465014198086137 - +chr1 185318082 185318092 FOXP2_MA0593.1 8.344868890398834 + +chr1 185338792 185338802 FOXP2_MA0593.1 8.418321463061162 - +chr1 185440124 185440134 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194289743 Foxd3_MA0041.1 9.843870559580996 + +chr1 194477987 194477998 Foxd3_MA0041.1 7.638201029115512 - +chr1 194796284 194796295 Foxd3_MA0041.1 7.392591331164903 + +chr1 194796304 194796315 Foxd3_MA0041.1 8.955499693405015 + +chr1 194796308 194796319 Foxd3_MA0041.1 7.518735512217815 + +chr1 194796328 194796339 Foxd3_MA0041.1 10.267683472486988 + +chr1 194796332 194796343 Foxd3_MA0041.1 9.407483518450569 + +chr1 194830542 194830553 Foxd3_MA0041.1 9.218649520925226 + +chr1 194830887 194830898 Foxd3_MA0041.1 7.510368563308142 - +chr1 194831025 194831036 Foxd3_MA0041.1 7.250286796426501 - +chr1 194831674 194831685 Foxd3_MA0041.1 8.772361795331365 - +chr1 195195395 195195406 Foxd3_MA0041.1 8.021210645117520 + +chr1 195594448 195594459 Foxd3_MA0041.1 9.285786954182914 + +chr1 196217633 196217644 Foxd3_MA0041.1 7.369938126445534 - +chr1 196373124 196373135 Foxd3_MA0041.1 9.130104329915257 - +chr1 196373311 196373322 Foxd3_MA0041.1 8.108204213963107 - +chr1 196373346 196373357 Foxd3_MA0041.1 7.707292202144365 - +chr1 196660968 196660979 Foxd3_MA0041.1 7.392591331164903 + +chr1 196660972 196660983 Foxd3_MA0041.1 8.182893093586074 + +chr1 196661029 196661040 Foxd3_MA0041.1 10.941411840405134 - +chr1 196661132 196661143 Foxd3_MA0041.1 8.955499788101680 + +chr1 196827939 196827950 Foxd3_MA0041.1 8.833803129137360 - +chr1 197182437 197182448 Foxd3_MA0041.1 8.955499693405015 + +chr1 197182441 197182452 Foxd3_MA0041.1 9.407483518450569 + +chr1 197182445 197182456 Foxd3_MA0041.1 8.182893093586074 + +chr1 197201889 197201900 Foxd3_MA0041.1 7.540238595335598 + +chr1 197761920 197761931 Foxd3_MA0041.1 7.337298078719264 + +chr1 197762175 197762186 Foxd3_MA0041.1 7.775401270275476 - +chr1 197776336 197776347 Foxd3_MA0041.1 9.380382280282141 + +chr1 197776812 197776823 Foxd3_MA0041.1 11.714600512148790 - +chr1 197776816 197776827 Foxd3_MA0041.1 10.402416733066817 - +chr1 198156406 198156417 Foxd3_MA0041.1 7.479602613457666 + +chr1 198166273 198166284 Foxd3_MA0041.1 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205288155 Foxd3_MA0041.1 7.798055844035858 + +chr1 205288148 205288159 Foxd3_MA0041.1 10.448936045241418 + +chr1 205313666 205313677 Foxd3_MA0041.1 7.628649356846544 + +chr1 206925332 206925343 Foxd3_MA0041.1 7.730912899466174 - +chr1 207336421 207336432 Foxd3_MA0041.1 10.448936045241418 + +chr1 207336634 207336645 Foxd3_MA0041.1 7.930420389157051 + +chr1 207455068 207455079 Foxd3_MA0041.1 8.955500645782228 + +chr1 207822492 207822503 Foxd3_MA0041.1 9.117201105315278 - +chr1 207822496 207822507 Foxd3_MA0041.1 8.453043226329697 + +chr1 209769051 209769062 Foxd3_MA0041.1 7.695358945759473 + +chr1 209784950 209784961 Foxd3_MA0041.1 7.638200314834390 - +chr1 209828400 209828411 Foxd3_MA0041.1 8.321795704074198 + +chr1 210311255 210311266 Foxd3_MA0041.1 7.540231447270362 - +chr1 210464958 210464969 Foxd3_MA0041.1 7.672885894426602 + +chr1 211336065 211336076 Foxd3_MA0041.1 8.766667660146991 - +chr1 211518999 211519010 Foxd3_MA0041.1 7.350523683365018 - +chr1 211939567 211939578 Foxd3_MA0041.1 7.461595750037778 - +chr1 211939568 211939579 Foxd3_MA0041.1 8.408806986366962 - +chr1 211939827 211939838 Foxd3_MA0041.1 8.772363824539667 + +chr1 211939833 211939844 Foxd3_MA0041.1 10.402416733066817 + +chr1 211939922 211939933 Foxd3_MA0041.1 7.628649356846545 - +chr1 212586703 212586714 Foxd3_MA0041.1 7.462645508189992 - +chr1 212586707 212586718 Foxd3_MA0041.1 8.521055140248510 - +chr1 212596098 212596109 Foxd3_MA0041.1 8.121107287723877 - +chr1 212596117 212596128 Foxd3_MA0041.1 7.340949658203459 - +chr1 212596387 212596398 Foxd3_MA0041.1 9.561634853036569 + +chr1 212834064 212834075 Foxd3_MA0041.1 9.420387993045081 - +chr1 212873314 212873325 Foxd3_MA0041.1 8.801349311196230 - +chr1 213103676 213103687 Foxd3_MA0041.1 8.926514206748454 + +chr1 214558421 214558432 Foxd3_MA0041.1 7.397039364613962 - +chr1 214603709 214603720 Foxd3_MA0041.1 7.260911115452321 + +chr1 215568384 215568395 Foxd3_MA0041.1 7.521488473024933 + +chr1 215710534 215710545 Foxd3_MA0041.1 9.815699742138099 - +chr1 217027549 217027560 Foxd3_MA0041.1 8.099842681662551 - +chr1 217275842 217275853 Foxd3_MA0041.1 8.090184045183282 + +chr1 217323258 217323269 Foxd3_MA0041.1 12.002282346505490 - +chr1 217323266 217323277 Foxd3_MA0041.1 7.749260263257296 + +chr1 217495751 217495762 Foxd3_MA0041.1 7.919370930710552 + +chr1 218284964 218284975 Foxd3_MA0041.1 10.019425271528732 - +chr1 219090752 219090763 Foxd3_MA0041.1 9.140093429783381 - +chr1 219091031 219091042 Foxd3_MA0041.1 8.155209783492932 - +chr1 219174846 219174857 Foxd3_MA0041.1 9.545552496283323 - +chr1 219188791 219188802 Foxd3_MA0041.1 7.479602613457666 + +chr1 219188906 219188917 Foxd3_MA0041.1 7.896912973799005 - +chr1 219188997 219189008 Foxd3_MA0041.1 7.643900015456055 + +chr1 219189238 219189249 Foxd3_MA0041.1 7.677427586726024 - +chr1 219460926 219460937 Foxd3_MA0041.1 8.754833724643946 - +chr1 219461160 219461171 Foxd3_MA0041.1 7.879945623222326 - +chr1 219461212 219461223 Foxd3_MA0041.1 8.063955621017644 + 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221046558 Foxd3_MA0041.1 11.714600512148790 - +chr1 221046551 221046562 Foxd3_MA0041.1 10.402416733066817 - +chr1 221046557 221046568 Foxd3_MA0041.1 7.992206195019249 - +chr1 221046561 221046572 Foxd3_MA0041.1 8.154724776128251 - +chr1 221046841 221046852 Foxd3_MA0041.1 8.108204213963107 + +chr1 221069580 221069591 Foxd3_MA0041.1 7.461578428900598 + +chr1 221157370 221157381 Foxd3_MA0041.1 8.262354298554575 + +chr1 221157427 221157438 Foxd3_MA0041.1 7.302799324146831 + +chr1 221203690 221203701 Foxd3_MA0041.1 9.967099365907522 + +chr1 221643846 221643857 Foxd3_MA0041.1 8.679652746928573 - +chr1 221644108 221644119 Foxd3_MA0041.1 8.290524163620262 + +chr1 221754275 221754286 Foxd3_MA0041.1 7.404437178635288 - +chr1 221754796 221754807 Foxd3_MA0041.1 8.188264251926286 - +chr1 221754800 221754811 Foxd3_MA0041.1 10.535948185214730 - +chr1 221777362 221777373 Foxd3_MA0041.1 8.366032241654256 + +chr1 221778381 221778392 Foxd3_MA0041.1 7.367338388433467 + +chr1 222096239 222096250 Foxd3_MA0041.1 7.252556760978898 - +chr1 222583187 222583198 Foxd3_MA0041.1 8.262354298554575 - +chr1 222732446 222732457 Foxd3_MA0041.1 9.911794201494544 + +chr1 222732573 222732584 Foxd3_MA0041.1 8.504098034980837 + +chr1 222733040 222733051 Foxd3_MA0041.1 8.246276500729895 + +chr1 222773414 222773425 Foxd3_MA0041.1 7.759898034399916 - +chr1 223363950 223363961 Foxd3_MA0041.1 7.461595750037778 - +chr1 223363951 223363962 Foxd3_MA0041.1 8.408806986366962 - +chr1 223551132 223551143 Foxd3_MA0041.1 10.673147985357943 + +chr1 223551136 223551147 Foxd3_MA0041.1 7.992206195019249 + +chr1 223551149 223551160 Foxd3_MA0041.1 9.842801837987077 + +chr1 223698349 223698360 Foxd3_MA0041.1 7.609214370931197 - +chr1 223771785 223771796 Foxd3_MA0041.1 10.644160469493078 + +chr1 224182842 224182853 Foxd3_MA0041.1 8.262354596171894 - +chr1 224624028 224624039 Foxd3_MA0041.1 7.260911115452321 - +chr1 224783114 224783125 Foxd3_MA0041.1 8.023133187510624 + +chr1 224922747 224922758 Foxd3_MA0041.1 8.859373077624129 - diff --git a/demo/known_tfbs_chr1_hg38/Foxj2_MA0614.1.bed b/demo/known_tfbs_chr1_hg38/Foxj2_MA0614.1.bed new file mode 100644 index 0000000..edaf959 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/Foxj2_MA0614.1.bed @@ -0,0 +1,118 @@ +chr1 827520 827527 Foxj2_MA0614.1 8.218702321409568 + +chr1 1407719 1407726 Foxj2_MA0614.1 9.572775713053229 - +chr1 1678205 1678212 Foxj2_MA0614.1 8.082976929999319 - +chr1 3656262 3656269 Foxj2_MA0614.1 8.237437439402921 - +chr1 8182542 8182549 Foxj2_MA0614.1 9.572775713053229 - +chr1 8283477 8283484 Foxj2_MA0614.1 9.418315203649625 - +chr1 8764532 8764539 Foxj2_MA0614.1 9.418315203649627 + +chr1 10985582 10985589 Foxj2_MA0614.1 8.218702321409566 - +chr1 10986020 10986027 Foxj2_MA0614.1 8.082976929999319 + +chr1 12436111 12436118 Foxj2_MA0614.1 9.418315203649627 + +chr1 12449482 12449489 Foxj2_MA0614.1 8.064241812005966 + +chr1 15975969 15975976 Foxj2_MA0614.1 8.218702321409566 - +chr1 25022805 25022812 Foxj2_MA0614.1 8.064241812005966 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8.901442151359594 - +chr1 114581965 114581982 GATA1_TAL1_MA0140.2 7.252826421530719 - +chr1 114757307 114757324 GATA1_TAL1_MA0140.2 8.488077347474562 + +chr1 116288245 116288262 GATA1_TAL1_MA0140.2 6.851627753656719 - +chr1 116504212 116504229 GATA1_TAL1_MA0140.2 9.124840752613391 - +chr1 119266696 119266713 GATA1_TAL1_MA0140.2 6.812529321325577 - diff --git a/demo/known_tfbs_chr1_hg38/GATA2_MA0036.3.bed b/demo/known_tfbs_chr1_hg38/GATA2_MA0036.3.bed new file mode 100644 index 0000000..8f888db --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/GATA2_MA0036.3.bed @@ -0,0 +1,117 @@ +chr1 1505047 1505057 GATA2_MA0036.3 7.556347403125479 - +chr1 1505302 1505312 GATA2_MA0036.3 7.521446981480988 + +chr1 2585947 2585957 GATA2_MA0036.3 9.236252395106076 + +chr1 12162050 12162060 GATA2_MA0036.3 9.069198311616233 - +chr1 16567149 16567159 GATA2_MA0036.3 8.027769669679305 + +chr1 22025312 22025322 GATA2_MA0036.3 7.845435387021443 - +chr1 22026013 22026023 GATA2_MA0036.3 9.444172264938858 + +chr1 22039790 22039800 GATA2_MA0036.3 9.790362249100982 - +chr1 23540034 23540044 GATA2_MA0036.3 9.456473299103088 + +chr1 26378613 26378623 GATA2_MA0036.3 9.236252395106076 + +chr1 26620776 26620786 GATA2_MA0036.3 9.320556210370738 - +chr1 27659583 27659593 GATA2_MA0036.3 8.981287605662267 - +chr1 28172832 28172842 GATA2_MA0036.3 7.779832574105642 + +chr1 28172863 28172873 GATA2_MA0036.3 8.606313652339642 + +chr1 31155218 31155228 GATA2_MA0036.3 7.870163787533773 + +chr1 31549146 31549156 GATA2_MA0036.3 9.551137268888995 + +chr1 33127555 33127565 GATA2_MA0036.3 9.424135421691552 + +chr1 36224563 36224573 GATA2_MA0036.3 9.607921652026622 + +chr1 37507908 37507918 GATA2_MA0036.3 7.590632388162978 - +chr1 39576711 39576721 GATA2_MA0036.3 8.076016445539700 + +chr1 40531855 40531865 GATA2_MA0036.3 7.461683433339571 - +chr1 44819420 44819430 GATA2_MA0036.3 7.465122208407167 + +chr1 45011439 45011449 GATA2_MA0036.3 9.058820400237177 + +chr1 45011535 45011545 GATA2_MA0036.3 7.659926614446295 + 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- +chr1 64172206 64172216 GATA2_MA0036.3 7.779726259689143 + +chr1 64223995 64224005 GATA2_MA0036.3 7.628518299847623 - +chr1 65215854 65215864 GATA2_MA0036.3 7.551293577613745 + +chr1 65688000 65688010 GATA2_MA0036.3 8.678524978480713 + +chr1 66365216 66365226 GATA2_MA0036.3 9.125982694753860 + +chr1 66397178 66397188 GATA2_MA0036.3 7.761025257340282 - +chr1 66648920 66648930 GATA2_MA0036.3 8.315135111335186 - +chr1 66758403 66758413 GATA2_MA0036.3 7.838074833200071 + +chr1 67214460 67214470 GATA2_MA0036.3 7.463100879877445 - +chr1 70504752 70504762 GATA2_MA0036.3 8.985457590079445 - +chr1 71081541 71081551 GATA2_MA0036.3 9.043080591005355 - +chr1 72432873 72432883 GATA2_MA0036.3 8.424877736359461 - +chr1 72433390 72433400 GATA2_MA0036.3 7.574892578931156 + +chr1 74714209 74714219 GATA2_MA0036.3 9.149457776350685 + +chr1 74812171 74812181 GATA2_MA0036.3 7.521906591544794 + +chr1 74824714 74824724 GATA2_MA0036.3 7.607493774681814 + +chr1 75784566 75784576 GATA2_MA0036.3 9.149498205769612 - +chr1 75785577 75785587 GATA2_MA0036.3 8.365585572864580 - +chr1 75796594 75796604 GATA2_MA0036.3 9.157391009352532 - +chr1 75937661 75937671 GATA2_MA0036.3 8.595097123172302 + +chr1 75981315 75981325 GATA2_MA0036.3 9.184735933395125 + +chr1 75986176 75986186 GATA2_MA0036.3 7.521906591544794 + +chr1 77413593 77413603 GATA2_MA0036.3 9.540171538905133 + +chr1 77926945 77926955 GATA2_MA0036.3 9.090206042274732 - +chr1 78004573 78004583 GATA2_MA0036.3 7.540607593893656 + +chr1 78145308 78145318 GATA2_MA0036.3 7.686939346504915 + +chr1 78333703 78333713 GATA2_MA0036.3 7.494509194476118 - +chr1 79041160 79041170 GATA2_MA0036.3 7.784500338937105 - +chr1 79052918 79052928 GATA2_MA0036.3 7.845435387021443 - +chr1 79053178 79053188 GATA2_MA0036.3 10.070806311303214 + +chr1 79260374 79260384 GATA2_MA0036.3 9.607608785798243 + +chr1 79469272 79469282 GATA2_MA0036.3 7.788651003883816 + +chr1 79519463 79519473 GATA2_MA0036.3 9.540171538905133 + +chr1 79694696 79694706 GATA2_MA0036.3 9.487841184282832 - +chr1 79694701 79694711 GATA2_MA0036.3 8.986626830953917 - +chr1 79741963 79741973 GATA2_MA0036.3 9.459912074170681 - +chr1 83485953 83485963 GATA2_MA0036.3 9.043080591005355 + +chr1 83508714 83508724 GATA2_MA0036.3 7.612778490615799 + +chr1 84090963 84090973 GATA2_MA0036.3 10.070806311303214 + +chr1 84152816 84152826 GATA2_MA0036.3 8.538794790399793 + +chr1 84271588 84271598 GATA2_MA0036.3 7.521906591544794 - +chr1 84599540 84599550 GATA2_MA0036.3 8.238741076519968 - +chr1 85027754 85027764 GATA2_MA0036.3 8.482010407262164 - +chr1 86755976 86755986 GATA2_MA0036.3 9.311737780592566 + +chr1 87058112 87058122 GATA2_MA0036.3 8.308801189726953 + +chr1 87203115 87203125 GATA2_MA0036.3 9.304816401138915 + +chr1 87450024 87450034 GATA2_MA0036.3 8.734452986972247 - +chr1 88701399 88701409 GATA2_MA0036.3 9.449551919649435 + +chr1 89693630 89693640 GATA2_MA0036.3 7.613131786263106 + +chr1 89694355 89694365 GATA2_MA0036.3 9.456473299103088 - +chr1 89763118 89763128 GATA2_MA0036.3 8.594784256943925 - +chr1 90509493 90509503 GATA2_MA0036.3 7.551293577613745 + +chr1 91804903 91804913 GATA2_MA0036.3 8.012029860447480 + +chr1 96955118 96955128 GATA2_MA0036.3 7.948908283925759 - +chr1 96955627 96955637 GATA2_MA0036.3 8.466270598030343 + +chr1 97158927 97158937 GATA2_MA0036.3 8.365585572864580 - +chr1 97164164 97164174 GATA2_MA0036.3 8.076016445539700 - +chr1 97461635 97461645 GATA2_MA0036.3 9.125982694753860 - +chr1 99752169 99752179 GATA2_MA0036.3 8.538794790399793 + +chr1 99758897 99758907 GATA2_MA0036.3 9.392727107092881 - +chr1 99759069 99759079 GATA2_MA0036.3 7.772804880235494 + +chr1 99786784 99786794 GATA2_MA0036.3 8.308801189726953 - +chr1 100076941 100076951 GATA2_MA0036.3 7.685343112404178 + +chr1 101389389 101389399 GATA2_MA0036.3 8.595935740960586 + +chr1 101445280 101445290 GATA2_MA0036.3 7.704240874202655 - +chr1 103106607 103106617 GATA2_MA0036.3 9.307867938146799 + +chr1 103106922 103106932 GATA2_MA0036.3 7.795572383337466 + 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/dev/null +++ b/demo/known_tfbs_chr1_hg38/GATA6_MA1104.1.bed @@ -0,0 +1,118 @@ +chr1 1505046 1505058 GATA6_MA1104.1 7.934670111147800 + +chr1 1505341 1505353 GATA6_MA1104.1 7.763523397142153 - +chr1 2585946 2585958 GATA6_MA1104.1 8.251090425272782 - +chr1 8182953 8182965 GATA6_MA1104.1 7.679492946388655 + +chr1 8764096 8764108 GATA6_MA1104.1 7.550696480358921 - +chr1 12162049 12162061 GATA6_MA1104.1 8.361909482430393 + +chr1 16544765 16544777 GATA6_MA1104.1 7.999416153296685 - +chr1 16567148 16567160 GATA6_MA1104.1 7.383677391231113 - +chr1 16728509 16728521 GATA6_MA1104.1 7.999416153296685 + +chr1 22026012 22026024 GATA6_MA1104.1 9.137469852314007 - +chr1 22039789 22039801 GATA6_MA1104.1 10.343801583582863 + +chr1 23540033 23540045 GATA6_MA1104.1 9.787984214345546 - +chr1 26378612 26378624 GATA6_MA1104.1 8.546313006162753 - +chr1 26620775 26620787 GATA6_MA1104.1 9.172731714445005 + +chr1 26890254 26890266 GATA6_MA1104.1 7.992659747468362 + +chr1 27659582 27659594 GATA6_MA1104.1 8.463130515434045 + +chr1 28172831 28172843 GATA6_MA1104.1 7.521368855726210 - +chr1 28172862 28172874 GATA6_MA1104.1 8.898117608675435 - +chr1 31549145 31549157 GATA6_MA1104.1 10.313802609386103 - +chr1 33127554 33127566 GATA6_MA1104.1 8.802811501175389 - +chr1 36224562 36224574 GATA6_MA1104.1 11.040674959507150 - +chr1 37507907 37507919 GATA6_MA1104.1 7.313233543985130 + +chr1 39576710 39576722 GATA6_MA1104.1 8.599214648636888 - +chr1 39666966 39666978 GATA6_MA1104.1 7.579886684260762 - +chr1 40257864 40257876 GATA6_MA1104.1 7.870203873795442 + +chr1 45011438 45011450 GATA6_MA1104.1 8.160250684906361 - +chr1 45011534 45011546 GATA6_MA1104.1 7.673073774183748 - +chr1 45584040 45584052 GATA6_MA1104.1 7.297982140524826 - +chr1 45687569 45687581 GATA6_MA1104.1 9.838483925161860 + +chr1 48236979 48236991 GATA6_MA1104.1 9.778002152271272 - +chr1 50724579 50724591 GATA6_MA1104.1 7.377023819357119 + +chr1 50977520 50977532 GATA6_MA1104.1 7.384775481120629 - +chr1 50977525 50977537 GATA6_MA1104.1 7.383035509689575 - +chr1 51268065 51268077 GATA6_MA1104.1 7.194527857430635 - +chr1 51285439 51285451 GATA6_MA1104.1 8.008006564412756 - +chr1 52552720 52552732 GATA6_MA1104.1 9.259790950847430 - +chr1 54406825 54406837 GATA6_MA1104.1 9.235782686933650 - +chr1 54406874 54406886 GATA6_MA1104.1 8.108221978568869 - +chr1 54764878 54764890 GATA6_MA1104.1 7.513809810797337 - +chr1 54886981 54886993 GATA6_MA1104.1 8.542428570790058 + +chr1 56516572 56516584 GATA6_MA1104.1 8.420987233397444 - +chr1 58392180 58392192 GATA6_MA1104.1 8.251628814150219 + +chr1 58784068 58784080 GATA6_MA1104.1 7.382343929339318 - +chr1 59266764 59266776 GATA6_MA1104.1 8.065585594415335 - +chr1 60391285 60391297 GATA6_MA1104.1 7.314973515416184 + +chr1 60391331 60391343 GATA6_MA1104.1 8.469582353295873 + +chr1 60391520 60391532 GATA6_MA1104.1 7.984794970496640 - +chr1 60978814 60978826 GATA6_MA1104.1 8.013167768014668 + +chr1 61725542 61725554 GATA6_MA1104.1 10.056861110056541 + +chr1 62801045 62801057 GATA6_MA1104.1 8.194227878401930 + +chr1 64172205 64172217 GATA6_MA1104.1 8.657523268943297 - +chr1 64223994 64224006 GATA6_MA1104.1 7.354127803355763 + +chr1 64987850 64987862 GATA6_MA1104.1 8.196821072873984 + +chr1 65215853 65215865 GATA6_MA1104.1 8.946396431011031 - +chr1 65687999 65688011 GATA6_MA1104.1 8.532605138812265 - +chr1 66365215 66365227 GATA6_MA1104.1 9.283803188379252 - +chr1 66648919 66648931 GATA6_MA1104.1 8.419076543276496 + +chr1 66758402 66758414 GATA6_MA1104.1 8.274560997468061 - +chr1 67214459 67214471 GATA6_MA1104.1 9.024428093664753 + +chr1 70504751 70504763 GATA6_MA1104.1 8.770227696369689 + +chr1 71081540 71081552 GATA6_MA1104.1 8.442082833978004 + +chr1 71081656 71081668 GATA6_MA1104.1 7.736487898264644 + +chr1 72432872 72432884 GATA6_MA1104.1 7.278623319275917 + +chr1 72433389 72433401 GATA6_MA1104.1 7.316206735271503 - +chr1 74714208 74714220 GATA6_MA1104.1 9.160666223500344 - +chr1 74824713 74824725 GATA6_MA1104.1 7.618905186961974 - +chr1 74824871 74824883 GATA6_MA1104.1 7.231447035355144 + +chr1 75784565 75784577 GATA6_MA1104.1 8.738173324240263 + +chr1 75785476 75785488 GATA6_MA1104.1 7.472488706838082 + +chr1 75796593 75796605 GATA6_MA1104.1 9.168010509124439 + +chr1 75937660 75937672 GATA6_MA1104.1 8.457090958581674 - +chr1 75981314 75981326 GATA6_MA1104.1 8.695327392184327 - +chr1 77413592 77413604 GATA6_MA1104.1 9.037585941927885 - +chr1 77926944 77926956 GATA6_MA1104.1 9.175298519076907 + +chr1 78004572 78004584 GATA6_MA1104.1 7.575207483486907 - +chr1 78145307 78145319 GATA6_MA1104.1 8.947598013564647 - +chr1 78333702 78333714 GATA6_MA1104.1 8.478725616609919 + +chr1 79053177 79053189 GATA6_MA1104.1 11.388599522609880 - +chr1 79260373 79260385 GATA6_MA1104.1 9.915242285639275 - +chr1 79519462 79519474 GATA6_MA1104.1 8.953748339970430 - +chr1 79668122 79668134 GATA6_MA1104.1 8.372403089007655 + +chr1 79694695 79694707 GATA6_MA1104.1 10.823588852584393 + +chr1 79694700 79694712 GATA6_MA1104.1 9.146501127433766 + 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GATA6_MA1104.1 7.248588472810623 - +chr1 99784907 99784919 GATA6_MA1104.1 7.384775481120629 - diff --git a/demo/known_tfbs_chr1_hg38/GBX1_MA0889.1.bed b/demo/known_tfbs_chr1_hg38/GBX1_MA0889.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/GBX2_MA0890.1.bed b/demo/known_tfbs_chr1_hg38/GBX2_MA0890.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/GCM1_MA0646.1.bed b/demo/known_tfbs_chr1_hg38/GCM1_MA0646.1.bed new file mode 100644 index 0000000..3b7ac03 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/GCM1_MA0646.1.bed @@ -0,0 +1,120 @@ +chr1 1033125 1033135 GCM1_MA0646.1 7.926315724640042 - +chr1 1324803 1324813 GCM1_MA0646.1 7.263823616746026 - +chr1 1324867 1324877 GCM1_MA0646.1 7.333609668308331 - +chr1 1375447 1375457 GCM1_MA0646.1 8.208276738890346 - +chr1 1574533 1574543 GCM1_MA0646.1 7.407790165292552 - +chr1 1615608 1615618 GCM1_MA0646.1 7.412158573292078 + +chr1 1615637 1615647 GCM1_MA0646.1 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15835176 GCM1_MA0646.1 7.777615219281024 + +chr1 15975430 15975440 GCM1_MA0646.1 8.421652416784934 - +chr1 16206719 16206729 GCM1_MA0646.1 9.192010981898894 - +chr1 16237104 16237114 GCM1_MA0646.1 7.487884845058666 - +chr1 16367694 16367704 GCM1_MA0646.1 7.192911247412038 + +chr1 16421030 16421040 GCM1_MA0646.1 7.684695358305539 + +chr1 18955876 18955886 GCM1_MA0646.1 8.429300583692076 + +chr1 18956510 18956520 GCM1_MA0646.1 9.443162835184458 + +chr1 19800072 19800082 GCM1_MA0646.1 7.419806740199220 + +chr1 20633377 20633387 GCM1_MA0646.1 10.174320177473438 - +chr1 21783130 21783140 GCM1_MA0646.1 7.699620855631911 - +chr1 23344495 23344505 GCM1_MA0646.1 7.122441896919121 + +chr1 23868277 23868287 GCM1_MA0646.1 8.067657804368022 - +chr1 26036019 26036029 GCM1_MA0646.1 7.380382643379847 + +chr1 26036160 26036170 GCM1_MA0646.1 8.573840719992118 - +chr1 26542342 26542352 GCM1_MA0646.1 7.418596908775518 - +chr1 26826819 26826829 GCM1_MA0646.1 7.703150268695648 - +chr1 27659516 27659526 GCM1_MA0646.1 7.497753807389127 - +chr1 27773236 27773246 GCM1_MA0646.1 7.926315724640040 + +chr1 28199761 28199771 GCM1_MA0646.1 7.707912681370742 - +chr1 28642710 28642720 GCM1_MA0646.1 7.499901419965333 + +chr1 28737157 28737167 GCM1_MA0646.1 7.918667557732898 - +chr1 31605920 31605930 GCM1_MA0646.1 7.684695358305539 + +chr1 31644943 31644953 GCM1_MA0646.1 8.433668991691603 - +chr1 31789255 31789265 GCM1_MA0646.1 9.878960074070344 - +chr1 33037067 33037077 GCM1_MA0646.1 7.213815650438080 - +chr1 33256658 33256668 GCM1_MA0646.1 7.263823616746025 + +chr1 34866617 34866627 GCM1_MA0646.1 7.122441896919121 + +chr1 35079229 35079239 GCM1_MA0646.1 7.422965316775043 + +chr1 36464355 36464365 GCM1_MA0646.1 7.213815650438079 + +chr1 37289038 37289048 GCM1_MA0646.1 7.192911247412038 + +chr1 38859988 38859998 GCM1_MA0646.1 7.422965316775043 - +chr1 38873253 38873263 GCM1_MA0646.1 8.928161401225754 - +chr1 39901792 39901802 GCM1_MA0646.1 7.407790165292552 - +chr1 39955342 39955352 GCM1_MA0646.1 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7.772438204978796 + +chr1 101444552 101444562 GCM1_MA0646.1 8.446575337532973 - +chr1 101444980 101444990 GCM1_MA0646.1 9.142003015590950 - +chr1 103526232 103526242 GCM1_MA0646.1 8.225429033073578 + +chr1 108200508 108200518 GCM1_MA0646.1 10.397485633417832 + +chr1 108551408 108551418 GCM1_MA0646.1 7.486888836569011 + +chr1 108661141 108661151 GCM1_MA0646.1 7.766808475798061 - +chr1 110210772 110210782 GCM1_MA0646.1 7.478501910847487 + +chr1 111346437 111346447 GCM1_MA0646.1 8.397195432507502 - +chr1 111346489 111346499 GCM1_MA0646.1 7.848611102267033 + +chr1 111756073 111756083 GCM1_MA0646.1 8.721131274031436 - diff --git a/demo/known_tfbs_chr1_hg38/GCM2_MA0767.1.bed b/demo/known_tfbs_chr1_hg38/GCM2_MA0767.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/GLI2_MA0734.1.bed b/demo/known_tfbs_chr1_hg38/GLI2_MA0734.1.bed new file mode 100644 index 0000000..733daa3 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/GLI2_MA0734.1.bed @@ -0,0 +1,237 @@ 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6.905217898311010 + +chr1 5992119 5992130 GLI2_MA0734.1 7.946306753208041 + +chr1 6393173 6393184 GLI2_MA0734.1 7.536037714309603 + +chr1 6702006 6702017 GLI2_MA0734.1 7.692396774858809 + +chr1 6861885 6861896 GLI2_MA0734.1 6.905375677842685 + +chr1 7961982 7961993 GLI2_MA0734.1 7.445128541102632 - +chr1 8026356 8026367 GLI2_MA0734.1 7.048376514635045 - +chr1 8427809 8427820 GLI2_MA0734.1 7.638088938592236 + +chr1 8764507 8764518 GLI2_MA0734.1 8.119258933508812 - +chr1 9182113 9182124 GLI2_MA0734.1 8.832040371190784 - +chr1 10032753 10032764 GLI2_MA0734.1 6.988990385404148 - +chr1 10033184 10033195 GLI2_MA0734.1 8.577484493704549 - +chr1 10965205 10965216 GLI2_MA0734.1 10.051362617516601 + +chr1 10985894 10985905 GLI2_MA0734.1 9.018274414498775 + +chr1 11479289 11479300 GLI2_MA0734.1 7.445128541102632 - +chr1 11681332 11681343 GLI2_MA0734.1 8.242387079570952 - +chr1 11805932 11805943 GLI2_MA0734.1 6.918846598949574 - +chr1 11926339 11926350 GLI2_MA0734.1 8.167475872031908 + +chr1 12229780 12229791 GLI2_MA0734.1 7.028010359408251 - +chr1 12230226 12230237 GLI2_MA0734.1 8.161593650424313 + +chr1 15584912 15584923 GLI2_MA0734.1 7.662919889420591 + +chr1 15835423 15835434 GLI2_MA0734.1 8.552721002533541 + +chr1 15975635 15975646 GLI2_MA0734.1 7.387456092328081 + +chr1 16206632 16206643 GLI2_MA0734.1 7.253354735209667 + +chr1 16544702 16544713 GLI2_MA0734.1 9.858773231335604 + +chr1 16728576 16728587 GLI2_MA0734.1 9.858773231335604 - +chr1 17438198 17438209 GLI2_MA0734.1 7.234613258014228 + +chr1 17438645 17438656 GLI2_MA0734.1 8.621541543633471 - +chr1 18956417 18956428 GLI2_MA0734.1 10.676918553631310 - +chr1 19251575 19251586 GLI2_MA0734.1 7.536037714309603 + +chr1 20081197 20081208 GLI2_MA0734.1 8.633252265653772 - +chr1 20507960 20507971 GLI2_MA0734.1 7.198165967606816 + +chr1 21334457 21334468 GLI2_MA0734.1 7.134610650670712 - +chr1 21866147 21866158 GLI2_MA0734.1 7.158399111563034 + +chr1 22025394 22025405 GLI2_MA0734.1 6.834104578578841 + +chr1 22025699 22025710 GLI2_MA0734.1 6.918846598949574 + +chr1 23019876 23019887 GLI2_MA0734.1 7.208303467608807 + +chr1 23720697 23720708 GLI2_MA0734.1 9.708161979364913 + +chr1 23867884 23867895 GLI2_MA0734.1 9.174126792640704 + +chr1 23868342 23868353 GLI2_MA0734.1 7.359299939817055 + +chr1 24929679 24929690 GLI2_MA0734.1 7.114535107895731 - +chr1 25905798 25905809 GLI2_MA0734.1 8.534824504172912 - +chr1 25998258 25998269 GLI2_MA0734.1 9.127483072905763 - +chr1 26542027 26542038 GLI2_MA0734.1 8.008771120287102 + +chr1 27235134 27235145 GLI2_MA0734.1 7.118766152547345 - +chr1 27357676 27357687 GLI2_MA0734.1 9.528145851146954 + +chr1 27725841 27725852 GLI2_MA0734.1 7.457570148533001 - +chr1 28582108 28582119 GLI2_MA0734.1 6.895121001956281 + +chr1 31296971 31296982 GLI2_MA0734.1 6.960575156143795 + +chr1 31549035 31549046 GLI2_MA0734.1 8.856172482091424 + +chr1 31938635 31938646 GLI2_MA0734.1 8.215255769738103 + +chr1 32351399 32351410 GLI2_MA0734.1 6.905234268215490 + +chr1 32650632 32650643 GLI2_MA0734.1 7.756016440777877 + +chr1 32981196 32981207 GLI2_MA0734.1 8.652230145380480 - +chr1 33472575 33472586 GLI2_MA0734.1 8.082480698589494 - +chr1 35031635 35031646 GLI2_MA0734.1 8.793219462732981 - +chr1 35079309 35079320 GLI2_MA0734.1 10.436384766361602 + +chr1 35192429 35192440 GLI2_MA0734.1 8.534824504172912 + +chr1 35268966 35268977 GLI2_MA0734.1 9.230635679352975 - +chr1 35641368 35641379 GLI2_MA0734.1 7.155716722956168 + +chr1 36089006 36089017 GLI2_MA0734.1 6.994871388126017 - +chr1 37692599 37692610 GLI2_MA0734.1 8.001853292301242 - +chr1 38873213 38873224 GLI2_MA0734.1 7.468049050120863 + +chr1 38991105 38991116 GLI2_MA0734.1 7.722604927607097 + +chr1 39491411 39491422 GLI2_MA0734.1 7.538580027049660 + +chr1 39576413 39576424 GLI2_MA0734.1 9.002092467261145 - +chr1 39789072 39789083 GLI2_MA0734.1 8.175846685184672 - +chr1 40039834 40039845 GLI2_MA0734.1 7.499427370737334 + +chr1 40450238 40450249 GLI2_MA0734.1 9.057276985144858 + +chr1 40531566 40531577 GLI2_MA0734.1 7.252474429304587 - +chr1 42766936 42766947 GLI2_MA0734.1 8.652230145380480 - +chr1 42846796 42846807 GLI2_MA0734.1 7.621915083659463 - +chr1 42924613 42924624 GLI2_MA0734.1 7.974721982468393 + +chr1 43368410 43368421 GLI2_MA0734.1 11.145229288250842 + +chr1 44213613 44213624 GLI2_MA0734.1 6.938532931651316 + +chr1 44721678 44721689 GLI2_MA0734.1 10.518389911817028 + +chr1 45011028 45011039 GLI2_MA0734.1 7.513100317721725 + +chr1 45394432 45394443 GLI2_MA0734.1 8.025807447561784 + +chr1 45803793 45803804 GLI2_MA0734.1 7.535273428911903 - +chr1 46303629 46303640 GLI2_MA0734.1 10.925150130724328 + +chr1 47334520 47334531 GLI2_MA0734.1 6.997743134007632 + +chr1 47437377 47437388 GLI2_MA0734.1 8.242387079570952 - +chr1 50333116 50333127 GLI2_MA0734.1 8.998542357262490 + +chr1 50960337 50960348 GLI2_MA0734.1 8.227160910218414 + +chr1 52056056 52056067 GLI2_MA0734.1 9.355587626142364 + +chr1 52637028 52637039 GLI2_MA0734.1 7.088943871787794 - +chr1 53738883 53738894 GLI2_MA0734.1 6.875187829271041 + +chr1 54199964 54199975 GLI2_MA0734.1 7.638088938592236 + +chr1 55215078 55215089 GLI2_MA0734.1 8.175846685184672 - +chr1 55277426 55277437 GLI2_MA0734.1 7.399676984567598 - +chr1 56525926 56525937 GLI2_MA0734.1 7.915116843719879 + +chr1 59013644 59013655 GLI2_MA0734.1 7.056099126187741 + +chr1 59020443 59020454 GLI2_MA0734.1 7.223061598810687 + +chr1 61742838 61742849 GLI2_MA0734.1 7.688860244446814 - +chr1 62436187 62436198 GLI2_MA0734.1 9.133399908992692 - +chr1 63125107 63125118 GLI2_MA0734.1 7.960082633463531 - +chr1 63317423 63317434 GLI2_MA0734.1 7.957895086492702 - +chr1 64470156 64470167 GLI2_MA0734.1 7.445128541102632 - +chr1 64470479 64470490 GLI2_MA0734.1 9.384452427162124 - +chr1 64745059 64745070 GLI2_MA0734.1 6.899352046607896 + +chr1 64987716 64987727 GLI2_MA0734.1 7.111485111952087 - +chr1 65148655 65148666 GLI2_MA0734.1 8.369781081796182 - +chr1 65254356 65254367 GLI2_MA0734.1 7.329075417164285 - +chr1 65254652 65254663 GLI2_MA0734.1 9.414660579910413 - +chr1 66276321 66276332 GLI2_MA0734.1 7.443198714298345 + +chr1 66365177 66365188 GLI2_MA0734.1 7.665193261907245 + +chr1 66649463 66649474 GLI2_MA0734.1 7.028010359408251 - +chr1 66925440 66925451 GLI2_MA0734.1 8.043136009660977 + +chr1 67054301 67054312 GLI2_MA0734.1 8.730307023841760 + +chr1 67112650 67112661 GLI2_MA0734.1 10.707607155378319 + +chr1 67194561 67194572 GLI2_MA0734.1 6.904202264879280 - +chr1 67430260 67430271 GLI2_MA0734.1 8.832040371190784 + +chr1 71053831 71053842 GLI2_MA0734.1 6.813580984861925 + +chr1 74732689 74732700 GLI2_MA0734.1 6.828549849984972 - +chr1 75786157 75786168 GLI2_MA0734.1 7.111485111952087 - +chr1 76190926 76190937 GLI2_MA0734.1 7.549107244824609 - +chr1 77219323 77219334 GLI2_MA0734.1 8.552721002533541 + +chr1 77219861 77219872 GLI2_MA0734.1 8.043649778334194 - +chr1 77672543 77672554 GLI2_MA0734.1 9.604484254822447 - +chr1 77759435 77759446 GLI2_MA0734.1 7.732933035458866 + +chr1 77779795 77779806 GLI2_MA0734.1 7.790804336676826 + +chr1 83488254 83488265 GLI2_MA0734.1 7.151940276317439 + +chr1 83761270 83761281 GLI2_MA0734.1 7.151046217657364 + +chr1 84152771 84152782 GLI2_MA0734.1 7.794964400524618 + +chr1 84479560 84479571 GLI2_MA0734.1 6.960575156143795 - +chr1 84574454 84574465 GLI2_MA0734.1 7.859624877776755 - +chr1 84689885 84689896 GLI2_MA0734.1 7.762389107416473 + +chr1 85465250 85465261 GLI2_MA0734.1 6.905234268215490 + +chr1 86395895 86395906 GLI2_MA0734.1 9.915001887774595 - +chr1 86705061 86705072 GLI2_MA0734.1 10.134415993714045 + +chr1 86914891 86914902 GLI2_MA0734.1 7.189561990413366 - +chr1 89524076 89524087 GLI2_MA0734.1 6.791908814374557 - +chr1 89843762 89843773 GLI2_MA0734.1 9.057276985144858 - +chr1 93079006 93079017 GLI2_MA0734.1 8.395774559797337 + +chr1 93180619 93180630 GLI2_MA0734.1 6.998421011286087 + +chr1 93608486 93608497 GLI2_MA0734.1 9.221506573200594 - +chr1 93615440 93615451 GLI2_MA0734.1 7.457553778628521 - +chr1 93846722 93846733 GLI2_MA0734.1 7.355068895165441 + +chr1 93879164 93879175 GLI2_MA0734.1 8.920263431736240 + +chr1 93909787 93909798 GLI2_MA0734.1 6.843233684731221 - +chr1 95117770 95117781 GLI2_MA0734.1 8.496891535911766 - +chr1 95234139 95234150 GLI2_MA0734.1 7.155716722956168 - +chr1 96722375 96722386 GLI2_MA0734.1 6.882335489187940 - +chr1 100895822 100895833 GLI2_MA0734.1 6.824276727708122 - +chr1 101309917 101309928 GLI2_MA0734.1 9.058954810622343 + +chr1 101520931 101520942 GLI2_MA0734.1 7.536037714309603 - +chr1 104932561 104932572 GLI2_MA0734.1 7.684204045414364 + +chr1 104932857 104932868 GLI2_MA0734.1 7.352577434280989 - +chr1 104933103 104933114 GLI2_MA0734.1 8.256357748642060 + +chr1 104987449 104987460 GLI2_MA0734.1 7.005576581425822 + +chr1 105028227 105028238 GLI2_MA0734.1 6.834104578578841 + +chr1 107056599 107056610 GLI2_MA0734.1 7.463834375373728 + +chr1 107140985 107140996 GLI2_MA0734.1 7.080796510205078 + +chr1 107141589 107141600 GLI2_MA0734.1 6.818251490160728 - +chr1 108559968 108559979 GLI2_MA0734.1 6.946715457263307 + +chr1 109100481 109100492 GLI2_MA0734.1 8.552721002533541 + +chr1 109214282 109214293 GLI2_MA0734.1 7.341676433642752 - +chr1 109620024 109620035 GLI2_MA0734.1 11.656821791840214 - +chr1 109984944 109984955 GLI2_MA0734.1 6.848459642909017 - +chr1 110407629 110407640 GLI2_MA0734.1 7.124648374154938 + +chr1 110619597 110619608 GLI2_MA0734.1 7.992335553300451 + +chr1 110674743 110674754 GLI2_MA0734.1 8.805566444190909 - +chr1 110787337 110787348 GLI2_MA0734.1 7.988583688239712 + +chr1 111448764 111448775 GLI2_MA0734.1 8.652760283958179 + +chr1 111739004 111739015 GLI2_MA0734.1 7.647908561660618 - +chr1 111739666 111739677 GLI2_MA0734.1 6.854965329455132 - +chr1 112715854 112715865 GLI2_MA0734.1 8.386889977971355 + +chr1 112955893 112955904 GLI2_MA0734.1 8.071953480814546 + +chr1 113871914 113871925 GLI2_MA0734.1 7.549107244824609 - +chr1 114511486 114511497 GLI2_MA0734.1 7.721124574308148 - +chr1 116152306 116152317 GLI2_MA0734.1 8.116985561022156 + +chr1 116570831 116570842 GLI2_MA0734.1 7.627531555686271 + +chr1 116570920 116570931 GLI2_MA0734.1 7.976202159922183 + +chr1 116738202 116738213 GLI2_MA0734.1 7.535273428911903 - +chr1 117366999 117367010 GLI2_MA0734.1 7.662919889420589 - +chr1 117606162 117606173 GLI2_MA0734.1 6.858954914401359 + +chr1 119141166 119141177 GLI2_MA0734.1 7.621915083659463 + +chr1 119647753 119647764 GLI2_MA0734.1 6.853920259927587 - +chr1 119675511 119675522 GLI2_MA0734.1 7.552297572669622 - +chr1 120844267 120844278 GLI2_MA0734.1 7.499427370737334 - +chr1 120914013 120914024 GLI2_MA0734.1 7.968390357985045 - +chr1 121097250 121097261 GLI2_MA0734.1 6.918846598949574 - +chr1 144551907 144551918 GLI2_MA0734.1 7.310036814957830 - +chr1 145215065 145215076 GLI2_MA0734.1 7.968390357985045 + +chr1 145845956 145845967 GLI2_MA0734.1 8.496891535911768 + +chr1 145858869 145858880 GLI2_MA0734.1 8.242387079570953 + +chr1 146037766 146037777 GLI2_MA0734.1 7.422386102150880 - +chr1 148459028 148459039 GLI2_MA0734.1 7.968390357985045 + +chr1 149608117 149608128 GLI2_MA0734.1 7.968390357985045 - +chr1 149792615 149792626 GLI2_MA0734.1 6.918846598949574 - +chr1 149997776 149997787 GLI2_MA0734.1 6.842137898998484 - +chr1 150149991 150150002 GLI2_MA0734.1 8.270802308831303 - +chr1 150234997 150235008 GLI2_MA0734.1 7.231839646804002 + +chr1 150268902 150268913 GLI2_MA0734.1 6.904869685500905 + +chr1 150579222 150579233 GLI2_MA0734.1 6.904006182002219 - +chr1 151059548 151059559 GLI2_MA0734.1 7.452327820450725 - +chr1 152460449 152460460 GLI2_MA0734.1 9.136173520202915 - +chr1 153842385 153842396 GLI2_MA0734.1 8.031302796876266 - +chr1 153977721 153977732 GLI2_MA0734.1 8.205115380155060 - +chr1 154183121 154183132 GLI2_MA0734.1 7.061805237864811 + +chr1 154558908 154558919 GLI2_MA0734.1 7.776571501579311 - +chr1 154559228 154559239 GLI2_MA0734.1 8.263063884273643 - +chr1 154559581 154559592 GLI2_MA0734.1 8.001853292301242 - +chr1 154608550 154608561 GLI2_MA0734.1 10.536135152531338 - +chr1 155050843 155050854 GLI2_MA0734.1 6.952520317221791 + +chr1 155244633 155244644 GLI2_MA0734.1 7.123420287941668 + +chr1 155609982 155609993 GLI2_MA0734.1 8.167475872031908 + +chr1 155688340 155688351 GLI2_MA0734.1 7.795035381328440 - +chr1 155688897 155688908 GLI2_MA0734.1 7.001899975147018 - +chr1 155745564 155745575 GLI2_MA0734.1 8.167475872031908 + +chr1 156054640 156054651 GLI2_MA0734.1 8.490216414770753 - +chr1 156338465 156338476 GLI2_MA0734.1 8.524305773273188 - +chr1 156740829 156740840 GLI2_MA0734.1 6.849323146407702 - +chr1 158149941 158149952 GLI2_MA0734.1 9.261869607736543 - +chr1 158286053 158286064 GLI2_MA0734.1 7.322811984980421 - +chr1 158952057 158952068 GLI2_MA0734.1 7.949684523713949 - +chr1 160262555 160262566 GLI2_MA0734.1 10.148723032323785 - +chr1 160454345 160454356 GLI2_MA0734.1 8.227160910218414 + +chr1 161098375 161098386 GLI2_MA0734.1 8.937712499185780 + +chr1 162069952 162069963 GLI2_MA0734.1 8.303836601773911 + diff --git a/demo/known_tfbs_chr1_hg38/GLIS1_MA0735.1.bed b/demo/known_tfbs_chr1_hg38/GLIS1_MA0735.1.bed new file mode 100644 index 0000000..3257a1c --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/GLIS1_MA0735.1.bed @@ -0,0 +1,231 @@ +chr1 1157893 1157908 GLIS1_MA0735.1 -1.608140433396193 - +chr1 1399346 1399361 GLIS1_MA0735.1 -5.595902092646669 + +chr1 1505541 1505556 GLIS1_MA0735.1 -6.641607033333337 - +chr1 1693170 1693185 GLIS1_MA0735.1 -4.187861081255955 + +chr1 1746450 1746465 GLIS1_MA0735.1 -4.187861081255955 + +chr1 1890464 1890479 GLIS1_MA0735.1 -3.466549941512456 + +chr1 1890952 1890967 GLIS1_MA0735.1 -4.587420517856107 + +chr1 1908926 1908941 GLIS1_MA0735.1 -7.350926477448563 - +chr1 1919432 1919447 GLIS1_MA0735.1 0.249374438313889 + +chr1 1919510 1919525 GLIS1_MA0735.1 -5.441882748480738 + +chr1 2133459 2133474 GLIS1_MA0735.1 -4.089089079771576 + +chr1 2227943 2227958 GLIS1_MA0735.1 -5.438897138529665 - +chr1 2300857 2300872 GLIS1_MA0735.1 3.180880702280572 + +chr1 2548369 2548384 GLIS1_MA0735.1 1.488288181847915 + +chr1 2556431 2556446 GLIS1_MA0735.1 -6.888103258852658 + +chr1 2578263 2578278 GLIS1_MA0735.1 -3.981839904079226 - +chr1 2585691 2585706 GLIS1_MA0735.1 -7.358869381722155 - +chr1 3747496 3747511 GLIS1_MA0735.1 -2.719746746512529 - +chr1 3910805 3910820 GLIS1_MA0735.1 -6.552590868630841 + +chr1 5992024 5992039 GLIS1_MA0735.1 2.574525730528996 - +chr1 5992096 5992111 GLIS1_MA0735.1 -3.755549627301996 + +chr1 5992253 5992268 GLIS1_MA0735.1 -6.130077998309799 + +chr1 6393571 6393586 GLIS1_MA0735.1 -4.414300912107229 - +chr1 6393780 6393795 GLIS1_MA0735.1 -5.890402647207186 + +chr1 6580070 6580085 GLIS1_MA0735.1 -7.139479202048979 - +chr1 6625187 6625202 GLIS1_MA0735.1 -5.372263386389551 - +chr1 6784832 6784847 GLIS1_MA0735.1 -1.426001113491935 + +chr1 7771400 7771415 GLIS1_MA0735.1 -6.967619517477646 - +chr1 7961520 7961535 GLIS1_MA0735.1 7.029371627935486 - +chr1 8526016 8526031 GLIS1_MA0735.1 -4.141281301573743 + +chr1 8703430 8703445 GLIS1_MA0735.1 6.822413261792901 + +chr1 8879011 8879026 GLIS1_MA0735.1 -4.567699118341168 - +chr1 9129406 9129421 GLIS1_MA0735.1 -2.148685732589651 + +chr1 9234878 9234893 GLIS1_MA0735.1 2.325909882148145 - +chr1 10430433 10430448 GLIS1_MA0735.1 -7.194128750599394 - +chr1 10494874 10494889 GLIS1_MA0735.1 -2.327386150932694 + +chr1 11012414 11012429 GLIS1_MA0735.1 -1.357562756436795 - +chr1 11681079 11681094 GLIS1_MA0735.1 -6.570643600274034 - +chr1 11681304 11681319 GLIS1_MA0735.1 -6.578187615276622 + +chr1 11806407 11806422 GLIS1_MA0735.1 -4.940857274588628 - +chr1 11926423 11926438 GLIS1_MA0735.1 -1.288830811066327 - +chr1 12079326 12079341 GLIS1_MA0735.1 -3.962607464650641 + +chr1 13700119 13700134 GLIS1_MA0735.1 -5.594550276014199 - +chr1 15409770 15409785 GLIS1_MA0735.1 -5.975267193512023 + +chr1 15409862 15409877 GLIS1_MA0735.1 -3.753312911719693 - +chr1 15835065 15835080 GLIS1_MA0735.1 -6.434193068492910 + +chr1 16367583 16367598 GLIS1_MA0735.1 -2.509122544655623 + +chr1 16440525 16440540 GLIS1_MA0735.1 -3.586009331888241 - +chr1 17438568 17438583 GLIS1_MA0735.1 -5.129999481839400 - +chr1 19210176 19210191 GLIS1_MA0735.1 -3.178906912958624 + +chr1 19485555 19485570 GLIS1_MA0735.1 -5.616625848353396 + +chr1 19485612 19485627 GLIS1_MA0735.1 -1.338708302284982 + +chr1 20508148 20508163 GLIS1_MA0735.1 -6.440640578891704 + +chr1 21783139 21783154 GLIS1_MA0735.1 -5.149275337504332 + +chr1 22026082 22026097 GLIS1_MA0735.1 -2.281981318694502 - +chr1 22052843 22052858 GLIS1_MA0735.1 1.440603077810486 - +chr1 22053225 22053240 GLIS1_MA0735.1 -6.133574712263280 - +chr1 23743964 23743979 GLIS1_MA0735.1 -4.269931232900789 + +chr1 25820532 25820547 GLIS1_MA0735.1 -4.548730218800412 - +chr1 25859453 25859468 GLIS1_MA0735.1 -5.539906833974534 - +chr1 25905876 25905891 GLIS1_MA0735.1 -5.730317930542914 + +chr1 26111044 26111059 GLIS1_MA0735.1 -3.741311571627429 + +chr1 26112244 26112259 GLIS1_MA0735.1 -2.719052456762224 + +chr1 26234403 26234418 GLIS1_MA0735.1 -0.556913707977864 - +chr1 26473032 26473047 GLIS1_MA0735.1 -6.551670368746642 - +chr1 27235175 27235190 GLIS1_MA0735.1 -6.143329832374707 - +chr1 28669102 28669117 GLIS1_MA0735.1 -5.157589165123507 - +chr1 31296622 31296637 GLIS1_MA0735.1 -7.081553757875481 + +chr1 31789316 31789331 GLIS1_MA0735.1 2.285089596877304 + +chr1 31937940 31937955 GLIS1_MA0735.1 -6.840546946748223 + +chr1 32013769 32013784 GLIS1_MA0735.1 -6.091402485786843 - +chr1 32179998 32180013 GLIS1_MA0735.1 -4.023063221355446 + +chr1 32651038 32651053 GLIS1_MA0735.1 -7.050127583202950 - +chr1 33350358 33350373 GLIS1_MA0735.1 -6.041791571348061 - +chr1 35883361 35883376 GLIS1_MA0735.1 -2.113683855362331 + +chr1 36306701 36306716 GLIS1_MA0735.1 -7.114871280960147 - +chr1 37514540 37514555 GLIS1_MA0735.1 -6.737863265778507 + +chr1 37692063 37692078 GLIS1_MA0735.1 -6.322909129489348 + +chr1 37692350 37692365 GLIS1_MA0735.1 -6.590535501842329 + +chr1 37990038 37990053 GLIS1_MA0735.1 2.173005324170487 + +chr1 38859606 38859621 GLIS1_MA0735.1 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45206465 GLIS1_MA0735.1 -6.295269823716438 - +chr1 45206537 45206552 GLIS1_MA0735.1 -5.886150412479229 - +chr1 45521634 45521649 GLIS1_MA0735.1 7.203694680904078 - +chr1 45544074 45544089 GLIS1_MA0735.1 -7.070507010388684 + +chr1 46132766 46132781 GLIS1_MA0735.1 -2.831429653186338 + +chr1 51236351 51236366 GLIS1_MA0735.1 -5.257491312613484 - +chr1 51729552 51729567 GLIS1_MA0735.1 0.714036410562947 + +chr1 51729722 51729737 GLIS1_MA0735.1 -4.396068326611021 - +chr1 52033538 52033553 GLIS1_MA0735.1 -5.518435451488054 - +chr1 52056383 52056398 GLIS1_MA0735.1 -3.858548171381903 + +chr1 52056543 52056558 GLIS1_MA0735.1 -2.683401561448686 - +chr1 52404577 52404592 GLIS1_MA0735.1 -6.145313690269568 - +chr1 52698177 52698192 GLIS1_MA0735.1 -3.679824156889176 + +chr1 52843173 52843188 GLIS1_MA0735.1 -6.350899381824078 - +chr1 52843346 52843361 GLIS1_MA0735.1 -6.323580688451882 - +chr1 54199955 54199970 GLIS1_MA0735.1 -3.316727086574521 + +chr1 54200321 54200336 GLIS1_MA0735.1 -1.827002480447512 - +chr1 55214401 55214416 GLIS1_MA0735.1 -7.240459138957605 + +chr1 56579116 56579131 GLIS1_MA0735.1 -0.917137540715879 - +chr1 56579362 56579377 GLIS1_MA0735.1 -5.852943128921342 - +chr1 56579597 56579612 GLIS1_MA0735.1 -2.603366551859868 - +chr1 58784746 58784761 GLIS1_MA0735.1 9.646348117456183 + +chr1 59008113 59008128 GLIS1_MA0735.1 -4.627769846348107 - +chr1 64470523 64470538 GLIS1_MA0735.1 -5.513442274290393 + +chr1 64744727 64744742 GLIS1_MA0735.1 -4.994727636824213 + +chr1 64966805 64966820 GLIS1_MA0735.1 -3.193874655278801 - +chr1 65067262 65067277 GLIS1_MA0735.1 -6.583052460980730 + +chr1 65067518 65067533 GLIS1_MA0735.1 -4.192149255841281 + +chr1 66930214 66930229 GLIS1_MA0735.1 -6.792536635143718 - +chr1 67054451 67054466 GLIS1_MA0735.1 -3.527042790091156 - +chr1 67430155 67430170 GLIS1_MA0735.1 -5.618340273609361 + +chr1 67430501 67430516 GLIS1_MA0735.1 -2.396933010033719 + +chr1 67833273 67833288 GLIS1_MA0735.1 -0.514295312806980 + +chr1 70221095 70221110 GLIS1_MA0735.1 -3.687317178540325 - +chr1 70354914 70354929 GLIS1_MA0735.1 -3.079014980175589 - +chr1 70410799 70410814 GLIS1_MA0735.1 3.873424915326666 + +chr1 75797037 75797052 GLIS1_MA0735.1 -6.252247967793148 - +chr1 77682393 77682408 GLIS1_MA0735.1 -5.583651539092996 - +chr1 77759324 77759339 GLIS1_MA0735.1 -4.961559646376679 + +chr1 83860665 83860680 GLIS1_MA0735.1 -5.141185565341245 + +chr1 84078713 84078728 GLIS1_MA0735.1 -7.000090752130054 + +chr1 84298434 84298449 GLIS1_MA0735.1 -4.632022304393264 + +chr1 84573634 84573649 GLIS1_MA0735.1 -3.558718261699745 - +chr1 84690028 84690043 GLIS1_MA0735.1 -3.238202989705059 + +chr1 84945168 84945183 GLIS1_MA0735.1 -2.645064488870076 + +chr1 85047930 85047945 GLIS1_MA0735.1 -5.386668960208872 + +chr1 86395990 86396005 GLIS1_MA0735.1 -3.182248312241000 + +chr1 87152069 87152084 GLIS1_MA0735.1 -5.835746596843261 - +chr1 88992658 88992673 GLIS1_MA0735.1 -7.251991404447624 - +chr1 89198955 89198970 GLIS1_MA0735.1 -4.730243162387437 - +chr1 89524466 89524481 GLIS1_MA0735.1 0.784976053188970 - +chr1 89995262 89995277 GLIS1_MA0735.1 -5.807779171932678 - +chr1 89995323 89995338 GLIS1_MA0735.1 6.243517201533655 - +chr1 90358645 90358660 GLIS1_MA0735.1 -0.811397196410176 - +chr1 91021419 91021434 GLIS1_MA0735.1 -4.927216129584811 - +chr1 91885626 91885641 GLIS1_MA0735.1 -3.595653702469285 - +chr1 92080428 92080443 GLIS1_MA0735.1 -5.645129013584691 - +chr1 92484731 92484746 GLIS1_MA0735.1 -4.994034946981760 - +chr1 92961879 92961894 GLIS1_MA0735.1 -6.411404061703121 + +chr1 93607843 93607858 GLIS1_MA0735.1 -3.916480811767208 + +chr1 93681681 93681696 GLIS1_MA0735.1 -7.149302513686378 + +chr1 93846719 93846734 GLIS1_MA0735.1 -4.330397699267460 + +chr1 94237332 94237347 GLIS1_MA0735.1 -5.612126969494099 - +chr1 94237407 94237422 GLIS1_MA0735.1 -6.383263453266768 + +chr1 94418258 94418273 GLIS1_MA0735.1 -4.856735606048919 + +chr1 94541881 94541896 GLIS1_MA0735.1 -5.920287996053634 - +chr1 94927418 94927433 GLIS1_MA0735.1 -4.685118552930579 - +chr1 96722013 96722028 GLIS1_MA0735.1 -6.236136781668867 + +chr1 99970047 99970062 GLIS1_MA0735.1 -7.175784289641571 - +chr1 100077788 100077803 GLIS1_MA0735.1 -3.161364130527614 + +chr1 100351905 100351920 GLIS1_MA0735.1 -3.300745969663194 - +chr1 101236825 101236840 GLIS1_MA0735.1 -6.483330419842623 - +chr1 104878670 104878685 GLIS1_MA0735.1 -4.043453953133877 + +chr1 107016097 107016112 GLIS1_MA0735.1 -6.615784013250450 - +chr1 107141554 107141569 GLIS1_MA0735.1 -4.654074298367358 + +chr1 107451518 107451533 GLIS1_MA0735.1 -3.710530354413393 - +chr1 107499784 107499799 GLIS1_MA0735.1 -7.114060111627295 - +chr1 107964751 107964766 GLIS1_MA0735.1 7.267315894457397 - +chr1 107965169 107965184 GLIS1_MA0735.1 -5.390697388999015 + +chr1 107965412 107965427 GLIS1_MA0735.1 -4.184506193893153 - +chr1 108692479 108692494 GLIS1_MA0735.1 -5.792827877651819 + +chr1 108876866 108876881 GLIS1_MA0735.1 -5.027554890412451 - +chr1 109041648 109041663 GLIS1_MA0735.1 -3.856561893798410 + +chr1 109041965 109041980 GLIS1_MA0735.1 -3.842103959905524 - +chr1 110034856 110034871 GLIS1_MA0735.1 -2.579448092020746 - +chr1 110339526 110339541 GLIS1_MA0735.1 -3.255540068638410 + +chr1 110964035 110964050 GLIS1_MA0735.1 -5.495506109919662 + +chr1 111222147 111222162 GLIS1_MA0735.1 -6.764548353551330 - +chr1 111448708 111448723 GLIS1_MA0735.1 -0.728396133468460 - +chr1 111620194 111620209 GLIS1_MA0735.1 -6.603976074161421 - +chr1 111739641 111739656 GLIS1_MA0735.1 5.355088643254724 + +chr1 112956685 112956700 GLIS1_MA0735.1 -7.275598020288799 - +chr1 113812125 113812140 GLIS1_MA0735.1 0.983754357068481 + +chr1 114511115 114511130 GLIS1_MA0735.1 -4.892059850444032 + +chr1 115976381 115976396 GLIS1_MA0735.1 -5.391843597383342 + +chr1 116152303 116152318 GLIS1_MA0735.1 -7.209335932238536 + +chr1 116152401 116152416 GLIS1_MA0735.1 -3.373056758659889 - +chr1 116418666 116418681 GLIS1_MA0735.1 5.325733225646165 - +chr1 116571112 116571127 GLIS1_MA0735.1 -3.656213148876643 + +chr1 116827250 116827265 GLIS1_MA0735.1 -7.058392896946676 + +chr1 117059675 117059690 GLIS1_MA0735.1 1.037787528843288 - +chr1 119140260 119140275 GLIS1_MA0735.1 -6.909575162129340 + +chr1 120724400 120724415 GLIS1_MA0735.1 -2.545536984817753 - +chr1 144461572 144461587 GLIS1_MA0735.1 -4.679056661815541 + +chr1 145216051 145216066 GLIS1_MA0735.1 5.223071594771168 - +chr1 145216152 145216167 GLIS1_MA0735.1 -5.858694166094390 + +chr1 146038263 146038278 GLIS1_MA0735.1 1.346365328883700 - +chr1 149793132 149793147 GLIS1_MA0735.1 -6.522621205839596 + +chr1 150010547 150010562 GLIS1_MA0735.1 -6.963548700386641 + +chr1 150067081 150067096 GLIS1_MA0735.1 -3.080252869780235 + +chr1 150163233 150163248 GLIS1_MA0735.1 5.480179254350006 + +chr1 150562570 150562585 GLIS1_MA0735.1 -4.482389839060984 - +chr1 151070961 151070976 GLIS1_MA0735.1 -3.297678038748292 - +chr1 151611995 151612010 GLIS1_MA0735.1 -4.442439513805613 + +chr1 153535969 153535984 GLIS1_MA0735.1 0.775247820275892 - +chr1 153634479 153634494 GLIS1_MA0735.1 -3.799563679753987 + +chr1 153923013 153923028 GLIS1_MA0735.1 -1.131877314343605 + +chr1 153958479 153958494 GLIS1_MA0735.1 -2.566354403502542 + +chr1 153977552 153977567 GLIS1_MA0735.1 -7.347469609615634 + +chr1 154445375 154445390 GLIS1_MA0735.1 -3.079520852239751 - +chr1 154870385 154870400 GLIS1_MA0735.1 -6.208855608470859 + +chr1 154936693 154936708 GLIS1_MA0735.1 -4.250261779761455 + +chr1 154936830 154936845 GLIS1_MA0735.1 -0.822613286264010 + +chr1 154937049 154937064 GLIS1_MA0735.1 -0.172002925268397 - +chr1 155050798 155050813 GLIS1_MA0735.1 -1.900791493410811 + +chr1 155050855 155050870 GLIS1_MA0735.1 -2.577437556425787 - +chr1 155051164 155051179 GLIS1_MA0735.1 2.107584030110824 - +chr1 155194408 155194423 GLIS1_MA0735.1 -1.737502388622895 - +chr1 156226093 156226108 GLIS1_MA0735.1 -6.434820710453029 + +chr1 156728792 156728807 GLIS1_MA0735.1 -4.891049497864937 + +chr1 157045657 157045672 GLIS1_MA0735.1 -6.263225136429641 - +chr1 157045738 157045753 GLIS1_MA0735.1 -6.797579194820677 + +chr1 157045934 157045949 GLIS1_MA0735.1 -5.164963482646307 + +chr1 157046057 157046072 GLIS1_MA0735.1 -5.835017309534048 + diff --git a/demo/known_tfbs_chr1_hg38/GLIS2_MA0736.1.bed b/demo/known_tfbs_chr1_hg38/GLIS2_MA0736.1.bed new file mode 100644 index 0000000..124694c --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/GLIS2_MA0736.1.bed @@ -0,0 +1,467 @@ +chr1 1019568 1019581 GLIS2_MA0736.1 8.921412580807953 - +chr1 1033404 1033417 GLIS2_MA0736.1 7.718751001201858 + +chr1 1157846 1157859 GLIS2_MA0736.1 7.613264858503108 - +chr1 1349413 1349426 GLIS2_MA0736.1 10.563782355858772 - +chr1 1399693 1399706 GLIS2_MA0736.1 5.952900226895312 - +chr1 1630218 1630231 GLIS2_MA0736.1 8.799175813191066 + +chr1 1630452 1630465 GLIS2_MA0736.1 5.792514669429162 + +chr1 1693171 1693184 GLIS2_MA0736.1 8.525692707096001 + +chr1 1746451 1746464 GLIS2_MA0736.1 8.525692707096001 + +chr1 1890575 1890588 GLIS2_MA0736.1 6.063043508388498 + +chr1 1909224 1909237 GLIS2_MA0736.1 8.119383814792259 - +chr1 1919435 1919448 GLIS2_MA0736.1 6.481735642405443 + +chr1 2133397 2133410 GLIS2_MA0736.1 7.144716799610994 + +chr1 2133460 2133473 GLIS2_MA0736.1 7.746508814727974 + +chr1 2205543 2205556 GLIS2_MA0736.1 6.647702275406654 - +chr1 2227944 2227957 GLIS2_MA0736.1 7.992184766587252 - +chr1 2290617 2290630 GLIS2_MA0736.1 5.881496632963048 - +chr1 2300858 2300871 GLIS2_MA0736.1 9.784369136242619 + +chr1 2526652 2526665 GLIS2_MA0736.1 6.468680341368885 + +chr1 2548370 2548383 GLIS2_MA0736.1 10.063171625301129 + +chr1 2556409 2556422 GLIS2_MA0736.1 5.993068019094128 + +chr1 2556484 2556497 GLIS2_MA0736.1 6.058383940790686 + +chr1 2578033 2578046 GLIS2_MA0736.1 6.418585261773794 + +chr1 2578056 2578069 GLIS2_MA0736.1 6.345849040212057 + +chr1 2586323 2586336 GLIS2_MA0736.1 8.031173246706258 + +chr1 2688206 2688219 GLIS2_MA0736.1 6.558400671994116 + +chr1 2688246 2688259 GLIS2_MA0736.1 6.558400671994116 + +chr1 2750281 2750294 GLIS2_MA0736.1 5.556056396214919 + +chr1 3625229 3625242 GLIS2_MA0736.1 8.826610658239538 + +chr1 3856803 3856816 GLIS2_MA0736.1 6.297390491638510 + +chr1 3900339 3900352 GLIS2_MA0736.1 7.575596961186292 + +chr1 3900514 3900527 GLIS2_MA0736.1 11.547752517868940 - +chr1 5992099 5992112 GLIS2_MA0736.1 7.805685117276649 + +chr1 6026251 6026264 GLIS2_MA0736.1 7.194682188143094 + +chr1 6026819 6026832 GLIS2_MA0736.1 9.245475167269221 - +chr1 6199538 6199551 GLIS2_MA0736.1 5.776118458715350 + +chr1 6235486 6235499 GLIS2_MA0736.1 5.881227661538538 + +chr1 6490173 6490186 GLIS2_MA0736.1 6.788654618533839 + +chr1 6602985 6602998 GLIS2_MA0736.1 9.106033286598601 + +chr1 6613810 6613823 GLIS2_MA0736.1 6.190648667594417 + +chr1 6614230 6614243 GLIS2_MA0736.1 6.765073138517028 + +chr1 6625188 6625201 GLIS2_MA0736.1 8.534009142273797 - +chr1 6784833 6784846 GLIS2_MA0736.1 10.860847346148695 + +chr1 6785725 6785738 GLIS2_MA0736.1 5.590912783972810 - +chr1 7954008 7954021 GLIS2_MA0736.1 6.577445580734476 + +chr1 7954370 7954383 GLIS2_MA0736.1 6.749873091019773 - +chr1 7954373 7954386 GLIS2_MA0736.1 7.274248731826934 - +chr1 7961521 7961534 GLIS2_MA0736.1 11.249056323373347 - +chr1 7961725 7961738 GLIS2_MA0736.1 5.706058457565611 - +chr1 8703431 8703444 GLIS2_MA0736.1 8.483680373678713 + +chr1 8818043 8818056 GLIS2_MA0736.1 6.559319700167686 + +chr1 9069419 9069432 GLIS2_MA0736.1 7.202673840152511 + +chr1 9182430 9182443 GLIS2_MA0736.1 9.630699481136414 - +chr1 9539821 9539834 GLIS2_MA0736.1 5.757733259605145 + +chr1 9589059 9589072 GLIS2_MA0736.1 7.945371166296419 + +chr1 9589118 9589131 GLIS2_MA0736.1 7.223846804157229 + +chr1 9689404 9689417 GLIS2_MA0736.1 5.709053642330186 - +chr1 10210808 10210821 GLIS2_MA0736.1 8.206042520386632 + +chr1 10399217 10399230 GLIS2_MA0736.1 6.888025730576866 - +chr1 10430679 10430692 GLIS2_MA0736.1 8.158462610571087 + +chr1 10472492 10472505 GLIS2_MA0736.1 6.206283160903044 - +chr1 10965160 10965173 GLIS2_MA0736.1 6.475996980513887 - +chr1 11012932 11012945 GLIS2_MA0736.1 7.191347540155084 - +chr1 11273352 11273365 GLIS2_MA0736.1 7.173136305293029 - +chr1 11478833 11478846 GLIS2_MA0736.1 5.752089007655238 + +chr1 11680976 11680989 GLIS2_MA0736.1 6.681067832518967 + +chr1 11681080 11681093 GLIS2_MA0736.1 5.922050863883874 - +chr1 11736165 11736178 GLIS2_MA0736.1 7.275142096107490 + +chr1 11736363 11736376 GLIS2_MA0736.1 6.414195125764662 + +chr1 11736445 11736458 GLIS2_MA0736.1 5.948757574344547 - +chr1 11806047 11806060 GLIS2_MA0736.1 5.591734443268720 + +chr1 11806269 11806282 GLIS2_MA0736.1 6.990424403936666 - +chr1 11806408 11806421 GLIS2_MA0736.1 5.590140436704918 - +chr1 12436213 12436226 GLIS2_MA0736.1 5.674157764348587 - +chr1 13700665 13700678 GLIS2_MA0736.1 6.063075449060330 + +chr1 13700667 13700680 GLIS2_MA0736.1 6.063075449060330 - +chr1 14599572 14599585 GLIS2_MA0736.1 11.256486274258725 + +chr1 15409724 15409737 GLIS2_MA0736.1 11.731333386935646 - +chr1 15584760 15584773 GLIS2_MA0736.1 5.653059169241478 - +chr1 15603441 15603454 GLIS2_MA0736.1 6.879121794800128 - +chr1 15617333 15617346 GLIS2_MA0736.1 8.318952360809240 + +chr1 15684661 15684674 GLIS2_MA0736.1 5.761643979320120 + +chr1 15684721 15684734 GLIS2_MA0736.1 7.277401478796788 - +chr1 15835206 15835219 GLIS2_MA0736.1 6.166079446477539 - +chr1 15847911 15847924 GLIS2_MA0736.1 6.542753568679465 - +chr1 15975880 15975893 GLIS2_MA0736.1 6.120139944999820 + +chr1 16206589 16206602 GLIS2_MA0736.1 6.585105279072590 + +chr1 16367584 16367597 GLIS2_MA0736.1 10.039608617329815 + +chr1 16644793 16644806 GLIS2_MA0736.1 6.860305142928724 + +chr1 17011627 17011640 GLIS2_MA0736.1 6.947476489921487 - +chr1 17437818 17437831 GLIS2_MA0736.1 7.121987090391033 - +chr1 18927823 18927836 GLIS2_MA0736.1 5.648232754264570 + +chr1 19209828 19209841 GLIS2_MA0736.1 6.419903969448104 + +chr1 19312250 19312263 GLIS2_MA0736.1 6.127917150730162 - +chr1 19312390 19312403 GLIS2_MA0736.1 7.922317960389503 - +chr1 19485483 19485496 GLIS2_MA0736.1 6.583230517071081 + +chr1 19485613 19485626 GLIS2_MA0736.1 7.489830555139935 + +chr1 19597194 19597207 GLIS2_MA0736.1 6.510860398174970 - +chr1 19597258 19597271 GLIS2_MA0736.1 6.036612437951923 - +chr1 19799776 19799789 GLIS2_MA0736.1 8.811694734875616 - +chr1 20633390 20633403 GLIS2_MA0736.1 6.670271215948611 + +chr1 20787362 20787375 GLIS2_MA0736.1 6.318024830779973 - +chr1 21176456 21176469 GLIS2_MA0736.1 7.914715259860629 - +chr1 22052844 22052857 GLIS2_MA0736.1 10.521621883810351 - +chr1 22451814 22451827 GLIS2_MA0736.1 6.243435265594636 - +chr1 23484686 23484699 GLIS2_MA0736.1 5.538935187989551 + +chr1 23720601 23720614 GLIS2_MA0736.1 7.312232043691333 + +chr1 23743965 23743978 GLIS2_MA0736.1 6.351577263221634 + +chr1 23778344 23778357 GLIS2_MA0736.1 7.019885245362374 + +chr1 23838689 23838702 GLIS2_MA0736.1 5.909312595101061 + +chr1 23838725 23838738 GLIS2_MA0736.1 5.909312595101061 + +chr1 24930449 24930462 GLIS2_MA0736.1 7.127407873278113 + +chr1 24947636 24947649 GLIS2_MA0736.1 5.672084972765941 + +chr1 24947664 24947677 GLIS2_MA0736.1 7.573636153525408 - +chr1 25022452 25022465 GLIS2_MA0736.1 5.668483934543679 - +chr1 25022541 25022554 GLIS2_MA0736.1 5.815582382199895 - +chr1 25022597 25022610 GLIS2_MA0736.1 7.541663185035976 - +chr1 25232572 25232585 GLIS2_MA0736.1 5.639397201637902 - +chr1 25239954 25239967 GLIS2_MA0736.1 8.183577609362997 - +chr1 25247748 25247761 GLIS2_MA0736.1 6.281651400193072 - +chr1 25820533 25820546 GLIS2_MA0736.1 6.252014515476443 - +chr1 25859454 25859467 GLIS2_MA0736.1 7.639187934207884 - +chr1 25906521 25906534 GLIS2_MA0736.1 8.486984300740430 + +chr1 25906547 25906560 GLIS2_MA0736.1 6.302986670886443 + +chr1 26110990 26111003 GLIS2_MA0736.1 12.158169337289621 - +chr1 26234404 26234417 GLIS2_MA0736.1 5.977874684440092 - +chr1 26336528 26336541 GLIS2_MA0736.1 9.097074523855028 - +chr1 26336583 26336596 GLIS2_MA0736.1 9.239832880987567 + +chr1 26472491 26472504 GLIS2_MA0736.1 5.841932568263151 + +chr1 26473191 26473204 GLIS2_MA0736.1 5.647359569882376 - 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7.179887838020592 - +chr1 35930704 35930717 GLIS2_MA0736.1 5.958926100742759 - +chr1 36149505 36149518 GLIS2_MA0736.1 7.425913587047070 + +chr1 36156055 36156068 GLIS2_MA0736.1 5.675999185704088 - +chr1 36156094 36156107 GLIS2_MA0736.1 6.513349995899897 + +chr1 36385789 36385802 GLIS2_MA0736.1 8.816033059684584 - +chr1 36464285 36464298 GLIS2_MA0736.1 6.842257630987103 + +chr1 37514809 37514822 GLIS2_MA0736.1 6.667067145460313 + +chr1 37807743 37807756 GLIS2_MA0736.1 6.022958919320756 + +chr1 38873262 38873275 GLIS2_MA0736.1 6.362527489996499 + +chr1 38873569 38873582 GLIS2_MA0736.1 6.583025469808190 - +chr1 38991038 38991051 GLIS2_MA0736.1 8.572262675520662 - +chr1 39799572 39799585 GLIS2_MA0736.1 5.723242271831971 + +chr1 39817245 39817258 GLIS2_MA0736.1 5.723242271831971 - +chr1 39902380 39902393 GLIS2_MA0736.1 8.154828715929378 - +chr1 39955396 39955409 GLIS2_MA0736.1 6.133083456989658 + +chr1 39960835 39960848 GLIS2_MA0736.1 6.842210913249025 - +chr1 40450453 40450466 GLIS2_MA0736.1 5.592824607363701 + +chr1 40477331 40477344 GLIS2_MA0736.1 7.836892933620412 - +chr1 40531504 40531517 GLIS2_MA0736.1 5.953914409040710 + +chr1 40692112 40692125 GLIS2_MA0736.1 7.045593600420192 - +chr1 40692263 40692276 GLIS2_MA0736.1 12.082360432827588 + +chr1 40979846 40979859 GLIS2_MA0736.1 6.582005340655682 - +chr1 41361193 41361206 GLIS2_MA0736.1 7.315206754762624 + +chr1 41361388 41361401 GLIS2_MA0736.1 6.292572073663186 + +chr1 42035678 42035691 GLIS2_MA0736.1 6.302986670886443 + +chr1 42335040 42335053 GLIS2_MA0736.1 8.508466140897315 - +chr1 42335602 42335615 GLIS2_MA0736.1 6.049360349560728 + +chr1 42456360 42456373 GLIS2_MA0736.1 5.779213577500949 + +chr1 42682603 42682616 GLIS2_MA0736.1 5.694192289601497 + +chr1 42767026 42767039 GLIS2_MA0736.1 7.600016632811132 + +chr1 42767451 42767464 GLIS2_MA0736.1 8.717302993625449 - +chr1 42924254 42924267 GLIS2_MA0736.1 5.847443812094749 + +chr1 43368051 43368064 GLIS2_MA0736.1 7.425643268746882 - +chr1 43368444 43368457 GLIS2_MA0736.1 5.723916669429499 - +chr1 44739645 44739658 GLIS2_MA0736.1 8.075268280992910 + +chr1 45206451 45206464 GLIS2_MA0736.1 8.054919855459813 - +chr1 45327252 45327265 GLIS2_MA0736.1 9.632209683201340 - +chr1 45339789 45339802 GLIS2_MA0736.1 6.803376217251047 + +chr1 45339973 45339986 GLIS2_MA0736.1 7.509747225320377 + +chr1 45521635 45521648 GLIS2_MA0736.1 12.220884600458705 - +chr1 45584782 45584795 GLIS2_MA0736.1 5.617585994327410 - +chr1 45803799 45803812 GLIS2_MA0736.1 6.004497259984130 - +chr1 46198450 46198463 GLIS2_MA0736.1 7.889006904802812 + +chr1 46302224 46302237 GLIS2_MA0736.1 6.107267682478779 + +chr1 46302271 46302284 GLIS2_MA0736.1 5.803893076734180 - +chr1 46302888 46302901 GLIS2_MA0736.1 6.559319700167686 + +chr1 46303050 46303063 GLIS2_MA0736.1 6.559319700167686 + +chr1 46616532 46616545 GLIS2_MA0736.1 8.777629930341002 + +chr1 47436967 47436980 GLIS2_MA0736.1 6.731826146586791 - +chr1 50333238 50333251 GLIS2_MA0736.1 6.730274760909915 + +chr1 50969338 50969351 GLIS2_MA0736.1 8.056462545095407 - +chr1 50977631 50977644 GLIS2_MA0736.1 6.538295686628659 + +chr1 51235041 51235054 GLIS2_MA0736.1 10.015646555250690 - +chr1 51236409 51236422 GLIS2_MA0736.1 6.697518838979445 + +chr1 51236458 51236471 GLIS2_MA0736.1 11.430105924437969 - +chr1 51518499 51518512 GLIS2_MA0736.1 5.643224927683106 - +chr1 51519004 51519017 GLIS2_MA0736.1 8.197834414716848 - +chr1 51617025 51617038 GLIS2_MA0736.1 6.873884939845643 + +chr1 51617040 51617053 GLIS2_MA0736.1 7.669025246437906 + +chr1 51729553 51729566 GLIS2_MA0736.1 10.599870135297577 + +chr1 52056544 52056557 GLIS2_MA0736.1 8.791439619829939 - +chr1 52404017 52404030 GLIS2_MA0736.1 7.922578658953316 + +chr1 52553094 52553107 GLIS2_MA0736.1 10.494189546329483 - +chr1 52842671 52842684 GLIS2_MA0736.1 5.594299742737289 - +chr1 52843174 52843187 GLIS2_MA0736.1 7.472005276932544 - +chr1 53739325 53739338 GLIS2_MA0736.1 6.913734085634683 - +chr1 53945615 53945628 GLIS2_MA0736.1 7.773125048983822 + 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5.920661920246895 + +chr1 65148131 65148144 GLIS2_MA0736.1 9.825137936706680 - +chr1 65419960 65419973 GLIS2_MA0736.1 6.364275947308443 + +chr1 66351974 66351987 GLIS2_MA0736.1 7.555210222492173 + +chr1 66930202 66930215 GLIS2_MA0736.1 6.748098569340169 - +chr1 67430156 67430169 GLIS2_MA0736.1 6.128751717217446 + +chr1 67430780 67430793 GLIS2_MA0736.1 6.008312979460383 - +chr1 67685021 67685034 GLIS2_MA0736.1 5.753482411770308 + +chr1 67685859 67685872 GLIS2_MA0736.1 8.255167384119554 - +chr1 67685954 67685967 GLIS2_MA0736.1 6.301024924582182 - +chr1 67686276 67686289 GLIS2_MA0736.1 6.775473929907139 + +chr1 67686341 67686354 GLIS2_MA0736.1 7.857208160215015 + +chr1 68496651 68496664 GLIS2_MA0736.1 6.413938186667367 + +chr1 74732640 74732653 GLIS2_MA0736.1 5.580761918516211 - +chr1 76074490 76074503 GLIS2_MA0736.1 6.727377127429428 + +chr1 77683075 77683088 GLIS2_MA0736.1 5.740302103712589 - +chr1 77759785 77759798 GLIS2_MA0736.1 5.942062961435754 - +chr1 79694649 79694662 GLIS2_MA0736.1 6.640378673283600 - +chr1 81801512 81801525 GLIS2_MA0736.1 6.507810608069949 - +chr1 84077904 84077917 GLIS2_MA0736.1 6.201390036769505 - +chr1 84078494 84078507 GLIS2_MA0736.1 8.196984073826409 - +chr1 84298410 84298423 GLIS2_MA0736.1 5.691536627132294 - +chr1 84598849 84598862 GLIS2_MA0736.1 5.626836896579907 - +chr1 84997390 84997403 GLIS2_MA0736.1 5.808231401543148 + +chr1 85061950 85061963 GLIS2_MA0736.1 9.752401340357418 - +chr1 85200632 85200645 GLIS2_MA0736.1 5.958926100742759 - +chr1 86395991 86396004 GLIS2_MA0736.1 5.598728682974492 + +chr1 86396174 86396187 GLIS2_MA0736.1 7.745290109305055 - +chr1 86914887 86914900 GLIS2_MA0736.1 5.538013885710511 - +chr1 86914997 86915010 GLIS2_MA0736.1 6.396805100752569 + +chr1 87151608 87151621 GLIS2_MA0736.1 6.080451592805014 - +chr1 87151619 87151632 GLIS2_MA0736.1 6.011024697668162 + +chr1 87152070 87152083 GLIS2_MA0736.1 9.416998630608019 - +chr1 88992659 88992672 GLIS2_MA0736.1 9.214124525929750 - +chr1 89524492 89524505 GLIS2_MA0736.1 5.707125277905176 + +chr1 89525467 89525480 GLIS2_MA0736.1 6.523350349962554 + +chr1 89995019 89995032 GLIS2_MA0736.1 7.570261982160583 + +chr1 89995324 89995337 GLIS2_MA0736.1 12.486178477107531 - +chr1 90358646 90358659 GLIS2_MA0736.1 8.030474205364985 - +chr1 91021701 91021714 GLIS2_MA0736.1 8.606817455916731 + +chr1 91404360 91404373 GLIS2_MA0736.1 7.382780999920158 + +chr1 91501358 91501371 GLIS2_MA0736.1 6.577667015846714 + +chr1 92486249 92486262 GLIS2_MA0736.1 6.866012734320615 - +chr1 92961179 92961192 GLIS2_MA0736.1 6.947476489921487 - +chr1 93079214 93079227 GLIS2_MA0736.1 9.482412085442292 + +chr1 93346536 93346549 GLIS2_MA0736.1 7.841231258429380 + +chr1 93607844 93607857 GLIS2_MA0736.1 6.187937881738302 + +chr1 93680971 93680984 GLIS2_MA0736.1 5.980097557725636 + +chr1 94854717 94854730 GLIS2_MA0736.1 5.675999185704088 + +chr1 94926980 94926993 GLIS2_MA0736.1 7.366620223087641 - +chr1 97920738 97920751 GLIS2_MA0736.1 6.603293728102191 + +chr1 99686029 99686042 GLIS2_MA0736.1 8.224845050747344 + +chr1 99759287 99759300 GLIS2_MA0736.1 7.382361047538095 + +chr1 99970152 99970165 GLIS2_MA0736.1 6.223633089529806 - +chr1 100351906 100351919 GLIS2_MA0736.1 7.595210076263305 - +chr1 100353155 100353168 GLIS2_MA0736.1 7.679398405951813 + +chr1 101128320 101128333 GLIS2_MA0736.1 8.299398803007460 - +chr1 101236463 101236476 GLIS2_MA0736.1 10.390162705679527 - +chr1 101236809 101236822 GLIS2_MA0736.1 5.659213346404696 + +chr1 101236826 101236839 GLIS2_MA0736.1 6.711889561799707 - +chr1 104878673 104878686 GLIS2_MA0736.1 8.299398803007460 + +chr1 107141533 107141546 GLIS2_MA0736.1 7.850531731892421 + +chr1 107141740 107141753 GLIS2_MA0736.1 7.396685230722653 - +chr1 107777555 107777568 GLIS2_MA0736.1 6.338580532857946 - +chr1 107965413 107965426 GLIS2_MA0736.1 6.583247680546302 - +chr1 108560027 108560040 GLIS2_MA0736.1 6.232031222846135 - +chr1 108561155 108561168 GLIS2_MA0736.1 6.350291661452188 - +chr1 108747080 108747093 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9.122593061129360 - +chr1 112956686 112956699 GLIS2_MA0736.1 6.771675417590782 - +chr1 113390609 113390622 GLIS2_MA0736.1 7.790313289061279 + +chr1 113390876 113390889 GLIS2_MA0736.1 7.016891035824461 + +chr1 113812126 113812139 GLIS2_MA0736.1 8.192008710887510 + +chr1 113880764 113880777 GLIS2_MA0736.1 6.838285277325911 + +chr1 113929834 113929847 GLIS2_MA0736.1 5.880430043552729 - +chr1 114109091 114109104 GLIS2_MA0736.1 6.958998645545450 - +chr1 114780470 114780483 GLIS2_MA0736.1 6.361635546097460 + +chr1 115641784 115641797 GLIS2_MA0736.1 5.617512089320931 - +chr1 116570619 116570632 GLIS2_MA0736.1 6.479052102579821 - +chr1 117059676 117059689 GLIS2_MA0736.1 11.034190343180201 - +chr1 117059751 117059764 GLIS2_MA0736.1 6.533541627796380 + +chr1 117121904 117121917 GLIS2_MA0736.1 5.804555247854382 - +chr1 119647746 119647759 GLIS2_MA0736.1 6.290763929434869 + +chr1 119662252 119662265 GLIS2_MA0736.1 7.159865959362508 - +chr1 120415527 120415540 GLIS2_MA0736.1 7.203469893107270 - 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150149813 GLIS2_MA0736.1 5.938514974945894 - +chr1 150163234 150163247 GLIS2_MA0736.1 9.329134381847041 + +chr1 150234683 150234696 GLIS2_MA0736.1 7.317541776288691 + +chr1 150268883 150268896 GLIS2_MA0736.1 8.561740842358420 - +chr1 150562412 150562425 GLIS2_MA0736.1 5.953837285692515 - +chr1 150562543 150562556 GLIS2_MA0736.1 6.520641236298349 + +chr1 150579475 150579488 GLIS2_MA0736.1 6.239842582524979 + +chr1 150974454 150974467 GLIS2_MA0736.1 5.883166040560271 + +chr1 151008341 151008354 GLIS2_MA0736.1 5.532031088710611 + +chr1 151008413 151008426 GLIS2_MA0736.1 7.960217798665950 - +chr1 151070784 151070797 GLIS2_MA0736.1 5.961254633350038 - +chr1 151156471 151156484 GLIS2_MA0736.1 6.737665633425562 + +chr1 151281591 151281604 GLIS2_MA0736.1 7.711293376026482 + +chr1 151282437 151282450 GLIS2_MA0736.1 5.816499662566764 - +chr1 151327278 151327291 GLIS2_MA0736.1 7.049690236324009 + +chr1 151612265 151612278 GLIS2_MA0736.1 9.497254552111366 - +chr1 151612454 151612467 GLIS2_MA0736.1 6.376072527243688 - +chr1 151909685 151909698 GLIS2_MA0736.1 7.472275595232731 + +chr1 152036617 152036630 GLIS2_MA0736.1 7.102869923399141 + +chr1 152048318 152048331 GLIS2_MA0736.1 5.663179049679949 - +chr1 153535888 153535901 GLIS2_MA0736.1 6.277042506875079 + +chr1 153634480 153634493 GLIS2_MA0736.1 7.245371804976923 + +chr1 153728249 153728262 GLIS2_MA0736.1 5.585547831523760 + +chr1 153742821 153742834 GLIS2_MA0736.1 5.919293238890457 - +chr1 153783680 153783693 GLIS2_MA0736.1 7.276981526414724 - +chr1 154221130 154221143 GLIS2_MA0736.1 8.130543757759913 + +chr1 154221161 154221174 GLIS2_MA0736.1 5.673760779449569 + +chr1 154221190 154221203 GLIS2_MA0736.1 6.921768134863670 + +chr1 154445376 154445389 GLIS2_MA0736.1 7.708607941247167 - +chr1 154608414 154608427 GLIS2_MA0736.1 6.151006918093952 + +chr1 154870386 154870399 GLIS2_MA0736.1 10.688601228836101 + +chr1 154937050 154937063 GLIS2_MA0736.1 10.318012351740759 - +chr1 154961505 154961518 GLIS2_MA0736.1 5.921558334845576 - 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156505151 GLIS2_MA0736.1 7.410439187483217 + +chr1 156660268 156660281 GLIS2_MA0736.1 8.684831648177195 - +chr1 156751716 156751729 GLIS2_MA0736.1 6.036342119651736 + +chr1 156751798 156751811 GLIS2_MA0736.1 7.215393953238233 + +chr1 157046058 157046071 GLIS2_MA0736.1 9.384097825257657 + +chr1 157138179 157138192 GLIS2_MA0736.1 7.308948494336027 + +chr1 157403636 157403649 GLIS2_MA0736.1 6.616455920412060 + +chr1 158285977 158285990 GLIS2_MA0736.1 5.569932179505385 - +chr1 160098514 160098527 GLIS2_MA0736.1 6.468797498006594 - +chr1 160712046 160712059 GLIS2_MA0736.1 5.783023179812513 - +chr1 161045213 161045226 GLIS2_MA0736.1 5.891246398690272 + +chr1 161098761 161098774 GLIS2_MA0736.1 7.833712160861663 + +chr1 161159586 161159599 GLIS2_MA0736.1 6.953300062802869 - +chr1 161159608 161159621 GLIS2_MA0736.1 5.988771632794772 - +chr1 161159707 161159720 GLIS2_MA0736.1 6.402357181940097 - +chr1 161185450 161185463 GLIS2_MA0736.1 6.836925236345920 + +chr1 161314330 161314343 GLIS2_MA0736.1 5.627589886729316 + +chr1 161524170 161524183 GLIS2_MA0736.1 6.912244122312265 + +chr1 161612420 161612433 GLIS2_MA0736.1 6.155102097685699 - +chr1 161726736 161726749 GLIS2_MA0736.1 6.989116417805631 - +chr1 165631972 165631985 GLIS2_MA0736.1 6.788459552115809 - +chr1 165698751 165698764 GLIS2_MA0736.1 7.253094465038847 + +chr1 165828666 165828679 GLIS2_MA0736.1 5.651072076041439 - +chr1 166166755 166166768 GLIS2_MA0736.1 9.249375043206360 + +chr1 167221016 167221029 GLIS2_MA0736.1 8.563752678075000 + +chr1 167221553 167221566 GLIS2_MA0736.1 5.526725497579757 - +chr1 167455759 167455772 GLIS2_MA0736.1 6.926427438065014 - +chr1 167553851 167553864 GLIS2_MA0736.1 7.597805378956167 - +chr1 167936867 167936880 GLIS2_MA0736.1 8.305853591666528 + +chr1 168225875 168225888 GLIS2_MA0736.1 6.302986670886443 + +chr1 171741502 171741515 GLIS2_MA0736.1 6.911973804012080 + +chr1 172443922 172443935 GLIS2_MA0736.1 5.556270849852689 - +chr1 172532955 172532968 GLIS2_MA0736.1 6.417035327169542 - 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181089488 GLIS2_MA0736.1 11.472473683749383 + +chr1 181089522 181089535 GLIS2_MA0736.1 7.404185761523904 + +chr1 181104813 181104826 GLIS2_MA0736.1 5.758010554362761 - +chr1 181485880 181485893 GLIS2_MA0736.1 5.934368256137368 - +chr1 182029685 182029698 GLIS2_MA0736.1 8.495123719127081 - +chr1 182029975 182029988 GLIS2_MA0736.1 8.274812923557171 + diff --git a/demo/known_tfbs_chr1_hg38/GLIS3_MA0737.1.bed b/demo/known_tfbs_chr1_hg38/GLIS3_MA0737.1.bed new file mode 100644 index 0000000..cf42ca0 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/GLIS3_MA0737.1.bed @@ -0,0 +1,234 @@ +chr1 1019568 1019581 GLIS3_MA0737.1 4.132850300706244 - +chr1 1157846 1157859 GLIS3_MA0737.1 3.344331084916305 - +chr1 1157894 1157907 GLIS3_MA0737.1 6.433263291898765 - +chr1 1399693 1399706 GLIS3_MA0737.1 2.062812388940713 - +chr1 2300858 2300871 GLIS3_MA0737.1 9.883660651792566 + +chr1 2548370 2548383 GLIS3_MA0737.1 7.347531424765593 + +chr1 2548567 2548580 GLIS3_MA0737.1 2.213279592773957 - +chr1 2585692 2585705 GLIS3_MA0737.1 3.437585029514242 - +chr1 2586323 2586336 GLIS3_MA0737.1 4.158922297448195 + +chr1 3491485 3491498 GLIS3_MA0737.1 2.557348861814618 - +chr1 3625229 3625242 GLIS3_MA0737.1 4.176148858347299 + +chr1 3900514 3900527 GLIS3_MA0737.1 7.558598526565499 - +chr1 3901172 3901185 GLIS3_MA0737.1 3.827932340143498 + +chr1 4267811 4267824 GLIS3_MA0737.1 3.498363942580810 - +chr1 5992097 5992110 GLIS3_MA0737.1 2.779710134936400 + +chr1 6026819 6026832 GLIS3_MA0737.1 4.359815774876715 - +chr1 6490173 6490186 GLIS3_MA0737.1 6.196194911041925 + +chr1 6784833 6784846 GLIS3_MA0737.1 4.761316916486213 + +chr1 7954008 7954021 GLIS3_MA0737.1 4.296741703957145 + +chr1 7961521 7961534 GLIS3_MA0737.1 11.609525565553144 - +chr1 7961725 7961738 GLIS3_MA0737.1 3.221604309849819 - +chr1 8525611 8525624 GLIS3_MA0737.1 2.367438774084166 + +chr1 8878809 8878822 GLIS3_MA0737.1 4.432958015580637 + +chr1 9182430 9182443 GLIS3_MA0737.1 2.615840055811753 - +chr1 10210703 10210716 GLIS3_MA0737.1 4.497421837830599 + +chr1 10986142 10986155 GLIS3_MA0737.1 3.183672804239814 - +chr1 11012418 11012431 GLIS3_MA0737.1 2.293191374897336 - +chr1 11012932 11012945 GLIS3_MA0737.1 3.804155987627536 - +chr1 11680976 11680989 GLIS3_MA0737.1 2.929052729522473 + +chr1 11736445 11736458 GLIS3_MA0737.1 3.480128685842915 - +chr1 11805760 11805773 GLIS3_MA0737.1 3.985645797448084 + +chr1 11980173 11980186 GLIS3_MA0737.1 4.798323952480504 + +chr1 12052105 12052118 GLIS3_MA0737.1 2.604612729704448 + +chr1 13713299 13713312 GLIS3_MA0737.1 2.897766738964386 - +chr1 14599572 14599585 GLIS3_MA0737.1 4.326007656056672 + +chr1 15409724 15409737 GLIS3_MA0737.1 6.566294573509549 - +chr1 15584760 15584773 GLIS3_MA0737.1 3.271990677534294 - +chr1 15617333 15617346 GLIS3_MA0737.1 2.449877994498154 + +chr1 15684721 15684734 GLIS3_MA0737.1 2.357112650510560 - +chr1 16206589 16206602 GLIS3_MA0737.1 4.791744400277429 + +chr1 16237271 16237284 GLIS3_MA0737.1 2.916838389456350 + +chr1 16367077 16367090 GLIS3_MA0737.1 2.571491384375703 + +chr1 16367584 16367597 GLIS3_MA0737.1 4.463137854002807 + +chr1 16367693 16367706 GLIS3_MA0737.1 2.883340658992346 - +chr1 16513798 16513811 GLIS3_MA0737.1 2.091802978978166 - +chr1 16544910 16544923 GLIS3_MA0737.1 6.835556278475015 - +chr1 16613789 16613802 GLIS3_MA0737.1 2.249598621094757 + +chr1 16644793 16644806 GLIS3_MA0737.1 2.635985856881147 + +chr1 16728365 16728378 GLIS3_MA0737.1 6.835556278475015 + +chr1 17011627 17011640 GLIS3_MA0737.1 3.499859148498235 - +chr1 17437818 17437831 GLIS3_MA0737.1 3.422957243067409 - +chr1 19485613 19485626 GLIS3_MA0737.1 4.401277649250621 + +chr1 19597194 19597207 GLIS3_MA0737.1 2.178976668606595 - +chr1 19800195 19800208 GLIS3_MA0737.1 7.645202886472756 + +chr1 19882457 19882470 GLIS3_MA0737.1 2.491678783917400 - +chr1 20661527 20661540 GLIS3_MA0737.1 3.625084774994717 - +chr1 22052844 22052857 GLIS3_MA0737.1 8.735217974565078 - +chr1 23720546 23720559 GLIS3_MA0737.1 2.860716618447790 + +chr1 24947636 24947649 GLIS3_MA0737.1 6.034002763259158 + +chr1 25232572 25232585 GLIS3_MA0737.1 3.196903055866329 - +chr1 25239823 25239836 GLIS3_MA0737.1 5.123569291413353 + +chr1 25247430 25247443 GLIS3_MA0737.1 2.157493773929601 + +chr1 25616572 25616585 GLIS3_MA0737.1 3.117866329085005 - +chr1 25820533 25820546 GLIS3_MA0737.1 5.531237646594488 - +chr1 25906521 25906534 GLIS3_MA0737.1 5.297244885829846 + +chr1 26110990 26111003 GLIS3_MA0737.1 5.545568958738298 - +chr1 26336473 26336486 GLIS3_MA0737.1 2.268337733294381 + +chr1 26541950 26541963 GLIS3_MA0737.1 3.611583358327374 - +chr1 26621006 26621019 GLIS3_MA0737.1 3.585047719388821 - +chr1 26787455 26787468 GLIS3_MA0737.1 2.519907389683269 + +chr1 26787748 26787761 GLIS3_MA0737.1 2.910180551013373 - +chr1 26788359 26788372 GLIS3_MA0737.1 5.016333796615313 + +chr1 27234514 27234527 GLIS3_MA0737.1 4.611388407164575 - +chr1 27357571 27357584 GLIS3_MA0737.1 3.824795951398691 + +chr1 27872699 27872712 GLIS3_MA0737.1 3.771314313578036 - +chr1 28370005 28370018 GLIS3_MA0737.1 6.232397745908604 + +chr1 28518437 28518450 GLIS3_MA0737.1 5.159669832483030 + +chr1 28553343 28553356 GLIS3_MA0737.1 4.048546529496645 - +chr1 29181594 29181607 GLIS3_MA0737.1 2.274977276123686 - +chr1 31483416 31483429 GLIS3_MA0737.1 2.388950092871838 + +chr1 31789317 31789330 GLIS3_MA0737.1 6.554411303245649 + +chr1 32108364 32108377 GLIS3_MA0737.1 2.824745705376104 + +chr1 32108401 32108414 GLIS3_MA0737.1 6.273413057507264 - +chr1 32520782 32520795 GLIS3_MA0737.1 2.495612932656774 + +chr1 32520917 32520930 GLIS3_MA0737.1 4.964807104432046 + +chr1 33903491 33903504 GLIS3_MA0737.1 4.163298825229896 + +chr1 34530800 34530813 GLIS3_MA0737.1 6.232397745908604 + +chr1 35769818 35769831 GLIS3_MA0737.1 4.478658451135193 - +chr1 35930704 35930717 GLIS3_MA0737.1 4.250977457243049 - +chr1 36385789 36385802 GLIS3_MA0737.1 4.284433059218754 - +chr1 36386203 36386216 GLIS3_MA0737.1 4.416198622731651 + +chr1 38873569 38873582 GLIS3_MA0737.1 5.319801105786093 - 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- +chr1 45304322 45304335 GLIS3_MA0737.1 2.417465992118529 + +chr1 45327252 45327265 GLIS3_MA0737.1 8.727528710384194 - +chr1 45339789 45339802 GLIS3_MA0737.1 2.283500342866879 + +chr1 45339973 45339986 GLIS3_MA0737.1 2.893618098443755 + +chr1 45521635 45521648 GLIS3_MA0737.1 12.346682332293133 - +chr1 46133006 46133019 GLIS3_MA0737.1 2.542856973546543 - +chr1 46303121 46303134 GLIS3_MA0737.1 2.149146888032748 + +chr1 47436967 47436980 GLIS3_MA0737.1 3.966807271203057 - +chr1 48236880 48236893 GLIS3_MA0737.1 2.530704221679893 - +chr1 50333238 50333251 GLIS3_MA0737.1 4.486343902068870 + +chr1 50968362 50968375 GLIS3_MA0737.1 2.310013283743453 + +chr1 50969338 50969351 GLIS3_MA0737.1 2.701564223479754 - +chr1 51234977 51234990 GLIS3_MA0737.1 4.389323544039314 - +chr1 51235041 51235054 GLIS3_MA0737.1 9.006993058652192 - +chr1 51236008 51236021 GLIS3_MA0737.1 2.808787340896536 - +chr1 51236458 51236471 GLIS3_MA0737.1 2.711105333445182 - +chr1 51284920 51284933 GLIS3_MA0737.1 4.114222179865072 + +chr1 51729553 51729566 GLIS3_MA0737.1 8.514370882393576 + +chr1 52553094 52553107 GLIS3_MA0737.1 8.379097899140284 - +chr1 52843174 52843187 GLIS3_MA0737.1 3.184352910370228 - +chr1 56106871 56106884 GLIS3_MA0737.1 3.389455069628258 + +chr1 56821289 56821302 GLIS3_MA0737.1 10.871268709733398 - +chr1 58574264 58574277 GLIS3_MA0737.1 2.304943964414546 - +chr1 58784747 58784760 GLIS3_MA0737.1 10.570993513670118 + +chr1 61724925 61724938 GLIS3_MA0737.1 2.421213334883428 - +chr1 62436338 62436351 GLIS3_MA0737.1 2.265704006529027 + +chr1 62613410 62613423 GLIS3_MA0737.1 2.877115186701007 - +chr1 63594381 63594394 GLIS3_MA0737.1 6.293143520162586 - +chr1 65148131 65148144 GLIS3_MA0737.1 4.604268493969192 - +chr1 65419960 65419973 GLIS3_MA0737.1 2.952747186229231 + +chr1 65895302 65895315 GLIS3_MA0737.1 3.103708191701431 - +chr1 67430780 67430793 GLIS3_MA0737.1 2.110569582993286 - +chr1 67685859 67685872 GLIS3_MA0737.1 7.357652570919141 - +chr1 70221357 70221370 GLIS3_MA0737.1 5.502482449912164 - +chr1 70410800 70410813 GLIS3_MA0737.1 5.470449396025740 + +chr1 74653088 74653101 GLIS3_MA0737.1 4.238492965460536 + +chr1 77539243 77539256 GLIS3_MA0737.1 2.154972283055048 + +chr1 83405925 83405938 GLIS3_MA0737.1 2.875210402643873 + +chr1 84077805 84077818 GLIS3_MA0737.1 3.783756555866706 + +chr1 84078494 84078507 GLIS3_MA0737.1 8.492355562942345 - +chr1 84078538 84078551 GLIS3_MA0737.1 3.938455859411031 + +chr1 84573759 84573772 GLIS3_MA0737.1 5.661139984962227 - +chr1 84574547 84574560 GLIS3_MA0737.1 3.528258645728902 - +chr1 84690151 84690164 GLIS3_MA0737.1 2.699223657148542 + +chr1 84969965 84969978 GLIS3_MA0737.1 2.230505037549367 - +chr1 84997389 84997402 GLIS3_MA0737.1 2.289105666120236 + +chr1 85047931 85047944 GLIS3_MA0737.1 2.934030486821418 + +chr1 85061950 85061963 GLIS3_MA0737.1 4.644865475561395 - +chr1 85200632 85200645 GLIS3_MA0737.1 4.250977457243049 - +chr1 85464997 85465010 GLIS3_MA0737.1 2.139399637095504 - +chr1 86617208 86617221 GLIS3_MA0737.1 2.683284672503840 + +chr1 86914887 86914900 GLIS3_MA0737.1 3.731644343165445 - +chr1 87151619 87151632 GLIS3_MA0737.1 3.134489404341676 + +chr1 89995324 89995337 GLIS3_MA0737.1 10.891181361275125 - +chr1 90358646 90358659 GLIS3_MA0737.1 7.278729444105370 - +chr1 91022189 91022202 GLIS3_MA0737.1 2.502263494110853 + +chr1 91404360 91404373 GLIS3_MA0737.1 2.205529891998050 + +chr1 91885692 91885705 GLIS3_MA0737.1 2.224524752900261 - +chr1 92485145 92485158 GLIS3_MA0737.1 2.258393047054940 + +chr1 92486249 92486262 GLIS3_MA0737.1 2.661931433999636 - +chr1 92961179 92961192 GLIS3_MA0737.1 3.499859148498235 - +chr1 93346536 93346549 GLIS3_MA0737.1 3.593216441797535 + +chr1 93909226 93909239 GLIS3_MA0737.1 2.820562624029391 + +chr1 94926859 94926872 GLIS3_MA0737.1 2.329708646976538 + +chr1 94926980 94926993 GLIS3_MA0737.1 2.269802372816331 - +chr1 99686029 99686042 GLIS3_MA0737.1 4.849072282936415 + +chr1 99970152 99970165 GLIS3_MA0737.1 3.141537573432989 - +chr1 100351906 100351919 GLIS3_MA0737.1 4.249694890738110 - +chr1 100353155 100353168 GLIS3_MA0737.1 3.775317795616405 + +chr1 101128320 101128333 GLIS3_MA0737.1 4.356019376955456 - +chr1 101236463 101236476 GLIS3_MA0737.1 3.362569179787515 - +chr1 101236826 101236839 GLIS3_MA0737.1 2.615566880952844 - +chr1 101389532 101389545 GLIS3_MA0737.1 3.615262708866928 - +chr1 103517558 103517571 GLIS3_MA0737.1 3.594808408364051 - +chr1 104878671 104878684 GLIS3_MA0737.1 5.213273848137260 + +chr1 104878673 104878686 GLIS3_MA0737.1 4.356019376955456 + +chr1 107935024 107935037 GLIS3_MA0737.1 2.362142504016817 + +chr1 107964752 107964765 GLIS3_MA0737.1 7.485702006228070 - +chr1 108561155 108561168 GLIS3_MA0737.1 3.558251036135088 - +chr1 108747080 108747093 GLIS3_MA0737.1 2.265453581966822 + +chr1 108876867 108876880 GLIS3_MA0737.1 3.299638260501296 - +chr1 109075916 109075929 GLIS3_MA0737.1 2.930397452884826 - +chr1 109090842 109090855 GLIS3_MA0737.1 6.040268367130457 + +chr1 109620513 109620526 GLIS3_MA0737.1 9.910998243549940 - +chr1 110339058 110339071 GLIS3_MA0737.1 5.876959699656809 + +chr1 110384932 110384945 GLIS3_MA0737.1 3.656185058130071 - +chr1 111140353 111140366 GLIS3_MA0737.1 2.636137479621179 - +chr1 111448803 111448816 GLIS3_MA0737.1 2.658375260881165 - +chr1 112715155 112715168 GLIS3_MA0737.1 6.060187673443396 - +chr1 113390609 113390622 GLIS3_MA0737.1 3.449672507369242 + +chr1 113812126 113812139 GLIS3_MA0737.1 6.257054026827441 + +chr1 114716739 114716752 GLIS3_MA0737.1 5.399100215463221 + +chr1 114757466 114757479 GLIS3_MA0737.1 4.702602312850820 + +chr1 114780470 114780483 GLIS3_MA0737.1 2.387277921587089 + +chr1 115641784 115641797 GLIS3_MA0737.1 2.072339466254697 - +chr1 116571113 116571126 GLIS3_MA0737.1 2.265704006529027 + +chr1 116737916 116737929 GLIS3_MA0737.1 3.068616902678311 + +chr1 117059676 117059689 GLIS3_MA0737.1 12.451077983539818 - +chr1 117059751 117059764 GLIS3_MA0737.1 8.684765859174160 + +chr1 117606271 117606284 GLIS3_MA0737.1 3.144274179109661 - +chr1 119347950 119347963 GLIS3_MA0737.1 3.740923142541190 + +chr1 119565249 119565262 GLIS3_MA0737.1 3.647286414011776 - +chr1 119662252 119662265 GLIS3_MA0737.1 5.035568131358070 - +chr1 120415385 120415398 GLIS3_MA0737.1 2.600206054585048 - +chr1 120415527 120415540 GLIS3_MA0737.1 4.875512737571415 - +chr1 120914009 120914022 GLIS3_MA0737.1 8.806371289335477 - +chr1 121097522 121097535 GLIS3_MA0737.1 2.300586630951871 + +chr1 144419020 144419033 GLIS3_MA0737.1 2.682338536305981 - +chr1 144461149 144461162 GLIS3_MA0737.1 2.735452088761765 + +chr1 144461287 144461300 GLIS3_MA0737.1 2.600206054585048 + +chr1 144546339 144546352 GLIS3_MA0737.1 5.714892414321511 - +chr1 144551798 144551811 GLIS3_MA0737.1 2.598842932242709 + +chr1 145215067 145215080 GLIS3_MA0737.1 8.806371289335477 + +chr1 145216052 145216065 GLIS3_MA0737.1 9.952462632452784 - +chr1 145927647 145927660 GLIS3_MA0737.1 3.639959885848479 - +chr1 146387632 146387645 GLIS3_MA0737.1 7.554279419682130 + +chr1 146938391 146938404 GLIS3_MA0737.1 2.431718483058838 - +chr1 147172162 147172175 GLIS3_MA0737.1 2.368694673604488 + +chr1 148151483 148151496 GLIS3_MA0737.1 4.875512737571413 + +chr1 148152240 148152253 GLIS3_MA0737.1 2.431718483058837 + +chr1 148459030 148459043 GLIS3_MA0737.1 8.806371289335477 + +chr1 148522733 148522746 GLIS3_MA0737.1 2.184719835104560 - +chr1 149608113 149608126 GLIS3_MA0737.1 8.806371289335477 - +chr1 149792887 149792900 GLIS3_MA0737.1 2.300586630951871 + +chr1 150067082 150067095 GLIS3_MA0737.1 4.018089166597113 + diff --git a/demo/known_tfbs_chr1_hg38/GMEB2_MA0862.1.bed b/demo/known_tfbs_chr1_hg38/GMEB2_MA0862.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/GRHL1_MA0647.1.bed b/demo/known_tfbs_chr1_hg38/GRHL1_MA0647.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/GRHL2_MA1105.1.bed b/demo/known_tfbs_chr1_hg38/GRHL2_MA1105.1.bed new file mode 100644 index 0000000..e13fcbd --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/GRHL2_MA1105.1.bed @@ -0,0 +1,117 @@ +chr1 2227551 2227565 GRHL2_MA1105.1 7.104994850767870 - +chr1 8097752 8097766 GRHL2_MA1105.1 7.896667555467476 - +chr1 8182850 8182864 GRHL2_MA1105.1 7.565279868273985 + +chr1 8182851 8182865 GRHL2_MA1105.1 10.141197005825088 - +chr1 9037668 9037682 GRHL2_MA1105.1 7.256836202600812 - +chr1 9413766 9413780 GRHL2_MA1105.1 7.517832531487786 + +chr1 10495147 10495161 GRHL2_MA1105.1 8.002487858482473 + +chr1 10694385 10694399 GRHL2_MA1105.1 7.711314939736789 + +chr1 10985950 10985964 GRHL2_MA1105.1 7.867890739146482 + +chr1 10985951 10985965 GRHL2_MA1105.1 10.216277353326547 - +chr1 11908952 11908966 GRHL2_MA1105.1 8.122698713362723 + +chr1 11908953 11908967 GRHL2_MA1105.1 8.921477931325891 - +chr1 12079184 12079198 GRHL2_MA1105.1 7.965371572437059 - +chr1 15836197 15836211 GRHL2_MA1105.1 7.280326601746610 + +chr1 15836198 15836212 GRHL2_MA1105.1 7.738202726447426 - +chr1 21783388 21783402 GRHL2_MA1105.1 7.942424995380978 + +chr1 21783534 21783548 GRHL2_MA1105.1 7.873376875556028 + +chr1 23959079 23959093 GRHL2_MA1105.1 7.619147683933198 + +chr1 27659648 27659662 GRHL2_MA1105.1 7.111505909398039 + +chr1 28736583 28736597 GRHL2_MA1105.1 7.133529563061137 + +chr1 32394829 32394843 GRHL2_MA1105.1 7.444905783247103 + +chr1 32992893 32992907 GRHL2_MA1105.1 9.827518549179278 - +chr1 34360763 34360777 GRHL2_MA1105.1 7.957867275763841 - +chr1 34866555 34866569 GRHL2_MA1105.1 7.330443900477119 - +chr1 35031474 35031488 GRHL2_MA1105.1 7.760525454478628 - +chr1 36223972 36223986 GRHL2_MA1105.1 7.942715981662447 + +chr1 36386102 36386116 GRHL2_MA1105.1 9.132488107797965 + +chr1 36397515 36397529 GRHL2_MA1105.1 7.537337623119363 - +chr1 38028305 38028319 GRHL2_MA1105.1 8.722659136444086 + +chr1 39215400 39215414 GRHL2_MA1105.1 7.851855173479171 - +chr1 40374189 40374203 GRHL2_MA1105.1 8.152979131163031 + +chr1 44684573 44684587 GRHL2_MA1105.1 7.856955428188665 + +chr1 45584184 45584198 GRHL2_MA1105.1 7.113117105532954 - +chr1 45687006 45687020 GRHL2_MA1105.1 9.017567942978170 + +chr1 45687007 45687021 GRHL2_MA1105.1 8.244418812765280 - +chr1 46063117 46063131 GRHL2_MA1105.1 8.350010591574108 + +chr1 46616409 46616423 GRHL2_MA1105.1 7.583109939232155 + +chr1 48236995 48237009 GRHL2_MA1105.1 12.056413100001365 - +chr1 51518326 51518340 GRHL2_MA1105.1 10.466213545788735 - +chr1 51570386 51570400 GRHL2_MA1105.1 8.768495286424802 + +chr1 52055648 52055662 GRHL2_MA1105.1 7.408306533180427 + +chr1 59008133 59008147 GRHL2_MA1105.1 7.702448517525117 + +chr1 59008229 59008243 GRHL2_MA1105.1 7.135721506267467 - +chr1 62436377 62436391 GRHL2_MA1105.1 7.438428796713795 + +chr1 62809977 62809991 GRHL2_MA1105.1 9.667620634899894 + +chr1 64172885 64172899 GRHL2_MA1105.1 8.031477653280893 + +chr1 64172886 64172900 GRHL2_MA1105.1 7.270823936175022 - +chr1 64864225 64864239 GRHL2_MA1105.1 7.117551527334112 + +chr1 64864226 64864240 GRHL2_MA1105.1 9.695975083006900 - +chr1 64956707 64956721 GRHL2_MA1105.1 7.545487846177946 + +chr1 66374813 66374827 GRHL2_MA1105.1 7.391782681352808 + +chr1 66380529 66380543 GRHL2_MA1105.1 8.074338167798761 - +chr1 66396239 66396253 GRHL2_MA1105.1 8.385873501575322 + +chr1 66649034 66649048 GRHL2_MA1105.1 7.358697805928029 + +chr1 67166281 67166295 GRHL2_MA1105.1 7.194053703678188 + +chr1 70517699 70517713 GRHL2_MA1105.1 7.270892860166247 + +chr1 72433684 72433698 GRHL2_MA1105.1 7.564691334990012 + +chr1 72623543 72623557 GRHL2_MA1105.1 8.222587353109517 + +chr1 74517892 74517906 GRHL2_MA1105.1 9.050614237274960 + +chr1 74652807 74652821 GRHL2_MA1105.1 7.374247964658137 + +chr1 75785652 75785666 GRHL2_MA1105.1 9.855370636739735 + +chr1 76668176 76668190 GRHL2_MA1105.1 7.884107751301013 + +chr1 76668177 76668191 GRHL2_MA1105.1 8.799233546815181 - +chr1 77927862 77927876 GRHL2_MA1105.1 8.267185704641687 + +chr1 78650204 78650218 GRHL2_MA1105.1 8.029688534314992 - +chr1 79193498 79193512 GRHL2_MA1105.1 7.487570780704292 - +chr1 79694594 79694608 GRHL2_MA1105.1 8.736813189308181 + +chr1 79694595 79694609 GRHL2_MA1105.1 7.223165265774163 - +chr1 79694640 79694654 GRHL2_MA1105.1 9.224448802605238 + +chr1 79694933 79694947 GRHL2_MA1105.1 7.722091584028590 + +chr1 79777864 79777878 GRHL2_MA1105.1 10.136892877951123 + +chr1 80640384 80640398 GRHL2_MA1105.1 7.342758387564320 + +chr1 80640753 80640767 GRHL2_MA1105.1 8.130936637390985 + +chr1 80656169 80656183 GRHL2_MA1105.1 7.177932307745106 - +chr1 82153318 82153332 GRHL2_MA1105.1 10.199915447381979 + +chr1 83131164 83131178 GRHL2_MA1105.1 7.604695776249288 - +chr1 83131331 83131345 GRHL2_MA1105.1 7.390264357127786 - +chr1 83500585 83500599 GRHL2_MA1105.1 7.111601426688035 - +chr1 84152751 84152765 GRHL2_MA1105.1 9.047022060831944 - +chr1 84573990 84574004 GRHL2_MA1105.1 8.457583476747173 - +chr1 84574131 84574145 GRHL2_MA1105.1 8.020519338226114 - +chr1 84689895 84689909 GRHL2_MA1105.1 7.420063049663050 - +chr1 84854122 84854136 GRHL2_MA1105.1 8.603710008796867 + +chr1 84854501 84854515 GRHL2_MA1105.1 7.849051921872126 - +chr1 84945025 84945039 GRHL2_MA1105.1 7.100867637682995 - +chr1 84945693 84945707 GRHL2_MA1105.1 7.492929456071247 - +chr1 86419501 86419515 GRHL2_MA1105.1 10.212860975156662 - +chr1 86915117 86915131 GRHL2_MA1105.1 8.117187889274019 + +chr1 87449776 87449790 GRHL2_MA1105.1 9.154711589050081 - +chr1 88993207 88993221 GRHL2_MA1105.1 8.330391151339164 - +chr1 89287316 89287330 GRHL2_MA1105.1 9.264220125566851 + +chr1 89287317 89287331 GRHL2_MA1105.1 7.531912134702160 - +chr1 89363508 89363522 GRHL2_MA1105.1 7.279129977123725 + +chr1 89669946 89669960 GRHL2_MA1105.1 8.152467032253789 + +chr1 90358252 90358266 GRHL2_MA1105.1 7.514122826666122 + +chr1 90509669 90509683 GRHL2_MA1105.1 7.817288269921389 + +chr1 92483804 92483818 GRHL2_MA1105.1 7.881701556342328 + +chr1 92563682 92563696 GRHL2_MA1105.1 7.231552281227228 - +chr1 93879266 93879280 GRHL2_MA1105.1 7.182244833378293 + +chr1 94854644 94854658 GRHL2_MA1105.1 8.122052981414383 + +chr1 96955520 96955534 GRHL2_MA1105.1 7.461632482618045 + +chr1 99084610 99084624 GRHL2_MA1105.1 7.638097358611918 + +chr1 99758985 99758999 GRHL2_MA1105.1 9.450640686632862 + +chr1 99786682 99786696 GRHL2_MA1105.1 7.485242689624510 - +chr1 100077690 100077704 GRHL2_MA1105.1 8.491214071317462 + +chr1 100896594 100896608 GRHL2_MA1105.1 7.676095570757817 + +chr1 100896595 100896609 GRHL2_MA1105.1 7.292704648350947 - +chr1 101025633 101025647 GRHL2_MA1105.1 7.559388426049669 + +chr1 101128256 101128270 GRHL2_MA1105.1 9.172986780562711 - +chr1 101199163 101199177 GRHL2_MA1105.1 7.304328062418843 + +chr1 101199276 101199290 GRHL2_MA1105.1 7.961555775250106 - +chr1 101199499 101199513 GRHL2_MA1105.1 7.365502476540342 - +chr1 101371605 101371619 GRHL2_MA1105.1 7.289301413161452 - +chr1 101388805 101388819 GRHL2_MA1105.1 7.458506647373254 - +chr1 101389161 101389175 GRHL2_MA1105.1 7.586054455056656 - +chr1 101389308 101389322 GRHL2_MA1105.1 8.377103472627610 + +chr1 103515201 103515215 GRHL2_MA1105.1 8.063425192377167 + diff --git a/demo/known_tfbs_chr1_hg38/GSC2_MA0891.1.bed b/demo/known_tfbs_chr1_hg38/GSC2_MA0891.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/GSC_MA0648.1.bed b/demo/known_tfbs_chr1_hg38/GSC_MA0648.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/GSX1_MA0892.1.bed b/demo/known_tfbs_chr1_hg38/GSX1_MA0892.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/GSX2_MA0893.1.bed b/demo/known_tfbs_chr1_hg38/GSX2_MA0893.1.bed new file mode 100644 index 0000000..6b07551 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/GSX2_MA0893.1.bed @@ -0,0 +1,119 @@ +chr1 2526671 2526680 GSX2_MA0893.1 6.889821966416474 - +chr1 6861712 6861721 GSX2_MA0893.1 6.767296451048269 - +chr1 7994393 7994402 GSX2_MA0893.1 6.906167615111762 + +chr1 8097725 8097734 GSX2_MA0893.1 6.892844058688935 + +chr1 9950669 9950678 GSX2_MA0893.1 7.187813300017407 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44730659 44730668 GSX2_MA0893.1 7.342760925409030 + +chr1 46604513 46604522 GSX2_MA0893.1 6.799533872693962 + +chr1 50724703 50724712 GSX2_MA0893.1 6.846348842432636 + +chr1 50873695 50873704 GSX2_MA0893.1 7.249450739414057 + +chr1 51285476 51285485 GSX2_MA0893.1 6.892844058688935 + +chr1 57546921 57546930 GSX2_MA0893.1 7.231372226325373 + +chr1 58996920 58996929 GSX2_MA0893.1 7.110175244458313 - +chr1 62436543 62436552 GSX2_MA0893.1 6.846348842432636 - +chr1 66283841 66283850 GSX2_MA0893.1 7.214753058316122 - +chr1 66350235 66350244 GSX2_MA0893.1 6.922867783643101 - +chr1 66396963 66396972 GSX2_MA0893.1 6.767296451048269 - +chr1 66446279 66446288 GSX2_MA0893.1 6.805673738086385 + +chr1 66446279 66446288 GSX2_MA0893.1 6.805673738086385 - +chr1 66648978 66648987 GSX2_MA0893.1 6.846608072641351 - +chr1 67053812 67053821 GSX2_MA0893.1 6.846608072641351 - +chr1 67194519 67194528 GSX2_MA0893.1 7.110175244458313 - +chr1 67194545 67194554 GSX2_MA0893.1 6.788686823476391 + +chr1 70411850 70411859 GSX2_MA0893.1 6.985883567597094 + +chr1 72432989 72432998 GSX2_MA0893.1 6.826473630992675 + +chr1 74653248 74653257 GSX2_MA0893.1 6.922867783643101 - +chr1 74674576 74674585 GSX2_MA0893.1 6.889821966416473 + +chr1 74714192 74714201 GSX2_MA0893.1 7.169734786928725 - +chr1 74714672 74714681 GSX2_MA0893.1 7.249737485492711 + +chr1 74812309 74812318 GSX2_MA0893.1 7.073340634278299 + +chr1 75784661 75784670 GSX2_MA0893.1 7.645493249299619 + +chr1 75786635 75786644 GSX2_MA0893.1 6.924246128200446 - +chr1 77219832 77219841 GSX2_MA0893.1 7.004248826764433 - +chr1 77927737 77927746 GSX2_MA0893.1 6.892844058688935 - +chr1 77927741 77927750 GSX2_MA0893.1 7.342760925409030 + +chr1 77927931 77927940 GSX2_MA0893.1 6.719528153141650 - +chr1 77978426 77978435 GSX2_MA0893.1 7.137809100716256 - +chr1 78004616 78004625 GSX2_MA0893.1 6.922867783643101 - +chr1 78004714 78004723 GSX2_MA0893.1 7.956828719023200 - +chr1 78277581 78277590 GSX2_MA0893.1 6.719817920208630 - +chr1 78620095 78620104 GSX2_MA0893.1 7.004248826764433 + +chr1 79468832 79468841 GSX2_MA0893.1 6.922867783643101 - +chr1 79519611 79519620 GSX2_MA0893.1 7.109916014249598 - +chr1 80639978 80639987 GSX2_MA0893.1 6.906167615111763 - +chr1 81548479 81548488 GSX2_MA0893.1 6.770608310387709 + +chr1 82152963 82152972 GSX2_MA0893.1 6.770608310387709 + +chr1 82153282 82153291 GSX2_MA0893.1 6.863049010963974 - +chr1 84152722 84152731 GSX2_MA0893.1 7.107764165184786 - +chr1 84389320 84389329 GSX2_MA0893.1 6.846608072641351 - +chr1 84970106 84970115 GSX2_MA0893.1 6.826473630992675 - +chr1 86015762 86015771 GSX2_MA0893.1 7.539957669529731 - +chr1 86774145 86774154 GSX2_MA0893.1 7.076171661319607 + +chr1 87052490 87052499 GSX2_MA0893.1 6.805673738086385 + +chr1 87052490 87052499 GSX2_MA0893.1 6.805673738086385 - +chr1 87151749 87151758 GSX2_MA0893.1 7.030863622865231 + +chr1 87151958 87151967 GSX2_MA0893.1 6.770608310387709 + +chr1 87464067 87464076 GSX2_MA0893.1 6.767296451048269 - +chr1 87813276 87813285 GSX2_MA0893.1 7.169445019861745 + +chr1 87813678 87813687 GSX2_MA0893.1 7.294755756880109 - +chr1 89670028 89670037 GSX2_MA0893.1 7.169445019861745 - +chr1 90509932 90509941 GSX2_MA0893.1 6.905877848044783 + +chr1 91022226 91022235 GSX2_MA0893.1 6.846348842432636 + +chr1 91572187 91572196 GSX2_MA0893.1 7.956828719023200 - +chr1 92538288 92538297 GSX2_MA0893.1 6.846608072641352 + +chr1 92563907 92563916 GSX2_MA0893.1 7.342760925409030 - +chr1 92563911 92563920 GSX2_MA0893.1 6.805673738086385 + +chr1 92563911 92563920 GSX2_MA0893.1 6.805673738086385 - +chr1 92563915 92563924 GSX2_MA0893.1 6.805673738086385 + +chr1 92563915 92563924 GSX2_MA0893.1 6.805673738086385 - +chr1 92584743 92584752 GSX2_MA0893.1 6.863049010963974 + +chr1 94237127 94237136 GSX2_MA0893.1 7.401376272533217 - +chr1 97138747 97138756 GSX2_MA0893.1 7.243344680486143 - +chr1 97138789 97138798 GSX2_MA0893.1 6.937760118976942 + +chr1 97461658 97461667 GSX2_MA0893.1 7.169445019861745 + +chr1 97462107 97462116 GSX2_MA0893.1 6.719528153141650 + +chr1 101389678 101389687 GSX2_MA0893.1 6.770608310387709 - +chr1 101438176 101438185 GSX2_MA0893.1 6.844196993367824 + +chr1 101438269 101438278 GSX2_MA0893.1 6.801589801253955 - +chr1 101438488 101438497 GSX2_MA0893.1 6.922867783643100 + +chr1 101567328 101567337 GSX2_MA0893.1 6.846608072641351 - +chr1 102242112 102242121 GSX2_MA0893.1 7.004248826764433 - +chr1 102242125 102242134 GSX2_MA0893.1 6.937760118976942 + +chr1 102435220 102435229 GSX2_MA0893.1 6.864427355521320 + +chr1 103525330 103525339 GSX2_MA0893.1 6.801411571567326 - +chr1 103958733 103958742 GSX2_MA0893.1 7.231372226325373 + +chr1 103958785 103958794 GSX2_MA0893.1 6.878938089746070 - +chr1 104593233 104593242 GSX2_MA0893.1 7.034175482204671 + +chr1 104747267 104747276 GSX2_MA0893.1 7.030863622865231 - +chr1 106727209 106727218 GSX2_MA0893.1 7.342760925409030 - +chr1 106727213 106727222 GSX2_MA0893.1 7.002870482207088 - +chr1 106996506 106996515 GSX2_MA0893.1 6.764836191596026 + +chr1 107016638 107016647 GSX2_MA0893.1 7.786824672815356 - +chr1 107140350 107140359 GSX2_MA0893.1 7.523257500998394 - +chr1 107529879 107529888 GSX2_MA0893.1 7.804903185904038 + +chr1 107934726 107934735 GSX2_MA0893.1 6.878938089746070 - +chr1 107936560 107936569 GSX2_MA0893.1 6.905877848044783 - +chr1 107949698 107949707 GSX2_MA0893.1 6.739303310390126 - +chr1 107965497 107965506 GSX2_MA0893.1 7.156174359883595 - +chr1 108551423 108551432 GSX2_MA0893.1 7.267815998581394 - +chr1 108559752 108559761 GSX2_MA0893.1 6.967805054508411 - +chr1 109816338 109816347 GSX2_MA0893.1 6.801411571567326 - +chr1 113031391 113031400 GSX2_MA0893.1 7.004248826764433 + +chr1 113191985 113191994 GSX2_MA0893.1 6.801411571567325 + diff --git a/demo/known_tfbs_chr1_hg38/Gabpa_MA0062.2.bed b/demo/known_tfbs_chr1_hg38/Gabpa_MA0062.2.bed new file mode 100644 index 0000000..ad5ff8c --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/Gabpa_MA0062.2.bed @@ -0,0 +1,700 @@ +chr1 827331 827341 Gabpa_MA0062.2 8.562467039178211 - +chr1 827509 827519 Gabpa_MA0062.2 8.408438568768240 - +chr1 1019767 1019777 Gabpa_MA0062.2 11.020748737381517 - +chr1 1059555 1059565 Gabpa_MA0062.2 7.349064845404379 - +chr1 1158067 1158077 Gabpa_MA0062.2 8.153621219447253 + +chr1 1232054 1232064 Gabpa_MA0062.2 8.937656146923638 + +chr1 1273864 1273874 Gabpa_MA0062.2 9.262253518507185 - +chr1 1308122 1308132 Gabpa_MA0062.2 11.028353336043859 + +chr1 1324681 1324691 Gabpa_MA0062.2 10.110863372065118 - +chr1 1324700 1324710 Gabpa_MA0062.2 7.909112190077863 + +chr1 1324880 1324890 Gabpa_MA0062.2 10.466496028490509 + +chr1 1375194 1375204 Gabpa_MA0062.2 11.486838425726988 - +chr1 1375464 1375474 Gabpa_MA0062.2 7.675554762361624 - +chr1 1375506 1375516 Gabpa_MA0062.2 7.842695655731184 + +chr1 1375528 1375538 Gabpa_MA0062.2 8.316389942738997 + +chr1 1375549 1375559 Gabpa_MA0062.2 8.342022034421561 + +chr1 1375572 1375582 Gabpa_MA0062.2 7.508450089490608 + +chr1 1407304 1407314 Gabpa_MA0062.2 9.885069835524009 - +chr1 1407327 1407337 Gabpa_MA0062.2 8.447009912774847 - +chr1 1574610 1574620 Gabpa_MA0062.2 9.184973880356969 - +chr1 1574646 1574656 Gabpa_MA0062.2 10.586165843193310 + +chr1 1615412 1615422 Gabpa_MA0062.2 11.020748737381517 - +chr1 1658787 1658797 Gabpa_MA0062.2 8.726488790673839 + +chr1 1658999 1659009 Gabpa_MA0062.2 8.925108024775033 - +chr1 1659086 1659096 Gabpa_MA0062.2 8.917503426112692 - +chr1 1659270 1659280 Gabpa_MA0062.2 9.105889464666109 - +chr1 1692649 1692659 Gabpa_MA0062.2 9.277323352564602 + +chr1 1693370 1693380 Gabpa_MA0062.2 10.539424737126620 + +chr1 1724131 1724141 Gabpa_MA0062.2 8.726488790673839 + +chr1 1724325 1724335 Gabpa_MA0062.2 8.459018336429562 - +chr1 1724409 1724419 Gabpa_MA0062.2 8.917503426112692 - +chr1 1724581 1724591 Gabpa_MA0062.2 9.105889464666109 - +chr1 1745924 1745934 Gabpa_MA0062.2 9.277323352564602 + +chr1 1908940 1908950 Gabpa_MA0062.2 8.223465719114888 + +chr1 2194765 2194775 Gabpa_MA0062.2 9.621005666152769 + +chr1 2195101 2195111 Gabpa_MA0062.2 8.369046171368584 - +chr1 2205507 2205517 Gabpa_MA0062.2 10.126231861902589 - +chr1 2227632 2227642 Gabpa_MA0062.2 8.482920531924487 + +chr1 2227648 2227658 Gabpa_MA0062.2 8.636402704343611 + +chr1 2300613 2300623 Gabpa_MA0062.2 7.517760354883944 - +chr1 2301176 2301186 Gabpa_MA0062.2 9.102492392689083 + +chr1 2391708 2391718 Gabpa_MA0062.2 7.657248889013563 - +chr1 2391755 2391765 Gabpa_MA0062.2 10.625558240592966 + +chr1 2391761 2391771 Gabpa_MA0062.2 7.615053350577842 + +chr1 2391837 2391847 Gabpa_MA0062.2 9.372239041111847 + +chr1 2412666 2412676 Gabpa_MA0062.2 9.178818173302218 + +chr1 2413068 2413078 Gabpa_MA0062.2 8.652094371014989 - +chr1 2548858 2548868 Gabpa_MA0062.2 8.599214377308700 + +chr1 2548927 2548937 Gabpa_MA0062.2 7.891962662584648 + +chr1 2578400 2578410 Gabpa_MA0062.2 7.891962662584644 - +chr1 2578469 2578479 Gabpa_MA0062.2 8.599214377308696 - +chr1 2643244 2643254 Gabpa_MA0062.2 8.016830843579015 + +chr1 2643271 2643281 Gabpa_MA0062.2 8.811233664219133 - +chr1 3624790 3624800 Gabpa_MA0062.2 8.459018336429562 + +chr1 3624814 3624824 Gabpa_MA0062.2 10.599926148910402 - +chr1 3656744 3656754 Gabpa_MA0062.2 8.642558411398362 + +chr1 3747380 3747390 Gabpa_MA0062.2 10.126231861902589 + +chr1 3772446 3772456 Gabpa_MA0062.2 9.102492392689083 - +chr1 3796512 3796522 Gabpa_MA0062.2 9.229016828162280 - +chr1 3857080 3857090 Gabpa_MA0062.2 7.695144722797992 - +chr1 3900413 3900423 Gabpa_MA0062.2 7.431071340530742 + +chr1 6026782 6026792 Gabpa_MA0062.2 7.214927218234971 + +chr1 6206029 6206039 Gabpa_MA0062.2 9.516925941533033 + +chr1 6394029 6394039 Gabpa_MA0062.2 7.402576465987714 - +chr1 6490882 6490892 Gabpa_MA0062.2 8.636402704343611 + +chr1 6554623 6554633 Gabpa_MA0062.2 8.802319537216464 + +chr1 6602632 6602642 Gabpa_MA0062.2 8.710030326695367 + +chr1 7771217 7771227 Gabpa_MA0062.2 11.480682718672238 - +chr1 7771590 7771600 Gabpa_MA0062.2 7.695144722797993 + +chr1 7954291 7954301 Gabpa_MA0062.2 11.520075116071894 + +chr1 7961926 7961936 Gabpa_MA0062.2 10.133836460564931 - +chr1 7994211 7994221 Gabpa_MA0062.2 8.349740245518261 - +chr1 8878703 8878713 Gabpa_MA0062.2 7.431071340530742 - +chr1 9234651 9234661 Gabpa_MA0062.2 8.756412515295469 + +chr1 9234953 9234963 Gabpa_MA0062.2 7.682880980696127 + +chr1 9588648 9588658 Gabpa_MA0062.2 9.192578479019311 - +chr1 9687398 9687408 Gabpa_MA0062.2 10.014166645862129 - +chr1 9943383 9943393 Gabpa_MA0062.2 9.372239041111845 - +chr1 9943402 9943412 Gabpa_MA0062.2 11.020748737381517 - +chr1 10210934 10210944 Gabpa_MA0062.2 9.644907861647690 - +chr1 10472529 10472539 Gabpa_MA0062.2 7.229055034452521 - +chr1 11099665 11099675 Gabpa_MA0062.2 9.145281862065765 - +chr1 11479261 11479271 Gabpa_MA0062.2 9.059148358599417 - +chr1 11681428 11681438 Gabpa_MA0062.2 9.050836253187562 + +chr1 11736271 11736281 Gabpa_MA0062.2 7.504000049166851 + +chr1 11806037 11806047 Gabpa_MA0062.2 9.112045171720860 + +chr1 12019301 12019311 Gabpa_MA0062.2 8.176468723052890 - +chr1 13731062 13731072 Gabpa_MA0062.2 9.299310332475736 - +chr1 14599488 14599498 Gabpa_MA0062.2 8.650163010060703 - +chr1 14924095 14924105 Gabpa_MA0062.2 7.739187670603302 + +chr1 15524236 15524246 Gabpa_MA0062.2 10.625558240592966 - +chr1 15616976 15616986 Gabpa_MA0062.2 8.498410733829218 + +chr1 15617753 15617763 Gabpa_MA0062.2 7.996263987449975 - +chr1 15976117 15976127 Gabpa_MA0062.2 10.110863372065118 - +chr1 16207059 16207069 Gabpa_MA0062.2 7.739187670603302 + +chr1 16237137 16237147 Gabpa_MA0062.2 10.073335048781146 - +chr1 16367128 16367138 Gabpa_MA0062.2 9.516925941533033 - +chr1 16440732 16440742 Gabpa_MA0062.2 9.184839702428926 + +chr1 16499052 16499062 Gabpa_MA0062.2 8.692952479437386 - +chr1 16644519 16644529 Gabpa_MA0062.2 7.342909138349627 - +chr1 16905183 16905193 Gabpa_MA0062.2 7.816884429937493 + +chr1 17011604 17011614 Gabpa_MA0062.2 8.016830843579015 - +chr1 17054150 17054160 Gabpa_MA0062.2 9.571979153011581 - +chr1 17438406 17438416 Gabpa_MA0062.2 7.556896862288294 - +chr1 17438608 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Gata1_MA0035.3 7.504168548728456 + +chr1 26378613 26378623 Gata1_MA0035.3 10.015431092090722 + +chr1 26620776 26620786 Gata1_MA0035.3 10.721400890073495 - +chr1 27234662 27234672 Gata1_MA0035.3 8.290334801421741 - +chr1 27659583 27659593 Gata1_MA0035.3 9.972039042130204 - +chr1 28172832 28172842 Gata1_MA0035.3 9.455026029011590 + +chr1 28172863 28172873 Gata1_MA0035.3 8.284778923007028 + +chr1 29182303 29182313 Gata1_MA0035.3 8.132765720528884 + +chr1 31549146 31549156 Gata1_MA0035.3 10.974500243136079 + +chr1 33127555 33127565 Gata1_MA0035.3 9.968409858517571 + +chr1 36224563 36224573 Gata1_MA0035.3 10.110961364260447 + +chr1 37288947 37288957 Gata1_MA0035.3 8.253530396671746 + +chr1 39576711 39576721 Gata1_MA0035.3 9.127240218078047 + +chr1 39598830 39598840 Gata1_MA0035.3 7.387479679217281 - +chr1 40531855 40531865 Gata1_MA0035.3 7.233729442242748 - +chr1 41623319 41623329 Gata1_MA0035.3 7.355389777768663 - +chr1 44030753 44030763 Gata1_MA0035.3 7.717777328729658 - +chr1 44819420 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197042124 Gfi1b_MA0483.1 8.430378577514823 + +chr1 197182539 197182549 Gfi1b_MA0483.1 9.233620745447048 - +chr1 197201982 197201992 Gfi1b_MA0483.1 8.307784529513452 - +chr1 197400281 197400291 Gfi1b_MA0483.1 8.383070693518928 - +chr1 198158753 198158763 Gfi1b_MA0483.1 11.704392643384276 + +chr1 198202523 198202533 Gfi1b_MA0483.1 8.523677653774323 + +chr1 198550131 198550141 Gfi1b_MA0483.1 8.461390372405100 - +chr1 198919871 198919881 Gfi1b_MA0483.1 7.179867550542975 + +chr1 199081836 199081846 Gfi1b_MA0483.1 7.503343525759652 - +chr1 199172852 199172862 Gfi1b_MA0483.1 8.309277054021177 + +chr1 199400653 199400663 Gfi1b_MA0483.1 7.735915379130789 - +chr1 199498837 199498847 Gfi1b_MA0483.1 9.676242723481465 - +chr1 199941891 199941901 Gfi1b_MA0483.1 8.430378577514823 - +chr1 200154002 200154012 Gfi1b_MA0483.1 7.467724407074252 - +chr1 200415826 200415836 Gfi1b_MA0483.1 8.523677653774323 - +chr1 200628620 200628630 Gfi1b_MA0483.1 7.316167352956951 - +chr1 200739194 200739204 Gfi1b_MA0483.1 9.794661457810815 - +chr1 200869996 200870006 Gfi1b_MA0483.1 8.108866743025180 - +chr1 201171045 201171055 Gfi1b_MA0483.1 7.626051164429294 - +chr1 202488316 202488326 Gfi1b_MA0483.1 8.430378577514823 + +chr1 202488331 202488341 Gfi1b_MA0483.1 7.950597596232161 + +chr1 202616233 202616243 Gfi1b_MA0483.1 7.894466143272033 + +chr1 202958393 202958403 Gfi1b_MA0483.1 7.744546236335636 + +chr1 203289842 203289852 Gfi1b_MA0483.1 9.126166273726625 + +chr1 203327878 203327888 Gfi1b_MA0483.1 7.929430886237149 - +chr1 203381240 203381250 Gfi1b_MA0483.1 7.559059342606718 + +chr1 203650022 203650032 Gfi1b_MA0483.1 7.770706962394866 - +chr1 205288480 205288490 Gfi1b_MA0483.1 10.286788900655177 - +chr1 205321749 205321759 Gfi1b_MA0483.1 8.175140126303356 + +chr1 205680148 205680158 Gfi1b_MA0483.1 7.695359145020694 + +chr1 206053429 206053439 Gfi1b_MA0483.1 9.044490646490413 - +chr1 206563494 206563504 Gfi1b_MA0483.1 7.212075993012171 - +chr1 206685963 206685973 Gfi1b_MA0483.1 7.997865923017974 - +chr1 206717519 206717529 Gfi1b_MA0483.1 9.636392311017797 - +chr1 206967741 206967751 Gfi1b_MA0483.1 8.932878093937390 + +chr1 207414825 207414835 Gfi1b_MA0483.1 7.421485897232021 + +chr1 207454980 207454990 Gfi1b_MA0483.1 7.714575509434738 - +chr1 209086839 209086849 Gfi1b_MA0483.1 10.761962558142717 + +chr1 209673346 209673356 Gfi1b_MA0483.1 9.222888755819984 + +chr1 210361214 210361224 Gfi1b_MA0483.1 7.501379385032618 - +chr1 210684932 210684942 Gfi1b_MA0483.1 10.186199711436258 + +chr1 211327362 211327372 Gfi1b_MA0483.1 8.072720635656841 + +chr1 211675342 211675352 Gfi1b_MA0483.1 7.218355186105557 + +chr1 211939164 211939174 Gfi1b_MA0483.1 8.564709665207751 + +chr1 211939504 211939514 Gfi1b_MA0483.1 10.282181576860054 - +chr1 212596324 212596334 Gfi1b_MA0483.1 9.847982320243922 - +chr1 212834112 212834122 Gfi1b_MA0483.1 8.844353748931944 + +chr1 212857797 212857807 Gfi1b_MA0483.1 9.133031556228129 + +chr1 212950459 212950469 Gfi1b_MA0483.1 8.183736188485065 + 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2.069805245133523 + +chr1 45491311 45491322 HES5_MA0821.1 1.432213929682930 + +chr1 45491311 45491322 HES5_MA0821.1 2.624057500047625 - +chr1 52843060 52843071 HES5_MA0821.1 2.714832500252878 - +chr1 53326793 53326804 HES5_MA0821.1 1.138577334566519 + +chr1 55288061 55288072 HES5_MA0821.1 3.512481229394436 + +chr1 55288061 55288072 HES5_MA0821.1 7.450292546966618 - +chr1 61077049 61077060 HES5_MA0821.1 2.240200935154589 + +chr1 61077049 61077060 HES5_MA0821.1 0.923301284617327 - +chr1 62122230 62122241 HES5_MA0821.1 5.850323093118321 + +chr1 62122230 62122241 HES5_MA0821.1 5.792809194378146 - +chr1 62688323 62688334 HES5_MA0821.1 2.969254514488485 + +chr1 62688323 62688334 HES5_MA0821.1 6.292305802919397 - +chr1 66930155 66930166 HES5_MA0821.1 0.921573500635410 + +chr1 66930155 66930166 HES5_MA0821.1 1.941328796630522 - +chr1 68181422 68181433 HES5_MA0821.1 1.788963468337338 - +chr1 74733678 74733689 HES5_MA0821.1 1.026345519944309 + +chr1 75745355 75745366 HES5_MA0821.1 5.249549306482339 + +chr1 75745355 75745366 HES5_MA0821.1 3.818728885948389 - +chr1 75797294 75797305 HES5_MA0821.1 2.954555611131980 - +chr1 76871672 76871683 HES5_MA0821.1 2.536427983627027 - +chr1 77683235 77683246 HES5_MA0821.1 4.485821645679311 + +chr1 77978666 77978677 HES5_MA0821.1 3.056031445829734 + +chr1 77978666 77978677 HES5_MA0821.1 1.659211106780115 - +chr1 79469289 79469300 HES5_MA0821.1 5.987186912627044 + +chr1 79469289 79469300 HES5_MA0821.1 4.933431535147601 - +chr1 79472231 79472242 HES5_MA0821.1 2.576836749468427 + diff --git a/demo/known_tfbs_chr1_hg38/HES7_MA0822.1.bed b/demo/known_tfbs_chr1_hg38/HES7_MA0822.1.bed new file mode 100644 index 0000000..ad4b608 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/HES7_MA0822.1.bed @@ -0,0 +1,121 @@ +chr1 778986 778997 HES7_MA0822.1 4.116532925806754 + +chr1 827184 827195 HES7_MA0822.1 2.777763976372491 + +chr1 1232107 1232118 HES7_MA0822.1 2.160061282913095 + +chr1 1399386 1399397 HES7_MA0822.1 2.576396821589274 + +chr1 1399386 1399397 HES7_MA0822.1 2.906156217151185 - +chr1 1574395 1574406 HES7_MA0822.1 2.129304196376346 - +chr1 1615246 1615257 HES7_MA0822.1 7.114535077976752 - +chr1 1658979 1658990 HES7_MA0822.1 2.888215551941627 + +chr1 1658979 1658990 HES7_MA0822.1 2.722863762082653 - +chr1 2205470 2205481 HES7_MA0822.1 2.634482019137148 + +chr1 2205470 2205481 HES7_MA0822.1 2.634482019137148 - +chr1 2585764 2585775 HES7_MA0822.1 3.101845677413126 + +chr1 2750413 2750424 HES7_MA0822.1 2.027170782533935 + +chr1 3772285 3772296 HES7_MA0822.1 2.360163239781949 - +chr1 3796593 3796604 HES7_MA0822.1 4.754710607483297 + +chr1 3796593 3796604 HES7_MA0822.1 2.978501727719852 - +chr1 6026312 6026323 HES7_MA0822.1 2.978501727719852 + +chr1 6026312 6026323 HES7_MA0822.1 4.945765615413329 - +chr1 6603128 6603139 HES7_MA0822.1 4.458648201556738 - +chr1 6613744 6613755 HES7_MA0822.1 4.209258760527557 + +chr1 6702046 6702057 HES7_MA0822.1 2.436154462897833 + +chr1 6702046 6702057 HES7_MA0822.1 5.141334640666935 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b/demo/known_tfbs_chr1_hg38/HEY1_MA0823.1.bed new file mode 100644 index 0000000..a7ed657 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/HEY1_MA0823.1.bed @@ -0,0 +1,120 @@ +chr1 1232108 1232117 HEY1_MA0823.1 8.657584578844354 + +chr1 1505197 1505206 HEY1_MA0823.1 7.803364999841988 - +chr1 1505206 1505215 HEY1_MA0823.1 7.824176499852252 + +chr1 1505206 1505215 HEY1_MA0823.1 9.396177175766784 - +chr1 1778505 1778514 HEY1_MA0823.1 7.707602049575007 - +chr1 2548890 2548899 HEY1_MA0823.1 7.935393753296373 - +chr1 2555743 2555752 HEY1_MA0823.1 7.803364999841988 - +chr1 2653458 2653467 HEY1_MA0823.1 7.635445204573992 + +chr1 2750414 2750423 HEY1_MA0823.1 8.406447348666367 + +chr1 3677206 3677215 HEY1_MA0823.1 7.732404545865030 + +chr1 3677206 3677215 HEY1_MA0823.1 7.732404545865030 - +chr1 6199514 6199523 HEY1_MA0823.1 9.469427255471018 + +chr1 6199514 6199523 HEY1_MA0823.1 7.630870475227105 - +chr1 6602321 6602330 HEY1_MA0823.1 7.935393753296377 + +chr1 6702040 6702049 HEY1_MA0823.1 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12078685 HEY1_MA0823.1 9.005376952130336 - +chr1 15603647 15603656 HEY1_MA0823.1 8.587717359570616 + +chr1 15603647 15603656 HEY1_MA0823.1 9.542150595498079 - +chr1 15975733 15975742 HEY1_MA0823.1 9.110480358246679 + +chr1 16440592 16440601 HEY1_MA0823.1 9.609856733840978 + +chr1 16440592 16440601 HEY1_MA0823.1 9.528205929221169 - +chr1 18902945 18902954 HEY1_MA0823.1 9.140887200228386 + +chr1 18902945 18902954 HEY1_MA0823.1 8.804019365253621 - +chr1 20661375 20661384 HEY1_MA0823.1 7.997720629988290 + +chr1 22451802 22451811 HEY1_MA0823.1 7.851747210256997 + +chr1 23019468 23019477 HEY1_MA0823.1 8.120750531146262 - +chr1 23555037 23555046 HEY1_MA0823.1 7.935393753296373 - +chr1 23980486 23980495 HEY1_MA0823.1 8.120750531146262 + +chr1 24848441 24848450 HEY1_MA0823.1 7.707602049575007 - +chr1 25906462 25906471 HEY1_MA0823.1 9.260666927668733 + +chr1 25906462 25906471 HEY1_MA0823.1 8.537966600484658 - +chr1 25906506 25906515 HEY1_MA0823.1 10.926729183297763 + +chr1 25906506 25906515 HEY1_MA0823.1 10.926729183297764 - +chr1 26169926 26169935 HEY1_MA0823.1 7.732404545865030 + +chr1 26169926 26169935 HEY1_MA0823.1 7.732404545865030 - +chr1 26432115 26432124 HEY1_MA0823.1 7.983775963711384 + +chr1 26432115 26432124 HEY1_MA0823.1 8.402294603305958 - +chr1 26472398 26472407 HEY1_MA0823.1 7.803364999841988 + +chr1 26500978 26500987 HEY1_MA0823.1 10.072509604295396 + +chr1 26500978 26500987 HEY1_MA0823.1 9.164903977401751 - +chr1 26889975 26889984 HEY1_MA0823.1 8.371887761324249 + +chr1 27726316 27726325 HEY1_MA0823.1 9.164903977401750 + +chr1 27726316 27726325 HEY1_MA0823.1 10.072509604295400 - +chr1 28643181 28643190 HEY1_MA0823.1 7.606853698053742 + +chr1 28643181 28643190 HEY1_MA0823.1 8.200937016429243 - +chr1 31788410 31788419 HEY1_MA0823.1 9.542150595498077 + +chr1 31788410 31788419 HEY1_MA0823.1 8.587717359570616 - +chr1 32013618 32013627 HEY1_MA0823.1 8.427097099595981 + +chr1 32013618 32013627 HEY1_MA0823.1 8.939529613351672 - +chr1 32179962 32179971 HEY1_MA0823.1 7.707602049575007 - +chr1 33430956 33430965 HEY1_MA0823.1 8.120750531146262 + +chr1 33431140 33431149 HEY1_MA0823.1 8.657584578844354 - +chr1 34859933 34859942 HEY1_MA0823.1 7.688504502673551 + +chr1 34859933 34859942 HEY1_MA0823.1 8.119286211809435 - +chr1 35641772 35641781 HEY1_MA0823.1 8.286667621226021 - +chr1 36224245 36224254 HEY1_MA0823.1 7.803364999841988 + +chr1 37554361 37554370 HEY1_MA0823.1 7.987257458355049 + +chr1 38012478 38012487 HEY1_MA0823.1 7.688504502673551 + +chr1 38012478 38012487 HEY1_MA0823.1 8.119286211809435 - +chr1 38047076 38047085 HEY1_MA0823.1 7.935393753296373 - +chr1 38859877 38859886 HEY1_MA0823.1 8.537966600484657 + +chr1 38859877 38859886 HEY1_MA0823.1 9.260666927668733 - +chr1 39509383 39509392 HEY1_MA0823.1 7.732404545865030 + +chr1 39509383 39509392 HEY1_MA0823.1 7.732404545865030 - +chr1 39576465 39576474 HEY1_MA0823.1 7.606853698053742 + +chr1 39576465 39576474 HEY1_MA0823.1 8.200937016429243 - +chr1 39799370 39799379 HEY1_MA0823.1 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7.803364999841988 - +chr1 75797295 75797304 HEY1_MA0823.1 7.630870475227107 + +chr1 75797295 75797304 HEY1_MA0823.1 9.469427255471022 - diff --git a/demo/known_tfbs_chr1_hg38/HEY2_MA0649.1.bed b/demo/known_tfbs_chr1_hg38/HEY2_MA0649.1.bed new file mode 100644 index 0000000..2378df5 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/HEY2_MA0649.1.bed @@ -0,0 +1,120 @@ +chr1 778987 778996 HEY2_MA0649.1 7.367485111519425 + +chr1 1232108 1232117 HEY2_MA0649.1 7.158229059039316 + +chr1 1232108 1232117 HEY2_MA0649.1 7.791200490722048 - +chr1 1399387 1399396 HEY2_MA0649.1 7.252532897560174 + +chr1 1471718 1471727 HEY2_MA0649.1 7.430588276727853 - +chr1 1505206 1505215 HEY2_MA0649.1 9.565654060201068 + +chr1 1505206 1505215 HEY2_MA0649.1 7.916439795726713 - +chr1 1512102 1512111 HEY2_MA0649.1 7.430588276727853 - +chr1 2412782 2412791 HEY2_MA0649.1 7.382191737492866 + +chr1 2548890 2548899 HEY2_MA0649.1 7.278537973260071 + +chr1 2577986 2577995 HEY2_MA0649.1 7.367485111519425 + +chr1 2586913 2586922 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9539446 HEY2_MA0649.1 7.791200490722048 - +chr1 10399411 10399420 HEY2_MA0649.1 8.320134886874280 + +chr1 10399411 10399420 HEY2_MA0649.1 7.874744440304394 - +chr1 10694095 10694104 HEY2_MA0649.1 7.449684577550606 - +chr1 10985400 10985409 HEY2_MA0649.1 7.696986178796584 + +chr1 11013102 11013111 HEY2_MA0649.1 7.382191737492866 + +chr1 11060210 11060219 HEY2_MA0649.1 7.278537973260071 + +chr1 11099884 11099893 HEY2_MA0649.1 7.498081116785594 + +chr1 11806169 11806178 HEY2_MA0649.1 7.158229059039316 + +chr1 11806169 11806178 HEY2_MA0649.1 7.791200490722048 - +chr1 12078676 12078685 HEY2_MA0649.1 8.091647687890939 + +chr1 12078676 12078685 HEY2_MA0649.1 9.723089514730573 - +chr1 13700610 13700619 HEY2_MA0649.1 7.498081116785594 + +chr1 15603647 15603656 HEY2_MA0649.1 7.704438316873022 + +chr1 15603647 15603656 HEY2_MA0649.1 9.849285763988666 - +chr1 15975733 15975742 HEY2_MA0649.1 8.252642046816540 + +chr1 15975733 15975742 HEY2_MA0649.1 7.942237280362132 - +chr1 16440592 16440601 HEY2_MA0649.1 9.875045312827776 + +chr1 16440592 16440601 HEY2_MA0649.1 8.858802480036154 - +chr1 18902945 18902954 HEY2_MA0649.1 9.771486053965560 + +chr1 18902945 18902954 HEY2_MA0649.1 7.762146620613779 - +chr1 22451802 22451811 HEY2_MA0649.1 8.703884064651454 - +chr1 23019468 23019477 HEY2_MA0649.1 7.449684577550606 + +chr1 23540010 23540019 HEY2_MA0649.1 7.696986178796584 + +chr1 23555037 23555046 HEY2_MA0649.1 7.278537973260071 + +chr1 23980486 23980495 HEY2_MA0649.1 7.449684577550606 - +chr1 24642999 24643008 HEY2_MA0649.1 7.185040057502434 + +chr1 25247235 25247244 HEY2_MA0649.1 7.893368807011536 - +chr1 25906462 25906471 HEY2_MA0649.1 7.868043256491726 + +chr1 25906462 25906471 HEY2_MA0649.1 9.895155127478228 - +chr1 25906506 25906515 HEY2_MA0649.1 10.914360577557346 + +chr1 25906506 25906515 HEY2_MA0649.1 10.914360577557346 - +chr1 26432115 26432124 HEY2_MA0649.1 9.013275317278163 - +chr1 26500978 26500987 HEY2_MA0649.1 8.013938722444012 + +chr1 26500978 26500987 HEY2_MA0649.1 10.092306807468661 - +chr1 26889975 26889984 HEY2_MA0649.1 7.494431310129142 + +chr1 27726316 27726325 HEY2_MA0649.1 10.092306807468661 + +chr1 27726316 27726325 HEY2_MA0649.1 8.013938722444012 - +chr1 27773148 27773157 HEY2_MA0649.1 7.498081116785594 + +chr1 28582016 28582025 HEY2_MA0649.1 7.430588276727853 - +chr1 28643181 28643190 HEY2_MA0649.1 7.667531417209379 + +chr1 31788410 31788419 HEY2_MA0649.1 9.849285763988666 + +chr1 31788410 31788419 HEY2_MA0649.1 7.704438316873022 - +chr1 31937882 31937891 HEY2_MA0649.1 7.503910381439667 + +chr1 32013618 32013627 HEY2_MA0649.1 9.441984986688400 + +chr1 32013618 32013627 HEY2_MA0649.1 7.810543159848765 - +chr1 32817311 32817320 HEY2_MA0649.1 7.561924150186883 + +chr1 33430956 33430965 HEY2_MA0649.1 7.449684577550606 - +chr1 33431140 33431149 HEY2_MA0649.1 7.791200490722048 + +chr1 33431140 33431149 HEY2_MA0649.1 7.158229059039316 - +chr1 34859933 34859942 HEY2_MA0649.1 8.683774250001003 + +chr1 37514846 37514855 HEY2_MA0649.1 7.206663534070612 + +chr1 37554361 37554370 HEY2_MA0649.1 8.374382997374294 - +chr1 37692578 37692587 HEY2_MA0649.1 7.473408840654367 + +chr1 38012478 38012487 HEY2_MA0649.1 8.683774250001003 + +chr1 38047076 38047085 HEY2_MA0649.1 7.278537973260071 + +chr1 38859877 38859886 HEY2_MA0649.1 9.895155127478228 + +chr1 38859877 38859886 HEY2_MA0649.1 7.868043256491726 - +chr1 39491278 39491287 HEY2_MA0649.1 7.232423082909724 + +chr1 39576465 39576474 HEY2_MA0649.1 7.667531417209379 + +chr1 39598498 39598507 HEY2_MA0649.1 7.696986178796584 + +chr1 39799370 39799379 HEY2_MA0649.1 8.703884064651454 + +chr1 39817451 39817460 HEY2_MA0649.1 8.703884064651454 - +chr1 40161357 40161366 HEY2_MA0649.1 7.791200490722048 + +chr1 40161357 40161366 HEY2_MA0649.1 7.158229059039316 - +chr1 41487366 41487375 HEY2_MA0649.1 7.696986178796584 + +chr1 42036125 42036134 HEY2_MA0649.1 7.449684577550606 + +chr1 43172241 43172250 HEY2_MA0649.1 7.324125186697772 + +chr1 43172241 43172250 HEY2_MA0649.1 7.696934587997498 - +chr1 43367880 43367889 HEY2_MA0649.1 7.696934587997498 + +chr1 43367880 43367889 HEY2_MA0649.1 7.324125186697772 - +chr1 43974626 43974635 HEY2_MA0649.1 7.382191737492866 + +chr1 43991514 43991523 HEY2_MA0649.1 8.204245507581552 + +chr1 43991514 43991523 HEY2_MA0649.1 8.271738347639292 - +chr1 44030269 44030278 HEY2_MA0649.1 9.052991542739091 + +chr1 44775860 44775869 HEY2_MA0649.1 7.260282153296483 - +chr1 45206419 45206428 HEY2_MA0649.1 7.494431310129142 + +chr1 45327186 45327195 HEY2_MA0649.1 7.324125186697772 + +chr1 45327186 45327195 HEY2_MA0649.1 7.696934587997498 - +chr1 45550815 45550824 HEY2_MA0649.1 7.278537973260071 - +chr1 45803521 45803530 HEY2_MA0649.1 7.449684577550606 + +chr1 51729514 51729523 HEY2_MA0649.1 7.232423082909724 + +chr1 52366190 52366199 HEY2_MA0649.1 8.374382997374294 - +chr1 52403811 52403820 HEY2_MA0649.1 7.503910381439665 - +chr1 52698173 52698182 HEY2_MA0649.1 7.833411448716825 - +chr1 53326794 53326803 HEY2_MA0649.1 9.382492610016252 + +chr1 53327458 53327467 HEY2_MA0649.1 7.430588276727853 - +chr1 53838458 53838467 HEY2_MA0649.1 7.503910381439665 - +chr1 55288062 55288071 HEY2_MA0649.1 10.092306807468661 + +chr1 55288062 55288071 HEY2_MA0649.1 8.013938722444012 - +chr1 61077050 61077059 HEY2_MA0649.1 7.494431310129142 + diff --git a/demo/known_tfbs_chr1_hg38/HIC2_MA0738.1.bed b/demo/known_tfbs_chr1_hg38/HIC2_MA0738.1.bed new file mode 100644 index 0000000..602b08b --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/HIC2_MA0738.1.bed @@ -0,0 +1,120 @@ +chr1 1399634 1399642 HIC2_MA0738.1 7.973753898226883 + +chr1 1407367 1407375 HIC2_MA0738.1 7.600450684808570 + +chr1 1919658 1919666 HIC2_MA0738.1 7.472085525734984 + +chr1 2578378 2578386 HIC2_MA0738.1 8.176426950968127 + +chr1 2586193 2586201 HIC2_MA0738.1 7.314739732134363 + +chr1 2653245 2653253 HIC2_MA0738.1 7.397777632067327 + +chr1 2653800 2653808 HIC2_MA0738.1 7.566364318525710 + +chr1 2654000 2654008 HIC2_MA0738.1 7.566364318525710 + +chr1 2654040 2654048 HIC2_MA0738.1 7.566364318525710 + +chr1 2656173 2656181 HIC2_MA0738.1 7.397777632067327 + +chr1 2750249 2750257 HIC2_MA0738.1 8.521570496503088 - +chr1 2750322 2750330 HIC2_MA0738.1 7.397777632067327 + +chr1 3677336 3677344 HIC2_MA0738.1 7.566364318525710 - +chr1 3857718 3857726 HIC2_MA0738.1 7.517412784875606 + +chr1 4267661 4267669 HIC2_MA0738.1 7.731901137817383 - +chr1 6026587 6026595 HIC2_MA0738.1 7.862556330410568 + +chr1 6235646 6235654 HIC2_MA0738.1 7.842303445218072 + +chr1 6784662 6784670 HIC2_MA0738.1 7.731105877401754 - +chr1 8397769 8397777 HIC2_MA0738.1 7.600450684808570 - +chr1 8879018 8879026 HIC2_MA0738.1 7.862556330410568 - +chr1 9687678 9687686 HIC2_MA0738.1 8.390120043494276 + +chr1 9950808 9950816 HIC2_MA0738.1 7.566364318525710 - +chr1 10398913 10398921 HIC2_MA0738.1 7.731105877401754 - +chr1 11099636 11099644 HIC2_MA0738.1 7.862556330410568 - +chr1 11680912 11680920 HIC2_MA0738.1 7.397777632067327 + +chr1 11806063 11806071 HIC2_MA0738.1 7.566364318525710 + +chr1 15409681 15409689 HIC2_MA0738.1 8.176426950968127 - +chr1 16236744 16236752 HIC2_MA0738.1 7.814143777334719 - +chr1 17141560 17141568 HIC2_MA0738.1 7.731901137817382 + +chr1 17438506 17438514 HIC2_MA0738.1 7.397777632067328 - +chr1 18955964 18955972 HIC2_MA0738.1 7.731105877401756 + +chr1 19477098 19477106 HIC2_MA0738.1 7.697814771534522 - +chr1 19597280 19597288 HIC2_MA0738.1 7.731105877401754 - +chr1 20696782 20696790 HIC2_MA0738.1 8.307877403976939 + +chr1 20696951 20696959 HIC2_MA0738.1 7.517412784875606 + +chr1 21294567 21294575 HIC2_MA0738.1 7.814143777334719 + +chr1 21294680 21294688 HIC2_MA0738.1 7.397777632067328 - +chr1 21334495 21334503 HIC2_MA0738.1 7.945594230343533 - +chr1 23368451 23368459 HIC2_MA0738.1 7.862556330410568 + +chr1 23868074 23868082 HIC2_MA0738.1 7.731105877401754 - +chr1 25232872 25232880 HIC2_MA0738.1 7.397777632067328 - +chr1 25247897 25247905 HIC2_MA0738.1 7.566364318525710 + +chr1 25338541 25338549 HIC2_MA0738.1 7.566364318525710 + +chr1 25549828 25549836 HIC2_MA0738.1 7.697814771534522 - +chr1 25905843 25905851 HIC2_MA0738.1 7.472085525734984 + +chr1 26111006 26111014 HIC2_MA0738.1 7.842303445218072 - +chr1 26169761 26169769 HIC2_MA0738.1 8.176426950968127 - +chr1 26865843 26865851 HIC2_MA0738.1 7.731105877401754 - +chr1 26890011 26890019 HIC2_MA0738.1 7.397777632067327 + +chr1 27365981 27365989 HIC2_MA0738.1 7.814143777334719 - +chr1 27725925 27725933 HIC2_MA0738.1 7.731105877401756 + +chr1 27960120 27960128 HIC2_MA0738.1 7.814143777334719 - +chr1 28552690 28552698 HIC2_MA0738.1 7.814143777334719 + +chr1 28648345 28648353 HIC2_MA0738.1 7.731105877401756 + +chr1 28669398 28669406 HIC2_MA0738.1 7.862556330410568 + +chr1 30744079 30744087 HIC2_MA0738.1 7.814143777334719 + +chr1 31065830 31065838 HIC2_MA0738.1 7.672924253994223 + +chr1 31065892 31065900 HIC2_MA0738.1 7.731105877401756 + +chr1 31938002 31938010 HIC2_MA0738.1 7.731901137817383 - +chr1 32014069 32014077 HIC2_MA0738.1 8.390120043494276 + +chr1 32500683 32500691 HIC2_MA0738.1 7.731105877401754 - +chr1 32817466 32817474 HIC2_MA0738.1 8.176426950968127 - +chr1 36464512 36464520 HIC2_MA0738.1 7.842303445218072 + +chr1 37931790 37931798 HIC2_MA0738.1 7.517412784875606 + +chr1 38012493 38012501 HIC2_MA0738.1 7.842303445218072 + +chr1 38173356 38173364 HIC2_MA0738.1 8.307877403976939 + +chr1 38873503 38873511 HIC2_MA0738.1 7.862556330410568 + +chr1 39509511 39509519 HIC2_MA0738.1 7.945594230343531 + +chr1 39576876 39576884 HIC2_MA0738.1 7.731105877401756 + +chr1 40097345 40097353 HIC2_MA0738.1 7.945594230343531 + +chr1 41574330 41574338 HIC2_MA0738.1 7.672924253994225 - +chr1 41574514 41574522 HIC2_MA0738.1 7.459231161468074 + +chr1 41728768 41728776 HIC2_MA0738.1 8.521570496503088 - +chr1 42036081 42036089 HIC2_MA0738.1 7.731105877401756 + +chr1 42456343 42456351 HIC2_MA0738.1 8.521570496503088 + +chr1 42456840 42456848 HIC2_MA0738.1 8.521570496503088 + +chr1 42682824 42682832 HIC2_MA0738.1 8.390120043494276 - +chr1 42767083 42767091 HIC2_MA0738.1 7.973753898226883 + +chr1 42924228 42924236 HIC2_MA0738.1 7.945594230343531 + +chr1 43836624 43836632 HIC2_MA0738.1 7.814143777334719 - +chr1 44986450 44986458 HIC2_MA0738.1 7.862556330410568 + +chr1 45327191 45327199 HIC2_MA0738.1 7.731105877401756 + +chr1 45327371 45327379 HIC2_MA0738.1 7.814143777334719 + +chr1 45491327 45491335 HIC2_MA0738.1 8.390120043494276 - +chr1 45491371 45491379 HIC2_MA0738.1 7.327780708459262 + +chr1 45551016 45551024 HIC2_MA0738.1 7.286580064251012 + +chr1 45750850 45750858 HIC2_MA0738.1 8.176426950968127 + +chr1 46667965 46667973 HIC2_MA0738.1 8.390120043494276 + +chr1 47997572 47997580 HIC2_MA0738.1 7.352897012025549 - +chr1 52842724 52842732 HIC2_MA0738.1 7.286580064251012 - +chr1 53197061 53197069 HIC2_MA0738.1 8.390120043494276 + +chr1 55288058 55288066 HIC2_MA0738.1 8.176426950968127 - +chr1 58816397 58816405 HIC2_MA0738.1 7.731105877401754 - +chr1 59046573 59046581 HIC2_MA0738.1 8.521570496503088 + +chr1 59926673 59926681 HIC2_MA0738.1 7.600450684808570 + +chr1 60390871 60390879 HIC2_MA0738.1 7.397777632067328 - +chr1 63563565 63563573 HIC2_MA0738.1 7.541473800985411 - +chr1 64745305 64745313 HIC2_MA0738.1 7.862556330410568 + +chr1 65148763 65148771 HIC2_MA0738.1 7.842303445218072 + +chr1 66381002 66381010 HIC2_MA0738.1 7.327780708459263 - +chr1 66925660 66925668 HIC2_MA0738.1 7.862556330410568 + +chr1 67736615 67736623 HIC2_MA0738.1 7.672924253994223 + +chr1 70354631 70354639 HIC2_MA0738.1 7.842303445218072 + +chr1 70685344 70685352 HIC2_MA0738.1 7.731901137817383 - +chr1 74767749 74767757 HIC2_MA0738.1 7.566364318525710 - +chr1 75339195 75339203 HIC2_MA0738.1 7.459231161468075 - +chr1 77219165 77219173 HIC2_MA0738.1 7.600450684808570 + +chr1 78620303 78620311 HIC2_MA0738.1 7.459231161468075 - +chr1 78620394 78620402 HIC2_MA0738.1 7.459231161468075 - +chr1 78649735 78649743 HIC2_MA0738.1 7.459231161468075 - +chr1 78649756 78649764 HIC2_MA0738.1 7.814143777334719 - +chr1 78854925 78854933 HIC2_MA0738.1 7.459231161468074 + +chr1 79468634 79468642 HIC2_MA0738.1 7.286580064251012 - +chr1 80218094 80218102 HIC2_MA0738.1 7.672924253994223 + +chr1 81802262 81802270 HIC2_MA0738.1 7.814143777334719 + +chr1 83500413 83500421 HIC2_MA0738.1 7.600450684808570 + +chr1 84078266 84078274 HIC2_MA0738.1 7.731105877401754 - +chr1 84388894 84388902 HIC2_MA0738.1 7.945594230343531 + +chr1 84970074 84970082 HIC2_MA0738.1 7.697814771534522 - +chr1 84997607 84997615 HIC2_MA0738.1 7.340635072726172 + diff --git a/demo/known_tfbs_chr1_hg38/HIF1A_MA1106.1.bed b/demo/known_tfbs_chr1_hg38/HIF1A_MA1106.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/HINFP_MA0131.2.bed b/demo/known_tfbs_chr1_hg38/HINFP_MA0131.2.bed new file mode 100644 index 0000000..04374cf --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/HINFP_MA0131.2.bed @@ -0,0 +1,468 @@ +chr1 778794 778805 HINFP_MA0131.2 10.874267338122118 - +chr1 779143 779154 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20786524 HINFP_MA0131.2 7.190232142113414 - +chr1 20786783 20786794 HINFP_MA0131.2 9.380066848038833 - +chr1 20786845 20786856 HINFP_MA0131.2 7.448905628683871 - +chr1 20787060 20787071 HINFP_MA0131.2 7.266921802121090 - +chr1 20787395 20787406 HINFP_MA0131.2 9.380066848038833 - +chr1 21762794 21762805 HINFP_MA0131.2 7.273317288307680 - +chr1 21783185 21783196 HINFP_MA0131.2 11.165306278365009 - +chr1 22025432 22025443 HINFP_MA0131.2 7.399861024040892 - +chr1 22052625 22052636 HINFP_MA0131.2 7.712531619279519 + +chr1 22052913 22052924 HINFP_MA0131.2 8.447605348229752 + +chr1 22452151 22452162 HINFP_MA0131.2 7.165365215373337 - +chr1 23019786 23019797 HINFP_MA0131.2 7.458129918013926 + +chr1 23019829 23019840 HINFP_MA0131.2 9.036056050922763 + +chr1 23868182 23868193 HINFP_MA0131.2 8.013486119250084 - +chr1 23959688 23959699 HINFP_MA0131.2 7.477074198552654 + +chr1 23980298 23980309 HINFP_MA0131.2 7.878826099246780 + +chr1 24930535 24930546 HINFP_MA0131.2 7.576821900861813 + +chr1 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109687927 HINFP_MA0131.2 8.932616943176763 + +chr1 109984787 109984798 HINFP_MA0131.2 7.425329814540508 - +chr1 109985117 109985128 HINFP_MA0131.2 7.417653112270724 - +chr1 110210745 110210756 HINFP_MA0131.2 10.466344369942439 - +chr1 110407754 110407765 HINFP_MA0131.2 12.021356806810040 + +chr1 110963537 110963548 HINFP_MA0131.2 7.380905917856575 + +chr1 111739526 111739537 HINFP_MA0131.2 7.943154110775899 - +chr1 111756069 111756080 HINFP_MA0131.2 8.815330074936275 - +chr1 112715236 112715247 HINFP_MA0131.2 7.234304707055085 - +chr1 112955994 112956005 HINFP_MA0131.2 7.995361154853894 + +chr1 113073170 113073181 HINFP_MA0131.2 7.880920263530518 - +chr1 113759172 113759183 HINFP_MA0131.2 7.692905000830470 - +chr1 113812307 113812318 HINFP_MA0131.2 9.182944915363951 + +chr1 113812528 113812539 HINFP_MA0131.2 8.653215995830291 + +chr1 113904690 113904701 HINFP_MA0131.2 8.505119530302933 + +chr1 114511215 114511226 HINFP_MA0131.2 7.335618762140755 - +chr1 114581774 114581785 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a/demo/known_tfbs_chr1_hg38/HLF_MA0043.2.bed b/demo/known_tfbs_chr1_hg38/HLF_MA0043.2.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/HLTF_MA0109.1.bed b/demo/known_tfbs_chr1_hg38/HLTF_MA0109.1.bed new file mode 100644 index 0000000..83495e5 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/HLTF_MA0109.1.bed @@ -0,0 +1,118 @@ +chr1 12162074 12162083 HLTF_MA0109.1 6.529722842711110 - +chr1 15617075 15617084 HLTF_MA0109.1 6.362327167963088 + +chr1 16567148 16567157 HLTF_MA0109.1 6.277586207364497 + +chr1 26744366 26744375 HLTF_MA0109.1 6.529722842711110 + +chr1 32222391 32222400 HLTF_MA0109.1 6.242041291091713 + +chr1 33127554 33127563 HLTF_MA0109.1 6.513974634552059 + +chr1 33431114 33431123 HLTF_MA0109.1 6.386756832075283 + +chr1 37595875 37595884 HLTF_MA0109.1 6.322462492816887 + +chr1 38475071 38475080 HLTF_MA0109.1 6.311034043531252 + +chr1 39026667 39026676 HLTF_MA0109.1 6.277586207364497 + +chr1 40450579 40450588 HLTF_MA0109.1 6.358007409089670 + 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112715586 HLTF_MA0109.1 6.242041737518459 + +chr1 113072913 113072922 HLTF_MA0109.1 6.293334415523550 + +chr1 113783644 113783653 HLTF_MA0109.1 6.317764079635745 - +chr1 113783874 113783883 HLTF_MA0109.1 6.253469740377349 + +chr1 113859362 113859371 HLTF_MA0109.1 6.634260511423432 + +chr1 113929142 113929151 HLTF_MA0109.1 6.317764079635743 - +chr1 116795004 116795013 HLTF_MA0109.1 6.317764079635745 + +chr1 116827490 116827499 HLTF_MA0109.1 6.242041291091713 + +chr1 119564931 119564940 HLTF_MA0109.1 6.253469740377349 + +chr1 119565446 119565455 HLTF_MA0109.1 6.565267758983894 + +chr1 119662754 119662763 HLTF_MA0109.1 6.529722842711110 + +chr1 120942594 120942603 HLTF_MA0109.1 6.289014656650132 + +chr1 145425696 145425705 HLTF_MA0109.1 6.293334415523550 - +chr1 145979863 145979872 HLTF_MA0109.1 6.349352549516620 - +chr1 147084456 147084465 HLTF_MA0109.1 6.295285835372199 + +chr1 147670332 147670341 HLTF_MA0109.1 6.565267758983894 + +chr1 148402709 148402718 HLTF_MA0109.1 6.358007409089670 + +chr1 149636760 149636769 HLTF_MA0109.1 6.289014656650132 + +chr1 149997724 149997733 HLTF_MA0109.1 6.426621507221483 - +chr1 150255716 150255725 HLTF_MA0109.1 6.411117376775107 - +chr1 150364207 150364216 HLTF_MA0109.1 6.242041291091714 + +chr1 157512040 157512049 HLTF_MA0109.1 6.306335630350108 - diff --git a/demo/known_tfbs_chr1_hg38/HMBOX1_MA0895.1.bed b/demo/known_tfbs_chr1_hg38/HMBOX1_MA0895.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/HNF1A_MA0046.2.bed b/demo/known_tfbs_chr1_hg38/HNF1A_MA0046.2.bed new file mode 100644 index 0000000..654c598 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/HNF1A_MA0046.2.bed @@ -0,0 +1,349 @@ +chr1 4267649 4267663 HNF1A_MA0046.2 9.663642943586570 + +chr1 4267649 4267663 HNF1A_MA0046.2 9.190908558012804 - +chr1 8097941 8097955 HNF1A_MA0046.2 7.317398457109146 + +chr1 8097941 8097955 HNF1A_MA0046.2 9.586305505577975 - +chr1 8604197 8604211 HNF1A_MA0046.2 6.654117649334735 + +chr1 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67214908 HNF1A_MA0046.2 7.625589816116089 - +chr1 68058058 68058072 HNF1A_MA0046.2 9.071134951019673 + +chr1 68058058 68058072 HNF1A_MA0046.2 9.311149649340576 - +chr1 70359256 70359270 HNF1A_MA0046.2 8.188004630262956 + +chr1 70359260 70359274 HNF1A_MA0046.2 8.068768025426531 + +chr1 70411995 70412009 HNF1A_MA0046.2 6.303597909179174 - +chr1 71081698 71081712 HNF1A_MA0046.2 6.940071689162158 - +chr1 74767720 74767734 HNF1A_MA0046.2 7.822189534503477 + +chr1 74767720 74767734 HNF1A_MA0046.2 7.928016534886885 - +chr1 74858219 74858233 HNF1A_MA0046.2 7.403793093226067 - +chr1 74858410 74858424 HNF1A_MA0046.2 6.637449889277232 + +chr1 75233539 75233553 HNF1A_MA0046.2 7.194490165606439 + +chr1 75784708 75784722 HNF1A_MA0046.2 6.251526993038754 + +chr1 75937245 75937259 HNF1A_MA0046.2 6.896994880706952 + +chr1 75937245 75937259 HNF1A_MA0046.2 6.579682580576346 - +chr1 75991667 75991681 HNF1A_MA0046.2 6.887076807195850 - +chr1 76331321 76331335 HNF1A_MA0046.2 6.338370531713869 + +chr1 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113784223 HNF1A_MA0046.2 6.646113901558513 + +chr1 113784209 113784223 HNF1A_MA0046.2 7.894695546644935 - +chr1 113859296 113859310 HNF1A_MA0046.2 7.406596062806300 + +chr1 113859827 113859841 HNF1A_MA0046.2 6.357804643590470 + +chr1 116110959 116110973 HNF1A_MA0046.2 9.401772805428497 + +chr1 116110959 116110973 HNF1A_MA0046.2 9.221236782797172 - +chr1 116597085 116597099 HNF1A_MA0046.2 8.821288447339992 + +chr1 116597085 116597099 HNF1A_MA0046.2 6.831145874372331 - +chr1 116597404 116597418 HNF1A_MA0046.2 6.735434431782540 + +chr1 116827039 116827053 HNF1A_MA0046.2 11.405922614506503 + +chr1 116827039 116827053 HNF1A_MA0046.2 12.268579024065813 - +chr1 117654565 117654579 HNF1A_MA0046.2 6.517440053731587 + +chr1 117654565 117654579 HNF1A_MA0046.2 7.158864379279501 - +chr1 118914720 118914734 HNF1A_MA0046.2 7.058661911410355 + +chr1 119324086 119324100 HNF1A_MA0046.2 6.945437336907956 + +chr1 119564920 119564934 HNF1A_MA0046.2 6.309935265791571 - +chr1 119565092 119565106 HNF1A_MA0046.2 6.743444731287433 + +chr1 119565408 119565422 HNF1A_MA0046.2 6.699432797609265 + +chr1 125183136 125183150 HNF1A_MA0046.2 6.622173221386239 - +chr1 125183720 125183734 HNF1A_MA0046.2 6.488508168327387 - +chr1 143238546 143238560 HNF1A_MA0046.2 7.096897722190837 + +chr1 153671871 153671885 HNF1A_MA0046.2 8.729312891311011 + +chr1 153671871 153671885 HNF1A_MA0046.2 6.800417829617177 - +chr1 153742639 153742653 HNF1A_MA0046.2 7.836072798133776 + +chr1 153742639 153742653 HNF1A_MA0046.2 6.991546735003512 - +chr1 153986929 153986943 HNF1A_MA0046.2 6.942293252817970 - +chr1 157562584 157562598 HNF1A_MA0046.2 6.373892863964574 - +chr1 157653248 157653262 HNF1A_MA0046.2 6.829248711731283 - +chr1 158204020 158204034 HNF1A_MA0046.2 7.551655025242232 - +chr1 159009345 159009359 HNF1A_MA0046.2 7.292831705670487 + +chr1 159010063 159010077 HNF1A_MA0046.2 7.399942383629017 - +chr1 159121947 159121961 HNF1A_MA0046.2 7.786262156503563 + +chr1 159122056 159122070 HNF1A_MA0046.2 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HNF1B_MA0153.2 8.377936622155877 - diff --git a/demo/known_tfbs_chr1_hg38/HNF4G_MA0484.1.bed b/demo/known_tfbs_chr1_hg38/HNF4G_MA0484.1.bed new file mode 100644 index 0000000..a682f79 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/HNF4G_MA0484.1.bed @@ -0,0 +1,350 @@ +chr1 1407699 1407713 HNF4G_MA0484.1 7.147016953316736 - +chr1 1407706 1407720 HNF4G_MA0484.1 10.844492104609792 - +chr1 1407713 1407727 HNF4G_MA0484.1 7.348201414728329 - +chr1 1678360 1678374 HNF4G_MA0484.1 7.023210257961201 - +chr1 2195240 2195254 HNF4G_MA0484.1 10.089173584757491 + +chr1 2555924 2555938 HNF4G_MA0484.1 7.963985927199069 + +chr1 2654360 2654374 HNF4G_MA0484.1 7.064044924725971 - +chr1 3491662 3491676 HNF4G_MA0484.1 8.708942990156407 - +chr1 3666648 3666662 HNF4G_MA0484.1 11.199198176756997 - +chr1 3677312 3677326 HNF4G_MA0484.1 8.593908543787322 - +chr1 5993055 5993069 HNF4G_MA0484.1 7.880496650040341 - +chr1 6026230 6026244 HNF4G_MA0484.1 11.832458744447452 + +chr1 6206409 6206423 HNF4G_MA0484.1 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b/demo/known_tfbs_chr1_hg38/HOXA5_MA0158.1.bed new file mode 100644 index 0000000..24000ab --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/HOXA5_MA0158.1.bed @@ -0,0 +1,117 @@ +chr1 1505328 1505335 HOXA5_MA0158.1 7.750446221720939 + +chr1 3666361 3666368 HOXA5_MA0158.1 7.462765190932026 + +chr1 8283243 8283250 HOXA5_MA0158.1 7.413975413665032 + +chr1 8283247 8283254 HOXA5_MA0158.1 7.750446221720937 - +chr1 8629686 8629693 HOXA5_MA0158.1 7.750446221720939 + +chr1 10694353 10694360 HOXA5_MA0158.1 7.190833112343789 - +chr1 12449803 12449810 HOXA5_MA0158.1 7.190833112343791 + +chr1 15835390 15835397 HOXA5_MA0158.1 7.750446221720937 - +chr1 16513932 16513939 HOXA5_MA0158.1 7.462765190932025 - +chr1 16514154 16514161 HOXA5_MA0158.1 7.462765190932025 + +chr1 16896104 16896111 HOXA5_MA0158.1 7.462765190932025 - +chr1 16896325 16896332 HOXA5_MA0158.1 7.462765190932025 + +chr1 17141679 17141686 HOXA5_MA0158.1 7.190833112343789 - +chr1 22026155 22026162 HOXA5_MA0158.1 7.413975413665032 + +chr1 23959160 23959167 HOXA5_MA0158.1 7.190833112343791 + +chr1 24391895 24391902 HOXA5_MA0158.1 7.750446221720937 - +chr1 27365836 27365843 HOXA5_MA0158.1 7.413975413665032 + +chr1 28552563 28552570 HOXA5_MA0158.1 7.413975413665032 + +chr1 31937901 31937908 HOXA5_MA0158.1 7.462765190932026 + +chr1 36149791 36149798 HOXA5_MA0158.1 7.462765190932025 + +chr1 40450447 40450454 HOXA5_MA0158.1 7.413975413665030 - +chr1 40628697 40628704 HOXA5_MA0158.1 7.190833112343789 - +chr1 40699291 40699298 HOXA5_MA0158.1 7.413975413665030 - +chr1 42682198 42682205 HOXA5_MA0158.1 7.190833112343791 + +chr1 44684627 44684634 HOXA5_MA0158.1 7.462765190932025 + +chr1 45340073 45340080 HOXA5_MA0158.1 7.413975413665030 - +chr1 45491296 45491303 HOXA5_MA0158.1 7.413975413665030 - +chr1 45583363 45583370 HOXA5_MA0158.1 7.190833112343791 + +chr1 48730455 48730462 HOXA5_MA0158.1 7.190833112343791 + +chr1 51235536 51235543 HOXA5_MA0158.1 7.462765190932025 - +chr1 58573660 58573667 HOXA5_MA0158.1 7.190833112343789 - 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HOXA5_MA0158.1 7.190833112343791 + +chr1 99758977 99758984 HOXA5_MA0158.1 7.462765190932025 - +chr1 99784532 99784539 HOXA5_MA0158.1 7.413975413665030 - +chr1 100895179 100895186 HOXA5_MA0158.1 7.190833112343789 - +chr1 101199332 101199339 HOXA5_MA0158.1 7.462765190932025 - +chr1 101257909 101257916 HOXA5_MA0158.1 7.413975413665030 - +chr1 101567808 101567815 HOXA5_MA0158.1 7.462765190932026 + +chr1 102435223 102435230 HOXA5_MA0158.1 7.190833112343789 - +chr1 104759785 104759792 HOXA5_MA0158.1 7.190833112343789 - +chr1 106727216 106727223 HOXA5_MA0158.1 7.413975413665030 - +chr1 107016990 107016997 HOXA5_MA0158.1 7.190833112343789 - +chr1 107499977 107499984 HOXA5_MA0158.1 7.190833112343791 + +chr1 107777115 107777122 HOXA5_MA0158.1 7.413975413665032 + +chr1 107934984 107934991 HOXA5_MA0158.1 7.190833112343791 + +chr1 107935514 107935521 HOXA5_MA0158.1 7.462765190932025 + +chr1 107936516 107936523 HOXA5_MA0158.1 7.413975413665030 - +chr1 111600553 111600560 HOXA5_MA0158.1 7.190833112343789 - +chr1 112957424 112957431 HOXA5_MA0158.1 7.462765190932025 + +chr1 113031499 113031506 HOXA5_MA0158.1 7.462765190932025 - +chr1 113784290 113784297 HOXA5_MA0158.1 7.462765190932025 - +chr1 115771783 115771790 HOXA5_MA0158.1 7.462765190932025 - +chr1 116168810 116168817 HOXA5_MA0158.1 7.190833112343789 - +chr1 116515437 116515444 HOXA5_MA0158.1 7.750446221720937 - +chr1 119565092 119565099 HOXA5_MA0158.1 7.190833112343789 - +chr1 120844169 120844176 HOXA5_MA0158.1 7.462765190932025 + +chr1 120844173 120844180 HOXA5_MA0158.1 7.750446221720937 - +chr1 120850851 120850858 HOXA5_MA0158.1 7.462765190932025 + +chr1 120942724 120942731 HOXA5_MA0158.1 7.462765190932025 - +chr1 143232277 143232284 HOXA5_MA0158.1 7.190833112343789 - +chr1 143251397 143251404 HOXA5_MA0158.1 7.462765190932025 - +chr1 144523891 144523898 HOXA5_MA0158.1 7.462765190932025 + +chr1 144551811 144551818 HOXA5_MA0158.1 7.462765190932025 + +chr1 144560698 144560705 HOXA5_MA0158.1 7.462765190932025 + 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8.245870555771763 - +chr1 16514009 16514018 HOXB13_MA0901.1 8.675362712268591 + +chr1 17141796 17141805 HOXB13_MA0901.1 8.083170221703419 - +chr1 18902687 18902696 HOXB13_MA0901.1 9.900447027296524 + +chr1 19711166 19711175 HOXB13_MA0901.1 9.091397770405479 - +chr1 25430640 25430649 HOXB13_MA0901.1 7.528794881423054 - +chr1 26472474 26472483 HOXB13_MA0901.1 7.936561148678035 + +chr1 28329194 28329203 HOXB13_MA0901.1 9.106252297265245 - +chr1 30718160 30718169 HOXB13_MA0901.1 9.643165822556286 - +chr1 31296907 31296916 HOXB13_MA0901.1 7.705804853966923 - +chr1 32073496 32073505 HOXB13_MA0901.1 9.654181672396270 - +chr1 34859991 34860000 HOXB13_MA0901.1 8.280226374513086 - +chr1 36023615 36023624 HOXB13_MA0901.1 10.771988343106985 - +chr1 39196269 39196278 HOXB13_MA0901.1 7.523703926779119 + +chr1 39606377 39606386 HOXB13_MA0901.1 8.250961510415697 + +chr1 39799318 39799327 HOXB13_MA0901.1 9.926461128473269 + +chr1 39817502 39817511 HOXB13_MA0901.1 9.926461128473269 - +chr1 44819505 44819514 HOXB13_MA0901.1 9.698444787830418 + +chr1 45491533 45491542 HOXB13_MA0901.1 11.292651339437112 + +chr1 45583833 45583842 HOXB13_MA0901.1 9.672430686653673 - +chr1 45687319 45687328 HOXB13_MA0901.1 9.638074867912351 + +chr1 46043617 46043626 HOXB13_MA0901.1 9.900447027296524 + +chr1 46063143 46063152 HOXB13_MA0901.1 7.523703926779119 - +chr1 51285024 51285033 HOXB13_MA0901.1 7.460832171647853 + +chr1 52056042 52056051 HOXB13_MA0901.1 8.112863102944759 + +chr1 52056065 52056074 HOXB13_MA0901.1 8.261977360255681 - +chr1 58546061 58546070 HOXB13_MA0901.1 9.012117173830363 + +chr1 60391528 60391537 HOXB13_MA0901.1 8.877364951734698 + +chr1 60391546 60391555 HOXB13_MA0901.1 8.356701955404571 + +chr1 62800515 62800524 HOXB13_MA0901.1 8.006683620657974 - +chr1 63125077 63125086 HOXB13_MA0901.1 8.588978691173779 - +chr1 63125355 63125364 HOXB13_MA0901.1 7.704284412908824 + +chr1 63317383 63317392 HOXB13_MA0901.1 9.230308600657370 + +chr1 64223608 64223617 HOXB13_MA0901.1 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75786642 HOXB13_MA0901.1 8.006683620657974 - +chr1 75786634 75786643 HOXB13_MA0901.1 8.057156120526674 - +chr1 77978425 77978434 HOXB13_MA0901.1 7.399647623386994 - +chr1 78004713 78004722 HOXB13_MA0901.1 7.714047985124658 - +chr1 79193393 79193402 HOXB13_MA0901.1 7.486020624327846 + +chr1 79472388 79472397 HOXB13_MA0901.1 7.486020624327846 + +chr1 79519645 79519654 HOXB13_MA0901.1 7.699193458264889 + +chr1 79694288 79694297 HOXB13_MA0901.1 8.224947409238952 + +chr1 79694648 79694657 HOXB13_MA0901.1 9.151767690323545 - +chr1 79694986 79694995 HOXB13_MA0901.1 7.705804853966923 - +chr1 80639977 80639986 HOXB13_MA0901.1 8.083170221703419 - +chr1 80640125 80640134 HOXB13_MA0901.1 8.986103072653618 + +chr1 80641279 80641288 HOXB13_MA0901.1 7.991840113952168 - +chr1 83406106 83406115 HOXB13_MA0901.1 7.989035098268537 - +chr1 83485630 83485639 HOXB13_MA0901.1 7.404738578030929 + +chr1 83485694 83485703 HOXB13_MA0901.1 9.900447027296524 + +chr1 84573277 84573286 HOXB13_MA0901.1 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89694178 HOXB13_MA0901.1 7.963020997091792 - +chr1 89782008 89782017 HOXB13_MA0901.1 7.446422022092448 - +chr1 90510042 90510051 HOXB13_MA0901.1 8.443489996477529 + +chr1 91572146 91572155 HOXB13_MA0901.1 7.705804853966923 - +chr1 91572186 91572195 HOXB13_MA0901.1 7.714047985124658 - +chr1 92537814 92537823 HOXB13_MA0901.1 7.922827000147402 - +chr1 92975814 92975823 HOXB13_MA0901.1 8.022945169772848 + +chr1 93181012 93181021 HOXB13_MA0901.1 7.592200106614631 - +chr1 93346698 93346707 HOXB13_MA0901.1 7.922827000147402 + +chr1 93704370 93704379 HOXB13_MA0901.1 7.593898760513030 + +chr1 94963254 94963263 HOXB13_MA0901.1 8.443489996477529 - +chr1 95095734 95095743 HOXB13_MA0901.1 7.593898760513030 + +chr1 97011153 97011162 HOXB13_MA0901.1 9.617151721379541 - +chr1 97461764 97461773 HOXB13_MA0901.1 8.006683620657974 + +chr1 98871837 98871846 HOXB13_MA0901.1 8.068315694843651 + +chr1 99180660 99180669 HOXB13_MA0901.1 9.638074867912351 - +chr1 99752320 99752329 HOXB13_MA0901.1 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11.292651339437112 + +chr1 154559424 154559433 HOXB13_MA0901.1 7.442358000761663 + +chr1 154791523 154791532 HOXB13_MA0901.1 8.986103072653618 + +chr1 155227288 155227297 HOXB13_MA0901.1 8.006683620657974 + +chr1 156213476 156213485 HOXB13_MA0901.1 7.593898760513031 - +chr1 156282991 156283000 HOXB13_MA0901.1 7.963251250879551 - +chr1 156457469 156457478 HOXB13_MA0901.1 8.631099596834442 - +chr1 158286824 158286833 HOXB13_MA0901.1 8.181212423918797 + +chr1 158952367 158952376 HOXB13_MA0901.1 8.224947409238952 - +chr1 159076787 159076796 HOXB13_MA0901.1 8.280226374513086 + +chr1 159077160 159077169 HOXB13_MA0901.1 8.465440076323491 - +chr1 159077641 159077650 HOXB13_MA0901.1 9.612060766735606 - +chr1 159923511 159923520 HOXB13_MA0901.1 9.106252297265245 - +chr1 161045999 161046008 HOXB13_MA0901.1 8.128685614761718 + +chr1 161098225 161098234 HOXB13_MA0901.1 8.443489996477529 - +chr1 161166334 161166343 HOXB13_MA0901.1 11.318665440613858 - +chr1 161185592 161185601 HOXB13_MA0901.1 10.771988343106985 + +chr1 161185975 161185984 HOXB13_MA0901.1 8.356701955404571 + +chr1 161530518 161530527 HOXB13_MA0901.1 7.592200106614631 + +chr1 162530745 162530754 HOXB13_MA0901.1 7.442358000761663 - +chr1 163322236 163322245 HOXB13_MA0901.1 8.112863102944759 - +chr1 165686876 165686885 HOXB13_MA0901.1 11.292651339437112 + +chr1 166490116 166490125 HOXB13_MA0901.1 7.838104288516782 - +chr1 167220077 167220086 HOXB13_MA0901.1 7.688033883947913 + +chr1 167328967 167328976 HOXB13_MA0901.1 7.699193458264890 - +chr1 167500512 167500521 HOXB13_MA0901.1 8.280226374513086 - +chr1 168226804 168226813 HOXB13_MA0901.1 9.926461128473269 - +chr1 168467519 168467528 HOXB13_MA0901.1 8.443489996477529 + +chr1 169012720 169012729 HOXB13_MA0901.1 7.420407920915703 + +chr1 169309482 169309491 HOXB13_MA0901.1 8.588978691173779 + +chr1 169390529 169390538 HOXB13_MA0901.1 9.151767690323545 + +chr1 169681193 169681202 HOXB13_MA0901.1 7.714047985124658 + +chr1 169711239 169711248 HOXB13_MA0901.1 7.991840113952168 - +chr1 170214454 170214463 HOXB13_MA0901.1 8.877364951734698 - +chr1 171251981 171251990 HOXB13_MA0901.1 9.672430686653673 + +chr1 172342982 172342991 HOXB13_MA0901.1 7.471177117622040 + +chr1 172343333 172343342 HOXB13_MA0901.1 7.688033883947913 + +chr1 172358808 172358817 HOXB13_MA0901.1 7.593898760513030 + +chr1 172745526 172745535 HOXB13_MA0901.1 9.106252297265245 - +chr1 173020462 173020471 HOXB13_MA0901.1 7.922827000147402 - +chr1 173429729 173429738 HOXB13_MA0901.1 9.080238196088500 - +chr1 175307447 175307456 HOXB13_MA0901.1 9.617151721379541 - +chr1 175390421 175390430 HOXB13_MA0901.1 8.465440076323491 + +chr1 176207920 176207929 HOXB13_MA0901.1 9.379784030966396 - +chr1 178093440 178093449 HOXB13_MA0901.1 7.460832171647853 + +chr1 178659937 178659946 HOXB13_MA0901.1 9.612060766735606 + +chr1 181062844 181062853 HOXB13_MA0901.1 7.593898760513030 + +chr1 183591034 183591043 HOXB13_MA0901.1 8.631099596834442 + +chr1 183911746 183911755 HOXB13_MA0901.1 7.442358000761663 - +chr1 184492124 184492133 HOXB13_MA0901.1 9.926461128473269 - +chr1 184649596 184649605 HOXB13_MA0901.1 7.565824832439783 - +chr1 185156381 185156390 HOXB13_MA0901.1 10.269569263875285 + +chr1 186519005 186519014 HOXB13_MA0901.1 8.631099596834442 + +chr1 186618338 186618347 HOXB13_MA0901.1 8.057156120526674 - +chr1 186680448 186680457 HOXB13_MA0901.1 8.224947409238952 - +chr1 187073304 187073313 HOXB13_MA0901.1 7.549718027955865 - +chr1 187987013 187987022 HOXB13_MA0901.1 8.128685614761718 + +chr1 188050192 188050201 HOXB13_MA0901.1 9.672430686653673 - +chr1 190377325 190377334 HOXB13_MA0901.1 9.638074867912351 + +chr1 191886951 191886960 HOXB13_MA0901.1 9.096488725049413 - +chr1 192477577 192477586 HOXB13_MA0901.1 9.379784030966396 - +chr1 192516963 192516972 HOXB13_MA0901.1 8.250961510415697 - +chr1 192530559 192530568 HOXB13_MA0901.1 8.006683620657974 - +chr1 192530560 192530569 HOXB13_MA0901.1 8.057156120526674 - +chr1 192530849 192530858 HOXB13_MA0901.1 7.619912861689775 + +chr1 192539309 192539318 HOXB13_MA0901.1 7.989035098268537 - +chr1 192640221 192640230 HOXB13_MA0901.1 9.096488725049413 - +chr1 193070882 193070891 HOXB13_MA0901.1 9.379784030966396 - +chr1 193271491 193271500 HOXB13_MA0901.1 9.612060766735606 - +chr1 193438003 193438012 HOXB13_MA0901.1 7.731818955143669 + +chr1 194280022 194280031 HOXB13_MA0901.1 7.619912861689775 + +chr1 194280047 194280056 HOXB13_MA0901.1 7.936561148678035 + +chr1 194295731 194295740 HOXB13_MA0901.1 9.617151721379541 + diff --git a/demo/known_tfbs_chr1_hg38/HOXB2_MA0902.1.bed b/demo/known_tfbs_chr1_hg38/HOXB2_MA0902.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/HOXB3_MA0903.1.bed b/demo/known_tfbs_chr1_hg38/HOXB3_MA0903.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/HOXC10_MA0905.1.bed b/demo/known_tfbs_chr1_hg38/HOXC10_MA0905.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/HOXC11_MA0651.1.bed b/demo/known_tfbs_chr1_hg38/HOXC11_MA0651.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/HOXC12_MA0906.1.bed b/demo/known_tfbs_chr1_hg38/HOXC12_MA0906.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/HOXC13_MA0907.1.bed b/demo/known_tfbs_chr1_hg38/HOXC13_MA0907.1.bed new file mode 100644 index 0000000..cb15eeb --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/HOXC13_MA0907.1.bed @@ -0,0 +1,115 @@ +chr1 2578150 2578160 HOXC13_MA0907.1 7.321094127915994 - +chr1 6026401 6026411 HOXC13_MA0907.1 6.669368311082148 + +chr1 6861818 6861828 HOXC13_MA0907.1 9.452471687095738 + +chr1 6861934 6861944 HOXC13_MA0907.1 7.392746832736056 + +chr1 8629770 8629780 HOXC13_MA0907.1 7.464681959735310 + +chr1 9950669 9950679 HOXC13_MA0907.1 8.082240251654778 + +chr1 11926452 11926462 HOXC13_MA0907.1 7.741032513271899 - +chr1 12040442 12040452 HOXC13_MA0907.1 6.825727844719899 - +chr1 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70411246 HOXC13_MA0907.1 6.705345216868509 + +chr1 73821684 73821694 HOXC13_MA0907.1 6.745210361920787 - +chr1 74198641 74198651 HOXC13_MA0907.1 6.808230808135282 + +chr1 74198699 74198709 HOXC13_MA0907.1 6.835731891210278 - +chr1 74714191 74714201 HOXC13_MA0907.1 7.652245182884834 - +chr1 74858255 74858265 HOXC13_MA0907.1 9.725269896210232 + +chr1 75339296 75339306 HOXC13_MA0907.1 7.452016398945006 + +chr1 76190967 76190977 HOXC13_MA0907.1 7.979127277066281 + +chr1 76294665 76294675 HOXC13_MA0907.1 6.764079186390217 + +chr1 76425335 76425345 HOXC13_MA0907.1 9.208635944566986 + +chr1 77219612 77219622 HOXC13_MA0907.1 6.855836889311925 + +chr1 79260494 79260504 HOXC13_MA0907.1 7.019026153572409 + +chr1 79461306 79461316 HOXC13_MA0907.1 7.708773903911672 + +chr1 79468844 79468854 HOXC13_MA0907.1 11.650825724156402 + +chr1 79519141 79519151 HOXC13_MA0907.1 6.805751842087406 - +chr1 79694287 79694297 HOXC13_MA0907.1 7.296763259948246 + +chr1 81598614 81598624 HOXC13_MA0907.1 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100076273 HOXC13_MA0907.1 6.679091893900901 + +chr1 100351965 100351975 HOXC13_MA0907.1 11.165745909629878 - +chr1 101388997 101389007 HOXC13_MA0907.1 7.896080925413584 + +chr1 102242100 102242110 HOXC13_MA0907.1 7.381635608082614 - +chr1 104768640 104768650 HOXC13_MA0907.1 6.745210361920787 + +chr1 107016418 107016428 HOXC13_MA0907.1 7.019026153572409 + +chr1 107132511 107132521 HOXC13_MA0907.1 7.437530030934040 - +chr1 107499599 107499609 HOXC13_MA0907.1 7.647976222097441 + +chr1 107529913 107529923 HOXC13_MA0907.1 8.294240778955041 - +chr1 111739692 111739702 HOXC13_MA0907.1 7.571095998636470 - +chr1 113880852 113880862 HOXC13_MA0907.1 8.083794587791639 + +chr1 115099588 115099598 HOXC13_MA0907.1 7.389239416273123 - +chr1 115649505 115649515 HOXC13_MA0907.1 8.154175378654031 + +chr1 116596897 116596907 HOXC13_MA0907.1 7.467646292940614 - +chr1 116628617 116628627 HOXC13_MA0907.1 6.824620666556836 + +chr1 119647933 119647943 HOXC13_MA0907.1 9.004105879148071 - +chr1 125179933 125179943 HOXC13_MA0907.1 6.679091893900901 - +chr1 125183032 125183042 HOXC13_MA0907.1 6.679091893900901 - +chr1 143184970 143184980 HOXC13_MA0907.1 6.679091893900901 + +chr1 143186743 143186753 HOXC13_MA0907.1 6.679091893900901 + +chr1 143193050 143193060 HOXC13_MA0907.1 6.679091893900901 + +chr1 143195281 143195291 HOXC13_MA0907.1 6.679091893900901 + +chr1 143213777 143213787 HOXC13_MA0907.1 6.679091893900901 + +chr1 143214245 143214255 HOXC13_MA0907.1 6.679091893900901 + +chr1 143216020 143216030 HOXC13_MA0907.1 6.679091893900901 + +chr1 143222283 143222293 HOXC13_MA0907.1 6.679091893900901 + +chr1 143222751 143222761 HOXC13_MA0907.1 6.679091893900901 + +chr1 143231675 143231685 HOXC13_MA0907.1 6.679091893900901 + +chr1 143237076 143237086 HOXC13_MA0907.1 6.679091893900901 + +chr1 143238186 143238196 HOXC13_MA0907.1 6.679091893900901 + +chr1 143239962 143239972 HOXC13_MA0907.1 6.679091893900901 + +chr1 143249945 143249955 HOXC13_MA0907.1 6.679091893900901 - +chr1 143253055 143253065 HOXC13_MA0907.1 6.679091893900901 - +chr1 143254167 143254177 HOXC13_MA0907.1 6.679091893900901 - +chr1 143265117 143265127 HOXC13_MA0907.1 6.679091893900901 + +chr1 143266132 143266142 HOXC13_MA0907.1 6.679091893900901 + +chr1 145997048 145997058 HOXC13_MA0907.1 8.835838025087284 + +chr1 146037455 146037465 HOXC13_MA0907.1 7.737225837429264 - +chr1 149887943 149887953 HOXC13_MA0907.1 8.491990596846991 - +chr1 151048144 151048154 HOXC13_MA0907.1 6.904845957376009 - +chr1 151282024 151282034 HOXC13_MA0907.1 8.835169596823880 - diff --git a/demo/known_tfbs_chr1_hg38/HOXD11_MA0908.1.bed b/demo/known_tfbs_chr1_hg38/HOXD11_MA0908.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/HOXD12_MA0873.1.bed b/demo/known_tfbs_chr1_hg38/HOXD12_MA0873.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/HOXD13_MA0909.1.bed b/demo/known_tfbs_chr1_hg38/HOXD13_MA0909.1.bed new file mode 100644 index 0000000..2cada19 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/HOXD13_MA0909.1.bed @@ -0,0 +1,229 @@ +chr1 1505132 1505141 HOXD13_MA0909.1 8.342514150592219 - +chr1 7994394 7994403 HOXD13_MA0909.1 7.954046453702211 + +chr1 8283106 8283115 HOXD13_MA0909.1 10.695658571974702 - +chr1 8817862 8817871 HOXD13_MA0909.1 7.597598244038635 + +chr1 9069657 9069666 HOXD13_MA0909.1 8.021726107959612 - +chr1 9950670 9950679 HOXD13_MA0909.1 7.607881104500594 + +chr1 12229875 12229884 HOXD13_MA0909.1 8.485813015273710 + +chr1 12449536 12449545 HOXD13_MA0909.1 7.613892498246781 - +chr1 12620205 12620214 HOXD13_MA0909.1 8.116297122607161 - +chr1 15617026 15617035 HOXD13_MA0909.1 9.499284200875223 - +chr1 16514009 16514018 HOXD13_MA0909.1 7.799375477106356 + +chr1 16905492 16905501 HOXD13_MA0909.1 8.454256299279905 - +chr1 17141796 17141805 HOXD13_MA0909.1 8.179486197943930 - +chr1 17142031 17142040 HOXD13_MA0909.1 7.675560758757993 + +chr1 18902687 18902696 HOXD13_MA0909.1 10.510175593115127 + +chr1 19711166 19711175 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HSF1_MA0486.2 3.960354108359086 - +chr1 26921506 26921518 HSF1_MA0486.2 7.037778555520173 + +chr1 27659762 27659774 HSF1_MA0486.2 6.284134952748953 + +chr1 31549664 31549676 HSF1_MA0486.2 8.902791916362146 + +chr1 31789179 31789191 HSF1_MA0486.2 5.164554370754146 - +chr1 32650868 32650880 HSF1_MA0486.2 9.941563878879791 + +chr1 33127323 33127335 HSF1_MA0486.2 6.552486066787381 + +chr1 38474855 38474867 HSF1_MA0486.2 9.155837428954753 - +chr1 39196321 39196333 HSF1_MA0486.2 6.956663701016893 + +chr1 39598838 39598850 HSF1_MA0486.2 7.959938924333447 - +chr1 40385986 40385998 HSF1_MA0486.2 7.509890556100228 + +chr1 43650390 43650402 HSF1_MA0486.2 4.818137934800812 - +chr1 44213290 44213302 HSF1_MA0486.2 7.345400208620002 - +chr1 44721773 44721785 HSF1_MA0486.2 3.975290506938449 + +chr1 44739661 44739673 HSF1_MA0486.2 4.003060907341207 - +chr1 45011370 45011382 HSF1_MA0486.2 4.240261740646257 - +chr1 45750487 45750499 HSF1_MA0486.2 6.857914909102027 + +chr1 51729274 51729286 HSF1_MA0486.2 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7.857445272350727 - +chr1 101436641 101436653 HSF1_MA0486.2 9.904187979727627 - +chr1 102241900 102241912 HSF1_MA0486.2 4.254829164697497 - +chr1 103326954 103326966 HSF1_MA0486.2 7.868123005418568 + +chr1 108551548 108551560 HSF1_MA0486.2 6.690914727269634 + +chr1 110787395 110787407 HSF1_MA0486.2 4.488313764805136 - +chr1 110873004 110873016 HSF1_MA0486.2 7.072568749537757 - +chr1 113390740 113390752 HSF1_MA0486.2 6.320907172580770 + +chr1 113759289 113759301 HSF1_MA0486.2 4.463985004534623 - +chr1 113812407 113812419 HSF1_MA0486.2 7.128916972633743 - +chr1 114716610 114716622 HSF1_MA0486.2 4.357132481255067 - +chr1 116110798 116110810 HSF1_MA0486.2 5.624589786434488 - +chr1 116139115 116139127 HSF1_MA0486.2 5.627739176596351 + +chr1 116515477 116515489 HSF1_MA0486.2 4.790674698053238 + +chr1 116737707 116737719 HSF1_MA0486.2 4.777118752867461 - +chr1 117059575 117059587 HSF1_MA0486.2 7.381873681418756 - +chr1 117929706 117929718 HSF1_MA0486.2 4.353195940717527 - +chr1 120850537 120850549 HSF1_MA0486.2 4.391408775886316 - +chr1 125168095 125168107 HSF1_MA0486.2 7.499667210660379 + +chr1 125168638 125168650 HSF1_MA0486.2 7.914298238901956 + +chr1 125177351 125177363 HSF1_MA0486.2 7.499667210660379 + +chr1 125179479 125179491 HSF1_MA0486.2 6.523821691326544 - +chr1 125179827 125179839 HSF1_MA0486.2 7.499667210660379 + +chr1 125180295 125180307 HSF1_MA0486.2 7.499667210660379 + +chr1 125180864 125180876 HSF1_MA0486.2 4.375789487857251 + +chr1 125181628 125181640 HSF1_MA0486.2 7.499667210660379 + +chr1 125182926 125182938 HSF1_MA0486.2 7.499667210660379 + +chr1 125183383 125183395 HSF1_MA0486.2 7.499667210660379 + +chr1 125184001 125184013 HSF1_MA0486.2 7.499667210660379 + +chr1 143185074 143185086 HSF1_MA0486.2 7.499667210660379 - +chr1 143185810 143185822 HSF1_MA0486.2 4.375789487857251 - +chr1 143186379 143186391 HSF1_MA0486.2 7.499667210660379 - +chr1 143192127 143192139 HSF1_MA0486.2 4.375789487857251 - +chr1 143192686 143192698 HSF1_MA0486.2 7.499667210660379 - +chr1 143193154 143193166 HSF1_MA0486.2 7.499667210660379 - +chr1 143194452 143194464 HSF1_MA0486.2 7.499667210660379 - +chr1 143194917 143194929 HSF1_MA0486.2 7.499667210660379 - +chr1 143195385 143195397 HSF1_MA0486.2 7.499667210660379 - +chr1 143213881 143213893 HSF1_MA0486.2 7.499667210660379 - diff --git a/demo/known_tfbs_chr1_hg38/HSF2_MA0770.1.bed b/demo/known_tfbs_chr1_hg38/HSF2_MA0770.1.bed new file mode 100644 index 0000000..8eafbee --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/HSF2_MA0770.1.bed @@ -0,0 +1,119 @@ +chr1 1511819 1511831 HSF2_MA0770.1 5.562773019588925 + +chr1 3656751 3656763 HSF2_MA0770.1 5.747038376121012 - +chr1 3656756 3656768 HSF2_MA0770.1 7.669918736422269 + +chr1 6393599 6393611 HSF2_MA0770.1 12.809358876945119 + +chr1 8283438 8283450 HSF2_MA0770.1 5.580732932400783 + +chr1 11909087 11909099 HSF2_MA0770.1 5.766716305988401 - +chr1 11934717 11934729 HSF2_MA0770.1 5.778063204073050 + +chr1 15231762 15231774 HSF2_MA0770.1 8.661305802817408 - +chr1 15524782 15524794 HSF2_MA0770.1 6.381811523471995 - +chr1 15524787 15524799 HSF2_MA0770.1 5.646407609894355 + +chr1 15835792 15835804 HSF2_MA0770.1 10.549081542099954 + +chr1 15848112 15848124 HSF2_MA0770.1 7.701516077487445 - +chr1 23168885 23168897 HSF2_MA0770.1 6.462028713150246 - +chr1 24930255 24930267 HSF2_MA0770.1 5.619679202978554 - +chr1 24930513 24930525 HSF2_MA0770.1 5.414457499524325 - +chr1 25032248 25032260 HSF2_MA0770.1 5.988236014023490 - +chr1 25247480 25247492 HSF2_MA0770.1 5.958785369002777 - +chr1 26744360 26744372 HSF2_MA0770.1 6.379143805982023 + +chr1 26921501 26921513 HSF2_MA0770.1 5.570298928056939 - +chr1 26921506 26921518 HSF2_MA0770.1 9.600836382044070 + +chr1 27626463 27626475 HSF2_MA0770.1 5.747753066422907 + +chr1 27659762 27659774 HSF2_MA0770.1 6.113448456509492 + +chr1 31549664 31549676 HSF2_MA0770.1 6.852438513343060 + +chr1 31645064 31645076 HSF2_MA0770.1 6.886891670998727 - +chr1 31789179 31789191 HSF2_MA0770.1 8.303804901331672 - +chr1 32650868 32650880 HSF2_MA0770.1 10.502529137052075 + +chr1 33127323 33127335 HSF2_MA0770.1 6.839212943861234 + +chr1 36374328 36374340 HSF2_MA0770.1 6.639643891513805 - +chr1 36386703 36386715 HSF2_MA0770.1 5.791376047564919 - +chr1 36397512 36397524 HSF2_MA0770.1 7.035167820339867 + +chr1 38474855 38474867 HSF2_MA0770.1 12.583505151092028 - +chr1 38474860 38474872 HSF2_MA0770.1 8.167594851477059 + +chr1 39598838 39598850 HSF2_MA0770.1 11.360237927483608 - +chr1 39799353 39799365 HSF2_MA0770.1 5.575946845297334 + +chr1 40385986 40385998 HSF2_MA0770.1 7.072186345868795 + +chr1 41361664 41361676 HSF2_MA0770.1 5.686375507251056 - +chr1 43650390 43650402 HSF2_MA0770.1 8.388144972024048 - +chr1 44213290 44213302 HSF2_MA0770.1 8.318649193022759 - +chr1 45011370 45011382 HSF2_MA0770.1 5.611863171640825 - +chr1 45303602 45303614 HSF2_MA0770.1 6.886891670998727 - +chr1 45583369 45583381 HSF2_MA0770.1 5.827120845914320 + +chr1 45750487 45750499 HSF2_MA0770.1 8.422917460581619 + +chr1 51729274 51729286 HSF2_MA0770.1 6.805121098598331 - +chr1 53890026 53890038 HSF2_MA0770.1 7.049740410437520 - +chr1 54715964 54715976 HSF2_MA0770.1 6.233789200370028 - +chr1 55288424 55288436 HSF2_MA0770.1 5.837729929802048 - +chr1 56045315 56045327 HSF2_MA0770.1 6.246065039769467 + +chr1 56045464 56045476 HSF2_MA0770.1 5.706634837098173 - +chr1 58546171 58546183 HSF2_MA0770.1 5.591152173107647 - +chr1 59007781 59007793 HSF2_MA0770.1 10.689705934312061 - +chr1 59007786 59007798 HSF2_MA0770.1 9.448789178809443 + +chr1 59013764 59013776 HSF2_MA0770.1 5.837035605528280 + +chr1 59020194 59020206 HSF2_MA0770.1 10.465916288326371 + +chr1 59947648 59947660 HSF2_MA0770.1 5.419422027047181 - +chr1 64895732 64895744 HSF2_MA0770.1 7.561013439526898 - +chr1 64966762 64966774 HSF2_MA0770.1 6.249733775505014 - +chr1 64966767 64966779 HSF2_MA0770.1 6.249733775505018 + +chr1 66283546 66283558 HSF2_MA0770.1 7.307200601677859 + +chr1 66335641 66335653 HSF2_MA0770.1 8.816539124486983 + +chr1 66374939 66374951 HSF2_MA0770.1 6.029948739954940 + +chr1 66758506 66758518 HSF2_MA0770.1 7.834163763191365 + +chr1 67736392 67736404 HSF2_MA0770.1 5.967568971404657 - +chr1 71054001 71054013 HSF2_MA0770.1 6.367562343777994 + +chr1 74733355 74733367 HSF2_MA0770.1 5.929482943520583 - +chr1 75937734 75937746 HSF2_MA0770.1 5.447872097565499 - +chr1 75937739 75937751 HSF2_MA0770.1 9.168196754440094 + +chr1 75985844 75985856 HSF2_MA0770.1 6.263416125765714 - +chr1 75985849 75985861 HSF2_MA0770.1 6.903252076638974 + +chr1 75986130 75986142 HSF2_MA0770.1 5.570198507003850 + +chr1 76425521 76425533 HSF2_MA0770.1 5.595081919792747 - +chr1 77672220 77672232 HSF2_MA0770.1 8.077771114997722 + +chr1 77978532 77978544 HSF2_MA0770.1 7.746338919181179 + +chr1 78004841 78004853 HSF2_MA0770.1 8.746926343686400 + +chr1 78004874 78004886 HSF2_MA0770.1 7.193346851359486 - +chr1 81801954 81801966 HSF2_MA0770.1 6.037811896093855 - +chr1 84078645 84078657 HSF2_MA0770.1 7.145768604921892 - +chr1 84078650 84078662 HSF2_MA0770.1 7.511969796690828 + +chr1 84598977 84598989 HSF2_MA0770.1 5.706634837098173 + +chr1 84945213 84945225 HSF2_MA0770.1 6.528882066934186 - +chr1 84996631 84996643 HSF2_MA0770.1 6.055889742702144 - +chr1 85335222 85335234 HSF2_MA0770.1 6.498480377744192 - +chr1 88868289 88868301 HSF2_MA0770.1 7.499799139627983 - +chr1 89022786 89022798 HSF2_MA0770.1 5.529394440249456 + +chr1 89693367 89693379 HSF2_MA0770.1 5.989397229982314 - +chr1 89693372 89693384 HSF2_MA0770.1 6.566097819662270 + +chr1 90509658 90509670 HSF2_MA0770.1 5.558066243002989 + +chr1 92537459 92537471 HSF2_MA0770.1 6.253356769180121 + +chr1 92951410 92951422 HSF2_MA0770.1 6.743890300615075 - +chr1 92951436 92951448 HSF2_MA0770.1 5.651937419852796 - +chr1 93346414 93346426 HSF2_MA0770.1 5.499548468614940 + +chr1 94962716 94962728 HSF2_MA0770.1 11.809884052310105 - +chr1 94962721 94962733 HSF2_MA0770.1 9.227591386887687 + +chr1 96515677 96515689 HSF2_MA0770.1 7.316423998246851 - +chr1 96515682 96515694 HSF2_MA0770.1 7.331144032615768 + +chr1 97138734 97138746 HSF2_MA0770.1 6.231538375959412 + +chr1 97462137 97462149 HSF2_MA0770.1 7.129746463311891 - +chr1 97864683 97864695 HSF2_MA0770.1 6.438430116713260 - +chr1 99219144 99219156 HSF2_MA0770.1 7.266080752016411 + +chr1 99752207 99752219 HSF2_MA0770.1 6.368256668051762 + +chr1 99766165 99766177 HSF2_MA0770.1 9.168196754440094 - +chr1 100895576 100895588 HSF2_MA0770.1 5.662944230878693 + +chr1 101199680 101199692 HSF2_MA0770.1 5.924583261393342 + +chr1 101309171 101309183 HSF2_MA0770.1 8.818792771315159 - +chr1 101410532 101410544 HSF2_MA0770.1 10.301119072313133 - +chr1 101410537 101410549 HSF2_MA0770.1 5.850140672214167 + +chr1 101410570 101410582 HSF2_MA0770.1 5.791376047564919 - +chr1 101436641 101436653 HSF2_MA0770.1 10.691784363391456 - +chr1 103326954 103326966 HSF2_MA0770.1 9.026210717177161 + +chr1 103525959 103525971 HSF2_MA0770.1 6.284651210130155 + +chr1 107460086 107460098 HSF2_MA0770.1 6.341181613190304 - +chr1 110787395 110787407 HSF2_MA0770.1 6.549732884746652 - +chr1 113390740 113390752 HSF2_MA0770.1 9.190341488284053 + +chr1 113812407 113812419 HSF2_MA0770.1 7.678903557131026 - +chr1 113859729 113859741 HSF2_MA0770.1 6.196081504998939 - +chr1 116139115 116139127 HSF2_MA0770.1 6.495428236290498 + +chr1 116515477 116515489 HSF2_MA0770.1 5.619676964701414 + +chr1 117929706 117929718 HSF2_MA0770.1 6.619723833625265 - +chr1 121458833 121458845 HSF2_MA0770.1 6.754482342921003 + +chr1 125179479 125179491 HSF2_MA0770.1 7.226319988254643 - diff --git a/demo/known_tfbs_chr1_hg38/HSF4_MA0771.1.bed b/demo/known_tfbs_chr1_hg38/HSF4_MA0771.1.bed new file mode 100644 index 0000000..256203a --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/HSF4_MA0771.1.bed @@ -0,0 +1,118 @@ +chr1 790247 790259 HSF4_MA0771.1 7.866746684274315 - +chr1 790517 790529 HSF4_MA0771.1 8.969618002242449 - +chr1 6393599 6393611 HSF4_MA0771.1 12.168173164213629 + +chr1 9910865 9910877 HSF4_MA0771.1 6.917371191992824 - +chr1 11908985 11908997 HSF4_MA0771.1 7.023423370583894 - +chr1 11934717 11934729 HSF4_MA0771.1 8.213191371796196 + +chr1 12040509 12040521 HSF4_MA0771.1 6.942947284153877 + +chr1 15231762 15231774 HSF4_MA0771.1 10.325498765618981 - +chr1 15524782 15524794 HSF4_MA0771.1 7.535507567460118 - +chr1 15835792 15835804 HSF4_MA0771.1 11.287484169427962 + +chr1 15848112 15848124 HSF4_MA0771.1 9.277864068467339 - +chr1 21176983 21176995 HSF4_MA0771.1 6.992875832061564 + +chr1 25032248 25032260 HSF4_MA0771.1 6.916611282582043 - +chr1 26865387 26865399 HSF4_MA0771.1 7.422520242208185 - +chr1 26921506 26921518 HSF4_MA0771.1 8.895126930431710 + +chr1 27234812 27234824 HSF4_MA0771.1 7.447267681213246 - +chr1 27659762 27659774 HSF4_MA0771.1 6.922734554176237 + +chr1 31549664 31549676 HSF4_MA0771.1 8.507128125416639 + +chr1 31789179 31789191 HSF4_MA0771.1 7.257170350079995 - +chr1 32650868 32650880 HSF4_MA0771.1 10.919904165840370 + +chr1 33127323 33127335 HSF4_MA0771.1 8.695463985400998 + +chr1 35193318 35193330 HSF4_MA0771.1 7.103601470425938 - +chr1 36386703 36386715 HSF4_MA0771.1 8.308552934399113 - +chr1 38474855 38474867 HSF4_MA0771.1 9.418750263490276 - +chr1 39196321 39196333 HSF4_MA0771.1 7.112139861806463 + +chr1 39598838 39598850 HSF4_MA0771.1 8.691127807872999 - +chr1 40385986 40385998 HSF4_MA0771.1 7.205053199340453 + +chr1 42682419 42682431 HSF4_MA0771.1 7.315857470255358 + +chr1 43650390 43650402 HSF4_MA0771.1 7.034155544920788 - +chr1 44213290 44213302 HSF4_MA0771.1 9.489533760394291 - +chr1 45011650 45011662 HSF4_MA0771.1 7.229798423593842 - +chr1 45750487 45750499 HSF4_MA0771.1 9.302042202631736 + +chr1 51569831 51569843 HSF4_MA0771.1 7.211938799128789 + +chr1 53890026 53890038 HSF4_MA0771.1 9.312252260417692 - +chr1 55288424 55288436 HSF4_MA0771.1 7.693665378841877 - +chr1 56045315 56045327 HSF4_MA0771.1 7.217716355846446 + +chr1 57547068 57547080 HSF4_MA0771.1 7.689607269011344 - +chr1 58546171 58546183 HSF4_MA0771.1 8.161188616026354 - +chr1 58815637 58815649 HSF4_MA0771.1 7.124432492880981 + +chr1 59007781 59007793 HSF4_MA0771.1 8.387153785620113 - +chr1 59007786 59007798 HSF4_MA0771.1 7.531740448317657 + +chr1 59020194 59020206 HSF4_MA0771.1 11.006623439395263 + +chr1 62160063 62160075 HSF4_MA0771.1 7.564622146693213 - +chr1 62160175 62160187 HSF4_MA0771.1 7.464938346595622 + +chr1 66335641 66335653 HSF4_MA0771.1 7.248853875489784 + +chr1 66396314 66396326 HSF4_MA0771.1 7.845297006063385 - +chr1 66446405 66446417 HSF4_MA0771.1 7.189212168658019 + +chr1 66758211 66758223 HSF4_MA0771.1 7.376801448389906 + +chr1 66758506 66758518 HSF4_MA0771.1 9.515194354508459 + +chr1 71080740 71080752 HSF4_MA0771.1 6.913689518369456 - +chr1 74733105 74733117 HSF4_MA0771.1 7.337885631477731 - +chr1 74733355 74733367 HSF4_MA0771.1 8.203411691971843 - +chr1 75786027 75786039 HSF4_MA0771.1 7.065857177583601 + +chr1 75937739 75937751 HSF4_MA0771.1 7.471909132250759 + +chr1 75986130 75986142 HSF4_MA0771.1 6.971661711357543 + +chr1 77672220 77672232 HSF4_MA0771.1 9.802635434644476 + +chr1 77780069 77780081 HSF4_MA0771.1 6.897376519232575 - +chr1 77978532 77978544 HSF4_MA0771.1 9.660396427505503 + +chr1 78004841 78004853 HSF4_MA0771.1 9.085958031732932 + +chr1 78656104 78656116 HSF4_MA0771.1 7.398833348619087 - +chr1 81801954 81801966 HSF4_MA0771.1 8.205183758468864 - +chr1 84152763 84152775 HSF4_MA0771.1 7.559528256512369 - +chr1 84862665 84862677 HSF4_MA0771.1 7.342168434309653 + +chr1 84996631 84996643 HSF4_MA0771.1 6.963013985479694 - +chr1 89041281 89041293 HSF4_MA0771.1 6.908263590876932 + +chr1 89065416 89065428 HSF4_MA0771.1 7.479011448461131 + +chr1 89670126 89670138 HSF4_MA0771.1 9.052892308164047 - +chr1 90509658 90509670 HSF4_MA0771.1 7.826635878393490 + +chr1 92584638 92584650 HSF4_MA0771.1 7.498320800292067 - +chr1 93345785 93345797 HSF4_MA0771.1 6.946011455919860 - +chr1 93346414 93346426 HSF4_MA0771.1 7.019725521437971 + +chr1 94962716 94962728 HSF4_MA0771.1 11.256495352714893 - +chr1 94962721 94962733 HSF4_MA0771.1 7.459046625448647 + +chr1 96515682 96515694 HSF4_MA0771.1 7.939580586152165 + +chr1 97462137 97462149 HSF4_MA0771.1 7.500138666821534 - +chr1 99180551 99180563 HSF4_MA0771.1 8.065286319669767 - +chr1 99752207 99752219 HSF4_MA0771.1 7.887125394518419 + +chr1 99766165 99766177 HSF4_MA0771.1 7.471909132250759 - +chr1 100895268 100895280 HSF4_MA0771.1 7.004839951085259 - +chr1 101309171 101309183 HSF4_MA0771.1 10.041936486230586 - +chr1 101410532 101410544 HSF4_MA0771.1 9.459223500820929 - +chr1 101410570 101410582 HSF4_MA0771.1 8.308552934399113 - +chr1 101436641 101436653 HSF4_MA0771.1 10.837309682274485 - +chr1 101444553 101444565 HSF4_MA0771.1 6.906420899007455 + +chr1 103326954 103326966 HSF4_MA0771.1 9.952500136059008 + +chr1 106727488 106727500 HSF4_MA0771.1 7.186853960028680 + +chr1 108551548 108551560 HSF4_MA0771.1 7.186571043898962 + +chr1 110787395 110787407 HSF4_MA0771.1 8.467324883654953 - +chr1 110873004 110873016 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125179479 125179491 HSF4_MA0771.1 8.739461834807486 - +chr1 125179827 125179839 HSF4_MA0771.1 8.969618002242449 + +chr1 125180295 125180307 HSF4_MA0771.1 8.969618002242449 + +chr1 125180864 125180876 HSF4_MA0771.1 7.311638241507460 + +chr1 125181628 125181640 HSF4_MA0771.1 8.969618002242449 + +chr1 125182926 125182938 HSF4_MA0771.1 8.969618002242449 + +chr1 125183383 125183395 HSF4_MA0771.1 8.969618002242449 + +chr1 125184001 125184013 HSF4_MA0771.1 8.969618002242449 + +chr1 143185074 143185086 HSF4_MA0771.1 8.969618002242449 - +chr1 143185810 143185822 HSF4_MA0771.1 7.311638241507460 - +chr1 143186379 143186391 HSF4_MA0771.1 8.969618002242449 - +chr1 143192127 143192139 HSF4_MA0771.1 7.311638241507460 - +chr1 143192686 143192698 HSF4_MA0771.1 8.969618002242449 - diff --git a/demo/known_tfbs_chr1_hg38/Hand1_Tcf3_MA0092.1.bed b/demo/known_tfbs_chr1_hg38/Hand1_Tcf3_MA0092.1.bed new file mode 100644 index 0000000..08fc2ed --- /dev/null +++ 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7.756044656083926 + +chr1 97461804 97461820 Hmx3_MA0898.1 10.336784496821286 + +chr1 97462104 97462120 Hmx3_MA0898.1 6.960663264359212 + +chr1 98871579 98871595 Hmx3_MA0898.1 8.165210592917951 + +chr1 99786934 99786950 Hmx3_MA0898.1 8.610697372095158 - +chr1 100047058 100047074 Hmx3_MA0898.1 7.652649083573166 - +chr1 100076900 100076916 Hmx3_MA0898.1 7.688286522742185 - +chr1 101291622 101291638 Hmx3_MA0898.1 7.179035721007260 - +chr1 101364420 101364436 Hmx3_MA0898.1 8.702431844512764 + +chr1 101410140 101410156 Hmx3_MA0898.1 7.394291588021003 - +chr1 104746557 104746573 Hmx3_MA0898.1 6.859531751531499 - +chr1 106727205 106727221 Hmx3_MA0898.1 7.052191099533188 - +chr1 106727209 106727225 Hmx3_MA0898.1 8.170865676622757 - +chr1 107016418 107016434 Hmx3_MA0898.1 7.933584482039612 - +chr1 107140346 107140362 Hmx3_MA0898.1 9.180496687103430 - +chr1 107451554 107451570 Hmx3_MA0898.1 6.978447427418631 - +chr1 107935235 107935251 Hmx3_MA0898.1 8.780589719328791 + +chr1 107936556 107936572 Hmx3_MA0898.1 9.040248639706100 - +chr1 107949694 107949710 Hmx3_MA0898.1 9.876348016682316 - +chr1 108200780 108200796 Hmx3_MA0898.1 8.146011920891247 + +chr1 108559748 108559764 Hmx3_MA0898.1 9.610518594690133 - +chr1 109816514 109816530 Hmx3_MA0898.1 7.209501643494534 + +chr1 112716021 112716037 Hmx3_MA0898.1 8.054146552640002 + +chr1 113031388 113031404 Hmx3_MA0898.1 8.621807871138991 + +chr1 113072898 113072914 Hmx3_MA0898.1 7.459913624279084 + +chr1 116556677 116556693 Hmx3_MA0898.1 7.028957776261567 + diff --git a/demo/known_tfbs_chr1_hg38/Hnf4a_MA0114.3.bed b/demo/known_tfbs_chr1_hg38/Hnf4a_MA0114.3.bed new file mode 100644 index 0000000..5cc2593 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/Hnf4a_MA0114.3.bed @@ -0,0 +1,234 @@ +chr1 1407704 1407719 Hnf4a_MA0114.3 5.372220959571567 - +chr1 2195241 2195256 Hnf4a_MA0114.3 4.222584586434599 + +chr1 2555925 2555940 Hnf4a_MA0114.3 3.551408776760521 + +chr1 2586894 2586909 Hnf4a_MA0114.3 2.193024365035531 - +chr1 2654358 2654373 Hnf4a_MA0114.3 1.342327265669227 - +chr1 3491660 3491675 Hnf4a_MA0114.3 4.644122740493999 - +chr1 3666646 3666661 Hnf4a_MA0114.3 6.120057583373585 - +chr1 3901228 3901243 Hnf4a_MA0114.3 1.346984012704664 + +chr1 6026231 6026246 Hnf4a_MA0114.3 4.217830252901862 + +chr1 6235404 6235419 Hnf4a_MA0114.3 3.064525863397618 - +chr1 6393724 6393739 Hnf4a_MA0114.3 2.448320454816848 - +chr1 6490828 6490843 Hnf4a_MA0114.3 8.547721987267858 + +chr1 6614066 6614081 Hnf4a_MA0114.3 5.049077657879964 - +chr1 7994469 7994484 Hnf4a_MA0114.3 3.010289864361653 - +chr1 8525838 8525853 Hnf4a_MA0114.3 1.378589264169102 - +chr1 8703174 8703189 Hnf4a_MA0114.3 1.628157173972173 + +chr1 8878337 8878352 Hnf4a_MA0114.3 3.608251448261459 - +chr1 9069620 9069635 Hnf4a_MA0114.3 2.066011869132053 - +chr1 9163770 9163785 Hnf4a_MA0114.3 4.956709698547897 + +chr1 9539794 9539809 Hnf4a_MA0114.3 1.816093286620834 - +chr1 9629696 9629711 Hnf4a_MA0114.3 2.443083107416821 + +chr1 9942748 9942763 Hnf4a_MA0114.3 9.666220906463167 + +chr1 10430399 10430414 Hnf4a_MA0114.3 3.085634768160304 - +chr1 10430753 10430768 Hnf4a_MA0114.3 1.459635221120890 - +chr1 10494938 10494953 Hnf4a_MA0114.3 2.373735500394875 - +chr1 10986206 10986221 Hnf4a_MA0114.3 1.854736127307752 + +chr1 11012826 11012841 Hnf4a_MA0114.3 3.154692951280435 - +chr1 11013010 11013025 Hnf4a_MA0114.3 1.785736262443846 - +chr1 11680967 11680982 Hnf4a_MA0114.3 1.798946159685249 - +chr1 11736465 11736480 Hnf4a_MA0114.3 1.141405200447939 + +chr1 11926579 11926594 Hnf4a_MA0114.3 3.965529404413345 + +chr1 11980332 11980347 Hnf4a_MA0114.3 2.382491436366484 + +chr1 12620171 12620186 Hnf4a_MA0114.3 3.027438955659437 + +chr1 15975657 15975672 Hnf4a_MA0114.3 1.189612274991524 + +chr1 16644359 16644374 Hnf4a_MA0114.3 7.236483824022194 - +chr1 17011711 17011726 Hnf4a_MA0114.3 2.469657651284179 - +chr1 19210385 19210400 Hnf4a_MA0114.3 3.255887240847283 - +chr1 19312311 19312326 Hnf4a_MA0114.3 1.893798358798760 - +chr1 19477585 19477600 Hnf4a_MA0114.3 2.241051895185199 + +chr1 22025819 22025834 Hnf4a_MA0114.3 3.092117789045570 - +chr1 22451709 22451724 Hnf4a_MA0114.3 3.200496818157304 + +chr1 23368858 23368873 Hnf4a_MA0114.3 5.273191332115656 - +chr1 24391869 24391884 Hnf4a_MA0114.3 3.584187431288737 - +chr1 24392363 24392378 Hnf4a_MA0114.3 2.974194023126505 - +chr1 24392386 24392401 Hnf4a_MA0114.3 6.489568407388719 - +chr1 24745137 24745152 Hnf4a_MA0114.3 1.194830132859614 - +chr1 25338081 25338096 Hnf4a_MA0114.3 2.218950143572218 + +chr1 25430998 25431013 Hnf4a_MA0114.3 6.232479853622395 + +chr1 25819592 25819607 Hnf4a_MA0114.3 1.830621899346541 - +chr1 26787768 26787783 Hnf4a_MA0114.3 2.546930357199752 + +chr1 26889956 26889971 Hnf4a_MA0114.3 1.209526995639108 + +chr1 27490394 27490409 Hnf4a_MA0114.3 1.252663789146467 + +chr1 27773122 27773137 Hnf4a_MA0114.3 3.605149580242292 - +chr1 28370219 28370234 Hnf4a_MA0114.3 12.179686640907331 + +chr1 28518918 28518933 Hnf4a_MA0114.3 4.706915255077613 - +chr1 28648429 28648444 Hnf4a_MA0114.3 4.947261035870191 + +chr1 28669469 28669484 Hnf4a_MA0114.3 6.729971090180108 + +chr1 29182183 29182198 Hnf4a_MA0114.3 3.795080979101004 - +chr1 30719269 30719284 Hnf4a_MA0114.3 1.777198807674823 + +chr1 31296580 31296595 Hnf4a_MA0114.3 3.806148901212327 + +chr1 32013784 32013799 Hnf4a_MA0114.3 4.810683881010114 - +chr1 32335894 32335909 Hnf4a_MA0114.3 1.359872548918173 + +chr1 32351528 32351543 Hnf4a_MA0114.3 3.571929527355334 - +chr1 32394442 32394457 Hnf4a_MA0114.3 2.048590978708581 - +chr1 32650568 32650583 Hnf4a_MA0114.3 6.547799612717123 - +chr1 32650600 32650615 Hnf4a_MA0114.3 3.323974240675032 - +chr1 32981030 32981045 Hnf4a_MA0114.3 11.952038508258985 - +chr1 33350434 33350449 Hnf4a_MA0114.3 3.208911286272208 + +chr1 34360909 34360924 Hnf4a_MA0114.3 3.290802956989549 - +chr1 34859762 34859777 Hnf4a_MA0114.3 3.077303182087579 - +chr1 35506433 35506448 Hnf4a_MA0114.3 1.496030348972707 + +chr1 36224441 36224456 Hnf4a_MA0114.3 3.265687942880167 + +chr1 36386059 36386074 Hnf4a_MA0114.3 7.309488676947304 + +chr1 36386242 36386257 Hnf4a_MA0114.3 4.333377820668895 + +chr1 37474757 37474772 Hnf4a_MA0114.3 1.494843400445494 + +chr1 37595845 37595860 Hnf4a_MA0114.3 2.345242405068635 + +chr1 37931549 37931564 Hnf4a_MA0114.3 4.672177755718894 - +chr1 38475327 38475342 Hnf4a_MA0114.3 3.764823431903673 + +chr1 40186588 40186603 Hnf4a_MA0114.3 3.954193447393118 - +chr1 40665672 40665687 Hnf4a_MA0114.3 6.585843856953390 + +chr1 42456238 42456253 Hnf4a_MA0114.3 2.391595987095139 + +chr1 42924514 42924529 Hnf4a_MA0114.3 4.758642298960369 - +chr1 42931390 42931405 Hnf4a_MA0114.3 3.657131104915946 + +chr1 43991821 43991836 Hnf4a_MA0114.3 4.750003172958596 - +chr1 44213711 44213726 Hnf4a_MA0114.3 4.238548552447621 - +chr1 44355263 44355278 Hnf4a_MA0114.3 7.241649067163083 - +chr1 44631922 44631937 Hnf4a_MA0114.3 8.580726444887400 - +chr1 44721386 44721401 Hnf4a_MA0114.3 1.896605599295804 + +chr1 45012344 45012359 Hnf4a_MA0114.3 1.514824332837992 - 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+ +chr1 63368067 63368082 Hnf4a_MA0114.3 2.687142139517205 + +chr1 65068211 65068226 Hnf4a_MA0114.3 2.223825267530696 + +chr1 65148072 65148087 Hnf4a_MA0114.3 2.750839092888865 - +chr1 65148485 65148500 Hnf4a_MA0114.3 3.558038187734053 - +chr1 65420180 65420195 Hnf4a_MA0114.3 2.539485042989885 + +chr1 65420578 65420593 Hnf4a_MA0114.3 2.919888679669432 + +chr1 66247486 66247501 Hnf4a_MA0114.3 7.642566199367275 + +chr1 66445607 66445622 Hnf4a_MA0114.3 2.923966018835273 - +chr1 67053724 67053739 Hnf4a_MA0114.3 5.265724060674022 + +chr1 67171927 67171942 Hnf4a_MA0114.3 10.275725536705449 - +chr1 67685076 67685091 Hnf4a_MA0114.3 2.556248234192717 + +chr1 67686720 67686735 Hnf4a_MA0114.3 2.661231957765807 - +chr1 67766288 67766303 Hnf4a_MA0114.3 1.638767534637406 + +chr1 69382667 69382682 Hnf4a_MA0114.3 5.976945828225966 + +chr1 69737893 69737908 Hnf4a_MA0114.3 6.729565569514916 - +chr1 70205539 70205554 Hnf4a_MA0114.3 5.117269641592806 + +chr1 70504618 70504633 Hnf4a_MA0114.3 9.253370483964495 + +chr1 70517740 70517755 Hnf4a_MA0114.3 1.829673593838577 + +chr1 71080553 71080568 Hnf4a_MA0114.3 1.551433479297272 + +chr1 74674632 74674647 Hnf4a_MA0114.3 1.839377381006182 + +chr1 74674768 74674783 Hnf4a_MA0114.3 1.287618329035545 - +chr1 75339144 75339159 Hnf4a_MA0114.3 1.566685157157448 - +chr1 75786068 75786083 Hnf4a_MA0114.3 2.373002593613953 - +chr1 76074481 76074496 Hnf4a_MA0114.3 5.183218366642272 - +chr1 77672579 77672594 Hnf4a_MA0114.3 2.378110241818914 + +chr1 78004285 78004300 Hnf4a_MA0114.3 2.979459920330444 - +chr1 79193509 79193524 Hnf4a_MA0114.3 3.125981779784492 + +chr1 79472520 79472535 Hnf4a_MA0114.3 1.194458746143390 + +chr1 79695239 79695254 Hnf4a_MA0114.3 5.864351079211376 + +chr1 80639591 80639606 Hnf4a_MA0114.3 3.399927898746891 - +chr1 82152836 82152851 Hnf4a_MA0114.3 3.981348670757346 - +chr1 83406112 83406127 Hnf4a_MA0114.3 10.102090408563974 + +chr1 83501377 83501392 Hnf4a_MA0114.3 2.351219238318659 - +chr1 84506189 84506204 Hnf4a_MA0114.3 2.769377434014410 - +chr1 84944927 84944942 Hnf4a_MA0114.3 5.328481012141170 + +chr1 85027798 85027813 Hnf4a_MA0114.3 4.555303257234310 + +chr1 85048936 85048951 Hnf4a_MA0114.3 4.046662991034244 - +chr1 85576784 85576799 Hnf4a_MA0114.3 6.980907582456823 - +chr1 86616926 86616941 Hnf4a_MA0114.3 2.318556234933696 + +chr1 86756045 86756060 Hnf4a_MA0114.3 8.179025033587290 - +chr1 87813310 87813325 Hnf4a_MA0114.3 2.531613584440704 + +chr1 88684555 88684570 Hnf4a_MA0114.3 4.279314967136971 + +chr1 88993139 88993154 Hnf4a_MA0114.3 5.124359261048680 - +chr1 89198883 89198898 Hnf4a_MA0114.3 3.041307330944946 + +chr1 89821158 89821173 Hnf4a_MA0114.3 2.750295493462573 + +chr1 90509414 90509429 Hnf4a_MA0114.3 3.338928977131998 + +chr1 91572236 91572251 Hnf4a_MA0114.3 4.024435688074118 + +chr1 92537165 92537180 Hnf4a_MA0114.3 6.152838108850611 - +chr1 93615714 93615729 Hnf4a_MA0114.3 1.343814895185383 + +chr1 93704250 93704265 Hnf4a_MA0114.3 3.542709704609266 + +chr1 93708197 93708212 Hnf4a_MA0114.3 3.414188211894490 - +chr1 94037560 94037575 Hnf4a_MA0114.3 1.524036468732210 + +chr1 94418293 94418308 Hnf4a_MA0114.3 8.069940521066812 + +chr1 95072940 95072955 Hnf4a_MA0114.3 1.746443081673596 + +chr1 97920867 97920882 Hnf4a_MA0114.3 1.649417829730699 + +chr1 97921220 97921235 Hnf4a_MA0114.3 3.570729529050194 - +chr1 98662130 98662145 Hnf4a_MA0114.3 10.338910702889777 - +chr1 99752058 99752073 Hnf4a_MA0114.3 1.872742450165505 - +chr1 99752075 99752090 Hnf4a_MA0114.3 1.423356000730355 - +chr1 99759089 99759104 Hnf4a_MA0114.3 1.463231361590933 - +chr1 99969681 99969696 Hnf4a_MA0114.3 10.533021996032863 - +chr1 100351778 100351793 Hnf4a_MA0114.3 6.509785373430446 + +chr1 100352618 100352633 Hnf4a_MA0114.3 5.711356740696608 - +chr1 101137208 101137223 Hnf4a_MA0114.3 7.105732230746550 - +chr1 101235899 101235914 Hnf4a_MA0114.3 1.780170041226764 + +chr1 101247646 101247661 Hnf4a_MA0114.3 2.249092534905814 - +chr1 101258132 101258147 Hnf4a_MA0114.3 2.417625271958284 + +chr1 101407754 101407769 Hnf4a_MA0114.3 3.221867311723564 + +chr1 101408186 101408201 Hnf4a_MA0114.3 4.071157884367742 + +chr1 102434450 102434465 Hnf4a_MA0114.3 5.595137130174397 + +chr1 104467907 104467922 Hnf4a_MA0114.3 1.601178395647572 + +chr1 106073237 106073252 Hnf4a_MA0114.3 2.730645606672614 - +chr1 107459739 107459754 Hnf4a_MA0114.3 4.288660789527189 - +chr1 107950170 107950185 Hnf4a_MA0114.3 1.450116311781249 + +chr1 108559939 108559954 Hnf4a_MA0114.3 5.440162736750271 + +chr1 108560458 108560473 Hnf4a_MA0114.3 7.035958177440319 - +chr1 108692756 108692771 Hnf4a_MA0114.3 3.211623233370582 - +chr1 109075847 109075862 Hnf4a_MA0114.3 2.078269827509734 - +chr1 109100361 109100376 Hnf4a_MA0114.3 6.215906941097563 - +chr1 109426775 109426790 Hnf4a_MA0114.3 6.880088692458541 - +chr1 109620783 109620798 Hnf4a_MA0114.3 5.146118254483648 - +chr1 109656107 109656122 Hnf4a_MA0114.3 5.343657247203849 - +chr1 110034770 110034785 Hnf4a_MA0114.3 6.069494116288629 + +chr1 111204492 111204507 Hnf4a_MA0114.3 1.248886401711302 - +chr1 111508105 111508120 Hnf4a_MA0114.3 5.692888327958540 + +chr1 111619692 111619707 Hnf4a_MA0114.3 2.453651176604895 + +chr1 113072945 113072960 Hnf4a_MA0114.3 10.931163275225536 - +chr1 113929037 113929052 Hnf4a_MA0114.3 6.473808977105129 + +chr1 114511896 114511911 Hnf4a_MA0114.3 1.824069349021220 + +chr1 115642206 115642221 Hnf4a_MA0114.3 11.918055401084827 - +chr1 116168745 116168760 Hnf4a_MA0114.3 1.712658087338815 - +chr1 116597063 116597078 Hnf4a_MA0114.3 7.741754273080778 + +chr1 116737882 116737897 Hnf4a_MA0114.3 6.591735274843527 - +chr1 116827535 116827550 Hnf4a_MA0114.3 1.364773046087675 - +chr1 117929557 117929572 Hnf4a_MA0114.3 4.370189044911140 + +chr1 118136778 118136793 Hnf4a_MA0114.3 1.385111989059440 + +chr1 119139864 119139879 Hnf4a_MA0114.3 1.216918393478439 + +chr1 119266611 119266626 Hnf4a_MA0114.3 1.182838266124262 - +chr1 120176250 120176265 Hnf4a_MA0114.3 2.495485268157353 + +chr1 120415583 120415598 Hnf4a_MA0114.3 4.813263111330526 - +chr1 144461091 144461106 Hnf4a_MA0114.3 4.813263111330526 + +chr1 145886025 145886040 Hnf4a_MA0114.3 2.571931910984450 - +chr1 146037808 146037823 Hnf4a_MA0114.3 3.009485389148728 - +chr1 149927702 149927717 Hnf4a_MA0114.3 2.359591237366413 - +chr1 150010074 150010089 Hnf4a_MA0114.3 5.880089657570391 - +chr1 150611821 150611836 Hnf4a_MA0114.3 1.479274314773624 - +chr1 150765914 150765929 Hnf4a_MA0114.3 2.522701211119172 + +chr1 151008471 151008486 Hnf4a_MA0114.3 2.316893643844386 + +chr1 151070793 151070808 Hnf4a_MA0114.3 1.980281483372273 + +chr1 151282204 151282219 Hnf4a_MA0114.3 5.132830796417825 + +chr1 151347474 151347489 Hnf4a_MA0114.3 1.845822584607327 + +chr1 153599089 153599104 Hnf4a_MA0114.3 4.522728625466412 + +chr1 153671736 153671751 Hnf4a_MA0114.3 1.975886700104430 - +chr1 153742663 153742678 Hnf4a_MA0114.3 1.369769155856688 + +chr1 154182618 154182633 Hnf4a_MA0114.3 4.129201205391929 + +chr1 155136091 155136106 Hnf4a_MA0114.3 2.804879680774154 + +chr1 155308671 155308686 Hnf4a_MA0114.3 1.743109853826743 - +chr1 155946316 155946331 Hnf4a_MA0114.3 1.767594801885535 - +chr1 156054900 156054915 Hnf4a_MA0114.3 1.385420156729765 - +chr1 156114845 156114860 Hnf4a_MA0114.3 1.648357698444212 - +chr1 156740833 156740848 Hnf4a_MA0114.3 1.923617789240604 + +chr1 159012911 159012926 Hnf4a_MA0114.3 3.781898879206897 - +chr1 159925571 159925586 Hnf4a_MA0114.3 2.533671186108989 + +chr1 160098780 160098795 Hnf4a_MA0114.3 1.563971874887424 - +chr1 160790096 160790111 Hnf4a_MA0114.3 5.783754951048134 + +chr1 160790109 160790124 Hnf4a_MA0114.3 13.216640386199906 + +chr1 161166620 161166635 Hnf4a_MA0114.3 2.289877504748098 - +chr1 161726519 161726534 Hnf4a_MA0114.3 1.186765102215679 - diff --git a/demo/known_tfbs_chr1_hg38/Hoxa11_MA0911.1.bed b/demo/known_tfbs_chr1_hg38/Hoxa11_MA0911.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/Hoxa9_MA0594.1.bed b/demo/known_tfbs_chr1_hg38/Hoxa9_MA0594.1.bed new file mode 100644 index 0000000..b3a5be3 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/Hoxa9_MA0594.1.bed @@ -0,0 +1,117 @@ +chr1 1505131 1505141 Hoxa9_MA0594.1 7.910180875514918 - +chr1 8526030 8526040 Hoxa9_MA0594.1 9.396700376022075 + +chr1 12435984 12435994 Hoxa9_MA0594.1 8.436236091649091 - +chr1 15617025 15617035 Hoxa9_MA0594.1 7.029014423576196 - +chr1 15975456 15975466 Hoxa9_MA0594.1 8.268180193041619 + +chr1 16420911 16420921 Hoxa9_MA0594.1 8.480090883581786 + +chr1 18927773 18927783 Hoxa9_MA0594.1 7.182060268305596 - +chr1 21783083 21783093 Hoxa9_MA0594.1 7.444582743414516 + +chr1 23909199 23909209 Hoxa9_MA0594.1 7.646130099650664 + +chr1 24392412 24392422 Hoxa9_MA0594.1 8.492741979382460 - +chr1 25905924 25905934 Hoxa9_MA0594.1 7.588346029558325 + +chr1 26035827 26035837 Hoxa9_MA0594.1 7.256805378176193 - +chr1 31065290 31065300 Hoxa9_MA0594.1 7.437627643523804 + +chr1 31645056 31645066 Hoxa9_MA0594.1 8.987138153705795 - 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7.275616822953272 - +chr1 58997121 58997131 Hoxa9_MA0594.1 9.083289495402889 - +chr1 61453346 61453356 Hoxa9_MA0594.1 7.779660630793989 + +chr1 62160125 62160135 Hoxa9_MA0594.1 7.194888063222153 + +chr1 62783859 62783869 Hoxa9_MA0594.1 7.433609140958988 - +chr1 62810604 62810614 Hoxa9_MA0594.1 8.436236091649089 + +chr1 63368211 63368221 Hoxa9_MA0594.1 7.194888063222153 - +chr1 64172713 64172723 Hoxa9_MA0594.1 8.253188148090313 - +chr1 64470097 64470107 Hoxa9_MA0594.1 9.541815476490966 + +chr1 65067739 65067749 Hoxa9_MA0594.1 9.136268396445978 - +chr1 65687763 65687773 Hoxa9_MA0594.1 7.426598734080029 + +chr1 66247735 66247745 Hoxa9_MA0594.1 7.646130099650664 + +chr1 66365185 66365195 Hoxa9_MA0594.1 7.568821607026710 + +chr1 66365208 66365218 Hoxa9_MA0594.1 8.786321778624714 - +chr1 67215041 67215051 Hoxa9_MA0594.1 8.230970737057564 + +chr1 68058056 68058066 Hoxa9_MA0594.1 7.782380725616838 + +chr1 70504743 70504753 Hoxa9_MA0594.1 6.975289991446709 - +chr1 70685618 70685628 Hoxa9_MA0594.1 6.989004296836896 - +chr1 74653135 74653145 Hoxa9_MA0594.1 7.191511349444972 - +chr1 74732768 74732778 Hoxa9_MA0594.1 9.541815476490966 - +chr1 74733598 74733608 Hoxa9_MA0594.1 7.615327142931015 + +chr1 74734048 74734058 Hoxa9_MA0594.1 8.523919951270923 - +chr1 74734070 74734080 Hoxa9_MA0594.1 10.788058577561220 + +chr1 74767939 74767949 Hoxa9_MA0594.1 7.442593099555700 + +chr1 75233224 75233234 Hoxa9_MA0594.1 8.012752732366828 - +chr1 75784714 75784724 Hoxa9_MA0594.1 8.341716934502621 - +chr1 76294797 76294807 Hoxa9_MA0594.1 7.271180171466558 - +chr1 77219830 77219840 Hoxa9_MA0594.1 7.995542067844308 - +chr1 77770813 77770823 Hoxa9_MA0594.1 9.552725049264122 + +chr1 78004434 78004444 Hoxa9_MA0594.1 7.058178819876218 - +chr1 78004464 78004474 Hoxa9_MA0594.1 7.695337249530801 + +chr1 78650018 78650028 Hoxa9_MA0594.1 7.113861572242821 - +chr1 78854970 78854980 Hoxa9_MA0594.1 7.444582743414518 - +chr1 79695119 79695129 Hoxa9_MA0594.1 7.415701601116218 - +chr1 79695360 79695370 Hoxa9_MA0594.1 9.120129398696349 + +chr1 79742020 79742030 Hoxa9_MA0594.1 7.792789342121219 + +chr1 80656101 80656111 Hoxa9_MA0594.1 8.310758609043454 - +chr1 81548123 81548133 Hoxa9_MA0594.1 7.695337249530801 - +chr1 82979697 82979707 Hoxa9_MA0594.1 8.160894669155009 - +chr1 82979876 82979886 Hoxa9_MA0594.1 8.785648059842735 + +chr1 83406105 83406115 Hoxa9_MA0594.1 8.179331098763274 - +chr1 83501370 83501380 Hoxa9_MA0594.1 7.174767353578821 - +chr1 84479892 84479902 Hoxa9_MA0594.1 8.054259481595768 + +chr1 84599113 84599123 Hoxa9_MA0594.1 8.987138153705795 - +chr1 84854553 84854563 Hoxa9_MA0594.1 9.757990403855647 + +chr1 85027690 85027700 Hoxa9_MA0594.1 7.537344931525086 - +chr1 86774174 86774184 Hoxa9_MA0594.1 8.650468929021194 - +chr1 87588135 87588145 Hoxa9_MA0594.1 6.968733275114358 - +chr1 87588139 87588149 Hoxa9_MA0594.1 7.615327142931015 - +chr1 87813270 87813280 Hoxa9_MA0594.1 7.697019533287447 + +chr1 88401351 88401361 Hoxa9_MA0594.1 8.565107736691804 + +chr1 88868363 88868373 Hoxa9_MA0594.1 8.278917492425354 - +chr1 89694227 89694237 Hoxa9_MA0594.1 8.242450848706579 + +chr1 91886351 91886361 Hoxa9_MA0594.1 7.412830051418240 - +chr1 92537104 92537114 Hoxa9_MA0594.1 7.525311503145636 + +chr1 92538279 92538289 Hoxa9_MA0594.1 7.543092262691673 - +chr1 92538299 92538309 Hoxa9_MA0594.1 9.209805137906979 + +chr1 92538520 92538530 Hoxa9_MA0594.1 8.987138153705795 + +chr1 93346694 93346704 Hoxa9_MA0594.1 6.975288627816453 + +chr1 93591665 93591675 Hoxa9_MA0594.1 9.458925284431203 - +chr1 93615777 93615787 Hoxa9_MA0594.1 10.677312380116163 + +chr1 96417031 96417041 Hoxa9_MA0594.1 10.677312380116163 + +chr1 96955193 96955203 Hoxa9_MA0594.1 8.393399706549992 + +chr1 97864557 97864567 Hoxa9_MA0594.1 8.189471947663492 + +chr1 99084741 99084751 Hoxa9_MA0594.1 8.972543297957831 + +chr1 99752337 99752347 Hoxa9_MA0594.1 7.323128872446067 - +chr1 100895389 100895399 Hoxa9_MA0594.1 8.904249325276286 - +chr1 101380028 101380038 Hoxa9_MA0594.1 7.408325625690999 + +chr1 101410146 101410156 Hoxa9_MA0594.1 7.807487377775301 - +chr1 101436141 101436151 Hoxa9_MA0594.1 7.662269097400291 + +chr1 106073006 106073016 Hoxa9_MA0594.1 6.968733275114358 - +chr1 106727145 106727155 Hoxa9_MA0594.1 7.560768907321274 + +chr1 107010972 107010982 Hoxa9_MA0594.1 7.523410597899529 + +chr1 107964613 107964623 Hoxa9_MA0594.1 9.120129398696349 - +chr1 111222549 111222559 Hoxa9_MA0594.1 8.904247961646028 - +chr1 112955586 112955596 Hoxa9_MA0594.1 7.697019533287447 + +chr1 116596975 116596985 Hoxa9_MA0594.1 8.759381955730362 + +chr1 119139933 119139943 Hoxa9_MA0594.1 7.202198974310549 - +chr1 119318817 119318827 Hoxa9_MA0594.1 7.573420003121946 + +chr1 120534933 120534943 Hoxa9_MA0594.1 8.153601754428234 + +chr1 143253686 143253696 Hoxa9_MA0594.1 7.267077121415613 - +chr1 146037935 146037945 Hoxa9_MA0594.1 8.480092247212042 - +chr1 150067334 150067344 Hoxa9_MA0594.1 7.523410597899529 - +chr1 151156992 151157002 Hoxa9_MA0594.1 7.238112019336048 - +chr1 151281655 151281665 Hoxa9_MA0594.1 8.306647599157635 + +chr1 161166333 161166343 Hoxa9_MA0594.1 7.498674893251350 - +chr1 165754106 165754116 Hoxa9_MA0594.1 7.529965950601625 - diff --git a/demo/known_tfbs_chr1_hg38/Hoxb5_MA0904.1.bed b/demo/known_tfbs_chr1_hg38/Hoxb5_MA0904.1.bed new file mode 100644 index 0000000..afae2e5 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/Hoxb5_MA0904.1.bed @@ -0,0 +1,117 @@ +chr1 1778932 1778947 Hoxb5_MA0904.1 8.619913361186754 - +chr1 8097723 8097738 Hoxb5_MA0904.1 8.458200145137143 + +chr1 12079308 12079323 Hoxb5_MA0904.1 7.605165271752902 - +chr1 12435843 12435858 Hoxb5_MA0904.1 7.623514654577169 + +chr1 14600115 14600130 Hoxb5_MA0904.1 7.617152354791898 - +chr1 21791734 21791749 Hoxb5_MA0904.1 8.447673571988178 - +chr1 21791736 21791751 Hoxb5_MA0904.1 7.974571691079738 + +chr1 27659394 27659409 Hoxb5_MA0904.1 8.181984009945699 + +chr1 28552717 28552732 Hoxb5_MA0904.1 7.824257690844053 - +chr1 28648864 28648879 Hoxb5_MA0904.1 8.208320181539460 - +chr1 39196407 39196422 Hoxb5_MA0904.1 7.361098235029427 - +chr1 41868583 41868598 Hoxb5_MA0904.1 7.343589276737683 + +chr1 41955704 41955719 Hoxb5_MA0904.1 7.389721928311329 - +chr1 44730655 44730670 Hoxb5_MA0904.1 7.213812146127212 - +chr1 46604509 46604524 Hoxb5_MA0904.1 8.304240142209458 - +chr1 50873580 50873595 Hoxb5_MA0904.1 7.819804469947186 + +chr1 51234892 51234907 Hoxb5_MA0904.1 9.135165184924091 - +chr1 51285472 51285487 Hoxb5_MA0904.1 7.310648787327763 - +chr1 51285474 51285489 Hoxb5_MA0904.1 8.326803539032852 + +chr1 53327435 53327450 Hoxb5_MA0904.1 7.866810818904265 - +chr1 53890196 53890211 Hoxb5_MA0904.1 8.901563257262650 - +chr1 56579687 56579702 Hoxb5_MA0904.1 7.276393813745242 - +chr1 57546917 57546932 Hoxb5_MA0904.1 8.304239817534846 - +chr1 58573426 58573441 Hoxb5_MA0904.1 8.095742677853083 + +chr1 58578354 58578369 Hoxb5_MA0904.1 8.516486734938063 + +chr1 61319139 61319154 Hoxb5_MA0904.1 8.632115087723200 + +chr1 63124967 63124982 Hoxb5_MA0904.1 7.658718506543380 + +chr1 63563658 63563673 Hoxb5_MA0904.1 7.728910722390771 - +chr1 64172065 64172080 Hoxb5_MA0904.1 8.411054085451379 - +chr1 64172067 64172082 Hoxb5_MA0904.1 8.102753478110083 + +chr1 65894955 65894970 Hoxb5_MA0904.1 8.626246424229189 - +chr1 66283023 66283038 Hoxb5_MA0904.1 9.089337007689815 + +chr1 66335864 66335879 Hoxb5_MA0904.1 7.343262233114135 - +chr1 66446277 66446292 Hoxb5_MA0904.1 7.629691550926364 + +chr1 68058072 68058087 Hoxb5_MA0904.1 9.722383676121595 - +chr1 69321069 69321084 Hoxb5_MA0904.1 7.296292891726635 - +chr1 70205005 70205020 Hoxb5_MA0904.1 8.893876593032093 - +chr1 72432987 72433002 Hoxb5_MA0904.1 8.660229290872000 + +chr1 74198637 74198652 Hoxb5_MA0904.1 8.024598570882686 - +chr1 74674572 74674587 Hoxb5_MA0904.1 8.618558388487873 - +chr1 74674853 74674868 Hoxb5_MA0904.1 8.762242588753278 - +chr1 74714668 74714683 Hoxb5_MA0904.1 8.017179040330131 - +chr1 74812258 74812273 Hoxb5_MA0904.1 7.683358112158199 + +chr1 74824820 74824835 Hoxb5_MA0904.1 7.477240135918787 + 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8.169313852651312 - +chr1 79260082 79260097 Hoxb5_MA0904.1 9.638017401875159 + +chr1 79519607 79519622 Hoxb5_MA0904.1 8.521394086920933 - +chr1 79519609 79519624 Hoxb5_MA0904.1 9.653453236227659 + +chr1 80640937 80640952 Hoxb5_MA0904.1 7.700482825997805 - +chr1 80656084 80656099 Hoxb5_MA0904.1 7.513502087937114 + +chr1 83501042 83501057 Hoxb5_MA0904.1 8.804198145199296 - +chr1 83501044 83501059 Hoxb5_MA0904.1 8.861638639494377 + +chr1 83508441 83508456 Hoxb5_MA0904.1 7.563899893258789 - +chr1 83508443 83508458 Hoxb5_MA0904.1 7.730162483282031 + +chr1 86015760 86015775 Hoxb5_MA0904.1 8.012177893388087 + +chr1 86617012 86617027 Hoxb5_MA0904.1 7.913427268410393 + +chr1 86755934 86755949 Hoxb5_MA0904.1 9.325163373660804 + +chr1 87052486 87052501 Hoxb5_MA0904.1 8.061893596273102 - +chr1 88701110 88701125 Hoxb5_MA0904.1 7.939043369748893 + +chr1 88868251 88868266 Hoxb5_MA0904.1 9.078408644506281 + +chr1 89612028 89612043 Hoxb5_MA0904.1 7.220706394394232 - +chr1 89612030 89612045 Hoxb5_MA0904.1 11.355027998418032 + +chr1 89719742 89719757 Hoxb5_MA0904.1 8.851927405174418 - +chr1 89843212 89843227 Hoxb5_MA0904.1 8.480467626213590 - +chr1 90510266 90510281 Hoxb5_MA0904.1 8.901563257262650 + +chr1 92537305 92537320 Hoxb5_MA0904.1 7.574805888858890 - +chr1 92563903 92563918 Hoxb5_MA0904.1 7.235252990649142 - +chr1 92563905 92563920 Hoxb5_MA0904.1 8.564872785140501 + +chr1 92563907 92563922 Hoxb5_MA0904.1 7.814669511123235 - +chr1 92563909 92563924 Hoxb5_MA0904.1 8.594827453143015 + +chr1 92563911 92563926 Hoxb5_MA0904.1 10.148174106970501 - +chr1 92563913 92563928 Hoxb5_MA0904.1 8.095836864754439 + +chr1 92584741 92584756 Hoxb5_MA0904.1 7.532700985978845 + +chr1 97138785 97138800 Hoxb5_MA0904.1 9.204388111235225 - +chr1 97158931 97158946 Hoxb5_MA0904.1 7.838456769832572 - +chr1 97163757 97163772 Hoxb5_MA0904.1 11.372078147692495 - +chr1 97461654 97461669 Hoxb5_MA0904.1 7.969301820654341 - +chr1 97462105 97462120 Hoxb5_MA0904.1 8.806617499210265 + +chr1 99180563 99180578 Hoxb5_MA0904.1 7.349459772915965 - +chr1 99766430 99766445 Hoxb5_MA0904.1 9.013383654570795 + +chr1 101380252 101380267 Hoxb5_MA0904.1 7.376024843030448 + +chr1 101407931 101407946 Hoxb5_MA0904.1 7.582946240177296 - +chr1 101438265 101438280 Hoxb5_MA0904.1 7.921668984666487 - +chr1 101438267 101438282 Hoxb5_MA0904.1 7.825217351622365 + +chr1 101567446 101567461 Hoxb5_MA0904.1 8.538117927420755 - +chr1 101567822 101567837 Hoxb5_MA0904.1 7.451381923096456 - +chr1 102174547 102174562 Hoxb5_MA0904.1 8.638657931167392 - +chr1 102241690 102241705 Hoxb5_MA0904.1 8.471923180042101 - +chr1 102241692 102241707 Hoxb5_MA0904.1 7.712882644537400 + +chr1 102242121 102242136 Hoxb5_MA0904.1 9.120473090433361 - +chr1 103515134 103515149 Hoxb5_MA0904.1 9.000231550255696 + +chr1 103517300 103517315 Hoxb5_MA0904.1 7.879979041431582 + +chr1 103958729 103958744 Hoxb5_MA0904.1 8.493895333684659 - +chr1 103958766 103958781 Hoxb5_MA0904.1 9.710586772671590 - +chr1 104593229 104593244 Hoxb5_MA0904.1 8.191959580084745 - +chr1 104593231 104593246 Hoxb5_MA0904.1 7.711444685633181 + +chr1 104746767 104746782 Hoxb5_MA0904.1 7.440838011663397 - +chr1 104746769 104746784 Hoxb5_MA0904.1 7.427592700605558 + +chr1 104987443 104987458 Hoxb5_MA0904.1 7.297151862270677 + +chr1 106727205 106727220 Hoxb5_MA0904.1 7.313895413233624 - +chr1 106727209 106727224 Hoxb5_MA0904.1 8.894016294176332 - diff --git a/demo/known_tfbs_chr1_hg38/Hoxc9_MA0485.1.bed b/demo/known_tfbs_chr1_hg38/Hoxc9_MA0485.1.bed new file mode 100644 index 0000000..e114ddd --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/Hoxc9_MA0485.1.bed @@ -0,0 +1,117 @@ +chr1 1505130 1505142 Hoxc9_MA0485.1 7.917202860486578 - +chr1 8526029 8526041 Hoxc9_MA0485.1 8.484473415708871 + +chr1 12435983 12435995 Hoxc9_MA0485.1 8.779683988777739 - +chr1 19209884 19209896 Hoxc9_MA0485.1 8.424985444474750 - +chr1 21783082 21783094 Hoxc9_MA0485.1 8.324460351010611 + +chr1 23980808 23980820 Hoxc9_MA0485.1 8.642484416009548 - +chr1 25550103 25550115 Hoxc9_MA0485.1 9.069991916755896 - +chr1 31549385 31549397 Hoxc9_MA0485.1 7.323876381307848 + +chr1 31644969 31644981 Hoxc9_MA0485.1 7.055795185918156 + +chr1 31645055 31645067 Hoxc9_MA0485.1 7.986536834995595 - +chr1 37692085 37692097 Hoxc9_MA0485.1 7.603576495741214 + +chr1 39196268 39196280 Hoxc9_MA0485.1 8.004180697457828 + +chr1 39598801 39598813 Hoxc9_MA0485.1 7.590473120812048 - +chr1 40385715 40385727 Hoxc9_MA0485.1 8.868248602505437 + +chr1 44721869 44721881 Hoxc9_MA0485.1 7.312532489839078 - +chr1 44819964 44819976 Hoxc9_MA0485.1 8.583730544836925 - +chr1 45687318 45687330 Hoxc9_MA0485.1 7.364971753667838 + +chr1 46063141 46063153 Hoxc9_MA0485.1 9.584784873038032 - +chr1 56045215 56045227 Hoxc9_MA0485.1 7.907235192491968 - +chr1 56330746 56330758 Hoxc9_MA0485.1 9.356526097875742 - +chr1 56526715 56526727 Hoxc9_MA0485.1 10.920456435527655 - +chr1 58573465 58573477 Hoxc9_MA0485.1 8.502387262945435 - +chr1 58997120 58997132 Hoxc9_MA0485.1 9.335398977901601 - +chr1 59697133 59697145 Hoxc9_MA0485.1 8.013988553909924 + +chr1 60978923 60978935 Hoxc9_MA0485.1 8.155757481239732 + +chr1 62160124 62160136 Hoxc9_MA0485.1 9.038595285039342 + +chr1 62783858 62783870 Hoxc9_MA0485.1 8.623775286522577 - +chr1 62810603 62810615 Hoxc9_MA0485.1 8.078706667706669 + +chr1 63368210 63368222 Hoxc9_MA0485.1 9.097617120865861 - +chr1 63523942 63523954 Hoxc9_MA0485.1 7.468022944551930 - +chr1 64172712 64172724 Hoxc9_MA0485.1 9.704139137240077 - +chr1 64223201 64223213 Hoxc9_MA0485.1 8.312844292555365 - +chr1 64470096 64470108 Hoxc9_MA0485.1 10.403097510391559 + +chr1 64956812 64956824 Hoxc9_MA0485.1 7.354335272553820 + +chr1 66247943 66247955 Hoxc9_MA0485.1 7.534736932052473 - +chr1 66365184 66365196 Hoxc9_MA0485.1 7.180821455598011 + +chr1 66365207 66365219 Hoxc9_MA0485.1 10.220963306214315 - +chr1 70411676 70411688 Hoxc9_MA0485.1 7.076904654230104 + +chr1 70504407 70504419 Hoxc9_MA0485.1 8.175833080597776 + +chr1 70685617 70685629 Hoxc9_MA0485.1 7.210674525706123 - +chr1 74653134 74653146 Hoxc9_MA0485.1 7.167220459994633 - +chr1 74714483 74714495 Hoxc9_MA0485.1 7.075284181218143 + +chr1 74732767 74732779 Hoxc9_MA0485.1 10.207325162662505 - +chr1 74733597 74733609 Hoxc9_MA0485.1 8.376346647846393 + +chr1 74734047 74734059 Hoxc9_MA0485.1 7.599713649632219 - +chr1 74734069 74734081 Hoxc9_MA0485.1 8.469302391061706 + +chr1 75233223 75233235 Hoxc9_MA0485.1 7.603986063790135 - +chr1 75339405 75339417 Hoxc9_MA0485.1 7.423743750770528 - +chr1 75784713 75784725 Hoxc9_MA0485.1 8.537545221413097 - +chr1 76294796 76294808 Hoxc9_MA0485.1 7.362312078753054 - +chr1 77770812 77770824 Hoxc9_MA0485.1 7.324686260881801 + +chr1 78004433 78004445 Hoxc9_MA0485.1 7.668161029211446 - +chr1 78004463 78004475 Hoxc9_MA0485.1 8.525583247398069 + +chr1 78650017 78650029 Hoxc9_MA0485.1 7.976066024244671 - +chr1 79695118 79695130 Hoxc9_MA0485.1 8.055188232536922 - +chr1 79695359 79695371 Hoxc9_MA0485.1 8.056562792525870 + +chr1 80656100 80656112 Hoxc9_MA0485.1 8.012012296012569 - 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7.229434842444213 - +chr1 99084740 99084752 Hoxc9_MA0485.1 7.788186048213255 + +chr1 99084755 99084767 Hoxc9_MA0485.1 7.448431781709969 + +chr1 101179043 101179055 Hoxc9_MA0485.1 7.366801444829546 + +chr1 101199157 101199169 Hoxc9_MA0485.1 7.762750007885447 - +chr1 101309507 101309519 Hoxc9_MA0485.1 8.547866088985812 + +chr1 101436297 101436309 Hoxc9_MA0485.1 7.610204915053153 + +chr1 104593712 104593724 Hoxc9_MA0485.1 8.570724417217463 - +chr1 106996131 106996143 Hoxc9_MA0485.1 7.979895171870299 + +chr1 106996375 106996387 Hoxc9_MA0485.1 7.226866382841282 + +chr1 106996394 106996406 Hoxc9_MA0485.1 7.016262345391623 - +chr1 107010971 107010983 Hoxc9_MA0485.1 8.284927510484078 + +chr1 107936198 107936210 Hoxc9_MA0485.1 7.746111098512039 + +chr1 107964612 107964624 Hoxc9_MA0485.1 7.531451284985528 - +chr1 111216131 111216143 Hoxc9_MA0485.1 7.401817707701253 + +chr1 111222206 111222218 Hoxc9_MA0485.1 8.815197733200321 - +chr1 111222548 111222560 Hoxc9_MA0485.1 7.952531917292192 - +chr1 112955585 112955597 Hoxc9_MA0485.1 7.374624131675861 + +chr1 113929360 113929372 Hoxc9_MA0485.1 7.268081159784195 + +chr1 114757982 114757994 Hoxc9_MA0485.1 8.709797178405765 + +chr1 116515268 116515280 Hoxc9_MA0485.1 7.152778359323285 + +chr1 119267397 119267409 Hoxc9_MA0485.1 7.308673738438603 - +chr1 119318816 119318828 Hoxc9_MA0485.1 7.975380035741413 + +chr1 119662123 119662135 Hoxc9_MA0485.1 8.825518600773036 - +chr1 120534932 120534944 Hoxc9_MA0485.1 7.511880248409960 + +chr1 120914412 120914424 Hoxc9_MA0485.1 7.115443672319947 - +chr1 143234024 143234036 Hoxc9_MA0485.1 7.733268760894653 - diff --git a/demo/known_tfbs_chr1_hg38/Hoxd3_MA0912.1.bed b/demo/known_tfbs_chr1_hg38/Hoxd3_MA0912.1.bed new file mode 100644 index 0000000..8ed89dd --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/Hoxd3_MA0912.1.bed @@ -0,0 +1,117 @@ +chr1 1778932 1778947 Hoxd3_MA0912.1 7.587519387198927 + +chr1 6026551 6026566 Hoxd3_MA0912.1 7.984057154339628 - +chr1 12435843 12435858 Hoxd3_MA0912.1 7.418620202159070 - +chr1 12449800 12449815 Hoxd3_MA0912.1 9.445650852159231 + +chr1 14600115 14600130 Hoxd3_MA0912.1 8.034099857730817 + +chr1 24392381 24392396 Hoxd3_MA0912.1 7.494526361249251 - +chr1 25247694 25247709 Hoxd3_MA0912.1 7.875016884711708 + +chr1 26306885 26306900 Hoxd3_MA0912.1 9.011013722082078 + +chr1 26472413 26472428 Hoxd3_MA0912.1 7.894136853659975 + +chr1 27659394 27659409 Hoxd3_MA0912.1 8.286571727575549 - +chr1 28199585 28199600 Hoxd3_MA0912.1 9.270265850870656 + +chr1 28552717 28552732 Hoxd3_MA0912.1 7.946180404517346 + +chr1 33461430 33461445 Hoxd3_MA0912.1 7.515115872412144 - +chr1 40692253 40692268 Hoxd3_MA0912.1 8.306829212606614 + +chr1 41003946 41003961 Hoxd3_MA0912.1 7.956615802707363 - +chr1 41868583 41868598 Hoxd3_MA0912.1 8.225219075875192 - +chr1 41955704 41955719 Hoxd3_MA0912.1 7.605536720716993 + +chr1 44730657 44730672 Hoxd3_MA0912.1 7.417515288056943 - +chr1 46604509 46604524 Hoxd3_MA0912.1 9.920915410514018 + +chr1 51234892 51234907 Hoxd3_MA0912.1 8.948904438393470 + +chr1 51285472 51285487 Hoxd3_MA0912.1 8.428796559705360 + +chr1 51285474 51285489 Hoxd3_MA0912.1 9.852186925244363 - +chr1 52843366 52843381 Hoxd3_MA0912.1 7.516782700789877 - +chr1 53327435 53327450 Hoxd3_MA0912.1 7.500507173721540 + +chr1 53890196 53890211 Hoxd3_MA0912.1 9.484028832769670 + +chr1 56045175 56045190 Hoxd3_MA0912.1 7.475375502447063 - +chr1 57546917 57546932 Hoxd3_MA0912.1 8.651804415199310 + +chr1 58573426 58573441 Hoxd3_MA0912.1 8.189066980617199 - +chr1 63563658 63563673 Hoxd3_MA0912.1 7.972100872852984 + +chr1 64172065 64172080 Hoxd3_MA0912.1 8.664123465768185 + +chr1 64172848 64172863 Hoxd3_MA0912.1 7.780282666193674 - +chr1 64223274 64223289 Hoxd3_MA0912.1 7.426905932684223 + +chr1 65894955 65894970 Hoxd3_MA0912.1 7.772336744514639 + +chr1 66350233 66350248 Hoxd3_MA0912.1 7.520845633793156 - +chr1 66397031 66397046 Hoxd3_MA0912.1 9.107158275243791 - +chr1 66445733 66445748 Hoxd3_MA0912.1 8.371653069106863 + +chr1 66446275 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197201940 IRF3_MA1418.1 12.574392050455657 + +chr1 197201926 197201946 IRF3_MA1418.1 6.138570659210179 + +chr1 197776582 197776602 IRF3_MA1418.1 4.982009767118424 + +chr1 198157907 198157927 IRF3_MA1418.1 4.917529488716768 + +chr1 198157908 198157928 IRF3_MA1418.1 3.050520709138920 + +chr1 198166168 198166188 IRF3_MA1418.1 3.415843893348725 - +chr1 198166345 198166365 IRF3_MA1418.1 3.390941714128255 - +chr1 198202691 198202711 IRF3_MA1418.1 2.349803299643106 + +chr1 198253588 198253608 IRF3_MA1418.1 3.837047349135811 + +chr1 198253593 198253613 IRF3_MA1418.1 1.303396089595078 + +chr1 198253954 198253974 IRF3_MA1418.1 4.147211586494654 - +chr1 198520348 198520368 IRF3_MA1418.1 4.731050484648648 + +chr1 198549901 198549921 IRF3_MA1418.1 8.797685891715954 + +chr1 198549947 198549967 IRF3_MA1418.1 2.541622276222782 + +chr1 198550210 198550230 IRF3_MA1418.1 5.080068548947739 - +chr1 198598490 198598510 IRF3_MA1418.1 1.572010403004997 + +chr1 198599338 198599358 IRF3_MA1418.1 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200653312 IRF3_MA1418.1 13.022934289332627 - +chr1 201170700 201170720 IRF3_MA1418.1 1.352952248277434 + +chr1 202889040 202889060 IRF3_MA1418.1 3.091080699796467 - +chr1 203007522 203007542 IRF3_MA1418.1 1.618013684950558 + +chr1 203289912 203289932 IRF3_MA1418.1 3.864556480738633 - +chr1 203289923 203289943 IRF3_MA1418.1 1.398966125164163 - +chr1 203626647 203626667 IRF3_MA1418.1 4.397495636778647 - +chr1 203626653 203626673 IRF3_MA1418.1 4.898508572510727 - +chr1 203754712 203754732 IRF3_MA1418.1 5.499251229654329 - +chr1 203765142 203765162 IRF3_MA1418.1 6.984239508346748 - +chr1 203861582 203861602 IRF3_MA1418.1 2.552874403081551 - +chr1 204411990 204412010 IRF3_MA1418.1 3.507769296366701 - +chr1 204453411 204453431 IRF3_MA1418.1 6.985697886281900 - +chr1 204506448 204506468 IRF3_MA1418.1 1.902222950215499 + +chr1 204516393 204516413 IRF3_MA1418.1 3.966681214091191 - +chr1 204578903 204578923 IRF3_MA1418.1 3.793589394127515 + +chr1 204578909 204578929 IRF3_MA1418.1 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220718087 IRF3_MA1418.1 3.733895798580626 + +chr1 220733174 220733194 IRF3_MA1418.1 1.902005504327446 - +chr1 220879734 220879754 IRF3_MA1418.1 4.492455016965057 + +chr1 221046348 221046368 IRF3_MA1418.1 4.477622070721634 + +chr1 221157212 221157232 IRF3_MA1418.1 4.401403773844937 + +chr1 221439734 221439754 IRF3_MA1418.1 3.691410459504176 - +chr1 221644047 221644067 IRF3_MA1418.1 5.451299546897713 - +chr1 221726525 221726545 IRF3_MA1418.1 2.591517595318596 + +chr1 221742089 221742109 IRF3_MA1418.1 1.622447235644396 - +chr1 221761426 221761446 IRF3_MA1418.1 3.182839938275857 - +chr1 221777912 221777932 IRF3_MA1418.1 1.523263811936852 - +chr1 221778025 221778045 IRF3_MA1418.1 2.978333786019952 + +chr1 221840455 221840475 IRF3_MA1418.1 5.406975012688964 + +chr1 221994302 221994322 IRF3_MA1418.1 3.069709997644226 + +chr1 222465993 222466013 IRF3_MA1418.1 10.699280743419113 + +chr1 222465999 222466019 IRF3_MA1418.1 5.091688216098161 + +chr1 222582272 222582292 IRF3_MA1418.1 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IRF9_MA0653.1 -1.095039772366347 + +chr1 221644048 221644062 IRF9_MA0653.1 -2.420491125328970 - +chr1 221726448 221726462 IRF9_MA0653.1 -3.374056563307142 + +chr1 221726530 221726544 IRF9_MA0653.1 -0.191248837964864 + +chr1 221742090 221742104 IRF9_MA0653.1 1.577991019344010 - +chr1 221761427 221761441 IRF9_MA0653.1 7.031395143644547 - +chr1 221778030 221778044 IRF9_MA0653.1 0.454827455755765 + +chr1 221840042 221840056 IRF9_MA0653.1 -3.665524422823062 + +chr1 221840220 221840234 IRF9_MA0653.1 7.755275421101400 - +chr1 221840460 221840474 IRF9_MA0653.1 -1.674355081053052 + +chr1 222465998 222466012 IRF9_MA0653.1 7.779049259373270 + +chr1 222583199 222583213 IRF9_MA0653.1 2.628874971361992 + +chr1 222583283 222583297 IRF9_MA0653.1 3.493927931894251 - +chr1 222589995 222590009 IRF9_MA0653.1 -2.803653523192217 - +chr1 222644320 222644334 IRF9_MA0653.1 -3.027355895702976 + +chr1 222655100 222655114 IRF9_MA0653.1 7.207846989999201 - +chr1 222711562 222711576 IRF9_MA0653.1 3.451270834849475 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b/demo/known_tfbs_chr1_hg38/ISX_MA0654.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/Id2_MA0617.1.bed b/demo/known_tfbs_chr1_hg38/Id2_MA0617.1.bed new file mode 100644 index 0000000..7507990 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/Id2_MA0617.1.bed @@ -0,0 +1,121 @@ +chr1 1232109 1232116 Id2_MA0617.1 8.606446291301237 + +chr1 1505198 1505205 Id2_MA0617.1 8.606446291301237 - +chr1 1505207 1505214 Id2_MA0617.1 9.116073532802586 - +chr1 1778506 1778513 Id2_MA0617.1 9.095922213373470 + +chr1 1909378 1909385 Id2_MA0617.1 8.606446291301237 + +chr1 2555744 2555751 Id2_MA0617.1 8.606446291301237 - +chr1 2653459 2653466 Id2_MA0617.1 9.701058475035612 + +chr1 2750415 2750422 Id2_MA0617.1 9.701058475035612 + +chr1 6199515 6199522 Id2_MA0617.1 9.095922213373470 - +chr1 6861564 6861571 Id2_MA0617.1 8.690457151052845 + +chr1 7783866 7783873 Id2_MA0617.1 8.606446291301237 - +chr1 8878326 8878333 Id2_MA0617.1 9.116073532802586 - +chr1 8879279 8879286 Id2_MA0617.1 9.095922213373470 - +chr1 9539438 9539445 Id2_MA0617.1 8.606446291301237 + +chr1 10472577 10472584 Id2_MA0617.1 9.116073532802586 + +chr1 10472626 10472633 Id2_MA0617.1 9.116073532802586 - +chr1 11736070 11736077 Id2_MA0617.1 8.606446291301237 - +chr1 11806170 11806177 Id2_MA0617.1 8.606446291301237 + +chr1 14924138 14924145 Id2_MA0617.1 8.606446291301237 + +chr1 15584661 15584668 Id2_MA0617.1 8.510937271140444 - +chr1 15603648 15603655 Id2_MA0617.1 8.690457151052845 + +chr1 15603699 15603706 Id2_MA0617.1 9.701058475035612 + +chr1 16440593 16440600 Id2_MA0617.1 8.510937271140444 - +chr1 18902946 18902953 Id2_MA0617.1 8.690457151052845 - +chr1 19251818 19251825 Id2_MA0617.1 9.095922213373470 + +chr1 22451803 22451810 Id2_MA0617.1 9.701058475035612 + +chr1 24848442 24848449 Id2_MA0617.1 9.095922213373470 + +chr1 25906463 25906470 Id2_MA0617.1 9.701058475035612 + +chr1 26432116 26432123 Id2_MA0617.1 9.095922213373470 + +chr1 26472399 26472406 Id2_MA0617.1 8.606446291301237 + 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JDP2_MA0655.1 9.291213667807769 + +chr1 8182575 8182583 JDP2_MA0655.1 9.334031143087570 - +chr1 8283376 8283384 JDP2_MA0655.1 6.205418108108824 + +chr1 8283376 8283384 JDP2_MA0655.1 6.548865146744033 - +chr1 8283385 8283393 JDP2_MA0655.1 6.414840191421797 + +chr1 8283385 8283393 JDP2_MA0655.1 6.429015733302008 - +chr1 8525677 8525685 JDP2_MA0655.1 7.216527974946336 + +chr1 8525677 8525685 JDP2_MA0655.1 7.285520727385874 - +chr1 8764241 8764249 JDP2_MA0655.1 6.336156536473588 + +chr1 9164059 9164067 JDP2_MA0655.1 6.575605699598729 - +chr1 12040723 12040731 JDP2_MA0655.1 7.892917804181980 + +chr1 12040723 12040731 JDP2_MA0655.1 6.876887453548461 - +chr1 12052168 12052176 JDP2_MA0655.1 11.748357357346878 + +chr1 12052168 12052176 JDP2_MA0655.1 10.732327006713358 - +chr1 12162011 12162019 JDP2_MA0655.1 10.732327006713358 + +chr1 12162011 12162019 JDP2_MA0655.1 11.748357357346880 - +chr1 12449676 12449684 JDP2_MA0655.1 7.430870542055317 + +chr1 15617514 15617522 JDP2_MA0655.1 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diff --git a/demo/known_tfbs_chr1_hg38/JUNB_MA0490.1.bed b/demo/known_tfbs_chr1_hg38/JUNB_MA0490.1.bed new file mode 100644 index 0000000..ad75dbd --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/JUNB_MA0490.1.bed @@ -0,0 +1,472 @@ +chr1 3666727 3666737 JUNB_MA0490.1 7.114701034381409 + +chr1 3677200 3677210 JUNB_MA0490.1 9.877109826747168 - +chr1 4267690 4267700 JUNB_MA0490.1 7.643239696600381 + +chr1 6027068 6027078 JUNB_MA0490.1 10.024978893306672 - +chr1 6603044 6603054 JUNB_MA0490.1 7.311205229043404 + +chr1 6603046 6603056 JUNB_MA0490.1 10.536041875645509 - +chr1 6784563 6784573 JUNB_MA0490.1 8.212628770937268 + +chr1 6784565 6784575 JUNB_MA0490.1 11.314687434220925 - +chr1 7994313 7994323 JUNB_MA0490.1 7.882432864652509 + +chr1 8097575 8097585 JUNB_MA0490.1 10.137214423383526 + +chr1 8097577 8097587 JUNB_MA0490.1 7.178558653435325 - +chr1 8097736 8097746 JUNB_MA0490.1 8.140477174450318 + +chr1 8097738 8097748 JUNB_MA0490.1 10.197421867046206 - +chr1 8167449 8167459 JUNB_MA0490.1 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JUN_var.2__MA0489.1 7.809377030508750 - +chr1 187051821 187051834 JUN_var.2__MA0489.1 7.075832679370173 + +chr1 187336849 187336862 JUN_var.2__MA0489.1 7.170593127628776 - +chr1 187337004 187337017 JUN_var.2__MA0489.1 8.295381623031801 + +chr1 187337009 187337022 JUN_var.2__MA0489.1 10.187771942152228 - +chr1 187948293 187948306 JUN_var.2__MA0489.1 9.366780567662747 + +chr1 187948298 187948311 JUN_var.2__MA0489.1 8.144315727793881 - +chr1 187986888 187986901 JUN_var.2__MA0489.1 8.590434144521543 + +chr1 188027790 188027803 JUN_var.2__MA0489.1 8.033456925268970 + +chr1 188027795 188027808 JUN_var.2__MA0489.1 7.723775599306820 - +chr1 188027807 188027820 JUN_var.2__MA0489.1 7.601689671913611 - +chr1 190759996 190760009 JUN_var.2__MA0489.1 8.022449563417009 - +chr1 192517120 192517133 JUN_var.2__MA0489.1 7.737729276470720 - +chr1 192530835 192530848 JUN_var.2__MA0489.1 7.467979305889029 - +chr1 192531169 192531182 JUN_var.2__MA0489.1 7.078354917786888 + +chr1 192531241 192531254 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JUN_var.2__MA0489.1 9.396313304046593 + +chr1 197776616 197776629 JUN_var.2__MA0489.1 7.587378732322691 - +chr1 198168271 198168284 JUN_var.2__MA0489.1 7.777198405972181 + +chr1 198253441 198253454 JUN_var.2__MA0489.1 8.399875440951570 - +chr1 198253944 198253957 JUN_var.2__MA0489.1 8.100753373141650 - +chr1 198353032 198353045 JUN_var.2__MA0489.1 7.507067904734354 + +chr1 198353037 198353050 JUN_var.2__MA0489.1 9.135707434140331 - +chr1 198520420 198520433 JUN_var.2__MA0489.1 8.453590954721719 + +chr1 198520724 198520737 JUN_var.2__MA0489.1 12.570498861773702 + +chr1 198520729 198520742 JUN_var.2__MA0489.1 10.123310884203772 - +chr1 198598874 198598887 JUN_var.2__MA0489.1 7.637400454817147 - +chr1 198641808 198641821 JUN_var.2__MA0489.1 9.047041941657628 + +chr1 198641813 198641826 JUN_var.2__MA0489.1 8.891821113332290 - +chr1 198734768 198734781 JUN_var.2__MA0489.1 11.219511207702601 + +chr1 198734773 198734786 JUN_var.2__MA0489.1 8.165264542031919 - +chr1 198937465 198937478 JUN_var.2__MA0489.1 10.093648937477159 + +chr1 199152176 199152189 JUN_var.2__MA0489.1 9.281405014000326 + +chr1 199152181 199152194 JUN_var.2__MA0489.1 9.050131375223694 - +chr1 199172809 199172822 JUN_var.2__MA0489.1 8.734162770117537 + +chr1 199172917 199172930 JUN_var.2__MA0489.1 7.053693085520501 + +chr1 199172955 199172968 JUN_var.2__MA0489.1 8.451773273192448 + +chr1 199272773 199272786 JUN_var.2__MA0489.1 8.022007263556162 + +chr1 199273029 199273042 JUN_var.2__MA0489.1 8.218051339445562 + diff --git a/demo/known_tfbs_chr1_hg38/KLF13_MA0657.1.bed b/demo/known_tfbs_chr1_hg38/KLF13_MA0657.1.bed new file mode 100644 index 0000000..38bb85d --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/KLF13_MA0657.1.bed @@ -0,0 +1,236 @@ +chr1 1013433 1013450 KLF13_MA0657.1 6.125652865145076 + +chr1 1019404 1019421 KLF13_MA0657.1 6.490734505707319 - +chr1 1019504 1019521 KLF13_MA0657.1 3.016350354464917 + +chr1 1019614 1019631 KLF13_MA0657.1 3.750129233874863 - +chr1 1033101 1033118 KLF13_MA0657.1 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KLF13_MA0657.1 7.170866749547954 + +chr1 6785249 6785266 KLF13_MA0657.1 3.134988360082931 - +chr1 7771029 7771046 KLF13_MA0657.1 3.374334743099282 + +chr1 8817739 8817756 KLF13_MA0657.1 4.415846811669841 + +chr1 8878750 8878767 KLF13_MA0657.1 8.128702746946358 + +chr1 9129526 9129543 KLF13_MA0657.1 3.924006320940289 + +chr1 9129609 9129626 KLF13_MA0657.1 4.086896829236565 + +chr1 9129677 9129694 KLF13_MA0657.1 5.045809382567557 + +chr1 9163938 9163955 KLF13_MA0657.1 5.942150915636205 + +chr1 9234684 9234701 KLF13_MA0657.1 7.251451004340497 - +chr1 9539564 9539581 KLF13_MA0657.1 3.170230955896355 - +chr1 9910895 9910912 KLF13_MA0657.1 7.012308606518086 - +chr1 9943036 9943053 KLF13_MA0657.1 5.698364753130813 + +chr1 11664556 11664573 KLF13_MA0657.1 5.037951775838779 - +chr1 11681192 11681209 KLF13_MA0657.1 11.360207909901806 + +chr1 11681616 11681633 KLF13_MA0657.1 4.390663446054771 - +chr1 11805962 11805979 KLF13_MA0657.1 3.378898123722625 - +chr1 11806398 11806415 KLF13_MA0657.1 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KLF13_MA0657.1 10.408275874209403 + +chr1 24745242 24745259 KLF13_MA0657.1 10.359016809370408 + +chr1 24965404 24965421 KLF13_MA0657.1 9.144394041195122 - +chr1 25022819 25022836 KLF13_MA0657.1 6.018828339504299 - +chr1 25247523 25247540 KLF13_MA0657.1 3.910088735998648 - +chr1 25338251 25338268 KLF13_MA0657.1 7.649002595857779 - +chr1 25543515 25543532 KLF13_MA0657.1 3.372719284848651 - +chr1 25616724 25616741 KLF13_MA0657.1 5.556364480143935 - +chr1 25905473 25905490 KLF13_MA0657.1 11.506243728270706 - +chr1 25905787 25905804 KLF13_MA0657.1 3.731015597910601 + +chr1 26035495 26035512 KLF13_MA0657.1 14.474798519864406 - +chr1 26111776 26111793 KLF13_MA0657.1 7.388609645872401 - +chr1 26432266 26432283 KLF13_MA0657.1 8.860907119673211 - +chr1 26542117 26542134 KLF13_MA0657.1 5.266061902099962 + +chr1 27155008 27155025 KLF13_MA0657.1 7.375835386100529 + +chr1 27490103 27490120 KLF13_MA0657.1 3.319444580061345 + +chr1 27568666 27568683 KLF13_MA0657.1 5.018563950243190 + +chr1 27660111 27660128 KLF13_MA0657.1 3.190454027283405 - +chr1 28088765 28088782 KLF13_MA0657.1 5.829705325866515 + +chr1 28088777 28088794 KLF13_MA0657.1 14.669902196462271 + +chr1 28581627 28581644 KLF13_MA0657.1 2.844508378054447 - +chr1 28668677 28668694 KLF13_MA0657.1 3.178313910436272 + +chr1 28669488 28669505 KLF13_MA0657.1 3.667352775539294 - +chr1 29230995 29231012 KLF13_MA0657.1 7.385868308078109 + +chr1 29231015 29231032 KLF13_MA0657.1 3.680816680570507 - +chr1 30719305 30719322 KLF13_MA0657.1 11.973310355812728 + +chr1 31065423 31065440 KLF13_MA0657.1 4.547137132562866 - +chr1 31788700 31788717 KLF13_MA0657.1 6.736602432791504 + +chr1 31937876 31937893 KLF13_MA0657.1 2.791797354948849 - +chr1 32013504 32013521 KLF13_MA0657.1 5.494520664116731 - +chr1 32073334 32073351 KLF13_MA0657.1 11.837105946338175 - +chr1 32108413 32108430 KLF13_MA0657.1 4.301916142158489 - +chr1 32351223 32351240 KLF13_MA0657.1 4.571508435402221 + +chr1 32351238 32351255 KLF13_MA0657.1 9.955403867886925 + +chr1 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KLF13_MA0657.1 3.617653353889451 + +chr1 61724639 61724656 KLF13_MA0657.1 5.376793283289254 - +chr1 61724926 61724943 KLF13_MA0657.1 2.847342473654797 - +chr1 62613361 62613378 KLF13_MA0657.1 4.971537059368387 + +chr1 63317503 63317520 KLF13_MA0657.1 7.586581232590256 - +chr1 66351788 66351805 KLF13_MA0657.1 3.819343609065036 + +chr1 66352036 66352053 KLF13_MA0657.1 3.466919735650472 - +chr1 66380333 66380350 KLF13_MA0657.1 4.988390155183941 - +chr1 66436706 66436723 KLF13_MA0657.1 3.395166583600833 + +chr1 66930466 66930483 KLF13_MA0657.1 3.500528574408637 - +chr1 67339691 67339708 KLF13_MA0657.1 5.183471074457434 + +chr1 67685935 67685952 KLF13_MA0657.1 10.779588221343335 - +chr1 67736226 67736243 KLF13_MA0657.1 6.555830263999082 + +chr1 67760020 67760037 KLF13_MA0657.1 3.974232178043997 - +chr1 70411130 70411147 KLF13_MA0657.1 3.376886278235647 + +chr1 74198160 74198177 KLF13_MA0657.1 5.988528933849560 - +chr1 75614771 75614788 KLF13_MA0657.1 6.435063546080851 + +chr1 75724317 75724334 KLF13_MA0657.1 3.355385891818774 + +chr1 75726941 75726958 KLF13_MA0657.1 3.663991822429236 - +chr1 75796696 75796713 KLF13_MA0657.1 3.413215596962622 - +chr1 75909043 75909060 KLF13_MA0657.1 9.441125478843160 + +chr1 77979460 77979477 KLF13_MA0657.1 3.306485852000713 - +chr1 83860921 83860938 KLF13_MA0657.1 2.863159270464213 + +chr1 84078049 84078066 KLF13_MA0657.1 5.361570756401353 - +chr1 84479795 84479812 KLF13_MA0657.1 3.410235218744993 + +chr1 85464715 85464732 KLF13_MA0657.1 4.308491850211781 + +chr1 86617063 86617080 KLF13_MA0657.1 4.205825337053403 - +chr1 86705097 86705114 KLF13_MA0657.1 5.041824471240465 - +chr1 87449881 87449898 KLF13_MA0657.1 3.993876258015504 + +chr1 88683833 88683850 KLF13_MA0657.1 3.830879736343668 - +chr1 88891958 88891975 KLF13_MA0657.1 4.715373543934239 + +chr1 89300301 89300318 KLF13_MA0657.1 3.279559040222873 - +chr1 89632781 89632798 KLF13_MA0657.1 3.268904765061226 - +chr1 89632796 89632813 KLF13_MA0657.1 3.478856745236381 - +chr1 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113191894 KLF13_MA0657.1 3.586019171410613 - +chr1 113390073 113390090 KLF13_MA0657.1 9.377706780763409 + +chr1 115771938 115771955 KLF13_MA0657.1 6.519294295049987 - +chr1 116556842 116556859 KLF13_MA0657.1 5.875094478416496 - +chr1 117060058 117060075 KLF13_MA0657.1 3.236776462385924 + +chr1 117605996 117606013 KLF13_MA0657.1 7.614635940710241 - +chr1 117929789 117929806 KLF13_MA0657.1 3.459755937797651 - +chr1 119662404 119662421 KLF13_MA0657.1 3.060204273517632 + +chr1 121184598 121184615 KLF13_MA0657.1 4.238853028918387 + +chr1 145845951 145845968 KLF13_MA0657.1 7.033651843014320 + +chr1 145927195 145927212 KLF13_MA0657.1 2.790232543535353 + +chr1 145957807 145957824 KLF13_MA0657.1 3.491319529171315 - diff --git a/demo/known_tfbs_chr1_hg38/KLF14_MA0740.1.bed b/demo/known_tfbs_chr1_hg38/KLF14_MA0740.1.bed new file mode 100644 index 0000000..5a3afeb --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/KLF14_MA0740.1.bed @@ -0,0 +1,1518 @@ +chr1 181486 181499 KLF14_MA0740.1 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KLF14_MA0740.1 10.567977204012672 - +chr1 2642749 2642762 KLF14_MA0740.1 5.892452144849646 - +chr1 2643230 2643243 KLF14_MA0740.1 7.643812071207147 - +chr1 2654805 2654818 KLF14_MA0740.1 6.696392117115155 + +chr1 2655646 2655659 KLF14_MA0740.1 6.696392117115155 + +chr1 2684148 2684161 KLF14_MA0740.1 6.401482348158534 + +chr1 2684268 2684281 KLF14_MA0740.1 7.336125550904863 + +chr1 3491447 3491460 KLF14_MA0740.1 9.674764548915665 + +chr1 3491669 3491682 KLF14_MA0740.1 10.402939842609754 + +chr1 3624764 3624777 KLF14_MA0740.1 10.567977204012672 + +chr1 3624923 3624936 KLF14_MA0740.1 8.705206767709450 - +chr1 3624988 3625001 KLF14_MA0740.1 7.356226459046847 - +chr1 3747484 3747497 KLF14_MA0740.1 8.354966155466865 - +chr1 3772480 3772493 KLF14_MA0740.1 7.854650289234073 + +chr1 3772545 3772558 KLF14_MA0740.1 11.781926709383727 + +chr1 3772561 3772574 KLF14_MA0740.1 10.028232979343741 + +chr1 3772576 3772589 KLF14_MA0740.1 6.705071724432196 + +chr1 3772642 3772655 KLF14_MA0740.1 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KLF14_MA0740.1 7.604383712771009 - +chr1 7771210 7771223 KLF14_MA0740.1 8.598799120452970 + +chr1 7771225 7771238 KLF14_MA0740.1 6.529391866899944 + +chr1 7771241 7771254 KLF14_MA0740.1 9.733323210387120 + +chr1 7783910 7783923 KLF14_MA0740.1 9.003813501653180 + +chr1 7784133 7784146 KLF14_MA0740.1 11.530758695029451 + +chr1 7784241 7784254 KLF14_MA0740.1 6.993674350000998 - +chr1 7954235 7954248 KLF14_MA0740.1 9.161365249105618 + +chr1 7961804 7961817 KLF14_MA0740.1 6.714261330211443 - +chr1 8026037 8026050 KLF14_MA0740.1 6.626891324848012 + +chr1 8026375 8026388 KLF14_MA0740.1 6.816574415237264 + +chr1 8703140 8703153 KLF14_MA0740.1 5.940128656482501 - +chr1 8817740 8817753 KLF14_MA0740.1 6.971407754023118 + +chr1 8817804 8817817 KLF14_MA0740.1 6.467114317101484 - +chr1 8878727 8878740 KLF14_MA0740.1 7.492840048145923 + +chr1 8878751 8878764 KLF14_MA0740.1 11.415823122107357 + +chr1 8878854 8878867 KLF14_MA0740.1 6.795026264578372 - +chr1 8879008 8879021 KLF14_MA0740.1 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KLF14_MA0740.1 7.866309934352872 - +chr1 11980132 11980145 KLF14_MA0740.1 10.637546039932444 + +chr1 11980310 11980323 KLF14_MA0740.1 6.521664646280643 - +chr1 12019311 12019324 KLF14_MA0740.1 5.883333417231928 + +chr1 12019387 12019400 KLF14_MA0740.1 8.194434908387887 + +chr1 13700431 13700444 KLF14_MA0740.1 9.729799317406311 + +chr1 13749296 13749309 KLF14_MA0740.1 7.565632311282501 + +chr1 14924051 14924064 KLF14_MA0740.1 7.565632311282501 - +chr1 14924062 14924075 KLF14_MA0740.1 7.565632311282501 - +chr1 15409692 15409705 KLF14_MA0740.1 5.901127336231295 - +chr1 15409820 15409833 KLF14_MA0740.1 7.565632311282501 - +chr1 15524273 15524286 KLF14_MA0740.1 8.118569630416129 + +chr1 15524363 15524376 KLF14_MA0740.1 7.854650289234073 + +chr1 15524426 15524439 KLF14_MA0740.1 7.854650289234073 + +chr1 15524593 15524606 KLF14_MA0740.1 7.565632311282501 + +chr1 15524800 15524813 KLF14_MA0740.1 7.854650289234073 + +chr1 15524893 15524906 KLF14_MA0740.1 7.854650289234073 + +chr1 15524913 15524926 KLF14_MA0740.1 8.491595906711790 + +chr1 15524924 15524937 KLF14_MA0740.1 7.944181260163759 + +chr1 15524955 15524968 KLF14_MA0740.1 8.582243983868342 + +chr1 15525080 15525093 KLF14_MA0740.1 8.582243983868342 + +chr1 15617266 15617279 KLF14_MA0740.1 11.072130728391251 + +chr1 15617328 15617341 KLF14_MA0740.1 10.109119277909636 + +chr1 15684656 15684669 KLF14_MA0740.1 8.482816275787137 + +chr1 15834940 15834953 KLF14_MA0740.1 6.557530670824534 + +chr1 15834951 15834964 KLF14_MA0740.1 7.005749347502567 + +chr1 15836040 15836053 KLF14_MA0740.1 7.143316790197797 - +chr1 15975732 15975745 KLF14_MA0740.1 5.870049119565606 + +chr1 15975791 15975804 KLF14_MA0740.1 7.533692269033822 + +chr1 16013005 16013018 KLF14_MA0740.1 8.807427671875924 - +chr1 16206535 16206548 KLF14_MA0740.1 8.967159404545461 + +chr1 16206580 16206593 KLF14_MA0740.1 9.865391502538024 + +chr1 16206598 16206611 KLF14_MA0740.1 6.758486553618487 + +chr1 16206628 16206641 KLF14_MA0740.1 5.887022852803594 + +chr1 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KLF14_MA0740.1 6.577530691062106 - +chr1 32292075 32292088 KLF14_MA0740.1 8.073909970391419 + +chr1 32292237 32292250 KLF14_MA0740.1 9.068158026968211 - +chr1 32351211 32351224 KLF14_MA0740.1 8.037720290183460 + +chr1 32351239 32351252 KLF14_MA0740.1 12.406466039977769 + +chr1 32351414 32351427 KLF14_MA0740.1 9.758598610747377 + +chr1 32351450 32351463 KLF14_MA0740.1 5.939467967357523 + +chr1 32351469 32351482 KLF14_MA0740.1 7.644686575344028 + +chr1 32351514 32351527 KLF14_MA0740.1 7.755618371157367 + +chr1 32351532 32351545 KLF14_MA0740.1 6.621811535930921 + +chr1 32351584 32351597 KLF14_MA0740.1 8.504372658057452 + +chr1 32394298 32394311 KLF14_MA0740.1 8.129417040533722 + +chr1 32394558 32394571 KLF14_MA0740.1 7.356345055160341 + +chr1 32520902 32520915 KLF14_MA0740.1 8.342524282744304 + +chr1 32650604 32650617 KLF14_MA0740.1 7.206583457154564 + +chr1 32651049 32651062 KLF14_MA0740.1 6.641602221754230 - +chr1 32651121 32651134 KLF14_MA0740.1 5.908579235073911 + +chr1 32817486 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KLF14_MA0740.1 5.884890606614548 + +chr1 200888525 200888538 KLF14_MA0740.1 7.645953979089862 + +chr1 201170808 201170821 KLF14_MA0740.1 6.842536080262722 + +chr1 201468742 201468755 KLF14_MA0740.1 6.097035014390287 + +chr1 201469267 201469280 KLF14_MA0740.1 8.207597440117906 - +chr1 201480828 201480841 KLF14_MA0740.1 6.873111135447573 - +chr1 201480844 201480857 KLF14_MA0740.1 8.312664020120954 - +chr1 201482024 201482037 KLF14_MA0740.1 6.823281579613088 + +chr1 201982568 201982581 KLF14_MA0740.1 8.935191134752174 - +chr1 201982588 201982601 KLF14_MA0740.1 6.420687895595472 - +chr1 202144740 202144753 KLF14_MA0740.1 6.828706853836191 - +chr1 202341975 202341988 KLF14_MA0740.1 8.807427671875924 + +chr1 202810901 202810914 KLF14_MA0740.1 8.207597440117906 - +chr1 202888840 202888853 KLF14_MA0740.1 8.336959193627564 - +chr1 202888866 202888879 KLF14_MA0740.1 6.053746728661737 - +chr1 202957981 202957994 KLF14_MA0740.1 5.813662313471665 - +chr1 202967272 202967285 KLF14_MA0740.1 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206635435 KLF14_MA0740.1 8.917623380575218 + +chr1 206635467 206635480 KLF14_MA0740.1 6.590136151510103 - +chr1 206684850 206684863 KLF14_MA0740.1 10.109119277909636 + +chr1 206685529 206685542 KLF14_MA0740.1 7.758021300653463 - +chr1 207053155 207053168 KLF14_MA0740.1 10.338064283351649 + +chr1 207053224 207053237 KLF14_MA0740.1 11.530758695029451 - +chr1 207454182 207454195 KLF14_MA0740.1 6.513215679856263 + +chr1 207752062 207752075 KLF14_MA0740.1 14.019551498877748 + +chr1 207868408 207868421 KLF14_MA0740.1 8.694164760471573 + +chr1 207868688 207868701 KLF14_MA0740.1 10.767234458282877 + +chr1 207868994 207869007 KLF14_MA0740.1 6.008628822883245 + +chr1 209607405 209607418 KLF14_MA0740.1 6.248049881202343 - +chr1 209828175 209828188 KLF14_MA0740.1 12.768377937635821 - +chr1 210311495 210311508 KLF14_MA0740.1 6.742077441626904 - +chr1 210328817 210328830 KLF14_MA0740.1 7.690594151978911 + +chr1 210328912 210328925 KLF14_MA0740.1 7.352378239324758 - +chr1 210333030 210333043 KLF14_MA0740.1 7.160496586639779 - +chr1 211258971 211258984 KLF14_MA0740.1 6.417861681660834 - +chr1 211259200 211259213 KLF14_MA0740.1 6.203489004030533 + +chr1 211259345 211259358 KLF14_MA0740.1 7.607486654260470 - +chr1 211578167 211578180 KLF14_MA0740.1 7.414019682837028 - +chr1 211578247 211578260 KLF14_MA0740.1 7.116452351938109 + +chr1 211579255 211579268 KLF14_MA0740.1 9.039277487901572 + +chr1 211579328 211579341 KLF14_MA0740.1 7.286521660786523 + +chr1 211579367 211579380 KLF14_MA0740.1 11.704942815948657 - +chr1 211579394 211579407 KLF14_MA0740.1 10.067201945377095 - +chr1 211579435 211579448 KLF14_MA0740.1 7.147850621524140 - +chr1 211579494 211579507 KLF14_MA0740.1 6.159754076013297 - +chr1 211579629 211579642 KLF14_MA0740.1 6.067740744711639 - +chr1 211939006 211939019 KLF14_MA0740.1 6.351805361569590 + +chr1 212284834 212284847 KLF14_MA0740.1 9.296730297451459 + +chr1 212285267 212285280 KLF14_MA0740.1 6.513426235199913 + +chr1 212558559 212558572 KLF14_MA0740.1 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221047098 KLF14_MA0740.1 8.342524282744304 + +chr1 221742126 221742139 KLF14_MA0740.1 6.382455403648909 - +chr1 221742226 221742239 KLF14_MA0740.1 6.644794036548701 - +chr1 221742238 221742251 KLF14_MA0740.1 8.234513851316349 - +chr1 221742967 221742980 KLF14_MA0740.1 9.423988004285169 + +chr1 221778655 221778668 KLF14_MA0740.1 9.654083363578163 + +chr1 222589665 222589678 KLF14_MA0740.1 8.072912411798340 + +chr1 222617954 222617967 KLF14_MA0740.1 6.431108221348350 + +chr1 222617966 222617979 KLF14_MA0740.1 6.409129326706863 + +chr1 222618032 222618045 KLF14_MA0740.1 6.409129326706863 + +chr1 222618043 222618056 KLF14_MA0740.1 8.102696412564331 + +chr1 222618404 222618417 KLF14_MA0740.1 6.537866259654941 - +chr1 222712518 222712531 KLF14_MA0740.1 8.297128411047593 + +chr1 222814869 222814882 KLF14_MA0740.1 5.901127336231294 + +chr1 222814988 222815001 KLF14_MA0740.1 7.123036103510656 - +chr1 222815397 222815410 KLF14_MA0740.1 11.800682753668651 - +chr1 223143287 223143300 KLF14_MA0740.1 7.912687671161284 + +chr1 223143303 223143316 KLF14_MA0740.1 8.839546809054369 + diff --git a/demo/known_tfbs_chr1_hg38/KLF16_MA0741.1.bed b/demo/known_tfbs_chr1_hg38/KLF16_MA0741.1.bed new file mode 100644 index 0000000..49dc43e --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/KLF16_MA0741.1.bed @@ -0,0 +1,3025 @@ +chr1 181488 181498 KLF16_MA0741.1 9.616863955486270 - +chr1 181536 181546 KLF16_MA0741.1 10.745178617513192 - +chr1 181578 181588 KLF16_MA0741.1 10.412888069895981 - +chr1 181584 181594 KLF16_MA0741.1 8.182382664058968 - +chr1 181585 181595 KLF16_MA0741.1 8.182382664058968 - +chr1 181586 181596 KLF16_MA0741.1 8.182382664058968 - +chr1 181587 181597 KLF16_MA0741.1 8.182382664058968 - +chr1 181588 181598 KLF16_MA0741.1 8.182382664058968 - +chr1 181589 181599 KLF16_MA0741.1 8.182382664058968 - +chr1 181590 181600 KLF16_MA0741.1 8.182382664058968 - +chr1 181591 181601 KLF16_MA0741.1 9.285346809009249 - +chr1 827541 827551 KLF16_MA0741.1 10.044951804235355 - +chr1 827620 827630 KLF16_MA0741.1 8.140359893168750 - +chr1 827641 827651 KLF16_MA0741.1 7.782043391674872 + +chr1 1013435 1013445 KLF16_MA0741.1 9.389438747843672 + +chr1 1019409 1019419 KLF16_MA0741.1 10.958672123483838 - +chr1 1019482 1019492 KLF16_MA0741.1 11.515852214846262 - +chr1 1019497 1019507 KLF16_MA0741.1 10.044951804235355 - +chr1 1019549 1019559 KLF16_MA0741.1 8.121713864606514 + +chr1 1019614 1019624 KLF16_MA0741.1 10.129012192067052 - +chr1 1019619 1019629 KLF16_MA0741.1 7.369051724100491 - +chr1 1019789 1019799 KLF16_MA0741.1 10.129012192067052 - +chr1 1019814 1019824 KLF16_MA0741.1 10.934422443214990 + +chr1 1019835 1019845 KLF16_MA0741.1 9.611260303779657 + +chr1 1019959 1019969 KLF16_MA0741.1 7.782043391674872 - +chr1 1020017 1020027 KLF16_MA0741.1 9.611260303779657 - +chr1 1020035 1020045 KLF16_MA0741.1 10.129012192067052 - +chr1 1020055 1020065 KLF16_MA0741.1 11.515852214846262 + +chr1 1033303 1033313 KLF16_MA0741.1 7.088878405815977 + +chr1 1059381 1059391 KLF16_MA0741.1 7.252344905353884 + +chr1 1059386 1059396 KLF16_MA0741.1 11.515852214846262 + +chr1 1059628 1059638 KLF16_MA0741.1 12.429572534094746 - +chr1 1059641 1059651 KLF16_MA0741.1 8.166065224602368 - +chr1 1059653 1059663 KLF16_MA0741.1 8.166065224602368 - +chr1 1059680 1059690 KLF16_MA0741.1 7.941752802043891 - +chr1 1116090 1116100 KLF16_MA0741.1 7.250543958440081 + +chr1 1116111 1116121 KLF16_MA0741.1 8.839952134711398 + +chr1 1116247 1116257 KLF16_MA0741.1 9.349250548017135 - +chr1 1116260 1116270 KLF16_MA0741.1 7.252344905353886 - +chr1 1116390 1116400 KLF16_MA0741.1 7.252344905353886 - +chr1 1157463 1157473 KLF16_MA0741.1 7.399374181098201 + +chr1 1157475 1157485 KLF16_MA0741.1 7.597185177184964 + +chr1 1157864 1157874 KLF16_MA0741.1 7.252344905353884 + +chr1 1231817 1231827 KLF16_MA0741.1 7.553055417306140 + +chr1 1231991 1232001 KLF16_MA0741.1 8.260206447935175 - +chr1 1232293 1232303 KLF16_MA0741.1 8.313094500346685 - +chr1 1273988 1273998 KLF16_MA0741.1 11.515852214846262 - +chr1 1274182 1274192 KLF16_MA0741.1 7.407941351483166 + +chr1 1307947 1307957 KLF16_MA0741.1 7.252344905353884 + +chr1 1308474 1308484 KLF16_MA0741.1 8.703143636237787 + +chr1 1308549 1308559 KLF16_MA0741.1 9.026048047116770 - +chr1 1308555 1308565 KLF16_MA0741.1 8.182382664058968 - +chr1 1308556 1308566 KLF16_MA0741.1 9.285346809009249 - +chr1 1308561 1308571 KLF16_MA0741.1 9.798727855873636 - +chr1 1324767 1324777 KLF16_MA0741.1 8.134485188937413 - +chr1 1324778 1324788 KLF16_MA0741.1 8.134485188937413 - +chr1 1324790 1324800 KLF16_MA0741.1 8.621542123034851 - +chr1 1349466 1349476 KLF16_MA0741.1 11.515852214846262 - +chr1 1349508 1349518 KLF16_MA0741.1 7.252344905353884 + +chr1 1349513 1349523 KLF16_MA0741.1 7.252344905353884 + +chr1 1349524 1349534 KLF16_MA0741.1 11.515852214846262 + +chr1 1399377 1399387 KLF16_MA0741.1 7.252344905353884 + +chr1 1471603 1471613 KLF16_MA0741.1 11.545631303597411 + +chr1 1471610 1471620 KLF16_MA0741.1 7.031521043987133 + +chr1 1471755 1471765 KLF16_MA0741.1 8.097394720817963 - +chr1 1505453 1505463 KLF16_MA0741.1 7.486000247850384 - +chr1 1512139 1512149 KLF16_MA0741.1 8.097394720817963 - +chr1 1574710 1574720 KLF16_MA0741.1 8.621542123034851 + +chr1 1615284 1615294 KLF16_MA0741.1 8.134877536645682 + +chr1 1615448 1615458 KLF16_MA0741.1 12.429572534094746 - +chr1 1615479 1615489 KLF16_MA0741.1 8.475718428595188 - +chr1 1630201 1630211 KLF16_MA0741.1 10.631910984348931 + +chr1 1630316 1630326 KLF16_MA0741.1 10.412888069895981 + +chr1 1678277 1678287 KLF16_MA0741.1 9.026048047116769 + +chr1 1678453 1678463 KLF16_MA0741.1 8.224420281000445 + +chr1 1692520 1692530 KLF16_MA0741.1 7.399374181098201 - +chr1 1692593 1692603 KLF16_MA0741.1 7.124065473654237 - +chr1 1692752 1692762 KLF16_MA0741.1 8.289985536686324 + +chr1 1692836 1692846 KLF16_MA0741.1 8.224420281000445 + +chr1 1693167 1693177 KLF16_MA0741.1 10.338968728761941 + +chr1 1745868 1745878 KLF16_MA0741.1 7.124065473654237 - +chr1 1746027 1746037 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8.182382664058968 - +chr1 1909234 1909244 KLF16_MA0741.1 7.380754897942643 - +chr1 1909250 1909260 KLF16_MA0741.1 8.166065224602368 - +chr1 1909268 1909278 KLF16_MA0741.1 8.166065224602368 - +chr1 1909286 1909296 KLF16_MA0741.1 7.252344905353886 - +chr1 1919311 1919321 KLF16_MA0741.1 10.526134034101457 + +chr1 1919327 1919337 KLF16_MA0741.1 9.681541095634344 + +chr1 1919343 1919353 KLF16_MA0741.1 10.858424581718666 + +chr1 1919374 1919384 KLF16_MA0741.1 9.642192803604125 + +chr1 1919404 1919414 KLF16_MA0741.1 10.526134034101457 + +chr1 1919452 1919462 KLF16_MA0741.1 7.250543958440081 + +chr1 1919530 1919540 KLF16_MA0741.1 9.642192803604125 + +chr1 1919576 1919586 KLF16_MA0741.1 10.526134034101457 + +chr1 1919640 1919650 KLF16_MA0741.1 9.642192803604125 + +chr1 1919701 1919711 KLF16_MA0741.1 7.234702100255638 + +chr1 1919715 1919725 KLF16_MA0741.1 7.521187315688640 + +chr1 2050253 2050263 KLF16_MA0741.1 7.399374181098201 + +chr1 2050417 2050427 KLF16_MA0741.1 7.376265217437844 + +chr1 2133328 2133338 KLF16_MA0741.1 7.941752802043891 + +chr1 2133360 2133370 KLF16_MA0741.1 7.941752802043891 + +chr1 2133526 2133536 KLF16_MA0741.1 8.294475217191126 + +chr1 2133588 2133598 KLF16_MA0741.1 7.057811571546559 + +chr1 2133619 2133629 KLF16_MA0741.1 7.941752802043891 + +chr1 2194781 2194791 KLF16_MA0741.1 11.515852214846262 + +chr1 2194787 2194797 KLF16_MA0741.1 8.941987659285072 + +chr1 2194802 2194812 KLF16_MA0741.1 11.515852214846262 + +chr1 2194819 2194829 KLF16_MA0741.1 8.703143636237787 + +chr1 2194940 2194950 KLF16_MA0741.1 7.868355060261059 - +chr1 2195093 2195103 KLF16_MA0741.1 7.782043391674872 + +chr1 2205234 2205244 KLF16_MA0741.1 10.044951804235353 + +chr1 2205278 2205288 KLF16_MA0741.1 9.161010573738022 + +chr1 2205313 2205323 KLF16_MA0741.1 7.252344905353884 + +chr1 2205328 2205338 KLF16_MA0741.1 7.895289355880347 + +chr1 2205530 2205540 KLF16_MA0741.1 7.042999399925081 - +chr1 2227710 2227720 KLF16_MA0741.1 7.399374181098201 - +chr1 2227951 2227961 KLF16_MA0741.1 11.515852214846262 - +chr1 2227986 2227996 KLF16_MA0741.1 7.252344905353886 - +chr1 2301206 2301216 KLF16_MA0741.1 8.360557887653799 + +chr1 2391595 2391605 KLF16_MA0741.1 8.514673211676179 - +chr1 2391597 2391607 KLF16_MA0741.1 11.252689048010424 - +chr1 2391783 2391793 KLF16_MA0741.1 8.134485188937413 + +chr1 2412539 2412549 KLF16_MA0741.1 11.439854353349938 + +chr1 2412622 2412632 KLF16_MA0741.1 7.597185177184966 - +chr1 2412645 2412655 KLF16_MA0741.1 8.703143636237787 - +chr1 2412701 2412711 KLF16_MA0741.1 7.252344905353886 - +chr1 2412749 2412759 KLF16_MA0741.1 7.252344905353886 - +chr1 2412774 2412784 KLF16_MA0741.1 11.515852214846262 - +chr1 2526359 2526369 KLF16_MA0741.1 7.736987989761117 + +chr1 2526416 2526426 KLF16_MA0741.1 7.399374181098201 + +chr1 2526420 2526430 KLF16_MA0741.1 7.372754283644908 + +chr1 2526647 2526657 KLF16_MA0741.1 7.489532850602103 + +chr1 2526686 2526696 KLF16_MA0741.1 10.044951804235353 + +chr1 2526702 2526712 KLF16_MA0741.1 9.236004583811660 + +chr1 2546507 2546517 KLF16_MA0741.1 8.360557887653801 - +chr1 2546897 2546907 KLF16_MA0741.1 9.642192803604125 + +chr1 2547013 2547023 KLF16_MA0741.1 7.063101079652088 - +chr1 2547031 2547041 KLF16_MA0741.1 7.668393600711336 + +chr1 2547067 2547077 KLF16_MA0741.1 7.526260150153466 - +chr1 2547900 2547910 KLF16_MA0741.1 7.147237876263161 + +chr1 2548034 2548044 KLF16_MA0741.1 8.224420281000446 - +chr1 2548895 2548905 KLF16_MA0741.1 8.841740117519903 - +chr1 2556346 2556356 KLF16_MA0741.1 7.668393600711336 + +chr1 2578420 2578430 KLF16_MA0741.1 7.498167513845940 + +chr1 2578432 2578442 KLF16_MA0741.1 8.841740117519903 + +chr1 2586134 2586144 KLF16_MA0741.1 10.412888069895981 + +chr1 2586461 2586471 KLF16_MA0741.1 7.232243225626878 - +chr1 2586473 2586483 KLF16_MA0741.1 7.414107126014246 - +chr1 2586631 2586641 KLF16_MA0741.1 7.941752802043891 - +chr1 2586660 2586670 KLF16_MA0741.1 12.429572534094746 - +chr1 2586693 2586703 KLF16_MA0741.1 8.475718428595188 - +chr1 2586724 2586734 KLF16_MA0741.1 10.044951804235355 - +chr1 2586771 2586781 KLF16_MA0741.1 7.252344905353886 - +chr1 2643232 2643242 KLF16_MA0741.1 10.044951804235355 - +chr1 2653160 2653170 KLF16_MA0741.1 9.160006722315336 + +chr1 2653200 2653210 KLF16_MA0741.1 10.149724903060141 + +chr1 2653321 2653331 KLF16_MA0741.1 9.568295131428869 + +chr1 2653361 2653371 KLF16_MA0741.1 10.149724903060141 + +chr1 2653401 2653411 KLF16_MA0741.1 10.149724903060141 + +chr1 2653482 2653492 KLF16_MA0741.1 10.149724903060141 + +chr1 2653522 2653532 KLF16_MA0741.1 10.149724903060141 + +chr1 2653643 2653653 KLF16_MA0741.1 9.348097136943817 + +chr1 2653683 2653693 KLF16_MA0741.1 10.149724903060141 + +chr1 2653763 2653773 KLF16_MA0741.1 10.149724903060141 + +chr1 2653803 2653813 KLF16_MA0741.1 10.149724903060141 + +chr1 2653883 2653893 KLF16_MA0741.1 9.160006722315336 + +chr1 2653923 2653933 KLF16_MA0741.1 10.149724903060141 + +chr1 2654003 2654013 KLF16_MA0741.1 10.149724903060141 + +chr1 2654123 2654133 KLF16_MA0741.1 10.149724903060141 + +chr1 2654163 2654173 KLF16_MA0741.1 10.149724903060141 + +chr1 2654526 2654536 KLF16_MA0741.1 9.348097136943817 + +chr1 2654566 2654576 KLF16_MA0741.1 10.149724903060141 + +chr1 2654606 2654616 KLF16_MA0741.1 10.149724903060141 + +chr1 2654646 2654656 KLF16_MA0741.1 10.149724903060141 + +chr1 2654726 2654736 KLF16_MA0741.1 8.678824492449234 + +chr1 2654806 2654816 KLF16_MA0741.1 10.368747817513089 + +chr1 2654966 2654976 KLF16_MA0741.1 10.149724903060141 + +chr1 2655447 2655457 KLF16_MA0741.1 10.149724903060141 + +chr1 2655487 2655497 KLF16_MA0741.1 10.149724903060141 + +chr1 2655527 2655537 KLF16_MA0741.1 7.109591116809068 + +chr1 2655647 2655657 KLF16_MA0741.1 10.368747817513089 + +chr1 2655728 2655738 KLF16_MA0741.1 10.149724903060141 + +chr1 2655730 2655740 KLF16_MA0741.1 7.524955030931370 + +chr1 2655848 2655858 KLF16_MA0741.1 10.149724903060141 + +chr1 2655968 2655978 KLF16_MA0741.1 10.149724903060141 + +chr1 2656008 2656018 KLF16_MA0741.1 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KLF16_MA0741.1 8.839952134711400 - +chr1 3625180 3625190 KLF16_MA0741.1 9.611260303779657 - +chr1 3666561 3666571 KLF16_MA0741.1 9.423169889151175 - +chr1 3677547 3677557 KLF16_MA0741.1 7.158933342006660 - +chr1 3747412 3747422 KLF16_MA0741.1 8.868068318151034 - +chr1 3747486 3747496 KLF16_MA0741.1 7.941752802043891 - +chr1 3772481 3772491 KLF16_MA0741.1 11.515852214846262 + +chr1 3772546 3772556 KLF16_MA0741.1 11.515852214846262 + +chr1 3772562 3772572 KLF16_MA0741.1 11.515852214846262 + +chr1 3772577 3772587 KLF16_MA0741.1 11.515852214846262 + +chr1 3772643 3772653 KLF16_MA0741.1 10.526134034101457 + +chr1 3772721 3772731 KLF16_MA0741.1 11.515852214846262 + +chr1 3772727 3772737 KLF16_MA0741.1 7.031521043987133 + +chr1 3796498 3796508 KLF16_MA0741.1 7.664856631435581 + +chr1 3856800 3856810 KLF16_MA0741.1 7.956010904214065 + +chr1 3899947 3899957 KLF16_MA0741.1 9.048205508185896 - +chr1 3899976 3899986 KLF16_MA0741.1 8.327827445262729 - +chr1 3900328 3900338 KLF16_MA0741.1 7.380754897942642 + +chr1 3900329 3900339 KLF16_MA0741.1 8.182382664058967 + +chr1 3900330 3900340 KLF16_MA0741.1 8.182382664058967 + +chr1 3900331 3900341 KLF16_MA0741.1 8.182382664058967 + +chr1 3900332 3900342 KLF16_MA0741.1 8.182382664058967 + +chr1 3900333 3900343 KLF16_MA0741.1 8.182382664058967 + +chr1 3900334 3900344 KLF16_MA0741.1 8.182382664058967 + +chr1 3900335 3900345 KLF16_MA0741.1 8.182382664058967 + +chr1 3900336 3900346 KLF16_MA0741.1 8.182382664058967 + +chr1 3900936 3900946 KLF16_MA0741.1 8.658111781456141 + +chr1 3901362 3901372 KLF16_MA0741.1 10.958672123483836 + +chr1 3901398 3901408 KLF16_MA0741.1 9.616863955486268 + +chr1 3901451 3901461 KLF16_MA0741.1 9.616863955486268 + +chr1 3901469 3901479 KLF16_MA0741.1 9.493301121355231 + +chr1 5992640 5992650 KLF16_MA0741.1 8.145963544875361 - +chr1 6026241 6026251 KLF16_MA0741.1 8.166065224602367 + +chr1 6026826 6026836 KLF16_MA0741.1 7.079797785927442 - +chr1 6026978 6026988 KLF16_MA0741.1 8.224420281000445 + +chr1 6199673 6199683 KLF16_MA0741.1 10.958672123483836 + +chr1 6205460 6205470 KLF16_MA0741.1 9.455027498264609 - +chr1 6206314 6206324 KLF16_MA0741.1 10.044951804235353 + +chr1 6235386 6235396 KLF16_MA0741.1 9.349250548017135 + +chr1 6236097 6236107 KLF16_MA0741.1 7.399374181098201 + +chr1 6236115 6236125 KLF16_MA0741.1 8.140359893168748 + +chr1 6260886 6260896 KLF16_MA0741.1 7.736987989761117 + +chr1 6261099 6261109 KLF16_MA0741.1 10.412888069895981 - +chr1 6261106 6261116 KLF16_MA0741.1 7.941752802043891 - +chr1 6359436 6359446 KLF16_MA0741.1 9.781788637399515 + +chr1 6359454 6359464 KLF16_MA0741.1 9.939768366365250 + +chr1 6359913 6359923 KLF16_MA0741.1 10.053014330570726 + +chr1 6393486 6393496 KLF16_MA0741.1 10.631910984348931 + +chr1 6393515 6393525 KLF16_MA0741.1 8.703143636237787 + +chr1 6393887 6393897 KLF16_MA0741.1 10.412888069895981 + +chr1 6490254 6490264 KLF16_MA0741.1 7.782043391674872 - +chr1 6490398 6490408 KLF16_MA0741.1 7.708124050540832 + +chr1 6490768 6490778 KLF16_MA0741.1 7.555147636505862 - +chr1 6490774 6490784 KLF16_MA0741.1 9.236004583811662 - +chr1 6579932 6579942 KLF16_MA0741.1 8.134485188937413 + +chr1 6580213 6580223 KLF16_MA0741.1 7.850233953966593 - +chr1 6602931 6602941 KLF16_MA0741.1 7.150641712423941 - +chr1 6602949 6602959 KLF16_MA0741.1 8.260206447935175 + +chr1 6602981 6602991 KLF16_MA0741.1 7.157242302984895 + +chr1 6603024 6603034 KLF16_MA0741.1 7.372754283644908 + +chr1 6603258 6603268 KLF16_MA0741.1 7.386358549649255 + +chr1 6613254 6613264 KLF16_MA0741.1 8.140359893168748 + +chr1 6613386 6613396 KLF16_MA0741.1 11.515852214846262 + +chr1 6613410 6613420 KLF16_MA0741.1 7.782043391674872 + +chr1 6613456 6613466 KLF16_MA0741.1 10.129012192067050 + +chr1 6613527 6613537 KLF16_MA0741.1 8.121713864606514 + +chr1 6613625 6613635 KLF16_MA0741.1 9.169073100073394 + +chr1 6613659 6613669 KLF16_MA0741.1 12.429572534094744 + +chr1 6614242 6614252 KLF16_MA0741.1 7.147237876263161 + +chr1 6614248 6614258 KLF16_MA0741.1 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9588663 9588673 KLF16_MA0741.1 10.526134034101457 + +chr1 9588726 9588736 KLF16_MA0741.1 8.475718428595188 - +chr1 9588809 9588819 KLF16_MA0741.1 7.736987989761117 + +chr1 9589090 9589100 KLF16_MA0741.1 8.475718428595188 + +chr1 9629770 9629780 KLF16_MA0741.1 7.765104173200751 + +chr1 9687578 9687588 KLF16_MA0741.1 7.945241363235615 - +chr1 9687586 9687596 KLF16_MA0741.1 11.515852214846262 - +chr1 9689411 9689421 KLF16_MA0741.1 7.518880224839034 - +chr1 9689458 9689468 KLF16_MA0741.1 7.597185177184964 + +chr1 9689480 9689490 KLF16_MA0741.1 11.515852214846262 + +chr1 9689498 9689508 KLF16_MA0741.1 7.252344905353884 + +chr1 9689525 9689535 KLF16_MA0741.1 7.252344905353884 + +chr1 9824008 9824018 KLF16_MA0741.1 10.631910984348931 - +chr1 9824028 9824038 KLF16_MA0741.1 8.140359893168750 - +chr1 9824094 9824104 KLF16_MA0741.1 8.941987659285074 - +chr1 9910021 9910031 KLF16_MA0741.1 7.453112111932186 + +chr1 9910291 9910301 KLF16_MA0741.1 7.498167513845942 - +chr1 9910394 9910404 KLF16_MA0741.1 7.252344905353886 - +chr1 9910407 9910417 KLF16_MA0741.1 7.399374181098201 - +chr1 9910412 9910422 KLF16_MA0741.1 7.252344905353886 - +chr1 9910452 9910462 KLF16_MA0741.1 10.526134034101457 - +chr1 9910472 9910482 KLF16_MA0741.1 7.252344905353886 - +chr1 9910559 9910569 KLF16_MA0741.1 8.841740117519903 - +chr1 9910900 9910910 KLF16_MA0741.1 7.262022314378029 - +chr1 9943338 9943348 KLF16_MA0741.1 7.713425455492980 + +chr1 9950725 9950735 KLF16_MA0741.1 7.192740779327536 + +chr1 9950730 9950740 KLF16_MA0741.1 8.224420281000445 + +chr1 10032928 10032938 KLF16_MA0741.1 8.703143636237787 + +chr1 10033082 10033092 KLF16_MA0741.1 9.026048047116769 + +chr1 10033111 10033121 KLF16_MA0741.1 8.703143636237787 - +chr1 10033116 10033126 KLF16_MA0741.1 8.166065224602368 - +chr1 10033141 10033151 KLF16_MA0741.1 8.658111781456142 - +chr1 10210182 10210192 KLF16_MA0741.1 7.252344905353884 + +chr1 10210813 10210823 KLF16_MA0741.1 7.736987989761117 + +chr1 10398834 10398844 KLF16_MA0741.1 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KLF16_MA0741.1 7.232243225626878 + +chr1 11273093 11273103 KLF16_MA0741.1 10.412888069895981 + +chr1 11273100 11273110 KLF16_MA0741.1 7.765104173200751 + +chr1 11273139 11273149 KLF16_MA0741.1 11.515852214846262 + +chr1 11273449 11273459 KLF16_MA0741.1 7.252344905353884 + +chr1 11478820 11478830 KLF16_MA0741.1 8.140359893168750 - +chr1 11478913 11478923 KLF16_MA0741.1 7.453112111932186 - +chr1 11664152 11664162 KLF16_MA0741.1 7.018749719656233 - +chr1 11664319 11664329 KLF16_MA0741.1 8.434376817695338 - +chr1 11664521 11664531 KLF16_MA0741.1 7.765104173200752 - +chr1 11664528 11664538 KLF16_MA0741.1 7.736987989761118 - +chr1 11664561 11664571 KLF16_MA0741.1 7.868355060261059 - +chr1 11680762 11680772 KLF16_MA0741.1 7.304757036446317 + +chr1 11680817 11680827 KLF16_MA0741.1 7.736987989761117 + +chr1 11680972 11680982 KLF16_MA0741.1 7.057811571546559 + +chr1 11681010 11681020 KLF16_MA0741.1 8.001066306127822 + +chr1 11681023 11681033 KLF16_MA0741.1 8.224420281000445 + +chr1 11681194 11681204 KLF16_MA0741.1 9.968953942739031 + +chr1 11681251 11681261 KLF16_MA0741.1 10.934422443214990 - +chr1 11681266 11681276 KLF16_MA0741.1 8.941987659285074 - +chr1 11681646 11681656 KLF16_MA0741.1 7.941752802043891 + +chr1 11736115 11736125 KLF16_MA0741.1 7.252344905353886 - +chr1 11736120 11736130 KLF16_MA0741.1 7.252344905353886 - +chr1 11736250 11736260 KLF16_MA0741.1 9.547582420435779 - +chr1 11805797 11805807 KLF16_MA0741.1 8.621542123034851 + +chr1 11805947 11805957 KLF16_MA0741.1 8.140359893168750 - +chr1 11805967 11805977 KLF16_MA0741.1 7.369051724100491 - +chr1 11806043 11806053 KLF16_MA0741.1 11.515852214846262 + +chr1 11806415 11806425 KLF16_MA0741.1 10.338968728761943 - +chr1 11908708 11908718 KLF16_MA0741.1 9.348097136943817 + +chr1 11908995 11909005 KLF16_MA0741.1 8.582113919959816 + +chr1 11926287 11926297 KLF16_MA0741.1 7.334403181602675 + +chr1 11926512 11926522 KLF16_MA0741.1 7.941752802043891 - +chr1 11926550 11926560 KLF16_MA0741.1 8.885007536625153 - +chr1 11934645 11934655 KLF16_MA0741.1 7.143613597119290 - +chr1 11934655 11934665 KLF16_MA0741.1 9.161010573738022 - +chr1 11934873 11934883 KLF16_MA0741.1 7.782043391674872 - +chr1 11980133 11980143 KLF16_MA0741.1 11.515852214846262 + +chr1 11980233 11980243 KLF16_MA0741.1 8.230023932707057 - +chr1 11980248 11980258 KLF16_MA0741.1 8.230023932707057 - +chr1 11980312 11980322 KLF16_MA0741.1 7.713425455492980 - +chr1 12019388 12019398 KLF16_MA0741.1 8.885007536625153 + +chr1 12047698 12047708 KLF16_MA0741.1 7.286925288629783 + +chr1 12079030 12079040 KLF16_MA0741.1 7.774170550958811 - +chr1 12079395 12079405 KLF16_MA0741.1 8.036329866371963 + +chr1 13700350 13700360 KLF16_MA0741.1 7.498167513845940 + +chr1 13700432 13700442 KLF16_MA0741.1 8.258522363080125 + +chr1 13749297 13749307 KLF16_MA0741.1 11.515852214846262 + +chr1 13749523 13749533 KLF16_MA0741.1 8.313094500346683 + +chr1 14599568 14599578 KLF16_MA0741.1 8.434376817695336 + +chr1 14913794 14913804 KLF16_MA0741.1 8.040112351403579 - 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KLF16_MA0741.1 7.678776676303903 - +chr1 15835975 15835985 KLF16_MA0741.1 7.555147636505860 + +chr1 15836042 15836052 KLF16_MA0741.1 9.245070961569720 - +chr1 15847772 15847782 KLF16_MA0741.1 7.316303613458575 + +chr1 15847986 15847996 KLF16_MA0741.1 7.018749719656233 + +chr1 15975735 15975745 KLF16_MA0741.1 7.155558218129844 + +chr1 15975875 15975885 KLF16_MA0741.1 8.224420281000445 + +chr1 16013007 16013017 KLF16_MA0741.1 7.941752802043891 - +chr1 16013037 16013047 KLF16_MA0741.1 7.553055417306140 + +chr1 16013185 16013195 KLF16_MA0741.1 7.221157217397201 - +chr1 16206554 16206564 KLF16_MA0741.1 7.252344905353884 + +chr1 16206581 16206591 KLF16_MA0741.1 10.526134034101457 + +chr1 16206599 16206609 KLF16_MA0741.1 7.414107126014244 + +chr1 16206709 16206719 KLF16_MA0741.1 7.941752802043891 + +chr1 16206909 16206919 KLF16_MA0741.1 8.475718428595188 + +chr1 16217428 16217438 KLF16_MA0741.1 10.044951804235353 + +chr1 16217469 16217479 KLF16_MA0741.1 10.526134034101457 + +chr1 16217594 16217604 KLF16_MA0741.1 7.577305097574988 + +chr1 16217636 16217646 KLF16_MA0741.1 10.044951804235353 + +chr1 16217650 16217660 KLF16_MA0741.1 7.369051724100490 + +chr1 16217655 16217665 KLF16_MA0741.1 7.316303613458575 + +chr1 16352995 16353005 KLF16_MA0741.1 7.526260150153466 - +chr1 16367225 16367235 KLF16_MA0741.1 9.236004583811662 - +chr1 16367769 16367779 KLF16_MA0741.1 7.031521043987133 - +chr1 16440911 16440921 KLF16_MA0741.1 9.681541095634344 + +chr1 16499120 16499130 KLF16_MA0741.1 7.591777198097857 + +chr1 16499262 16499272 KLF16_MA0741.1 7.252344905353886 - +chr1 16499299 16499309 KLF16_MA0741.1 7.941752802043891 - +chr1 16613590 16613600 KLF16_MA0741.1 9.387524171107760 - +chr1 16914001 16914011 KLF16_MA0741.1 7.597185177184964 + +chr1 16914040 16914050 KLF16_MA0741.1 7.941752802043891 + +chr1 16914166 16914176 KLF16_MA0741.1 8.885007536625153 - +chr1 16914210 16914220 KLF16_MA0741.1 7.591777198097857 - +chr1 17011816 17011826 KLF16_MA0741.1 7.956010904214067 - +chr1 17011883 17011893 KLF16_MA0741.1 7.399374181098201 - +chr1 17054037 17054047 KLF16_MA0741.1 8.868068318151032 + +chr1 17054297 17054307 KLF16_MA0741.1 10.338968728761943 - +chr1 17437893 17437903 KLF16_MA0741.1 10.129012192067052 - +chr1 17437918 17437928 KLF16_MA0741.1 11.515852214846262 - +chr1 17437956 17437966 KLF16_MA0741.1 10.129012192067050 + +chr1 17438576 17438586 KLF16_MA0741.1 8.224420281000446 - +chr1 18902475 18902485 KLF16_MA0741.1 7.414107126014246 - +chr1 18956693 18956703 KLF16_MA0741.1 10.526134034101457 + +chr1 18956715 18956725 KLF16_MA0741.1 11.515852214846262 + +chr1 18956732 18956742 KLF16_MA0741.1 10.526134034101457 + +chr1 18956806 18956816 KLF16_MA0741.1 9.349250548017135 + +chr1 18956892 18956902 KLF16_MA0741.1 9.048205508185895 + +chr1 19209823 19209833 KLF16_MA0741.1 9.048205508185895 + +chr1 19210025 19210035 KLF16_MA0741.1 8.224420281000445 + +chr1 19312156 19312166 KLF16_MA0741.1 9.055233623490548 + +chr1 19312192 19312202 KLF16_MA0741.1 9.611260303779657 - +chr1 19312258 19312268 KLF16_MA0741.1 11.515852214846262 - +chr1 19312282 19312292 KLF16_MA0741.1 7.157242302984895 - +chr1 19485318 19485328 KLF16_MA0741.1 9.161010573738022 + +chr1 19485323 19485333 KLF16_MA0741.1 10.129012192067050 + +chr1 19485372 19485382 KLF16_MA0741.1 9.026048047116770 - +chr1 19485552 19485562 KLF16_MA0741.1 9.026048047116769 + +chr1 19485609 19485619 KLF16_MA0741.1 8.475718428595188 + +chr1 19485711 19485721 KLF16_MA0741.1 11.515852214846262 - +chr1 19485730 19485740 KLF16_MA0741.1 7.252344905353886 - +chr1 19799725 19799735 KLF16_MA0741.1 8.134485188937413 - +chr1 19799928 19799938 KLF16_MA0741.1 8.658111781456141 + +chr1 19800038 19800048 KLF16_MA0741.1 7.736987989761118 - +chr1 19800105 19800115 KLF16_MA0741.1 7.526260150153466 + +chr1 20633429 20633439 KLF16_MA0741.1 10.526134034101457 + +chr1 20633983 20633993 KLF16_MA0741.1 10.934422443214990 - +chr1 20634005 20634015 KLF16_MA0741.1 11.515852214846262 - +chr1 20634023 20634033 KLF16_MA0741.1 8.703143636237787 - +chr1 20661675 20661685 KLF16_MA0741.1 7.782043391674872 + +chr1 20696696 20696706 KLF16_MA0741.1 8.868068318151032 + +chr1 20786692 20786702 KLF16_MA0741.1 8.475718428595188 - +chr1 20787074 20787084 KLF16_MA0741.1 11.515852214846262 + +chr1 20787311 20787321 KLF16_MA0741.1 11.515852214846262 + +chr1 20787352 20787362 KLF16_MA0741.1 8.703143636237787 + +chr1 21176464 21176474 KLF16_MA0741.1 8.001066306127822 - +chr1 21176505 21176515 KLF16_MA0741.1 7.221157217397201 - +chr1 21176675 21176685 KLF16_MA0741.1 7.814446398398341 - +chr1 21293813 21293823 KLF16_MA0741.1 9.160006722315336 + +chr1 21293867 21293877 KLF16_MA0741.1 10.129012192067052 - +chr1 21294073 21294083 KLF16_MA0741.1 7.071240014766837 + +chr1 21294831 21294841 KLF16_MA0741.1 7.871322022101574 + +chr1 21345547 21345557 KLF16_MA0741.1 10.044951804235355 - +chr1 21762633 21762643 KLF16_MA0741.1 7.018749719656233 - +chr1 21791708 21791718 KLF16_MA0741.1 9.681541095634346 - +chr1 21866194 21866204 KLF16_MA0741.1 10.338968728761943 - +chr1 22052590 22052600 KLF16_MA0741.1 7.015755405553691 + +chr1 22052874 22052884 KLF16_MA0741.1 8.002598725064459 - +chr1 22053080 22053090 KLF16_MA0741.1 8.224420281000445 + +chr1 22053259 22053269 KLF16_MA0741.1 9.236004583811662 - +chr1 22053267 22053277 KLF16_MA0741.1 10.412888069895981 - +chr1 22053273 22053283 KLF16_MA0741.1 8.224420281000446 - +chr1 22053278 22053288 KLF16_MA0741.1 9.571832100704626 - +chr1 22451791 22451801 KLF16_MA0741.1 11.515852214846262 + +chr1 22451838 22451848 KLF16_MA0741.1 7.555147636505860 + +chr1 22452329 22452339 KLF16_MA0741.1 7.308923688144141 + +chr1 23019403 23019413 KLF16_MA0741.1 10.129012192067052 - +chr1 23019408 23019418 KLF16_MA0741.1 10.044951804235355 - +chr1 23019752 23019762 KLF16_MA0741.1 7.157242302984895 - +chr1 23019810 23019820 KLF16_MA0741.1 7.868355060261059 - +chr1 23168861 23168871 KLF16_MA0741.1 10.044951804235355 - +chr1 23343993 23344003 KLF16_MA0741.1 8.941987659285074 - +chr1 23344089 23344099 KLF16_MA0741.1 8.434376817695336 + +chr1 23344091 23344101 KLF16_MA0741.1 8.106384802562642 + +chr1 23344178 23344188 KLF16_MA0741.1 10.129012192067050 + +chr1 23344295 23344305 KLF16_MA0741.1 9.026048047116769 + +chr1 23344691 23344701 KLF16_MA0741.1 11.515852214846262 + +chr1 23368205 23368215 KLF16_MA0741.1 7.553055417306140 + +chr1 23368870 23368880 KLF16_MA0741.1 10.526134034101457 + +chr1 23484241 23484251 KLF16_MA0741.1 10.044951804235353 + +chr1 23484258 23484268 KLF16_MA0741.1 11.515852214846262 + +chr1 23484305 23484315 KLF16_MA0741.1 11.515852214846262 + +chr1 23484416 23484426 KLF16_MA0741.1 12.429572534094744 + +chr1 23484445 23484455 KLF16_MA0741.1 10.631910984348931 + +chr1 23484465 23484475 KLF16_MA0741.1 8.868068318151032 + +chr1 23484683 23484693 KLF16_MA0741.1 9.315125897760399 + +chr1 23554981 23554991 KLF16_MA0741.1 10.044951804235355 - +chr1 23554997 23555007 KLF16_MA0741.1 8.703143636237787 - +chr1 23559578 23559588 KLF16_MA0741.1 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KLF16_MA0741.1 11.252689048010422 + +chr1 23838721 23838731 KLF16_MA0741.1 11.252689048010422 + +chr1 23838723 23838733 KLF16_MA0741.1 7.043772801065268 + +chr1 23867926 23867936 KLF16_MA0741.1 7.127059787756775 + +chr1 23868087 23868097 KLF16_MA0741.1 7.045534494304841 + +chr1 23909022 23909032 KLF16_MA0741.1 8.224420281000446 - +chr1 23959108 23959118 KLF16_MA0741.1 7.444658636950529 - +chr1 23959328 23959338 KLF16_MA0741.1 9.160006722315337 - +chr1 23959685 23959695 KLF16_MA0741.1 7.526260150153466 + +chr1 23980097 23980107 KLF16_MA0741.1 8.224420281000445 + +chr1 23980536 23980546 KLF16_MA0741.1 7.642990509369171 + +chr1 24643123 24643133 KLF16_MA0741.1 7.591777198097857 + +chr1 24643203 24643213 KLF16_MA0741.1 7.372754283644908 - +chr1 24643481 24643491 KLF16_MA0741.1 7.600952892427694 + +chr1 24643482 24643492 KLF16_MA0741.1 8.401405578511916 + +chr1 24643483 24643493 KLF16_MA0741.1 8.182382664058967 + +chr1 24643484 24643494 KLF16_MA0741.1 8.182382664058967 + +chr1 24643485 24643495 KLF16_MA0741.1 8.182382664058967 + +chr1 24643486 24643496 KLF16_MA0741.1 8.182382664058967 + +chr1 24745162 24745172 KLF16_MA0741.1 12.429572534094744 + +chr1 24745244 24745254 KLF16_MA0741.1 12.429572534094744 + +chr1 24745325 24745335 KLF16_MA0741.1 11.515852214846262 + +chr1 24745393 24745403 KLF16_MA0741.1 11.326608389144464 - +chr1 24930320 24930330 KLF16_MA0741.1 7.252344905353886 - +chr1 24965060 24965070 KLF16_MA0741.1 8.434376817695338 - +chr1 24965409 24965419 KLF16_MA0741.1 11.439854353349940 - +chr1 25022452 25022462 KLF16_MA0741.1 7.600179491287506 - +chr1 25232564 25232574 KLF16_MA0741.1 10.044951804235353 + +chr1 25233232 25233242 KLF16_MA0741.1 7.127059787756775 + +chr1 25247528 25247538 KLF16_MA0741.1 7.850233953966593 - +chr1 25338013 25338023 KLF16_MA0741.1 7.183674401569478 + +chr1 25338256 25338266 KLF16_MA0741.1 11.439854353349940 - +chr1 25338283 25338293 KLF16_MA0741.1 8.134485188937413 + +chr1 25338390 25338400 KLF16_MA0741.1 7.308923688144143 - +chr1 25430241 25430251 KLF16_MA0741.1 7.252344905353886 - +chr1 25430742 25430752 KLF16_MA0741.1 8.579580802106751 - +chr1 25430847 25430857 KLF16_MA0741.1 8.703143636237787 - +chr1 25430953 25430963 KLF16_MA0741.1 9.026048047116769 + +chr1 25543520 25543530 KLF16_MA0741.1 8.839952134711400 - +chr1 25543537 25543547 KLF16_MA0741.1 11.515852214846262 - +chr1 25543560 25543570 KLF16_MA0741.1 7.252344905353884 + +chr1 25543765 25543775 KLF16_MA0741.1 7.157242302984895 - +chr1 25549756 25549766 KLF16_MA0741.1 7.136211014262363 - +chr1 25616528 25616538 KLF16_MA0741.1 7.031521043987133 + +chr1 25616608 25616618 KLF16_MA0741.1 8.134485188937413 - +chr1 25616656 25616666 KLF16_MA0741.1 11.515852214846262 + +chr1 25616710 25616720 KLF16_MA0741.1 7.736987989761118 - +chr1 25616729 25616739 KLF16_MA0741.1 11.439854353349940 - +chr1 25616742 25616752 KLF16_MA0741.1 8.313094500346685 - +chr1 25616765 25616775 KLF16_MA0741.1 8.703143636237787 - +chr1 25819637 25819647 KLF16_MA0741.1 9.200358865768242 + 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KLF16_MA0741.1 7.819202405740455 + +chr1 26336469 26336479 KLF16_MA0741.1 11.515852214846262 + +chr1 26336487 26336497 KLF16_MA0741.1 7.597185177184964 + +chr1 26336536 26336546 KLF16_MA0741.1 11.515852214846262 - +chr1 26336579 26336589 KLF16_MA0741.1 11.515852214846262 + +chr1 26432271 26432281 KLF16_MA0741.1 10.377242351852566 - +chr1 26472304 26472314 KLF16_MA0741.1 9.236004583811660 + +chr1 26472341 26472351 KLF16_MA0741.1 7.411687397767110 + +chr1 26472349 26472359 KLF16_MA0741.1 9.568295131428869 + +chr1 26472351 26472361 KLF16_MA0741.1 7.043772801065268 + +chr1 26472392 26472402 KLF16_MA0741.1 9.642192803604125 + +chr1 26472907 26472917 KLF16_MA0741.1 9.026048047116769 + +chr1 26473040 26473050 KLF16_MA0741.1 10.044951804235355 - +chr1 26473063 26473073 KLF16_MA0741.1 11.515852214846262 + +chr1 26500987 26500997 KLF16_MA0741.1 7.252344905353886 - +chr1 26501004 26501014 KLF16_MA0741.1 11.515852214846262 - +chr1 26620511 26620521 KLF16_MA0741.1 8.224420281000445 + +chr1 26620585 26620595 KLF16_MA0741.1 10.745178617513192 - +chr1 26620608 26620618 KLF16_MA0741.1 9.245070961569716 + +chr1 26621012 26621022 KLF16_MA0741.1 8.224420281000446 - +chr1 26744074 26744084 KLF16_MA0741.1 8.434376817695336 + +chr1 26787886 26787896 KLF16_MA0741.1 8.703143636237787 - +chr1 26788129 26788139 KLF16_MA0741.1 10.044951804235353 + +chr1 26826660 26826670 KLF16_MA0741.1 7.941752802043891 - +chr1 26865130 26865140 KLF16_MA0741.1 8.703143636237787 - +chr1 27155010 27155020 KLF16_MA0741.1 9.493301121355231 + +chr1 27234836 27234846 KLF16_MA0741.1 7.221157217397201 + +chr1 27235145 27235155 KLF16_MA0741.1 10.631910984348931 - +chr1 27322054 27322064 KLF16_MA0741.1 7.597185177184966 - +chr1 27357641 27357651 KLF16_MA0741.1 9.611260303779657 - +chr1 27365609 27365619 KLF16_MA0741.1 10.044951804235353 + +chr1 27365642 27365652 KLF16_MA0741.1 8.140359893168748 + +chr1 27365653 27365663 KLF16_MA0741.1 7.150641712423941 + +chr1 27365896 27365906 KLF16_MA0741.1 7.984127087653699 + +chr1 27365935 27365945 KLF16_MA0741.1 7.597185177184964 + +chr1 27490105 27490115 KLF16_MA0741.1 8.855473121292372 + +chr1 27490206 27490216 KLF16_MA0741.1 9.349250548017135 + +chr1 27568497 27568507 KLF16_MA0741.1 8.140359893168748 + +chr1 27568588 27568598 KLF16_MA0741.1 8.475718428595188 - +chr1 27568647 27568657 KLF16_MA0741.1 9.161010573738022 - +chr1 27568668 27568678 KLF16_MA0741.1 8.466775736554622 + +chr1 27568793 27568803 KLF16_MA0741.1 8.621542123034851 - +chr1 27626600 27626610 KLF16_MA0741.1 8.106384802562644 - +chr1 27626602 27626612 KLF16_MA0741.1 9.236004583811662 - +chr1 27660116 27660126 KLF16_MA0741.1 10.262970867265619 - +chr1 27773166 27773176 KLF16_MA0741.1 8.134485188937413 - +chr1 27773447 27773457 KLF16_MA0741.1 7.782043391674872 - +chr1 27830707 27830717 KLF16_MA0741.1 8.260206447935175 + +chr1 27872612 27872622 KLF16_MA0741.1 7.819202405740455 + +chr1 27959938 27959948 KLF16_MA0741.1 7.895289355880347 + +chr1 28088767 28088777 KLF16_MA0741.1 9.968953942739031 + 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KLF16_MA0741.1 10.044951804235353 + +chr1 29230997 29231007 KLF16_MA0741.1 10.158791280818200 + +chr1 30718186 30718196 KLF16_MA0741.1 8.134485188937413 + +chr1 30718204 30718214 KLF16_MA0741.1 11.515852214846262 + +chr1 30718413 30718423 KLF16_MA0741.1 11.515852214846262 + +chr1 30718435 30718445 KLF16_MA0741.1 7.252344905353884 + +chr1 30718486 30718496 KLF16_MA0741.1 7.252344905353884 + +chr1 30718542 30718552 KLF16_MA0741.1 7.252344905353884 + +chr1 30718589 30718599 KLF16_MA0741.1 9.285346809009248 + +chr1 30718601 30718611 KLF16_MA0741.1 10.044951804235353 + +chr1 30718670 30718680 KLF16_MA0741.1 7.252344905353884 + +chr1 30718710 30718720 KLF16_MA0741.1 7.941752802043891 + +chr1 30719307 30719317 KLF16_MA0741.1 10.958672123483836 + +chr1 31065398 31065408 KLF16_MA0741.1 8.434376817695336 + +chr1 31154958 31154968 KLF16_MA0741.1 10.412888069895981 - +chr1 31154964 31154974 KLF16_MA0741.1 11.515852214846262 - +chr1 31155004 31155014 KLF16_MA0741.1 8.134485188937413 - +chr1 31155182 31155192 KLF16_MA0741.1 10.149724903060143 - +chr1 31155197 31155207 KLF16_MA0741.1 10.149724903060143 - +chr1 31606057 31606067 KLF16_MA0741.1 8.325407717015594 - +chr1 31644891 31644901 KLF16_MA0741.1 8.868068318151034 - +chr1 31644914 31644924 KLF16_MA0741.1 8.579580802106747 + +chr1 31645011 31645021 KLF16_MA0741.1 7.157242302984895 - +chr1 31788702 31788712 KLF16_MA0741.1 9.798727855873635 + +chr1 31788799 31788809 KLF16_MA0741.1 9.236004583811662 - +chr1 31788805 31788815 KLF16_MA0741.1 8.444618275485498 - +chr1 31789268 31789278 KLF16_MA0741.1 10.631910984348931 + +chr1 31789313 31789323 KLF16_MA0741.1 10.338968728761941 + +chr1 31938481 31938491 KLF16_MA0741.1 7.486000247850384 + +chr1 31938648 31938658 KLF16_MA0741.1 9.055233623490548 + +chr1 32013509 32013519 KLF16_MA0741.1 9.048205508185896 - +chr1 32013586 32013596 KLF16_MA0741.1 7.782043391674872 + +chr1 32014227 32014237 KLF16_MA0741.1 7.486000247850384 - +chr1 32073157 32073167 KLF16_MA0741.1 8.224420281000446 - 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KLF16_MA0741.1 8.134485188937413 - +chr1 33180820 33180830 KLF16_MA0741.1 11.515852214846262 + +chr1 33180850 33180860 KLF16_MA0741.1 10.044951804235353 + +chr1 33180905 33180915 KLF16_MA0741.1 7.597185177184964 + +chr1 33180955 33180965 KLF16_MA0741.1 9.455027498264609 + +chr1 33180972 33180982 KLF16_MA0741.1 7.526260150153466 + +chr1 33180989 33180999 KLF16_MA0741.1 10.044951804235353 + +chr1 33181741 33181751 KLF16_MA0741.1 11.515852214846262 - +chr1 33181829 33181839 KLF16_MA0741.1 8.260206447935175 - +chr1 33181873 33181883 KLF16_MA0741.1 9.026048047116770 - +chr1 33349572 33349582 KLF16_MA0741.1 9.245070961569716 + +chr1 33349936 33349946 KLF16_MA0741.1 11.515852214846262 - +chr1 33349964 33349974 KLF16_MA0741.1 10.044951804235355 - +chr1 33349981 33349991 KLF16_MA0741.1 10.044951804235355 - +chr1 33430820 33430830 KLF16_MA0741.1 7.252344905353884 + +chr1 33431035 33431045 KLF16_MA0741.1 7.591777198097857 + +chr1 33431092 33431102 KLF16_MA0741.1 7.316303613458575 - +chr1 33472433 33472443 KLF16_MA0741.1 8.885007536625153 + +chr1 33472768 33472778 KLF16_MA0741.1 7.221157217397201 - +chr1 34859682 34859692 KLF16_MA0741.1 7.334403181602675 + +chr1 34985343 34985353 KLF16_MA0741.1 8.579580802106747 + +chr1 35031288 35031298 KLF16_MA0741.1 7.765104173200752 - +chr1 35031606 35031616 KLF16_MA0741.1 7.479149775009536 + +chr1 35031732 35031742 KLF16_MA0741.1 8.260206447935175 + +chr1 35031783 35031793 KLF16_MA0741.1 7.895289355880347 + +chr1 35079250 35079260 KLF16_MA0741.1 8.224420281000445 + +chr1 35079365 35079375 KLF16_MA0741.1 9.161010573738022 - +chr1 35192086 35192096 KLF16_MA0741.1 11.515852214846262 + +chr1 35192152 35192162 KLF16_MA0741.1 10.412888069895981 - +chr1 35192514 35192524 KLF16_MA0741.1 7.556039238904617 - +chr1 35192649 35192659 KLF16_MA0741.1 7.399374181098201 - +chr1 35193190 35193200 KLF16_MA0741.1 7.713425455492980 + +chr1 35268640 35268650 KLF16_MA0741.1 8.353900451098632 - +chr1 35268970 35268980 KLF16_MA0741.1 9.423169889151175 - +chr1 35269117 35269127 KLF16_MA0741.1 11.515852214846262 - +chr1 35557149 35557159 KLF16_MA0741.1 8.658111781456141 + +chr1 35557470 35557480 KLF16_MA0741.1 10.129012192067050 + +chr1 35557513 35557523 KLF16_MA0741.1 7.316303613458575 - +chr1 35557628 35557638 KLF16_MA0741.1 7.221157217397201 + +chr1 35557762 35557772 KLF16_MA0741.1 9.236004583811662 - +chr1 35557766 35557776 KLF16_MA0741.1 7.304757036446319 - +chr1 35769825 35769835 KLF16_MA0741.1 10.745178617513192 - +chr1 35770047 35770057 KLF16_MA0741.1 9.611260303779657 + +chr1 35883116 35883126 KLF16_MA0741.1 8.941987659285072 + +chr1 35930699 35930709 KLF16_MA0741.1 7.176347043857562 - +chr1 35930853 35930863 KLF16_MA0741.1 8.260206447935175 + +chr1 35931405 35931415 KLF16_MA0741.1 7.118657494567126 + +chr1 36089116 36089126 KLF16_MA0741.1 10.526134034101457 - +chr1 36149303 36149313 KLF16_MA0741.1 7.399374181098201 + +chr1 36149389 36149399 KLF16_MA0741.1 7.597185177184964 + +chr1 36149755 36149765 KLF16_MA0741.1 9.026048047116769 + 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KLF16_MA0741.1 7.591777198097857 + +chr1 37990174 37990184 KLF16_MA0741.1 7.556039238904617 - +chr1 38028414 38028424 KLF16_MA0741.1 7.774170550958811 - +chr1 38047064 38047074 KLF16_MA0741.1 8.839952134711400 - +chr1 38047082 38047092 KLF16_MA0741.1 7.124065473654237 - +chr1 38859378 38859388 KLF16_MA0741.1 10.412888069895981 - +chr1 38859745 38859755 KLF16_MA0741.1 7.157242302984895 + +chr1 38859773 38859783 KLF16_MA0741.1 8.475718428595188 + +chr1 38873162 38873172 KLF16_MA0741.1 7.819202405740455 + +chr1 38873218 38873228 KLF16_MA0741.1 8.950050185620444 + +chr1 38873275 38873285 KLF16_MA0741.1 8.839952134711398 + +chr1 38990972 38990982 KLF16_MA0741.1 8.224420281000445 + +chr1 38990980 38990990 KLF16_MA0741.1 7.210130355396402 + +chr1 38991064 38991074 KLF16_MA0741.1 8.941987659285074 - +chr1 38991070 38991080 KLF16_MA0741.1 9.236004583811662 - +chr1 38991074 38991084 KLF16_MA0741.1 8.106384802562644 - +chr1 38991076 38991086 KLF16_MA0741.1 9.236004583811662 - +chr1 38991653 38991663 KLF16_MA0741.1 9.315125897760399 - +chr1 38991664 38991674 KLF16_MA0741.1 8.663641189938446 - +chr1 39408668 39408678 KLF16_MA0741.1 8.134485188937413 - +chr1 39408753 39408763 KLF16_MA0741.1 11.515852214846262 - +chr1 39408788 39408798 KLF16_MA0741.1 10.336890208399659 - +chr1 39408926 39408936 KLF16_MA0741.1 11.515852214846262 + +chr1 39408942 39408952 KLF16_MA0741.1 11.515852214846262 + +chr1 39408948 39408958 KLF16_MA0741.1 7.031521043987133 + +chr1 39491550 39491560 KLF16_MA0741.1 11.515852214846262 + +chr1 39491558 39491568 KLF16_MA0741.1 7.736987989761117 + +chr1 39576118 39576128 KLF16_MA0741.1 7.600179491287506 - +chr1 39738802 39738812 KLF16_MA0741.1 9.642192803604125 - +chr1 39738829 39738839 KLF16_MA0741.1 11.515852214846262 - +chr1 39738985 39738995 KLF16_MA0741.1 7.063101079652088 - +chr1 39788892 39788902 KLF16_MA0741.1 7.372754283644908 + +chr1 39788923 39788933 KLF16_MA0741.1 10.412888069895981 - +chr1 39788929 39788939 KLF16_MA0741.1 11.515852214846262 - 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KLF16_MA0741.1 9.161010573738022 + +chr1 40862525 40862535 KLF16_MA0741.1 8.510905496433447 + +chr1 40979550 40979560 KLF16_MA0741.1 7.225975884185464 + +chr1 40979641 40979651 KLF16_MA0741.1 7.252344905353884 + +chr1 40979646 40979656 KLF16_MA0741.1 7.252344905353884 + +chr1 40980182 40980192 KLF16_MA0741.1 7.667240189638020 - +chr1 40980199 40980209 KLF16_MA0741.1 7.192664483314162 + +chr1 41241446 41241456 KLF16_MA0741.1 8.324121362347482 + +chr1 41241812 41241822 KLF16_MA0741.1 7.399374181098201 + +chr1 41242072 41242082 KLF16_MA0741.1 7.736987989761118 - +chr1 41242146 41242156 KLF16_MA0741.1 7.372754283644908 - +chr1 41242224 41242234 KLF16_MA0741.1 11.515852214846262 - +chr1 41242248 41242258 KLF16_MA0741.1 10.129012192067050 + +chr1 41242308 41242318 KLF16_MA0741.1 11.515852214846262 - +chr1 41361053 41361063 KLF16_MA0741.1 7.597185177184964 + +chr1 41361166 41361176 KLF16_MA0741.1 7.116742917831213 - +chr1 41361180 41361190 KLF16_MA0741.1 7.941752802043891 + +chr1 41361196 41361206 KLF16_MA0741.1 7.600179491287506 + +chr1 41361217 41361227 KLF16_MA0741.1 10.631910984348931 - +chr1 41361331 41361341 KLF16_MA0741.1 7.399374181098201 - +chr1 41361381 41361391 KLF16_MA0741.1 11.515852214846262 + +chr1 41361402 41361412 KLF16_MA0741.1 8.475718428595188 + +chr1 41361420 41361430 KLF16_MA0741.1 7.952269478540266 + +chr1 41662598 41662608 KLF16_MA0741.1 8.076682009824870 - +chr1 41727589 41727599 KLF16_MA0741.1 7.369051724100491 - +chr1 41728530 41728540 KLF16_MA0741.1 8.658111781456142 - +chr1 41752057 41752067 KLF16_MA0741.1 7.150943959178408 - +chr1 41920063 41920073 KLF16_MA0741.1 7.454900094740690 + +chr1 42035674 42035684 KLF16_MA0741.1 8.885007536625153 + +chr1 42035946 42035956 KLF16_MA0741.1 8.703143636237787 + +chr1 42035966 42035976 KLF16_MA0741.1 11.515852214846262 + +chr1 42035995 42036005 KLF16_MA0741.1 8.703143636237787 + +chr1 42036087 42036097 KLF16_MA0741.1 7.713425455492980 + +chr1 42036098 42036108 KLF16_MA0741.1 8.140359893168748 + +chr1 42334777 42334787 KLF16_MA0741.1 10.129012192067052 - +chr1 42335004 42335014 KLF16_MA0741.1 8.703143636237787 + +chr1 42335597 42335607 KLF16_MA0741.1 10.412888069895981 + +chr1 42456510 42456520 KLF16_MA0741.1 10.958672123483838 - +chr1 42463143 42463153 KLF16_MA0741.1 7.057811571546559 + +chr1 42658327 42658337 KLF16_MA0741.1 7.941752802043891 - +chr1 42682615 42682625 KLF16_MA0741.1 7.031521043987133 + +chr1 42682751 42682761 KLF16_MA0741.1 10.338968728761943 - +chr1 42682923 42682933 KLF16_MA0741.1 7.736987989761117 + +chr1 42682956 42682966 KLF16_MA0741.1 10.129012192067050 + +chr1 42767039 42767049 KLF16_MA0741.1 8.475718428595188 + +chr1 42767172 42767182 KLF16_MA0741.1 8.703143636237787 + +chr1 42817045 42817055 KLF16_MA0741.1 8.475718428595188 + +chr1 42817107 42817117 KLF16_MA0741.1 7.600179491287506 + +chr1 42817333 42817343 KLF16_MA0741.1 10.129012192067052 - +chr1 42817422 42817432 KLF16_MA0741.1 8.134485188937413 - +chr1 42817427 42817437 KLF16_MA0741.1 7.252344905353886 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KLF16_MA0741.1 11.252689048010424 - +chr1 44030091 44030101 KLF16_MA0741.1 7.663068648627077 - +chr1 44030304 44030314 KLF16_MA0741.1 11.515852214846262 + +chr1 44030363 44030373 KLF16_MA0741.1 11.515852214846262 + +chr1 44213490 44213500 KLF16_MA0741.1 10.158791280818200 - +chr1 44213673 44213683 KLF16_MA0741.1 11.515852214846262 + +chr1 44632412 44632422 KLF16_MA0741.1 10.338968728761941 + +chr1 44674117 44674127 KLF16_MA0741.1 7.232243225626878 - +chr1 44674163 44674173 KLF16_MA0741.1 10.044951804235355 - +chr1 44674231 44674241 KLF16_MA0741.1 8.134485188937413 - +chr1 44674248 44674258 KLF16_MA0741.1 10.044951804235355 - +chr1 44674610 44674620 KLF16_MA0741.1 10.044951804235353 + +chr1 44721748 44721758 KLF16_MA0741.1 8.465309317519804 + +chr1 44739686 44739696 KLF16_MA0741.1 11.252689048010424 - +chr1 44775526 44775536 KLF16_MA0741.1 10.044951804235355 - +chr1 44799910 44799920 KLF16_MA0741.1 8.990402329073353 - +chr1 44800198 44800208 KLF16_MA0741.1 7.819202405740455 - +chr1 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KLF16_MA0741.1 7.664856631435581 - +chr1 46062824 46062834 KLF16_MA0741.1 7.664856631435581 - +chr1 46198430 46198440 KLF16_MA0741.1 7.252344905353884 + +chr1 46198445 46198455 KLF16_MA0741.1 8.475718428595188 + +chr1 46247316 46247326 KLF16_MA0741.1 8.658111781456141 + +chr1 46247401 46247411 KLF16_MA0741.1 10.044951804235353 + +chr1 46247435 46247445 KLF16_MA0741.1 7.252344905353884 + +chr1 46247476 46247486 KLF16_MA0741.1 10.044951804235353 + +chr1 46247481 46247491 KLF16_MA0741.1 10.129012192067050 + +chr1 46247496 46247506 KLF16_MA0741.1 10.412888069895981 + +chr1 46247507 46247517 KLF16_MA0741.1 10.044951804235353 + +chr1 46247548 46247558 KLF16_MA0741.1 8.134485188937413 + +chr1 46302220 46302230 KLF16_MA0741.1 8.839952134711398 + +chr1 46302893 46302903 KLF16_MA0741.1 7.736987989761117 + +chr1 46303055 46303065 KLF16_MA0741.1 7.736987989761117 + +chr1 46442498 46442508 KLF16_MA0741.1 7.945241363235615 - +chr1 46603977 46603987 KLF16_MA0741.1 8.166065224602367 + +chr1 46604274 46604284 KLF16_MA0741.1 7.298834942510870 - +chr1 46604304 46604314 KLF16_MA0741.1 7.941752802043891 - +chr1 46616380 46616390 KLF16_MA0741.1 10.336890208399657 + +chr1 46616481 46616491 KLF16_MA0741.1 10.964201531966140 + +chr1 46616494 46616504 KLF16_MA0741.1 7.774170550958809 + +chr1 46616527 46616537 KLF16_MA0741.1 7.269571887185478 + +chr1 46668009 46668019 KLF16_MA0741.1 7.316303613458575 + +chr1 46668328 46668338 KLF16_MA0741.1 7.600179491287506 + +chr1 46719276 46719286 KLF16_MA0741.1 11.515852214846262 + +chr1 46719348 46719358 KLF16_MA0741.1 7.399374181098201 - +chr1 46719406 46719416 KLF16_MA0741.1 11.326608389144463 + +chr1 47314114 47314124 KLF16_MA0741.1 7.232243225626878 + +chr1 47314228 47314238 KLF16_MA0741.1 7.083322961850855 - +chr1 47333884 47333894 KLF16_MA0741.1 7.252344905353884 + +chr1 47437785 47437795 KLF16_MA0741.1 7.269571887185478 + +chr1 47438020 47438030 KLF16_MA0741.1 10.412888069895981 + +chr1 48472215 48472225 KLF16_MA0741.1 10.044951804235355 - +chr1 48472323 48472333 KLF16_MA0741.1 11.515852214846262 - +chr1 48472340 48472350 KLF16_MA0741.1 9.161010573738022 - +chr1 48730523 48730533 KLF16_MA0741.1 9.379029636768287 - +chr1 48793991 48794001 KLF16_MA0741.1 7.316303613458575 - +chr1 50333466 50333476 KLF16_MA0741.1 7.337016324451667 + +chr1 50724651 50724661 KLF16_MA0741.1 9.939768366365250 + +chr1 50959737 50959747 KLF16_MA0741.1 7.234702100255638 - +chr1 50959958 50959968 KLF16_MA0741.1 7.399374181098201 - +chr1 50960171 50960181 KLF16_MA0741.1 9.611260303779657 - +chr1 50968644 50968654 KLF16_MA0741.1 8.134485188937413 - +chr1 50968649 50968659 KLF16_MA0741.1 7.063101079652088 - +chr1 50968731 50968741 KLF16_MA0741.1 10.050481212717656 - +chr1 50977456 50977466 KLF16_MA0741.1 7.765104173200752 - +chr1 50977460 50977470 KLF16_MA0741.1 8.106384802562644 - +chr1 50977462 50977472 KLF16_MA0741.1 9.236004583811662 - +chr1 50977958 50977968 KLF16_MA0741.1 7.221157217397201 + +chr1 50978074 50978084 KLF16_MA0741.1 9.611260303779657 - 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53196739 KLF16_MA0741.1 10.526134034101457 - +chr1 53220243 53220253 KLF16_MA0741.1 7.252344905353884 + +chr1 53220349 53220359 KLF16_MA0741.1 7.088878405815978 - +chr1 53238665 53238675 KLF16_MA0741.1 8.703143636237787 - +chr1 53326265 53326275 KLF16_MA0741.1 11.252689048010424 - +chr1 53326276 53326286 KLF16_MA0741.1 7.252344905353886 - +chr1 53326573 53326583 KLF16_MA0741.1 8.621542123034851 + +chr1 53327546 53327556 KLF16_MA0741.1 9.237841681595963 + +chr1 53327561 53327571 KLF16_MA0741.1 9.245070961569716 + +chr1 53327617 53327627 KLF16_MA0741.1 10.412888069895981 - +chr1 53739064 53739074 KLF16_MA0741.1 9.274278206902283 + +chr1 53739088 53739098 KLF16_MA0741.1 8.839952134711398 + +chr1 53739231 53739241 KLF16_MA0741.1 8.475718428595188 - +chr1 53739311 53739321 KLF16_MA0741.1 8.134485188937413 - +chr1 53838114 53838124 KLF16_MA0741.1 7.088878405815977 + +chr1 53889845 53889855 KLF16_MA0741.1 8.703143636237787 + +chr1 53945417 53945427 KLF16_MA0741.1 7.712272044419662 + +chr1 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KLF16_MA0741.1 8.182382664058968 - +chr1 74732605 74732615 KLF16_MA0741.1 8.182382664058968 - +chr1 74732606 74732616 KLF16_MA0741.1 8.401405578511916 - +chr1 74732607 74732617 KLF16_MA0741.1 7.600952892427696 - +chr1 74811908 74811918 KLF16_MA0741.1 10.412888069895981 - +chr1 74811914 74811924 KLF16_MA0741.1 9.358338594733979 - +chr1 75724319 75724329 KLF16_MA0741.1 9.048205508185895 + +chr1 75724411 75724421 KLF16_MA0741.1 9.026048047116769 + +chr1 75724668 75724678 KLF16_MA0741.1 7.597185177184964 + +chr1 75724678 75724688 KLF16_MA0741.1 7.011348125383015 + +chr1 75724697 75724707 KLF16_MA0741.1 7.895289355880347 - +chr1 75724908 75724918 KLF16_MA0741.1 7.127059787756777 - +chr1 75745585 75745595 KLF16_MA0741.1 7.088878405815978 - +chr1 75784538 75784548 KLF16_MA0741.1 9.029830532148384 - +chr1 75785165 75785175 KLF16_MA0741.1 8.106384802562642 + +chr1 75909045 75909055 KLF16_MA0741.1 7.667240189638018 + +chr1 76074392 76074402 KLF16_MA0741.1 7.071240014766837 + +chr1 76074637 76074647 KLF16_MA0741.1 11.515852214846262 - +chr1 76074678 76074688 KLF16_MA0741.1 11.515852214846262 - +chr1 76074698 76074708 KLF16_MA0741.1 10.631910984348931 - +chr1 76270672 76270682 KLF16_MA0741.1 7.871322022101574 + +chr1 77282008 77282018 KLF16_MA0741.1 8.868068318151032 + +chr1 77683029 77683039 KLF16_MA0741.1 9.611260303779657 + +chr1 77759889 77759899 KLF16_MA0741.1 7.941752802043891 - +chr1 77759919 77759929 KLF16_MA0741.1 10.044951804235355 - +chr1 77779747 77779757 KLF16_MA0741.1 9.161010573738022 - +chr1 78649752 78649762 KLF16_MA0741.1 7.334403181602675 - +chr1 81801904 81801914 KLF16_MA0741.1 9.568295131428870 - +chr1 83999379 83999389 KLF16_MA0741.1 9.568295131428869 + +chr1 83999381 83999391 KLF16_MA0741.1 8.514673211676177 + +chr1 83999383 83999393 KLF16_MA0741.1 7.600952892427694 + +chr1 83999384 83999394 KLF16_MA0741.1 8.401405578511916 + +chr1 84077921 84077931 KLF16_MA0741.1 7.372754283644908 + +chr1 84078054 84078064 KLF16_MA0741.1 10.461302739684260 - +chr1 84078277 84078287 KLF16_MA0741.1 7.221157217397201 + +chr1 84298422 84298432 KLF16_MA0741.1 8.941987659285072 + +chr1 84298869 84298879 KLF16_MA0741.1 8.439980469401947 + +chr1 84505929 84505939 KLF16_MA0741.1 7.372754283644908 + +chr1 84505994 84506004 KLF16_MA0741.1 7.372754283644908 + +chr1 84506178 84506188 KLF16_MA0741.1 11.515852214846262 - +chr1 84506337 84506347 KLF16_MA0741.1 7.850233953966593 - +chr1 84506634 84506644 KLF16_MA0741.1 7.109591116809068 + +chr1 84574458 84574468 KLF16_MA0741.1 10.526134034101457 - +chr1 84574490 84574500 KLF16_MA0741.1 8.140359893168750 - +chr1 84574528 84574538 KLF16_MA0741.1 10.044951804235355 - +chr1 84574545 84574555 KLF16_MA0741.1 7.210130355396403 - +chr1 84621100 84621110 KLF16_MA0741.1 10.044951804235355 - +chr1 84690472 84690482 KLF16_MA0741.1 7.316303613458575 + +chr1 84690500 84690510 KLF16_MA0741.1 8.140359893168748 + +chr1 84690551 84690561 KLF16_MA0741.1 10.631910984348931 + +chr1 84690789 84690799 KLF16_MA0741.1 9.611260303779657 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KLF16_MA0741.1 8.097394720817961 + +chr1 85708215 85708225 KLF16_MA0741.1 7.663068648627077 + +chr1 86395890 86395900 KLF16_MA0741.1 7.440180131850150 - +chr1 86396334 86396344 KLF16_MA0741.1 8.868068318151032 + +chr1 86774291 86774301 KLF16_MA0741.1 7.316303613458575 + +chr1 86774532 86774542 KLF16_MA0741.1 10.412888069895981 + +chr1 86913740 86913750 KLF16_MA0741.1 8.036329866371963 + +chr1 86914540 86914550 KLF16_MA0741.1 10.129012192067052 - +chr1 86914545 86914555 KLF16_MA0741.1 10.044951804235355 - +chr1 86914608 86914618 KLF16_MA0741.1 7.952269478540266 - +chr1 86914614 86914624 KLF16_MA0741.1 9.611260303779657 - +chr1 86914866 86914876 KLF16_MA0741.1 9.026048047116770 - +chr1 86914993 86915003 KLF16_MA0741.1 9.611260303779657 + +chr1 87328324 87328334 KLF16_MA0741.1 7.782043391674872 + +chr1 87328823 87328833 KLF16_MA0741.1 10.412888069895981 - +chr1 87329249 87329259 KLF16_MA0741.1 9.831458298264709 - +chr1 87335143 87335153 KLF16_MA0741.1 9.236004583811660 + +chr1 87335233 87335243 KLF16_MA0741.1 7.304757036446317 + +chr1 87335569 87335579 KLF16_MA0741.1 9.236004583811662 - +chr1 88191990 88192000 KLF16_MA0741.1 8.036329866371963 - +chr1 88683709 88683719 KLF16_MA0741.1 7.440180131850150 - +chr1 88684109 88684119 KLF16_MA0741.1 11.515852214846262 + +chr1 88684720 88684730 KLF16_MA0741.1 7.369051724100490 + +chr1 88685007 88685017 KLF16_MA0741.1 7.252344905353884 + +chr1 88685076 88685086 KLF16_MA0741.1 7.498167513845940 + +chr1 88685082 88685092 KLF16_MA0741.1 7.555147636505860 + +chr1 88891127 88891137 KLF16_MA0741.1 7.736987989761118 - +chr1 88891930 88891940 KLF16_MA0741.1 10.631910984348931 + +chr1 88891937 88891947 KLF16_MA0741.1 7.221157217397201 + +chr1 88992666 88992676 KLF16_MA0741.1 7.941752802043891 - +chr1 88992783 88992793 KLF16_MA0741.1 8.658111781456142 - +chr1 88992827 88992837 KLF16_MA0741.1 11.515852214846262 - +chr1 88992946 88992956 KLF16_MA0741.1 7.765104173200752 - +chr1 89065393 89065403 KLF16_MA0741.1 7.673923009193639 - +chr1 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94541839 KLF16_MA0741.1 7.372754283644908 + +chr1 94541855 94541865 KLF16_MA0741.1 9.611260303779657 + +chr1 94541908 94541918 KLF16_MA0741.1 7.877196726332909 + +chr1 94541919 94541929 KLF16_MA0741.1 8.703143636237787 + +chr1 94720684 94720694 KLF16_MA0741.1 7.556039238904615 + +chr1 94854604 94854614 KLF16_MA0741.1 8.465309317519804 + +chr1 94854722 94854732 KLF16_MA0741.1 7.736987989761117 + +chr1 94854799 94854809 KLF16_MA0741.1 7.234702100255638 - +chr1 94927150 94927160 KLF16_MA0741.1 7.600179491287506 + +chr1 94927345 94927355 KLF16_MA0741.1 11.515852214846262 + +chr1 95116858 95116868 KLF16_MA0741.1 7.155558218129844 + +chr1 95117086 95117096 KLF16_MA0741.1 7.591777198097857 - +chr1 95117283 95117293 KLF16_MA0741.1 10.526134034101457 + +chr1 95234014 95234024 KLF16_MA0741.1 7.399374181098201 + +chr1 95234096 95234106 KLF16_MA0741.1 11.515852214846262 + +chr1 95234595 95234605 KLF16_MA0741.1 7.088878405815977 + +chr1 96721516 96721526 KLF16_MA0741.1 11.326608389144463 + +chr1 96721647 96721657 KLF16_MA0741.1 9.939768366365250 + +chr1 96722010 96722020 KLF16_MA0741.1 8.097394720817961 + +chr1 97138460 97138470 KLF16_MA0741.1 7.109576874678593 - +chr1 97921049 97921059 KLF16_MA0741.1 7.941752802043891 - +chr1 97921072 97921082 KLF16_MA0741.1 9.173926767183657 + +chr1 97921082 97921092 KLF16_MA0741.1 7.252344905353886 - +chr1 97921453 97921463 KLF16_MA0741.1 9.642192803604125 - +chr1 98054389 98054399 KLF16_MA0741.1 8.121713864606514 + +chr1 98054421 98054431 KLF16_MA0741.1 8.505497517346338 - +chr1 98871574 98871584 KLF16_MA0741.1 10.129012192067052 - +chr1 99759204 99759214 KLF16_MA0741.1 7.555147636505860 + +chr1 99759393 99759403 KLF16_MA0741.1 10.050481212717656 - +chr1 99850340 99850350 KLF16_MA0741.1 8.224420281000445 + +chr1 99970425 99970435 KLF16_MA0741.1 9.200358865768244 - +chr1 100038022 100038032 KLF16_MA0741.1 7.399374181098201 - +chr1 100038046 100038056 KLF16_MA0741.1 10.044951804235355 - +chr1 100038649 100038659 KLF16_MA0741.1 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103525636 KLF16_MA0741.1 7.252344905353884 + +chr1 103525643 103525653 KLF16_MA0741.1 7.252344905353884 + +chr1 103525660 103525670 KLF16_MA0741.1 7.252344905353884 + +chr1 103784099 103784109 KLF16_MA0741.1 7.526260150153466 + +chr1 103938136 103938146 KLF16_MA0741.1 7.526260150153466 - +chr1 106996554 106996564 KLF16_MA0741.1 8.434376817695336 + +chr1 107140275 107140285 KLF16_MA0741.1 7.386358549649255 + +chr1 107140428 107140438 KLF16_MA0741.1 9.611260303779657 - +chr1 107141261 107141271 KLF16_MA0741.1 7.706045530178548 + +chr1 107141529 107141539 KLF16_MA0741.1 8.434376817695336 + +chr1 107964635 107964645 KLF16_MA0741.1 8.703143636237787 - +chr1 107965278 107965288 KLF16_MA0741.1 8.134485188937413 - +chr1 107965291 107965301 KLF16_MA0741.1 10.129012192067052 - +chr1 107965334 107965344 KLF16_MA0741.1 7.736987989761117 + +chr1 108559808 108559818 KLF16_MA0741.1 9.236004583811662 - +chr1 108560309 108560319 KLF16_MA0741.1 8.839952134711398 + +chr1 108692547 108692557 KLF16_MA0741.1 9.026048047116769 + +chr1 108692961 108692971 KLF16_MA0741.1 8.246286403066854 - +chr1 108692985 108692995 KLF16_MA0741.1 7.386358549649255 - +chr1 108746626 108746636 KLF16_MA0741.1 10.338968728761943 - +chr1 108746651 108746661 KLF16_MA0741.1 10.044951804235355 - +chr1 108746969 108746979 KLF16_MA0741.1 8.171292392993216 - +chr1 108876821 108876831 KLF16_MA0741.1 8.134877536645682 + +chr1 108876887 108876897 KLF16_MA0741.1 7.252344905353884 + +chr1 108876892 108876902 KLF16_MA0741.1 7.252344905353884 + +chr1 108877093 108877103 KLF16_MA0741.1 7.782043391674872 - +chr1 108963500 108963510 KLF16_MA0741.1 7.498167513845940 + +chr1 109041681 109041691 KLF16_MA0741.1 7.221157217397201 + +chr1 109041704 109041714 KLF16_MA0741.1 7.145159355900875 + +chr1 109042231 109042241 KLF16_MA0741.1 7.252344905353886 - +chr1 109042236 109042246 KLF16_MA0741.1 7.252344905353886 - +chr1 109042251 109042261 KLF16_MA0741.1 9.054080212417233 - +chr1 109042288 109042298 KLF16_MA0741.1 10.044951804235355 - +chr1 109090938 109090948 KLF16_MA0741.1 7.399374181098201 - +chr1 109090969 109090979 KLF16_MA0741.1 9.611260303779657 + +chr1 109100348 109100358 KLF16_MA0741.1 7.316303613458575 + +chr1 109100718 109100728 KLF16_MA0741.1 10.129012192067050 + +chr1 109213788 109213798 KLF16_MA0741.1 10.336890208399657 + +chr1 109213825 109213835 KLF16_MA0741.1 8.703143636237787 + +chr1 109283154 109283164 KLF16_MA0741.1 11.515852214846262 - +chr1 109283230 109283240 KLF16_MA0741.1 10.129012192067052 - +chr1 109283271 109283281 KLF16_MA0741.1 7.221157217397201 - +chr1 109283443 109283453 KLF16_MA0741.1 7.252344905353884 + +chr1 109483787 109483797 KLF16_MA0741.1 8.246286403066854 - +chr1 109483791 109483801 KLF16_MA0741.1 7.192664483314162 - +chr1 109483793 109483803 KLF16_MA0741.1 8.182382664058968 - +chr1 109483794 109483804 KLF16_MA0741.1 8.182382664058968 - +chr1 109483795 109483805 KLF16_MA0741.1 8.182382664058968 - +chr1 109483796 109483806 KLF16_MA0741.1 8.182382664058968 - 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109656292 KLF16_MA0741.1 10.934422443214990 - +chr1 109687768 109687778 KLF16_MA0741.1 9.161010573738022 - +chr1 109816364 109816374 KLF16_MA0741.1 8.097394720817963 - +chr1 110034618 110034628 KLF16_MA0741.1 9.348097136943819 - +chr1 110034689 110034699 KLF16_MA0741.1 7.221157217397201 + +chr1 110035079 110035089 KLF16_MA0741.1 11.439854353349940 - +chr1 110210084 110210094 KLF16_MA0741.1 7.782043391674872 - +chr1 110210248 110210258 KLF16_MA0741.1 10.526134034101457 + +chr1 110210316 110210326 KLF16_MA0741.1 8.510905496433448 - +chr1 110210392 110210402 KLF16_MA0741.1 7.555147636505860 + +chr1 110210414 110210424 KLF16_MA0741.1 7.372754283644908 + +chr1 110210642 110210652 KLF16_MA0741.1 11.515852214846262 + +chr1 110338513 110338523 KLF16_MA0741.1 11.515852214846262 - +chr1 110338631 110338641 KLF16_MA0741.1 10.044951804235353 + +chr1 110338760 110338770 KLF16_MA0741.1 8.703143636237787 - +chr1 110630881 110630891 KLF16_MA0741.1 7.334022010349126 + +chr1 110964014 110964024 KLF16_MA0741.1 12.429572534094746 - +chr1 110964032 110964042 KLF16_MA0741.1 7.083322961850855 + +chr1 110964089 110964099 KLF16_MA0741.1 10.526134034101457 + +chr1 111139796 111139806 KLF16_MA0741.1 9.611260303779657 + +chr1 111140389 111140399 KLF16_MA0741.1 7.015755405553692 - +chr1 111203773 111203783 KLF16_MA0741.1 8.246286403066854 - +chr1 111203777 111203787 KLF16_MA0741.1 8.325407717015594 - +chr1 111203902 111203912 KLF16_MA0741.1 7.597185177184966 - +chr1 111204093 111204103 KLF16_MA0741.1 9.611260303779657 + +chr1 111204395 111204405 KLF16_MA0741.1 11.515852214846262 + +chr1 111204503 111204513 KLF16_MA0741.1 7.147237876263161 + +chr1 111219992 111220002 KLF16_MA0741.1 7.664856631435581 - +chr1 111222491 111222501 KLF16_MA0741.1 7.063101079652086 + +chr1 111449145 111449155 KLF16_MA0741.1 9.096102983307452 - +chr1 111449147 111449157 KLF16_MA0741.1 9.455027498264609 - +chr1 111507874 111507884 KLF16_MA0741.1 10.129012192067050 + +chr1 111508189 111508199 KLF16_MA0741.1 7.714198856633169 + +chr1 111508193 111508203 KLF16_MA0741.1 8.246286403066854 + +chr1 111592827 111592837 KLF16_MA0741.1 7.484846836777066 + +chr1 111592964 111592974 KLF16_MA0741.1 8.797599865137013 - +chr1 111593085 111593095 KLF16_MA0741.1 9.611260303779657 - +chr1 111619722 111619732 KLF16_MA0741.1 10.044951804235355 - +chr1 111619740 111619750 KLF16_MA0741.1 11.515852214846262 - +chr1 111619942 111619952 KLF16_MA0741.1 8.140359893168750 - +chr1 111619978 111619988 KLF16_MA0741.1 7.736987989761118 - +chr1 111620084 111620094 KLF16_MA0741.1 7.868355060261059 - +chr1 111620149 111620159 KLF16_MA0741.1 7.429153269849350 + +chr1 111739325 111739335 KLF16_MA0741.1 8.140359893168748 + +chr1 111739780 111739790 KLF16_MA0741.1 7.415613509468065 + +chr1 111739782 111739792 KLF16_MA0741.1 7.743977945384318 + +chr1 111739786 111739796 KLF16_MA0741.1 8.246286403066854 + +chr1 111755543 111755553 KLF16_MA0741.1 9.798727855873636 - +chr1 111755635 111755645 KLF16_MA0741.1 7.232243225626878 - 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112715358 KLF16_MA0741.1 11.515852214846262 + +chr1 112715369 112715379 KLF16_MA0741.1 7.270488267190371 - +chr1 112715495 112715505 KLF16_MA0741.1 7.597185177184964 + +chr1 112715516 112715526 KLF16_MA0741.1 8.703143636237787 + +chr1 112956253 112956263 KLF16_MA0741.1 7.057811571546559 - +chr1 112957519 112957529 KLF16_MA0741.1 7.642990509369171 + +chr1 112957535 112957545 KLF16_MA0741.1 7.642990509369171 + +chr1 113072876 113072886 KLF16_MA0741.1 9.571832100704624 + +chr1 113073099 113073109 KLF16_MA0741.1 10.044951804235353 + +chr1 113191882 113191892 KLF16_MA0741.1 10.368747817513093 - +chr1 113390075 113390085 KLF16_MA0741.1 12.429572534094744 + +chr1 113390180 113390190 KLF16_MA0741.1 7.667240189638018 + +chr1 113390428 113390438 KLF16_MA0741.1 11.515852214846262 - +chr1 113390654 113390664 KLF16_MA0741.1 9.611260303779657 + +chr1 113758950 113758960 KLF16_MA0741.1 10.129012192067052 - +chr1 113758986 113758996 KLF16_MA0741.1 7.018749719656233 + +chr1 113812516 113812526 KLF16_MA0741.1 8.839952134711398 + +chr1 113904890 113904900 KLF16_MA0741.1 7.143613597119288 + +chr1 113904962 113904972 KLF16_MA0741.1 10.526134034101457 + +chr1 113905120 113905130 KLF16_MA0741.1 8.885007536625153 + +chr1 113905538 113905548 KLF16_MA0741.1 7.079797785927442 + +chr1 113929806 113929816 KLF16_MA0741.1 10.412888069895981 - +chr1 113930172 113930182 KLF16_MA0741.1 7.787086744404447 + +chr1 114510874 114510884 KLF16_MA0741.1 10.199067128257731 + +chr1 114511229 114511239 KLF16_MA0741.1 7.031521043987133 + +chr1 114670050 114670060 KLF16_MA0741.1 8.885007536625153 + +chr1 114670094 114670104 KLF16_MA0741.1 10.338968728761941 + +chr1 114670107 114670117 KLF16_MA0741.1 8.134485188937413 + +chr1 114716393 114716403 KLF16_MA0741.1 8.134485188937413 + +chr1 114716767 114716777 KLF16_MA0741.1 7.399374181098201 + +chr1 114716867 114716877 KLF16_MA0741.1 9.463522032604081 + +chr1 114716872 114716882 KLF16_MA0741.1 9.139294011322244 + +chr1 114757500 114757510 KLF16_MA0741.1 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KLF16_MA0741.1 9.423169889151175 + +chr1 201982570 201982580 KLF16_MA0741.1 11.515852214846262 - +chr1 201982590 201982600 KLF16_MA0741.1 8.475718428595188 - +chr1 201982610 201982620 KLF16_MA0741.1 7.252344905353886 - +chr1 202144742 202144752 KLF16_MA0741.1 8.792070456654709 - +chr1 202341976 202341986 KLF16_MA0741.1 7.941752802043891 + +chr1 202810903 202810913 KLF16_MA0741.1 11.515852214846262 - +chr1 202811148 202811158 KLF16_MA0741.1 7.057811571546559 + +chr1 202888842 202888852 KLF16_MA0741.1 10.044951804235355 - +chr1 202889186 202889196 KLF16_MA0741.1 7.232243225626878 - +chr1 202957983 202957993 KLF16_MA0741.1 9.139294011322244 - +chr1 202958416 202958426 KLF16_MA0741.1 8.439980469401947 + +chr1 202967274 202967284 KLF16_MA0741.1 8.134485188937413 - +chr1 202967290 202967300 KLF16_MA0741.1 11.515852214846262 - +chr1 202967336 202967346 KLF16_MA0741.1 8.703143636237787 - +chr1 202967352 202967362 KLF16_MA0741.1 8.182382664058968 - +chr1 202967353 202967363 KLF16_MA0741.1 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204411853 KLF16_MA0741.1 8.146736946015549 + +chr1 204411934 204411944 KLF16_MA0741.1 8.475718428595188 - +chr1 204480797 204480807 KLF16_MA0741.1 7.742691590716209 + +chr1 204480863 204480873 KLF16_MA0741.1 7.334403181602675 + +chr1 204494595 204494605 KLF16_MA0741.1 8.106384802562644 - +chr1 204494597 204494607 KLF16_MA0741.1 8.434376817695338 - +chr1 204494817 204494827 KLF16_MA0741.1 8.134485188937413 - +chr1 204516453 204516463 KLF16_MA0741.1 7.386358549649255 + +chr1 204516456 204516466 KLF16_MA0741.1 9.245070961569716 + +chr1 204516669 204516679 KLF16_MA0741.1 8.224420281000446 - +chr1 205211595 205211605 KLF16_MA0741.1 9.611260303779657 + +chr1 205288284 205288294 KLF16_MA0741.1 8.897847406902184 + +chr1 205313797 205313807 KLF16_MA0741.1 8.106384802562644 - +chr1 205313799 205313809 KLF16_MA0741.1 9.455027498264609 - +chr1 205321798 205321808 KLF16_MA0741.1 11.848142762463471 + +chr1 205631130 205631140 KLF16_MA0741.1 8.941987659285074 - +chr1 205631519 205631529 KLF16_MA0741.1 10.412888069895981 + +chr1 205631558 205631568 KLF16_MA0741.1 10.412888069895981 + +chr1 205631839 205631849 KLF16_MA0741.1 8.134485188937413 + +chr1 205631848 205631858 KLF16_MA0741.1 9.611260303779657 + +chr1 205632032 205632042 KLF16_MA0741.1 10.129012192067052 - +chr1 205680079 205680089 KLF16_MA0741.1 8.621542123034851 + +chr1 205749349 205749359 KLF16_MA0741.1 7.895289355880347 + +chr1 205749375 205749385 KLF16_MA0741.1 8.703143636237787 - +chr1 205749406 205749416 KLF16_MA0741.1 7.232243225626878 - +chr1 205749431 205749441 KLF16_MA0741.1 10.129012192067050 + +chr1 205749484 205749494 KLF16_MA0741.1 9.236004583811660 + +chr1 205749612 205749622 KLF16_MA0741.1 7.526260150153466 - +chr1 205749645 205749655 KLF16_MA0741.1 9.245070961569716 + +chr1 205749700 205749710 KLF16_MA0741.1 8.246286403066854 - +chr1 205750018 205750028 KLF16_MA0741.1 7.411687397767110 + +chr1 205750043 205750053 KLF16_MA0741.1 10.338968728761941 + +chr1 205750045 205750055 KLF16_MA0741.1 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207053030 KLF16_MA0741.1 7.376265217437844 + +chr1 207053156 207053166 KLF16_MA0741.1 11.515852214846262 + +chr1 207053226 207053236 KLF16_MA0741.1 11.515852214846262 - +chr1 207321344 207321354 KLF16_MA0741.1 9.245070961569716 + +chr1 207412098 207412108 KLF16_MA0741.1 7.088878405815978 - +chr1 207454183 207454193 KLF16_MA0741.1 8.621542123034851 + +chr1 207454770 207454780 KLF16_MA0741.1 9.611260303779657 + +chr1 207496400 207496410 KLF16_MA0741.1 7.210130355396403 - +chr1 207752063 207752073 KLF16_MA0741.1 11.439854353349938 + +chr1 207752378 207752388 KLF16_MA0741.1 7.252344905353886 - +chr1 207752656 207752666 KLF16_MA0741.1 8.587643328442123 - +chr1 207868409 207868419 KLF16_MA0741.1 9.379029636768283 + +chr1 207868434 207868444 KLF16_MA0741.1 7.765104173200752 - +chr1 207868689 207868699 KLF16_MA0741.1 10.555913122852605 + +chr1 207868995 207869005 KLF16_MA0741.1 8.950050185620444 + +chr1 208244483 208244493 KLF16_MA0741.1 9.026048047116769 + +chr1 208604338 208604348 KLF16_MA0741.1 8.950050185620446 - +chr1 209134268 209134278 KLF16_MA0741.1 9.138140600248926 + +chr1 209747930 209747940 KLF16_MA0741.1 7.232243225626878 - +chr1 209828177 209828187 KLF16_MA0741.1 10.958672123483838 - +chr1 210233342 210233352 KLF16_MA0741.1 8.360557887653801 - +chr1 210311497 210311507 KLF16_MA0741.1 7.706045530178550 - +chr1 210311577 210311587 KLF16_MA0741.1 7.031521043987133 - +chr1 210311583 210311593 KLF16_MA0741.1 10.412888069895981 - +chr1 210328818 210328828 KLF16_MA0741.1 8.475718428595188 + +chr1 210328914 210328924 KLF16_MA0741.1 7.034597106735433 - +chr1 211258973 211258983 KLF16_MA0741.1 7.814446398398341 - +chr1 211258982 211258992 KLF16_MA0741.1 7.453112111932186 + +chr1 211259201 211259211 KLF16_MA0741.1 8.140359893168748 + +chr1 211259206 211259216 KLF16_MA0741.1 10.129012192067050 + +chr1 211259219 211259229 KLF16_MA0741.1 8.224420281000445 + +chr1 211259347 211259357 KLF16_MA0741.1 7.232243225626878 - +chr1 211259542 211259552 KLF16_MA0741.1 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KLF16_MA0741.1 7.414107126014246 - +chr1 212858357 212858367 KLF16_MA0741.1 7.526260150153466 - +chr1 212950505 212950515 KLF16_MA0741.1 9.463522032604081 + +chr1 212959957 212959967 KLF16_MA0741.1 9.349250548017135 + +chr1 213015519 213015529 KLF16_MA0741.1 7.252344905353884 + +chr1 213015524 213015534 KLF16_MA0741.1 7.252344905353884 + +chr1 213051191 213051201 KLF16_MA0741.1 8.224420281000445 + +chr1 213051294 213051304 KLF16_MA0741.1 7.157242302984895 + +chr1 213051736 213051746 KLF16_MA0741.1 10.338968728761943 - +chr1 214261679 214261689 KLF16_MA0741.1 7.564533773244086 + +chr1 214280798 214280808 KLF16_MA0741.1 7.742691590716209 - +chr1 214281159 214281169 KLF16_MA0741.1 10.631910984348931 + +chr1 214281551 214281561 KLF16_MA0741.1 9.611260303779657 - +chr1 214603471 214603481 KLF16_MA0741.1 8.036329866371963 + +chr1 215567559 215567569 KLF16_MA0741.1 7.031521043987133 + +chr1 217323206 217323216 KLF16_MA0741.1 7.109576874678593 - +chr1 218164299 218164309 KLF16_MA0741.1 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222644252 KLF16_MA0741.1 8.134485188937413 + +chr1 222712519 222712529 KLF16_MA0741.1 10.631910984348931 + +chr1 222712533 222712543 KLF16_MA0741.1 7.252344905353884 + +chr1 222712737 222712747 KLF16_MA0741.1 7.558930121537474 + +chr1 222814870 222814880 KLF16_MA0741.1 7.766941270985055 + +chr1 222814990 222815000 KLF16_MA0741.1 7.414107126014246 - +chr1 222815399 222815409 KLF16_MA0741.1 11.848142762463473 - +chr1 223143288 223143298 KLF16_MA0741.1 10.526134034101457 + +chr1 223143304 223143314 KLF16_MA0741.1 7.486000247850384 + +chr1 223143322 223143332 KLF16_MA0741.1 12.429572534094744 + +chr1 223143572 223143582 KLF16_MA0741.1 8.950050185620444 + +chr1 223143999 223144009 KLF16_MA0741.1 10.338968728761943 - +chr1 223364349 223364359 KLF16_MA0741.1 7.444658636950529 - +chr1 223364372 223364382 KLF16_MA0741.1 9.611260303779657 - +chr1 223726754 223726764 KLF16_MA0741.1 7.555147636505860 + +chr1 223845743 223845753 KLF16_MA0741.1 8.224420281000446 - +chr1 223845986 223845996 KLF16_MA0741.1 7.941752802043891 + +chr1 223846032 223846042 KLF16_MA0741.1 10.129012192067052 - +chr1 224114023 224114033 KLF16_MA0741.1 7.127059787756775 + +chr1 224183132 224183142 KLF16_MA0741.1 7.119987233713810 + +chr1 224183174 224183184 KLF16_MA0741.1 11.515852214846262 - +chr1 224183197 224183207 KLF16_MA0741.1 8.513899810535987 + +chr1 224183606 224183616 KLF16_MA0741.1 7.498167513845942 - +chr1 224330005 224330015 KLF16_MA0741.1 9.571832100704626 - +chr1 224356863 224356873 KLF16_MA0741.1 8.286638546519761 - +chr1 224357097 224357107 KLF16_MA0741.1 7.210130355396403 - +chr1 224357488 224357498 KLF16_MA0741.1 7.997043281099338 + +chr1 224357501 224357511 KLF16_MA0741.1 8.360557887653799 + +chr1 224380155 224380165 KLF16_MA0741.1 7.664856631435581 - +chr1 224434571 224434581 KLF16_MA0741.1 7.380754897942642 + +chr1 224434646 224434656 KLF16_MA0741.1 7.736987989761118 - +chr1 224434877 224434887 KLF16_MA0741.1 7.286925288629785 - +chr1 224503388 224503398 KLF16_MA0741.1 8.444618275485496 + +chr1 224503600 224503610 KLF16_MA0741.1 9.463522032604082 - +chr1 224503792 224503802 KLF16_MA0741.1 7.012880544319654 - +chr1 224623845 224623855 KLF16_MA0741.1 8.434376817695336 + +chr1 224624147 224624157 KLF16_MA0741.1 8.941987659285072 + +chr1 224739883 224739893 KLF16_MA0741.1 7.668393600711336 - +chr1 224851476 224851486 KLF16_MA0741.1 8.434376817695338 - +chr1 224922470 224922480 KLF16_MA0741.1 8.678824492449236 - +chr1 224929626 224929636 KLF16_MA0741.1 9.455027498264609 + +chr1 224929769 224929779 KLF16_MA0741.1 7.486000247850384 - +chr1 225428229 225428239 KLF16_MA0741.1 7.597185177184964 + +chr1 225428248 225428258 KLF16_MA0741.1 9.611260303779657 - +chr1 225467573 225467583 KLF16_MA0741.1 10.262970867265619 - +chr1 225467868 225467878 KLF16_MA0741.1 7.625202572696543 - +chr1 225467870 225467880 KLF16_MA0741.1 8.654574812180389 - +chr1 225468003 225468013 KLF16_MA0741.1 7.304757036446317 + +chr1 225653148 225653158 KLF16_MA0741.1 8.703143636237787 - 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225999412 KLF16_MA0741.1 10.044951804235353 + +chr1 225999426 225999436 KLF16_MA0741.1 7.774170550958809 + +chr1 225999441 225999451 KLF16_MA0741.1 7.015755405553692 - +chr1 225999483 225999493 KLF16_MA0741.1 8.224420281000446 - +chr1 226062327 226062337 KLF16_MA0741.1 8.224420281000445 + +chr1 226062419 226062429 KLF16_MA0741.1 10.412888069895981 - +chr1 226062542 226062552 KLF16_MA0741.1 10.129012192067052 - +chr1 226062591 226062601 KLF16_MA0741.1 11.515852214846262 - +chr1 226062616 226062626 KLF16_MA0741.1 11.515852214846262 - +chr1 226062670 226062680 KLF16_MA0741.1 11.515852214846262 - +chr1 226063170 226063180 KLF16_MA0741.1 7.221157217397201 + +chr1 226083279 226083289 KLF16_MA0741.1 8.224420281000445 + +chr1 226083286 226083296 KLF16_MA0741.1 9.026048047116769 + +chr1 226083554 226083564 KLF16_MA0741.1 12.429572534094744 + +chr1 226083572 226083582 KLF16_MA0741.1 11.439854353349938 + +chr1 226110060 226110070 KLF16_MA0741.1 10.412888069895981 - +chr1 226110066 226110076 KLF16_MA0741.1 8.286474602893390 - +chr1 226110244 226110254 KLF16_MA0741.1 10.050481212717656 - +chr1 226121942 226121952 KLF16_MA0741.1 7.369051724100491 - +chr1 226122006 226122016 KLF16_MA0741.1 7.252344905353884 + +chr1 226122029 226122039 KLF16_MA0741.1 9.423169889151175 + +chr1 226122356 226122366 KLF16_MA0741.1 7.083322961850855 + +chr1 226186197 226186207 KLF16_MA0741.1 7.150943959178408 - +chr1 226186366 226186376 KLF16_MA0741.1 10.338968728761943 - +chr1 226186470 226186480 KLF16_MA0741.1 8.839952134711398 + +chr1 226186818 226186828 KLF16_MA0741.1 10.338968728761941 + +chr1 226186898 226186908 KLF16_MA0741.1 8.224420281000445 + +chr1 226186942 226186952 KLF16_MA0741.1 8.841740117519903 - +chr1 226186955 226186965 KLF16_MA0741.1 8.325407717015590 + +chr1 226187001 226187011 KLF16_MA0741.1 9.161010573738022 - +chr1 226407657 226407667 KLF16_MA0741.1 7.316303613458575 - +chr1 226408133 226408143 KLF16_MA0741.1 7.252344905353886 - +chr1 226408172 226408182 KLF16_MA0741.1 7.057811571546559 - +chr1 226408342 226408352 KLF16_MA0741.1 9.245070961569716 + +chr1 226643475 226643485 KLF16_MA0741.1 7.399374181098201 + +chr1 226644281 226644291 KLF16_MA0741.1 7.887438184123070 + +chr1 226680254 226680264 KLF16_MA0741.1 7.597185177184966 - +chr1 226703404 226703414 KLF16_MA0741.1 7.369051724100491 - +chr1 226737349 226737359 KLF16_MA0741.1 10.412888069895981 - +chr1 226737866 226737876 KLF16_MA0741.1 9.611260303779657 + +chr1 226772709 226772719 KLF16_MA0741.1 7.738448536902015 + +chr1 226870559 226870569 KLF16_MA0741.1 7.210130355396403 - +chr1 226870566 226870576 KLF16_MA0741.1 7.597185177184966 - +chr1 226870986 226870996 KLF16_MA0741.1 7.850233953966593 - +chr1 226871065 226871075 KLF16_MA0741.1 7.708555765055054 - +chr1 226940246 226940256 KLF16_MA0741.1 7.252344905353886 - +chr1 227563450 227563460 KLF16_MA0741.1 8.121713864606514 - +chr1 227563838 227563848 KLF16_MA0741.1 10.044951804235355 - +chr1 227563963 227563973 KLF16_MA0741.1 8.076682009824870 - 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227788521 KLF16_MA0741.1 7.782043391674872 - +chr1 228037727 228037737 KLF16_MA0741.1 7.234702100255638 - +chr1 228082048 228082058 KLF16_MA0741.1 10.338968728761941 + +chr1 228082050 228082060 KLF16_MA0741.1 8.106384802562642 + +chr1 228082579 228082589 KLF16_MA0741.1 11.515852214846262 + +chr1 228082818 228082828 KLF16_MA0741.1 7.221157217397201 - +chr1 228103321 228103331 KLF16_MA0741.1 7.819202405740455 + +chr1 228109419 228109429 KLF16_MA0741.1 8.885007536625153 - +chr1 228109439 228109449 KLF16_MA0741.1 10.526134034101457 - +chr1 228109580 228109590 KLF16_MA0741.1 7.118657494567127 - +chr1 228139994 228140004 KLF16_MA0741.1 10.526134034101457 - +chr1 228140134 228140144 KLF16_MA0741.1 8.703143636237787 - +chr1 228140175 228140185 KLF16_MA0741.1 8.140359893168750 - +chr1 228140200 228140210 KLF16_MA0741.1 9.055233623490548 - +chr1 228140563 228140573 KLF16_MA0741.1 8.134485188937413 - +chr1 228165559 228165569 KLF16_MA0741.1 9.349250548017135 + +chr1 228165585 228165595 KLF16_MA0741.1 7.399374181098201 + +chr1 228165763 228165773 KLF16_MA0741.1 8.360557887653799 + +chr1 228166100 228166110 KLF16_MA0741.1 7.865754940547567 + +chr1 228166197 228166207 KLF16_MA0741.1 9.571832100704626 - +chr1 228166252 228166262 KLF16_MA0741.1 7.945241363235615 - +chr1 228213716 228213726 KLF16_MA0741.1 7.252344905353886 - +chr1 228213728 228213738 KLF16_MA0741.1 7.252344905353886 - +chr1 228407080 228407090 KLF16_MA0741.1 11.515852214846262 - +chr1 228407111 228407121 KLF16_MA0741.1 11.515852214846262 - +chr1 228407141 228407151 KLF16_MA0741.1 7.079797785927442 - +chr1 228459314 228459324 KLF16_MA0741.1 9.029830532148384 + +chr1 228463858 228463868 KLF16_MA0741.1 9.611260303779657 - +chr1 228635373 228635383 KLF16_MA0741.1 8.289985536686324 + +chr1 228635426 228635436 KLF16_MA0741.1 7.945241363235615 - +chr1 228635557 228635567 KLF16_MA0741.1 9.138140600248926 + +chr1 228646727 228646737 KLF16_MA0741.1 9.138140600248926 + +chr1 229271043 229271053 KLF16_MA0741.1 7.252344905353884 + +chr1 229342227 229342237 KLF16_MA0741.1 8.134485188937413 - +chr1 229342544 229342554 KLF16_MA0741.1 10.044951804235353 + +chr1 229342611 229342621 KLF16_MA0741.1 10.934422443214990 - +chr1 229342638 229342648 KLF16_MA0741.1 11.515852214846262 - +chr1 229368458 229368468 KLF16_MA0741.1 7.526260150153466 + +chr1 229508403 229508413 KLF16_MA0741.1 8.001066306127822 - +chr1 229558812 229558822 KLF16_MA0741.1 7.372754283644908 + +chr1 229559195 229559205 KLF16_MA0741.1 7.015755405553692 - +chr1 229625404 229625414 KLF16_MA0741.1 8.358378956199012 + +chr1 229625408 229625418 KLF16_MA0741.1 7.664856631435581 + +chr1 229625591 229625601 KLF16_MA0741.1 8.286638546519759 + +chr1 229625735 229625745 KLF16_MA0741.1 8.703143636237787 + +chr1 229625749 229625759 KLF16_MA0741.1 10.338968728761941 + +chr1 229625751 229625761 KLF16_MA0741.1 8.106384802562642 + +chr1 229856477 229856487 KLF16_MA0741.1 8.658111781456141 + +chr1 230066859 230066869 KLF16_MA0741.1 9.026048047116770 - 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230978147 KLF16_MA0741.1 7.591777198097857 - +chr1 230978919 230978929 KLF16_MA0741.1 8.885007536625153 - +chr1 231039600 231039610 KLF16_MA0741.1 10.412888069895981 + +chr1 231040268 231040278 KLF16_MA0741.1 8.475718428595188 + +chr1 231040290 231040300 KLF16_MA0741.1 10.526134034101457 + +chr1 231040313 231040323 KLF16_MA0741.1 12.429572534094744 + +chr1 231040327 231040337 KLF16_MA0741.1 11.515852214846262 + +chr1 231241074 231241084 KLF16_MA0741.1 7.712272044419664 - diff --git a/demo/known_tfbs_chr1_hg38/KLF4_MA0039.3.bed b/demo/known_tfbs_chr1_hg38/KLF4_MA0039.3.bed new file mode 100644 index 0000000..92f08cf --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/KLF4_MA0039.3.bed @@ -0,0 +1,475 @@ +chr1 827411 827421 KLF4_MA0039.3 7.750434564008669 - +chr1 1471754 1471764 KLF4_MA0039.3 7.698410926076104 - +chr1 1512138 1512148 KLF4_MA0039.3 7.698410926076104 - +chr1 1658794 1658804 KLF4_MA0039.3 8.647968655470114 - +chr1 1724138 1724148 KLF4_MA0039.3 8.647968655470114 - +chr1 1919328 1919338 KLF4_MA0039.3 9.400650217544991 + +chr1 1919716 1919726 KLF4_MA0039.3 7.682655790209614 + +chr1 2205274 2205284 KLF4_MA0039.3 8.742246363013813 + +chr1 2300462 2300472 KLF4_MA0039.3 9.824370443377109 - +chr1 2391596 2391606 KLF4_MA0039.3 8.728011248458452 - +chr1 2412540 2412550 KLF4_MA0039.3 7.720224148236163 + +chr1 2412546 2412556 KLF4_MA0039.3 7.864270859246791 + +chr1 2547085 2547095 KLF4_MA0039.3 8.712812236129860 - +chr1 2548095 2548105 KLF4_MA0039.3 8.304115218361563 + +chr1 2578429 2578439 KLF4_MA0039.3 8.114907069375315 + +chr1 2653161 2653171 KLF4_MA0039.3 9.759276916978125 + +chr1 2653201 2653211 KLF4_MA0039.3 8.479115224991714 + +chr1 2653322 2653332 KLF4_MA0039.3 7.871592502091841 + +chr1 2653362 2653372 KLF4_MA0039.3 8.479115224991714 + +chr1 2653402 2653412 KLF4_MA0039.3 8.479115224991714 + +chr1 2653483 2653493 KLF4_MA0039.3 8.479115224991714 + +chr1 2653523 2653533 KLF4_MA0039.3 8.479115224991714 + +chr1 2653563 2653573 KLF4_MA0039.3 7.866011045908578 + +chr1 2653604 2653614 KLF4_MA0039.3 7.880506284705415 + +chr1 2653644 2653654 KLF4_MA0039.3 8.479115224991714 + +chr1 2653684 2653694 KLF4_MA0039.3 8.479115224991714 + +chr1 2653764 2653774 KLF4_MA0039.3 8.479115224991714 + +chr1 2653804 2653814 KLF4_MA0039.3 8.479115224991714 + +chr1 2653884 2653894 KLF4_MA0039.3 9.759276916978125 + +chr1 2653924 2653934 KLF4_MA0039.3 8.479115224991714 + +chr1 2654004 2654014 KLF4_MA0039.3 8.479115224991714 + +chr1 2654124 2654134 KLF4_MA0039.3 8.479115224991714 + +chr1 2654164 2654174 KLF4_MA0039.3 8.479115224991714 + +chr1 2654206 2654216 KLF4_MA0039.3 9.036177712178347 + +chr1 2654408 2654418 KLF4_MA0039.3 9.036177712178347 + +chr1 2654527 2654537 KLF4_MA0039.3 8.479115224991714 + +chr1 2654567 2654577 KLF4_MA0039.3 8.479115224991714 + +chr1 2654607 2654617 KLF4_MA0039.3 8.479115224991714 + +chr1 2654647 2654657 KLF4_MA0039.3 8.479115224991714 + +chr1 2654727 2654737 KLF4_MA0039.3 8.255075237132353 + +chr1 2654767 2654777 KLF4_MA0039.3 8.363538743091805 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KLF4_MA0039.3 8.479115224991714 + +chr1 2750559 2750569 KLF4_MA0039.3 8.479115224991714 + +chr1 2750600 2750610 KLF4_MA0039.3 9.759276916978125 + +chr1 3624742 3624752 KLF4_MA0039.3 8.662203770025474 + +chr1 3677444 3677454 KLF4_MA0039.3 8.304115218361563 - +chr1 3747319 3747329 KLF4_MA0039.3 7.750434564008669 + +chr1 3899946 3899956 KLF4_MA0039.3 8.558657629863211 - +chr1 6026633 6026643 KLF4_MA0039.3 8.433388667047609 + +chr1 6359437 6359447 KLF4_MA0039.3 8.125263640677083 + +chr1 6785791 6785801 KLF4_MA0039.3 8.311735270509898 + +chr1 7954037 7954047 KLF4_MA0039.3 7.896448537699218 + +chr1 8097299 8097309 KLF4_MA0039.3 8.278471089245727 + +chr1 9129198 9129208 KLF4_MA0039.3 8.951600364340575 + +chr1 9129529 9129539 KLF4_MA0039.3 8.125263640677083 + +chr1 9129667 9129677 KLF4_MA0039.3 8.688469226318478 + +chr1 9234688 9234698 KLF4_MA0039.3 8.937365249785215 - +chr1 9539376 9539386 KLF4_MA0039.3 8.349303628536445 + +chr1 9687577 9687587 KLF4_MA0039.3 8.937365249785215 - +chr1 9687691 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KLF4_MA0039.3 9.202612605921878 + +chr1 16644316 16644326 KLF4_MA0039.3 7.382682459242090 + +chr1 18956893 18956903 KLF4_MA0039.3 8.739327638162102 + +chr1 19209824 19209834 KLF4_MA0039.3 8.937365249785215 + +chr1 19477255 19477265 KLF4_MA0039.3 7.933027650587889 + +chr1 19597409 19597419 KLF4_MA0039.3 9.128313585433249 + +chr1 20661752 20661762 KLF4_MA0039.3 8.343564615644711 - +chr1 21293814 21293824 KLF4_MA0039.3 10.008172940444863 + +chr1 21294832 21294842 KLF4_MA0039.3 10.846606422071909 + +chr1 21334542 21334552 KLF4_MA0039.3 9.521256319910613 - +chr1 21783172 21783182 KLF4_MA0039.3 8.134723640113938 + +chr1 21791707 21791717 KLF4_MA0039.3 9.400650217544991 - +chr1 22039967 22039977 KLF4_MA0039.3 10.022408055000223 - +chr1 22053055 22053065 KLF4_MA0039.3 8.213436066492751 + +chr1 23019769 23019779 KLF4_MA0039.3 7.402661146297156 + +chr1 23369143 23369153 KLF4_MA0039.3 7.913566548936786 - +chr1 23838668 23838678 KLF4_MA0039.3 8.349303628536445 + +chr1 23838686 23838696 KLF4_MA0039.3 8.728011248458452 + +chr1 23838704 23838714 KLF4_MA0039.3 8.349303628536445 + +chr1 23838722 23838732 KLF4_MA0039.3 8.728011248458452 + +chr1 23959099 23959109 KLF4_MA0039.3 9.860376079250033 - +chr1 23959327 23959337 KLF4_MA0039.3 9.759276916978125 - +chr1 23980911 23980921 KLF4_MA0039.3 10.051622824201347 + +chr1 24848360 24848370 KLF4_MA0039.3 8.480925938108596 + +chr1 24848398 24848408 KLF4_MA0039.3 8.202815145440734 - +chr1 24965408 24965418 KLF4_MA0039.3 7.900894156535053 - +chr1 25247658 25247668 KLF4_MA0039.3 7.452430149764089 - +chr1 25338255 25338265 KLF4_MA0039.3 8.098931768158167 - +chr1 25430300 25430310 KLF4_MA0039.3 10.253318813727397 - +chr1 25549755 25549765 KLF4_MA0039.3 8.114907069375315 - +chr1 25549822 25549832 KLF4_MA0039.3 10.846606422071909 - +chr1 25616728 25616738 KLF4_MA0039.3 7.720224148236161 - +chr1 25819638 25819648 KLF4_MA0039.3 7.517740917777212 + +chr1 25905477 25905487 KLF4_MA0039.3 7.874891780298807 - +chr1 26111780 26111790 KLF4_MA0039.3 7.922450913935465 - +chr1 26336671 26336681 KLF4_MA0039.3 8.105802539025980 + +chr1 26378510 26378520 KLF4_MA0039.3 9.090745227406698 - +chr1 26432186 26432196 KLF4_MA0039.3 8.742246363013813 + +chr1 26472350 26472360 KLF4_MA0039.3 8.120488525558578 + +chr1 26787342 26787352 KLF4_MA0039.3 7.795304618895680 - +chr1 26787470 26787480 KLF4_MA0039.3 8.073003548985465 + +chr1 27490173 27490183 KLF4_MA0039.3 8.742246363013813 + +chr1 27568669 27568679 KLF4_MA0039.3 8.131804915262229 + +chr1 27626201 27626211 KLF4_MA0039.3 10.860841536627269 + +chr1 27626615 27626625 KLF4_MA0039.3 7.834728446570745 + +chr1 27659833 27659843 KLF4_MA0039.3 9.092107038911404 + +chr1 27660115 27660125 KLF4_MA0039.3 10.008172940444863 - +chr1 27726256 27726266 KLF4_MA0039.3 10.860841536627269 - +chr1 28088768 28088778 KLF4_MA0039.3 7.496184160376803 + +chr1 28199922 28199932 KLF4_MA0039.3 8.668587723728207 + +chr1 28581919 28581929 KLF4_MA0039.3 7.698631091426760 + +chr1 28643213 28643223 KLF4_MA0039.3 7.642485687637904 + +chr1 28668977 28668987 KLF4_MA0039.3 8.753562752717462 + +chr1 28914807 28914817 KLF4_MA0039.3 8.098931768158167 - +chr1 28927115 28927125 KLF4_MA0039.3 8.527367112712463 - +chr1 29182195 29182205 KLF4_MA0039.3 7.931104572307562 - +chr1 31155181 31155191 KLF4_MA0039.3 8.479115224991714 - +chr1 31155196 31155206 KLF4_MA0039.3 8.479115224991714 - +chr1 31549513 31549523 KLF4_MA0039.3 7.624169954621689 + +chr1 31788808 31788818 KLF4_MA0039.3 7.455979389299369 - +chr1 32013508 32013518 KLF4_MA0039.3 8.739327638162102 - +chr1 32072806 32072816 KLF4_MA0039.3 8.713325261925853 - +chr1 32073338 32073348 KLF4_MA0039.3 7.900894156535053 - +chr1 32627899 32627909 KLF4_MA0039.3 10.022408055000223 - +chr1 32650620 32650630 KLF4_MA0039.3 9.034085194029155 + +chr1 32992565 32992575 KLF4_MA0039.3 8.080946503418605 + +chr1 33472675 33472685 KLF4_MA0039.3 7.382682459242090 - +chr1 34866346 34866356 KLF4_MA0039.3 7.931983848618644 + +chr1 35930698 35930708 KLF4_MA0039.3 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Klf12_MA0742.1 6.628140748241811 + +chr1 1033324 1033338 Klf12_MA0742.1 7.004766563611295 - +chr1 1059380 1059394 Klf12_MA0742.1 7.053374216045667 + +chr1 1059625 1059639 Klf12_MA0742.1 10.425211173442847 - +chr1 1059638 1059652 Klf12_MA0742.1 9.887717251212012 - +chr1 1059650 1059664 Klf12_MA0742.1 7.351572551308919 - +chr1 1116392 1116406 Klf12_MA0742.1 6.529373312762083 - +chr1 1157863 1157877 Klf12_MA0742.1 7.888854355100533 + +chr1 1273935 1273949 Klf12_MA0742.1 5.811990986933022 + +chr1 1274181 1274195 Klf12_MA0742.1 5.859628514446880 + +chr1 1308558 1308572 Klf12_MA0742.1 6.968163005955215 - +chr1 1349402 1349416 Klf12_MA0742.1 6.923991456714409 - +chr1 1349523 1349537 Klf12_MA0742.1 6.404944950794972 + +chr1 1471602 1471616 Klf12_MA0742.1 7.363978631783259 + +chr1 1615445 1615459 Klf12_MA0742.1 10.246453643044999 - +chr1 1659223 1659237 Klf12_MA0742.1 8.052979056418391 + +chr1 1693166 1693180 Klf12_MA0742.1 5.546335940293477 + +chr1 1693378 1693392 Klf12_MA0742.1 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Klf12_MA0742.1 6.431039651019284 + +chr1 11012278 11012292 Klf12_MA0742.1 6.102709069592690 + +chr1 11012294 11012308 Klf12_MA0742.1 7.053374216045667 + +chr1 11060052 11060066 Klf12_MA0742.1 6.588619991339281 - +chr1 11273043 11273057 Klf12_MA0742.1 8.944483361897758 + +chr1 11273138 11273152 Klf12_MA0742.1 8.039164787197233 + +chr1 11273448 11273462 Klf12_MA0742.1 5.609037920167540 + +chr1 11680873 11680887 Klf12_MA0742.1 5.723886181302770 - +chr1 11681193 11681207 Klf12_MA0742.1 13.320117548075855 + +chr1 11736117 11736131 Klf12_MA0742.1 7.053374216045669 - +chr1 11806042 11806056 Klf12_MA0742.1 6.409531601699686 + +chr1 11908994 11909008 Klf12_MA0742.1 6.083810010024552 + +chr1 11980132 11980146 Klf12_MA0742.1 6.460336919285657 + +chr1 14913997 14914011 Klf12_MA0742.1 6.163879408621586 + +chr1 15409691 15409705 Klf12_MA0742.1 6.095144627730311 - +chr1 15524913 15524927 Klf12_MA0742.1 5.733640347045244 + +chr1 15617328 15617342 Klf12_MA0742.1 7.380397691962611 + +chr1 15966516 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181129245 LEF1_MA0768.1 6.042211531617829 + +chr1 181129350 181129364 LEF1_MA0768.1 5.510595177712092 + +chr1 181430602 181430616 LEF1_MA0768.1 7.479180756669873 + +chr1 181505277 181505291 LEF1_MA0768.1 6.833294627152632 + +chr1 181937369 181937383 LEF1_MA0768.1 7.114804816811490 + +chr1 182391410 182391424 LEF1_MA0768.1 8.316583331251870 + +chr1 182616124 182616138 LEF1_MA0768.1 8.695416481512545 + +chr1 182677453 182677467 LEF1_MA0768.1 6.102140374180284 - +chr1 183590043 183590057 LEF1_MA0768.1 5.165494283599412 - +chr1 183652455 183652469 LEF1_MA0768.1 6.374150338860453 - +chr1 183652503 183652517 LEF1_MA0768.1 6.868030673717805 - +chr1 183842386 183842400 LEF1_MA0768.1 5.830853029182744 + +chr1 183842436 183842450 LEF1_MA0768.1 6.422891043799247 - +chr1 183842612 183842626 LEF1_MA0768.1 5.229217298811332 + +chr1 183842788 183842802 LEF1_MA0768.1 5.430812027090141 - +chr1 183912394 183912408 LEF1_MA0768.1 5.022646694804847 + +chr1 184866924 184866938 LEF1_MA0768.1 8.237518331565193 - +chr1 185339146 185339160 LEF1_MA0768.1 5.095771477214222 - +chr1 185439753 185439767 LEF1_MA0768.1 7.305446482176608 + +chr1 185526689 185526703 LEF1_MA0768.1 5.811258163124674 - +chr1 185636934 185636948 LEF1_MA0768.1 5.381549203513911 - +chr1 186178810 186178824 LEF1_MA0768.1 5.092429199291143 + +chr1 186482707 186482721 LEF1_MA0768.1 7.864273083033815 - diff --git a/demo/known_tfbs_chr1_hg38/LHX2_MA0700.1.bed b/demo/known_tfbs_chr1_hg38/LHX2_MA0700.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/LHX6_MA0658.1.bed b/demo/known_tfbs_chr1_hg38/LHX6_MA0658.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/LHX9_MA0701.1.bed b/demo/known_tfbs_chr1_hg38/LHX9_MA0701.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/LIN54_MA0619.1.bed b/demo/known_tfbs_chr1_hg38/LIN54_MA0619.1.bed new file mode 100644 index 0000000..c41d3b7 --- /dev/null +++ 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103517368 Lhx3_MA0135.1 5.395156181958197 + +chr1 103517364 103517376 Lhx3_MA0135.1 5.790138181221361 - +chr1 103525848 103525860 Lhx3_MA0135.1 5.907929202781551 + +chr1 103958768 103958780 Lhx3_MA0135.1 10.185377435205579 + +chr1 104593232 104593244 Lhx3_MA0135.1 9.438178210369161 - +chr1 104593233 104593245 Lhx3_MA0135.1 5.802560631775765 - +chr1 104593235 104593247 Lhx3_MA0135.1 9.715374743457939 + +chr1 104746955 104746967 Lhx3_MA0135.1 5.790146514346366 - +chr1 104747262 104747274 Lhx3_MA0135.1 10.290740450825560 - +chr1 104768469 104768481 Lhx3_MA0135.1 7.007351208669624 - +chr1 104768472 104768484 Lhx3_MA0135.1 9.543535670510744 + +chr1 106073307 106073319 Lhx3_MA0135.1 8.446872445699993 - +chr1 106727172 106727184 Lhx3_MA0135.1 8.850390052447136 - +chr1 106727175 106727187 Lhx3_MA0135.1 8.799095226751646 + +chr1 106727208 106727220 Lhx3_MA0135.1 10.878525831008384 - +chr1 107010970 107010982 Lhx3_MA0135.1 5.854679931484101 - +chr1 107016309 107016321 Lhx3_MA0135.1 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0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/MEIS2_MA0774.1.bed b/demo/known_tfbs_chr1_hg38/MEIS2_MA0774.1.bed new file mode 100644 index 0000000..364d4e5 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/MEIS2_MA0774.1.bed @@ -0,0 +1,118 @@ +chr1 1308010 1308017 MEIS2_MA0774.1 7.954608524111717 - +chr1 1308062 1308069 MEIS2_MA0774.1 7.954608524111717 - +chr1 2548554 2548561 MEIS2_MA0774.1 8.141624705218986 - +chr1 2578337 2578344 MEIS2_MA0774.1 7.954608524111716 + +chr1 2653463 2653470 MEIS2_MA0774.1 7.954608524111716 + +chr1 2684050 2684057 MEIS2_MA0774.1 9.413815815050643 + +chr1 2684290 2684297 MEIS2_MA0774.1 8.216482694264300 + +chr1 2688263 2688270 MEIS2_MA0774.1 7.954608524111716 + +chr1 2750419 2750426 MEIS2_MA0774.1 7.954608524111716 + +chr1 8097397 8097404 MEIS2_MA0774.1 9.413815815050643 + +chr1 8427579 8427586 MEIS2_MA0774.1 9.413815815050643 - +chr1 11980105 11980112 MEIS2_MA0774.1 9.413815815050643 + +chr1 14599399 14599406 MEIS2_MA0774.1 8.216482694264302 - +chr1 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95072947 MEIS2_MA0774.1 9.413815815050643 - +chr1 96417151 96417158 MEIS2_MA0774.1 9.338957826005325 + +chr1 96955698 96955705 MEIS2_MA0774.1 7.954608524111717 - +chr1 96955727 96955734 MEIS2_MA0774.1 9.338957826005325 + +chr1 97920996 97921003 MEIS2_MA0774.1 7.954608524111716 + +chr1 98688500 98688507 MEIS2_MA0774.1 8.141624705218986 - +chr1 99685712 99685719 MEIS2_MA0774.1 7.954608524111717 - +chr1 101179257 101179264 MEIS2_MA0774.1 9.338957826005325 + +chr1 101291792 101291799 MEIS2_MA0774.1 8.216482694264302 - +chr1 101389494 101389501 MEIS2_MA0774.1 7.918472182572298 + +chr1 101407834 101407841 MEIS2_MA0774.1 7.954608524111716 + +chr1 103327074 103327081 MEIS2_MA0774.1 9.338957826005325 - +chr1 103517290 103517297 MEIS2_MA0774.1 7.954608524111717 - +chr1 103525339 103525346 MEIS2_MA0774.1 7.918472182572298 + +chr1 104747277 104747284 MEIS2_MA0774.1 9.338957826005325 + +chr1 104768748 104768755 MEIS2_MA0774.1 8.141624705218986 - +chr1 104932403 104932410 MEIS2_MA0774.1 7.954608524111716 + +chr1 107141016 107141023 MEIS2_MA0774.1 9.338957826005325 - +chr1 109214395 109214402 MEIS2_MA0774.1 9.413815815050643 - +chr1 109548433 109548440 MEIS2_MA0774.1 7.918472182572298 + +chr1 110339126 110339133 MEIS2_MA0774.1 7.954608524111717 - diff --git a/demo/known_tfbs_chr1_hg38/MEIS3_MA0775.1.bed b/demo/known_tfbs_chr1_hg38/MEIS3_MA0775.1.bed new file mode 100644 index 0000000..8a66c85 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/MEIS3_MA0775.1.bed @@ -0,0 +1,233 @@ +chr1 1307958 1307965 MEIS3_MA0775.1 7.881237500016393 - +chr1 1308010 1308017 MEIS3_MA0775.1 7.671678546179466 - +chr1 1308062 1308069 MEIS3_MA0775.1 7.671678546179466 - +chr1 2548554 2548561 MEIS3_MA0775.1 7.923936925105762 - +chr1 2578337 2578344 MEIS3_MA0775.1 7.671678546179466 + +chr1 2653463 2653470 MEIS3_MA0775.1 7.671678546179466 + +chr1 2684050 2684057 MEIS3_MA0775.1 8.329244906806185 + +chr1 2684290 2684297 MEIS3_MA0775.1 7.714377971268835 + +chr1 2688263 2688270 MEIS3_MA0775.1 7.671678546179466 + +chr1 2750419 2750426 MEIS3_MA0775.1 7.671678546179466 + +chr1 3857128 3857135 MEIS3_MA0775.1 7.881237500016393 + +chr1 8097397 8097404 MEIS3_MA0775.1 8.329244906806185 + +chr1 8427579 8427586 MEIS3_MA0775.1 8.329244906806185 - +chr1 9037599 9037606 MEIS3_MA0775.1 7.881237500016393 + +chr1 11059841 11059848 MEIS3_MA0775.1 7.881237500016393 + +chr1 11980105 11980112 MEIS3_MA0775.1 8.329244906806185 + +chr1 13731130 13731137 MEIS3_MA0775.1 7.881237500016393 - +chr1 14599399 14599406 MEIS3_MA0775.1 7.714377971268835 - +chr1 14914079 14914086 MEIS3_MA0775.1 7.671678546179466 - +chr1 15975671 15975678 MEIS3_MA0775.1 7.671678546179466 + +chr1 16644387 16644394 MEIS3_MA0775.1 7.881237500016393 - +chr1 16905605 16905612 MEIS3_MA0775.1 7.881237500016393 - +chr1 21294542 21294549 MEIS3_MA0775.1 7.714377971268835 + +chr1 22053024 22053031 MEIS3_MA0775.1 7.671678546179466 - +chr1 22451964 22451971 MEIS3_MA0775.1 8.329244906806185 - +chr1 23368792 23368799 MEIS3_MA0775.1 8.329244906806185 + +chr1 24391800 24391807 MEIS3_MA0775.1 8.538803860643110 + +chr1 24848058 24848065 MEIS3_MA0775.1 7.881237500016393 - +chr1 25430275 25430282 MEIS3_MA0775.1 7.671678546179466 - +chr1 25820731 25820738 MEIS3_MA0775.1 7.671678546179466 + +chr1 26788077 26788084 MEIS3_MA0775.1 8.329244906806185 - +chr1 27155146 27155153 MEIS3_MA0775.1 7.671678546179466 - +chr1 28144876 28144883 MEIS3_MA0775.1 7.881237500016393 - +chr1 28259252 28259259 MEIS3_MA0775.1 7.671678546179466 - +chr1 28669820 28669827 MEIS3_MA0775.1 7.923936925105762 + +chr1 31483071 31483078 MEIS3_MA0775.1 7.923936925105762 + +chr1 31644970 31644977 MEIS3_MA0775.1 8.538803860643110 - +chr1 32520593 32520600 MEIS3_MA0775.1 8.538803860643110 - +chr1 33430866 33430873 MEIS3_MA0775.1 7.671678546179466 + +chr1 34360840 34360847 MEIS3_MA0775.1 7.881237500016393 + +chr1 35769863 35769870 MEIS3_MA0775.1 7.923936925105762 - +chr1 37807729 37807736 MEIS3_MA0775.1 7.881237500016393 - +chr1 38873307 38873314 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6.712325313334770 - diff --git a/demo/known_tfbs_chr1_hg38/NFAT5_MA0606.1.bed b/demo/known_tfbs_chr1_hg38/NFAT5_MA0606.1.bed new file mode 100644 index 0000000..a97351a --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/NFAT5_MA0606.1.bed @@ -0,0 +1,575 @@ +chr1 1157590 1157599 NFAT5_MA0606.1 8.149344262332749 - +chr1 2577840 2577849 NFAT5_MA0606.1 7.788637762874417 - +chr1 3665588 3665597 NFAT5_MA0606.1 7.912690321161140 - +chr1 3676951 3676960 NFAT5_MA0606.1 9.138117235350991 - +chr1 3901351 3901360 NFAT5_MA0606.1 7.990944995686214 + +chr1 6359789 6359798 NFAT5_MA0606.1 8.049760539087146 - +chr1 8097548 8097557 NFAT5_MA0606.1 7.670491354384175 + +chr1 8604428 8604437 NFAT5_MA0606.1 9.478761715515162 - +chr1 8629781 8629790 NFAT5_MA0606.1 7.766675275481596 + +chr1 8878225 8878234 NFAT5_MA0606.1 8.797960446511988 - +chr1 9164154 9164163 NFAT5_MA0606.1 7.807380446296490 - +chr1 9539239 9539248 NFAT5_MA0606.1 7.401144354907905 + +chr1 9943016 9943025 NFAT5_MA0606.1 7.729822219473485 - +chr1 10495253 10495262 NFAT5_MA0606.1 7.480666058859348 + +chr1 10965328 10965337 NFAT5_MA0606.1 7.480666058859348 - +chr1 11908737 11908746 NFAT5_MA0606.1 7.729822219473485 - +chr1 11926463 11926472 NFAT5_MA0606.1 8.797960446511988 - +chr1 12079651 12079660 NFAT5_MA0606.1 9.786733419530231 - +chr1 12449516 12449525 NFAT5_MA0606.1 7.766675275481596 + +chr1 15231961 15231970 NFAT5_MA0606.1 7.556356885582712 - +chr1 16905288 16905297 NFAT5_MA0606.1 7.807380446296492 + +chr1 21294783 21294792 NFAT5_MA0606.1 8.149344262332749 - +chr1 21866116 21866125 NFAT5_MA0606.1 7.576095558237059 + +chr1 22025276 22025285 NFAT5_MA0606.1 7.480666058859348 + +chr1 22026025 22026034 NFAT5_MA0606.1 8.173813097373868 - +chr1 23019884 23019893 NFAT5_MA0606.1 7.788637762874417 - +chr1 24391735 24391744 NFAT5_MA0606.1 8.646580981946199 - +chr1 24965288 24965297 NFAT5_MA0606.1 7.807380446296490 - +chr1 26865598 26865607 NFAT5_MA0606.1 7.729822219473485 - +chr1 27772939 27772948 NFAT5_MA0606.1 7.772703021097444 - 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9.478761715515164 + +chr1 50724689 50724698 NFAT5_MA0606.1 8.830145531335923 - +chr1 51491557 51491566 NFAT5_MA0606.1 7.670491354384175 - +chr1 51491605 51491614 NFAT5_MA0606.1 7.505552499268868 - +chr1 51505162 51505171 NFAT5_MA0606.1 7.910726844032704 + +chr1 51519493 51519502 NFAT5_MA0606.1 7.729822219473485 - +chr1 54764906 54764915 NFAT5_MA0606.1 7.480666058859348 + +chr1 55205144 55205153 NFAT5_MA0606.1 7.480666058859348 + +chr1 55288151 55288160 NFAT5_MA0606.1 7.990944995686214 + +chr1 56517119 56517128 NFAT5_MA0606.1 8.173813097373868 + +chr1 59007812 59007821 NFAT5_MA0606.1 8.149344262332749 - +chr1 59432801 59432810 NFAT5_MA0606.1 7.759660107626781 + +chr1 61319138 61319147 NFAT5_MA0606.1 8.481784801388937 - +chr1 61641679 61641688 NFAT5_MA0606.1 8.742907577601665 + +chr1 62613816 62613825 NFAT5_MA0606.1 7.990248547984145 - +chr1 62810090 62810099 NFAT5_MA0606.1 8.646580981946199 - +chr1 62810693 62810702 NFAT5_MA0606.1 7.759660107626781 + +chr1 63368220 63368229 NFAT5_MA0606.1 8.149344262332749 - +chr1 64172787 64172796 NFAT5_MA0606.1 8.149344262332752 + +chr1 64898623 64898632 NFAT5_MA0606.1 7.493011828370695 + +chr1 65895147 65895156 NFAT5_MA0606.1 8.797960446511988 - +chr1 65959020 65959029 NFAT5_MA0606.1 7.879238206910839 + +chr1 66247466 66247475 NFAT5_MA0606.1 9.215675462173996 - +chr1 66247857 66247866 NFAT5_MA0606.1 7.807380446296490 - +chr1 66276281 66276290 NFAT5_MA0606.1 7.807380446296490 - +chr1 66301284 66301293 NFAT5_MA0606.1 8.298916699701284 + +chr1 66380377 66380386 NFAT5_MA0606.1 7.493011828370695 - +chr1 66446272 66446281 NFAT5_MA0606.1 7.480666058859348 + +chr1 66758340 66758349 NFAT5_MA0606.1 7.480666058859348 - +chr1 67166405 67166414 NFAT5_MA0606.1 8.173813097373868 + +chr1 67194648 67194657 NFAT5_MA0606.1 8.173813097373868 + +chr1 67194735 67194744 NFAT5_MA0606.1 7.453330385156309 - +chr1 67766630 67766639 NFAT5_MA0606.1 9.399240011563723 + +chr1 68181016 68181025 NFAT5_MA0606.1 7.990944995686214 + +chr1 70685312 70685321 NFAT5_MA0606.1 7.729822219473487 + +chr1 71080862 71080871 NFAT5_MA0606.1 7.766675275481595 - +chr1 71081198 71081207 NFAT5_MA0606.1 8.797960446511988 - +chr1 73573424 73573433 NFAT5_MA0606.1 7.788637762874417 + +chr1 74579689 74579698 NFAT5_MA0606.1 8.149344262332752 + +chr1 74674790 74674799 NFAT5_MA0606.1 7.729822219473485 - +chr1 74681659 74681668 NFAT5_MA0606.1 7.486926804994452 - +chr1 74714341 74714350 NFAT5_MA0606.1 8.718438742560545 - +chr1 74734032 74734041 NFAT5_MA0606.1 9.399240011563723 + +chr1 74824644 74824653 NFAT5_MA0606.1 9.215675462174000 + +chr1 74858013 74858022 NFAT5_MA0606.1 8.173813097373868 - +chr1 75233325 75233334 NFAT5_MA0606.1 7.670491354384175 + +chr1 75985909 75985918 NFAT5_MA0606.1 7.910726844032704 + +chr1 75986161 75986170 NFAT5_MA0606.1 8.049760539087146 + +chr1 76154767 76154776 NFAT5_MA0606.1 7.818688121120500 + +chr1 76331251 76331260 NFAT5_MA0606.1 9.478761715515162 - +chr1 76331321 76331330 NFAT5_MA0606.1 7.670491354384175 - +chr1 76871884 76871893 NFAT5_MA0606.1 7.493011828370695 + +chr1 76939423 76939432 NFAT5_MA0606.1 7.493011828370695 - +chr1 76939577 76939586 NFAT5_MA0606.1 7.525196913194629 - +chr1 77219851 77219860 NFAT5_MA0606.1 10.047856195742959 - +chr1 77413235 77413244 NFAT5_MA0606.1 8.718438742560549 + +chr1 77413944 77413953 NFAT5_MA0606.1 7.729822219473487 + +chr1 77413989 77413998 NFAT5_MA0606.1 7.788637762874417 + +chr1 77539267 77539276 NFAT5_MA0606.1 8.149344262332749 - +chr1 77926889 77926898 NFAT5_MA0606.1 7.817479661795440 - +chr1 78088177 78088186 NFAT5_MA0606.1 8.646580981946199 - +chr1 78650157 78650166 NFAT5_MA0606.1 10.047856195742959 - +chr1 78651133 78651142 NFAT5_MA0606.1 8.646580981946203 + +chr1 78855448 78855457 NFAT5_MA0606.1 7.818688121120500 + +chr1 79052888 79052897 NFAT5_MA0606.1 7.635123571730778 + +chr1 79052999 79053008 NFAT5_MA0606.1 8.173813097373868 - +chr1 79260031 79260040 NFAT5_MA0606.1 7.409368578171447 - +chr1 80639891 80639900 NFAT5_MA0606.1 7.759660107626781 - 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7.493011828370695 - +chr1 89669873 89669882 NFAT5_MA0606.1 9.786733419530231 - +chr1 89670566 89670575 NFAT5_MA0606.1 7.990944995686212 - +chr1 89693967 89693976 NFAT5_MA0606.1 7.788637762874417 + +chr1 89781911 89781920 NFAT5_MA0606.1 9.478761715515162 - +chr1 89855907 89855916 NFAT5_MA0606.1 7.759660107626781 - +chr1 89995567 89995576 NFAT5_MA0606.1 8.094291393422427 - +chr1 92537122 92537131 NFAT5_MA0606.1 8.830145531335923 - +chr1 92537477 92537486 NFAT5_MA0606.1 8.797960446511990 + +chr1 92584585 92584594 NFAT5_MA0606.1 7.817479661795440 - +chr1 92960617 92960626 NFAT5_MA0606.1 7.409368578171447 - +chr1 92975180 92975189 NFAT5_MA0606.1 8.094291393422427 - +chr1 93033773 93033782 NFAT5_MA0606.1 9.478761715515164 + +chr1 93704059 93704068 NFAT5_MA0606.1 7.493011828370695 + +chr1 94411472 94411481 NFAT5_MA0606.1 7.670491354384175 - +chr1 94411557 94411566 NFAT5_MA0606.1 8.646580981946199 - +chr1 94962656 94962665 NFAT5_MA0606.1 8.830145531335926 + +chr1 95117133 95117142 NFAT5_MA0606.1 7.807380446296490 - +chr1 97461515 97461524 NFAT5_MA0606.1 7.480666058859348 - +chr1 97461583 97461592 NFAT5_MA0606.1 7.670491354384175 - +chr1 97848427 97848436 NFAT5_MA0606.1 8.376474926524288 + +chr1 97864744 97864753 NFAT5_MA0606.1 7.912690321161140 - +chr1 99228155 99228164 NFAT5_MA0606.1 8.797960446511988 - +chr1 99786909 99786918 NFAT5_MA0606.1 7.990944995686214 + +chr1 100133234 100133243 NFAT5_MA0606.1 8.646580981946199 - +chr1 100536083 100536092 NFAT5_MA0606.1 8.830145531335923 - +chr1 100896546 100896555 NFAT5_MA0606.1 8.569022755123198 + +chr1 101051952 101051961 NFAT5_MA0606.1 7.754840821335992 - +chr1 101178756 101178765 NFAT5_MA0606.1 7.480666058859348 - +chr1 101408301 101408310 NFAT5_MA0606.1 7.766675275481595 - +chr1 101444904 101444913 NFAT5_MA0606.1 7.525196913194629 + +chr1 101520834 101520843 NFAT5_MA0606.1 9.786733419530233 + +chr1 102174276 102174285 NFAT5_MA0606.1 7.807380446296490 - +chr1 102174332 102174341 NFAT5_MA0606.1 7.480666058859348 - 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108560859 NFAT5_MA0606.1 7.990248547984145 + +chr1 108693043 108693052 NFAT5_MA0606.1 7.480666058859348 + +chr1 109099998 109100007 NFAT5_MA0606.1 7.413490124419254 - +chr1 109283605 109283614 NFAT5_MA0606.1 7.729822219473487 + +chr1 110012235 110012244 NFAT5_MA0606.1 7.912690321161140 - +chr1 110635031 110635040 NFAT5_MA0606.1 7.866195989697422 + +chr1 111216121 111216130 NFAT5_MA0606.1 8.049760539087146 - +chr1 111219918 111219927 NFAT5_MA0606.1 7.788637762874417 + +chr1 112957008 112957017 NFAT5_MA0606.1 8.569022755123195 - +chr1 113390229 113390238 NFAT5_MA0606.1 8.149344262332752 + +chr1 113759295 113759304 NFAT5_MA0606.1 7.453330385156309 - +chr1 113784481 113784490 NFAT5_MA0606.1 8.569022755123198 + +chr1 113859533 113859542 NFAT5_MA0606.1 8.830145531335926 + +chr1 113859824 113859833 NFAT5_MA0606.1 7.453330385156309 - +chr1 113880734 113880743 NFAT5_MA0606.1 8.049760539087146 + +chr1 114716413 114716422 NFAT5_MA0606.1 8.173813097373868 - +chr1 115099457 115099466 NFAT5_MA0606.1 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143184935 NFAT5_MA0606.1 8.173813097373868 - +chr1 143185368 143185377 NFAT5_MA0606.1 7.493011828370695 - +chr1 143185504 143185513 NFAT5_MA0606.1 7.480666058859348 - +chr1 143185667 143185676 NFAT5_MA0606.1 7.493011828370695 - +chr1 143186231 143186240 NFAT5_MA0606.1 8.173813097373868 - +chr1 143186406 143186415 NFAT5_MA0606.1 7.480666058859348 - +chr1 143186699 143186708 NFAT5_MA0606.1 8.173813097373868 - +chr1 143192548 143192557 NFAT5_MA0606.1 8.173813097373868 - +chr1 143192713 143192722 NFAT5_MA0606.1 7.480666058859348 - +chr1 143193006 143193015 NFAT5_MA0606.1 8.173813097373868 - +chr1 143193449 143193458 NFAT5_MA0606.1 7.493011828370695 - +chr1 143193585 143193594 NFAT5_MA0606.1 7.480666058859348 - +chr1 143193751 143193760 NFAT5_MA0606.1 7.493011828370695 - +chr1 143194314 143194323 NFAT5_MA0606.1 8.173813097373868 - +chr1 143194772 143194781 NFAT5_MA0606.1 8.173813097373868 - +chr1 143194944 143194953 NFAT5_MA0606.1 7.480666058859348 - +chr1 143195237 143195246 NFAT5_MA0606.1 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143233412 NFAT5_MA0606.1 8.173813097373868 - +chr1 143233578 143233587 NFAT5_MA0606.1 7.480666058859348 - +chr1 143233894 143233903 NFAT5_MA0606.1 8.049760539087146 - +chr1 143233930 143233939 NFAT5_MA0606.1 7.480666058859348 - +chr1 143234030 143234039 NFAT5_MA0606.1 7.990248547984145 - +chr1 143237032 143237041 NFAT5_MA0606.1 8.173813097373868 - +chr1 143237110 143237119 NFAT5_MA0606.1 7.493011828370695 - +chr1 143237674 143237683 NFAT5_MA0606.1 8.173813097373868 - +chr1 143237849 143237858 NFAT5_MA0606.1 7.480666058859348 - +chr1 143238142 143238151 NFAT5_MA0606.1 8.173813097373868 - +chr1 143238584 143238593 NFAT5_MA0606.1 7.493011828370695 - +chr1 143238720 143238729 NFAT5_MA0606.1 7.480666058859348 - +chr1 143238886 143238895 NFAT5_MA0606.1 7.493011828370695 - +chr1 143239450 143239459 NFAT5_MA0606.1 8.173813097373868 - +chr1 143239625 143239634 NFAT5_MA0606.1 7.480666058859348 - +chr1 143239918 143239927 NFAT5_MA0606.1 8.173813097373868 - +chr1 143245910 143245919 NFAT5_MA0606.1 8.173813097373868 + +chr1 143245936 143245945 NFAT5_MA0606.1 7.480666058859348 + +chr1 143246132 143246141 NFAT5_MA0606.1 7.480666058859348 + +chr1 143247044 143247053 NFAT5_MA0606.1 8.173813097373868 + +chr1 143247608 143247617 NFAT5_MA0606.1 7.493011828370695 + +chr1 143247774 143247783 NFAT5_MA0606.1 7.480666058859348 + +chr1 143247810 143247819 NFAT5_MA0606.1 8.049760539087146 + +chr1 143248038 143248047 NFAT5_MA0606.1 8.049760539087146 + +chr1 143248188 143248197 NFAT5_MA0606.1 7.480666058859348 + +chr1 143248503 143248512 NFAT5_MA0606.1 7.480666058859348 + +chr1 143248678 143248687 NFAT5_MA0606.1 8.173813097373868 + +chr1 143248704 143248713 NFAT5_MA0606.1 7.480666058859348 + +chr1 143249990 143249999 NFAT5_MA0606.1 8.173813097373868 + +chr1 143250283 143250292 NFAT5_MA0606.1 7.480666058859348 + +chr1 143250458 143250467 NFAT5_MA0606.1 8.173813097373868 + +chr1 143250655 143250664 NFAT5_MA0606.1 7.480666058859348 + +chr1 143250997 143251006 NFAT5_MA0606.1 7.493011828370695 + 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143264176 NFAT5_MA0606.1 8.173813097373868 - +chr1 143264341 143264350 NFAT5_MA0606.1 7.480666058859348 - +chr1 143264634 143264643 NFAT5_MA0606.1 8.173813097373868 - +chr1 143265151 143265160 NFAT5_MA0606.1 8.173813097373868 - +chr1 143265326 143265335 NFAT5_MA0606.1 7.480666058859348 - +chr1 143265619 143265628 NFAT5_MA0606.1 8.173813097373868 - +chr1 143266113 143266122 NFAT5_MA0606.1 8.742907577601665 - +chr1 143266530 143266539 NFAT5_MA0606.1 7.493011828370695 - +chr1 144419153 144419162 NFAT5_MA0606.1 7.729822219473487 + +chr1 144546139 144546148 NFAT5_MA0606.1 8.173813097373868 - +chr1 145215924 145215933 NFAT5_MA0606.1 7.480666058859348 + +chr1 145845258 145845267 NFAT5_MA0606.1 7.589138471707722 - +chr1 145996969 145996978 NFAT5_MA0606.1 7.766675275481595 - +chr1 146387836 146387845 NFAT5_MA0606.1 8.173813097373868 + +chr1 147085028 147085037 NFAT5_MA0606.1 8.797960446511990 + +chr1 148334704 148334713 NFAT5_MA0606.1 9.478761715515162 - +chr1 149812636 149812645 NFAT5_MA0606.1 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175192337 NFAT5_MA0606.1 8.481784801388937 + +chr1 176193344 176193353 NFAT5_MA0606.1 9.295197166125439 - +chr1 176897508 176897517 NFAT5_MA0606.1 7.833168617209699 + +chr1 176897769 176897778 NFAT5_MA0606.1 7.766675275481595 - +chr1 176897788 176897797 NFAT5_MA0606.1 7.754840821335992 - +chr1 177946017 177946026 NFAT5_MA0606.1 7.453330385156311 + +chr1 178100870 178100879 NFAT5_MA0606.1 7.990944995686212 - +chr1 178542449 178542458 NFAT5_MA0606.1 8.049760539087146 - +chr1 178605903 178605912 NFAT5_MA0606.1 7.990248547984145 + +chr1 178660080 178660089 NFAT5_MA0606.1 7.453330385156311 + +chr1 180631716 180631725 NFAT5_MA0606.1 9.478761715515162 - +chr1 181398797 181398806 NFAT5_MA0606.1 7.401144354907905 + +chr1 183471571 183471580 NFAT5_MA0606.1 8.149344262332749 - +chr1 183481278 183481287 NFAT5_MA0606.1 7.498537331414054 + +chr1 183842403 183842412 NFAT5_MA0606.1 9.217638939302436 + +chr1 183842494 183842503 NFAT5_MA0606.1 8.559343028211941 - +chr1 183988870 183988879 NFAT5_MA0606.1 9.295197166125439 - +chr1 183988984 183988993 NFAT5_MA0606.1 7.766675275481596 + +chr1 183989062 183989071 NFAT5_MA0606.1 7.480666058859348 + +chr1 184859563 184859572 NFAT5_MA0606.1 7.480666058859348 - +chr1 184867681 184867690 NFAT5_MA0606.1 7.818688121120500 + +chr1 184892665 184892674 NFAT5_MA0606.1 9.367054926739787 + +chr1 185440336 185440345 NFAT5_MA0606.1 9.399240011563720 - +chr1 185526687 185526696 NFAT5_MA0606.1 7.766675275481596 + +chr1 185637186 185637195 NFAT5_MA0606.1 7.729822219473485 - +chr1 186179142 186179151 NFAT5_MA0606.1 8.797960446511988 - +chr1 186559911 186559920 NFAT5_MA0606.1 7.990944995686214 + +chr1 186595962 186595971 NFAT5_MA0606.1 9.295197166125440 + +chr1 186768956 186768965 NFAT5_MA0606.1 7.788637762874417 - +chr1 186865675 186865684 NFAT5_MA0606.1 9.367054926739787 + +chr1 187876856 187876865 NFAT5_MA0606.1 8.481784801388937 - +chr1 187987256 187987265 NFAT5_MA0606.1 8.559343028211941 - +chr1 187987320 187987329 NFAT5_MA0606.1 7.729822219473485 - 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193449237 NFAT5_MA0606.1 8.646580981946199 - +chr1 193537675 193537684 NFAT5_MA0606.1 9.478761715515162 - +chr1 194289697 194289706 NFAT5_MA0606.1 7.493011828370695 - +chr1 194830494 194830503 NFAT5_MA0606.1 8.481784801388937 + +chr1 194830896 194830905 NFAT5_MA0606.1 9.478761715515162 - +chr1 194831531 194831540 NFAT5_MA0606.1 8.049760539087146 - +chr1 195195761 195195770 NFAT5_MA0606.1 8.797960446511990 + +chr1 196660978 196660987 NFAT5_MA0606.1 7.990944995686214 + +chr1 196661221 196661230 NFAT5_MA0606.1 7.754840821335992 - +chr1 196743595 196743604 NFAT5_MA0606.1 8.049760539087146 - +chr1 197145975 197145984 NFAT5_MA0606.1 7.729822219473487 + +chr1 197146575 197146584 NFAT5_MA0606.1 8.830145531335926 + +chr1 197775810 197775819 NFAT5_MA0606.1 8.646580981946203 + +chr1 198157906 198157915 NFAT5_MA0606.1 9.478761715515162 - +chr1 198166249 198166258 NFAT5_MA0606.1 7.635123571730778 - +chr1 198167842 198167851 NFAT5_MA0606.1 9.217638939302436 + +chr1 198167859 198167868 NFAT5_MA0606.1 7.493011828370695 + +chr1 198168451 198168460 NFAT5_MA0606.1 7.879238206910839 + +chr1 198253597 198253606 NFAT5_MA0606.1 7.766675275481595 - +chr1 198520418 198520427 NFAT5_MA0606.1 8.173813097373868 - +chr1 198520448 198520457 NFAT5_MA0606.1 7.670491354384175 + +chr1 198598699 198598708 NFAT5_MA0606.1 9.478761715515162 - +chr1 198641858 198641867 NFAT5_MA0606.1 8.797960446511990 + +chr1 198937534 198937543 NFAT5_MA0606.1 8.149344262332752 + +chr1 199082089 199082098 NFAT5_MA0606.1 8.742907577601665 + +chr1 199151999 199152008 NFAT5_MA0606.1 8.830145531335926 + +chr1 199173818 199173827 NFAT5_MA0606.1 7.990248547984145 + +chr1 199174026 199174035 NFAT5_MA0606.1 7.990248547984145 - +chr1 199243277 199243286 NFAT5_MA0606.1 8.797960446511990 + +chr1 199243340 199243349 NFAT5_MA0606.1 7.493718045123265 - +chr1 199308469 199308478 NFAT5_MA0606.1 7.486926804994452 + +chr1 199463604 199463613 NFAT5_MA0606.1 8.646580981946203 + +chr1 200415990 200415999 NFAT5_MA0606.1 7.635123571730778 + 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207336173 NFAT5_MA0606.1 7.866195989697422 - +chr1 207822458 207822467 NFAT5_MA0606.1 8.560039475914010 - +chr1 208244626 208244635 NFAT5_MA0606.1 7.505552499268868 - +chr1 208988662 208988671 NFAT5_MA0606.1 8.094291393422427 + +chr1 208988893 208988902 NFAT5_MA0606.1 7.818688121120500 + +chr1 209673500 209673509 NFAT5_MA0606.1 7.480666058859348 - +chr1 209768970 209768979 NFAT5_MA0606.1 7.633915112405719 - +chr1 209768999 209769008 NFAT5_MA0606.1 9.478761715515162 - +chr1 209769741 209769750 NFAT5_MA0606.1 7.493011828370695 - +chr1 209784382 209784391 NFAT5_MA0606.1 8.569022755123198 + +chr1 209827745 209827754 NFAT5_MA0606.1 7.990248547984145 + +chr1 209828016 209828025 NFAT5_MA0606.1 8.149344262332749 - +chr1 210343592 210343601 NFAT5_MA0606.1 7.401144354907905 - +chr1 210374020 210374029 NFAT5_MA0606.1 9.217638939302434 - +chr1 210374602 210374611 NFAT5_MA0606.1 7.788637762874417 - +chr1 211327710 211327719 NFAT5_MA0606.1 7.866195989697422 + +chr1 211416971 211416980 NFAT5_MA0606.1 7.866195989697422 - +chr1 212415113 212415122 NFAT5_MA0606.1 7.401144354907905 - diff --git a/demo/known_tfbs_chr1_hg38/NFATC1_MA0624.1.bed b/demo/known_tfbs_chr1_hg38/NFATC1_MA0624.1.bed new file mode 100644 index 0000000..488fef6 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/NFATC1_MA0624.1.bed @@ -0,0 +1,342 @@ +chr1 2577840 2577849 NFATC1_MA0624.1 7.386336527528516 - +chr1 3676951 3676960 NFATC1_MA0624.1 7.715217657382075 - +chr1 6359789 6359798 NFATC1_MA0624.1 7.973550233434880 - +chr1 8604428 8604437 NFATC1_MA0624.1 7.631926750625558 - +chr1 8629870 8629879 NFATC1_MA0624.1 7.621439388052119 + +chr1 9413734 9413743 NFATC1_MA0624.1 8.315690721162518 - +chr1 9539239 9539248 NFATC1_MA0624.1 7.572916607057234 + +chr1 10495253 10495262 NFATC1_MA0624.1 7.760314300577129 + +chr1 11908737 11908746 NFATC1_MA0624.1 7.392659714066015 - +chr1 11926463 11926472 NFATC1_MA0624.1 7.421958860002736 - +chr1 12079651 12079660 NFATC1_MA0624.1 8.094908112655931 - +chr1 16905288 16905297 NFATC1_MA0624.1 7.562880843755558 + +chr1 19477397 19477406 NFATC1_MA0624.1 7.621439388052117 - +chr1 22025276 22025285 NFATC1_MA0624.1 7.781257471680918 + +chr1 22026025 22026034 NFATC1_MA0624.1 7.939102263134110 - +chr1 23019884 23019893 NFATC1_MA0624.1 7.365393356424726 - +chr1 28669545 28669554 NFATC1_MA0624.1 7.562880843755558 + +chr1 28737601 28737610 NFATC1_MA0624.1 7.631926750625558 + +chr1 31296875 31296884 NFATC1_MA0624.1 7.939102263134110 + +chr1 32628173 32628182 NFATC1_MA0624.1 7.902615350901969 - +chr1 32992429 32992438 NFATC1_MA0624.1 7.508980396912003 + +chr1 34859948 34859957 NFATC1_MA0624.1 7.522924895628114 - +chr1 34866491 34866500 NFATC1_MA0624.1 7.872309497066331 + +chr1 35931426 35931435 NFATC1_MA0624.1 7.301353932550620 - +chr1 36088815 36088824 NFATC1_MA0624.1 7.572916607057234 - +chr1 37901678 37901687 NFATC1_MA0624.1 7.535614486114269 - +chr1 38028272 38028281 NFATC1_MA0624.1 7.680016735312369 - +chr1 38173246 38173255 NFATC1_MA0624.1 7.421958860002736 - 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7.760314300577129 + +chr1 55288151 55288160 NFATC1_MA0624.1 7.979873419972378 + +chr1 56527019 56527028 NFATC1_MA0624.1 7.442651425495137 + +chr1 59008184 59008193 NFATC1_MA0624.1 7.378076107717693 + +chr1 59759531 59759540 NFATC1_MA0624.1 7.706405383191735 + +chr1 60978610 60978619 NFATC1_MA0624.1 7.401567016407062 + +chr1 61319138 61319147 NFATC1_MA0624.1 7.544181318981709 - +chr1 61641679 61641688 NFATC1_MA0624.1 8.131395024888072 + +chr1 62436246 62436255 NFATC1_MA0624.1 7.388742508109743 + +chr1 62613816 62613825 NFATC1_MA0624.1 7.522109686917290 - +chr1 63368220 63368229 NFATC1_MA0624.1 7.680016735312369 - +chr1 64172013 64172022 NFATC1_MA0624.1 7.351135605458811 - +chr1 65895147 65895156 NFATC1_MA0624.1 8.059707190586225 - +chr1 65959020 65959029 NFATC1_MA0624.1 7.742044315504234 + +chr1 66247466 66247475 NFATC1_MA0624.1 7.885438787071617 - +chr1 66276281 66276290 NFATC1_MA0624.1 7.562880843755558 - +chr1 66301284 66301293 NFATC1_MA0624.1 7.584952475819978 + +chr1 66336022 66336031 NFATC1_MA0624.1 7.414826374281141 - +chr1 66380377 66380386 NFATC1_MA0624.1 7.508980396912003 - +chr1 66381083 66381092 NFATC1_MA0624.1 7.252477136917838 - +chr1 66446272 66446281 NFATC1_MA0624.1 7.781257471680918 + +chr1 66758340 66758349 NFATC1_MA0624.1 7.760314300577129 - +chr1 67172004 67172013 NFATC1_MA0624.1 7.401567016407062 + +chr1 67194735 67194744 NFATC1_MA0624.1 7.570368869471656 - +chr1 67766630 67766639 NFATC1_MA0624.1 8.302431363288438 + +chr1 68181016 68181025 NFATC1_MA0624.1 7.979873419972378 + +chr1 70205732 70205741 NFATC1_MA0624.1 7.265495653225781 + +chr1 71080540 71080549 NFATC1_MA0624.1 7.728477015256155 + +chr1 73573424 73573433 NFATC1_MA0624.1 7.365393356424726 + +chr1 74674762 74674771 NFATC1_MA0624.1 7.380623845303273 - +chr1 74714341 74714350 NFATC1_MA0624.1 7.872309497066331 - +chr1 74734032 74734041 NFATC1_MA0624.1 8.302431363288438 + +chr1 74824644 74824653 NFATC1_MA0624.1 7.885438787071617 + +chr1 74858013 74858022 NFATC1_MA0624.1 7.939102263134110 - +chr1 75937290 75937299 NFATC1_MA0624.1 7.429146626298156 - +chr1 75985909 75985918 NFATC1_MA0624.1 7.334711993397395 + +chr1 75986161 75986170 NFATC1_MA0624.1 7.952607062331090 + +chr1 76331251 76331260 NFATC1_MA0624.1 8.489829056808333 - +chr1 77219851 77219860 NFATC1_MA0624.1 8.682121818562294 - +chr1 77413235 77413244 NFATC1_MA0624.1 7.872309497066331 + +chr1 77413944 77413953 NFATC1_MA0624.1 7.392659714066015 + +chr1 77413989 77413998 NFATC1_MA0624.1 7.386336527528516 + +chr1 77770805 77770814 NFATC1_MA0624.1 7.380623845303273 + +chr1 77979429 77979438 NFATC1_MA0624.1 7.936000265888662 + +chr1 78004744 78004753 NFATC1_MA0624.1 7.375613218104457 - +chr1 78143516 78143525 NFATC1_MA0624.1 7.330192434355022 + +chr1 78650157 78650166 NFATC1_MA0624.1 8.682121818562294 - +chr1 78651133 78651142 NFATC1_MA0624.1 7.693146025317656 + +chr1 79052999 79053008 NFATC1_MA0624.1 7.939102263134110 - +chr1 79053131 79053140 NFATC1_MA0624.1 7.429146626298156 - +chr1 79461221 79461230 NFATC1_MA0624.1 7.378076107717693 + +chr1 80640207 80640216 NFATC1_MA0624.1 7.939102263134110 - +chr1 80640751 80640760 NFATC1_MA0624.1 7.343321724360307 - +chr1 81801136 81801145 NFATC1_MA0624.1 7.472390270950987 - +chr1 84479244 84479253 NFATC1_MA0624.1 7.572671165734333 + +chr1 84573197 84573206 NFATC1_MA0624.1 7.872309497066331 + +chr1 84599425 84599434 NFATC1_MA0624.1 8.094908112655931 - +chr1 84945250 84945259 NFATC1_MA0624.1 7.701273158665964 + +chr1 84995934 84995943 NFATC1_MA0624.1 8.265129242345473 - +chr1 85276177 85276186 NFATC1_MA0624.1 7.227428680761248 + +chr1 85298157 85298166 NFATC1_MA0624.1 7.852080726224843 + +chr1 85308442 85308451 NFATC1_MA0624.1 7.301353932550620 + +chr1 85308521 85308530 NFATC1_MA0624.1 8.072836480591512 - +chr1 86914110 86914119 NFATC1_MA0624.1 7.519007689671842 + +chr1 87045644 87045653 NFATC1_MA0624.1 7.271301834844964 + +chr1 87058177 87058186 NFATC1_MA0624.1 8.059707190586225 + +chr1 88867869 88867878 NFATC1_MA0624.1 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96515884 NFATC1_MA0624.1 7.536184253502192 - +chr1 96721767 96721776 NFATC1_MA0624.1 7.334842061266189 + +chr1 97461515 97461524 NFATC1_MA0624.1 7.781257471680918 - +chr1 97848427 97848436 NFATC1_MA0624.1 7.755173605509521 + +chr1 97864744 97864753 NFATC1_MA0624.1 7.351888557227747 - +chr1 97920675 97920684 NFATC1_MA0624.1 7.227428680761248 - +chr1 99786909 99786918 NFATC1_MA0624.1 7.342125089388889 + +chr1 100037727 100037736 NFATC1_MA0624.1 7.898698144945698 - +chr1 100077195 100077204 NFATC1_MA0624.1 7.429146626298156 - +chr1 100536083 100536092 NFATC1_MA0624.1 7.252236295351702 - +chr1 101178756 101178765 NFATC1_MA0624.1 7.781257471680918 - +chr1 101178936 101178945 NFATC1_MA0624.1 7.330192434355022 + +chr1 101520834 101520843 NFATC1_MA0624.1 8.094908112655931 + +chr1 102174276 102174285 NFATC1_MA0624.1 7.562880843755558 - +chr1 102174294 102174303 NFATC1_MA0624.1 7.250358663741174 + +chr1 103514979 103514988 NFATC1_MA0624.1 8.265129242345473 - +chr1 103525979 103525988 NFATC1_MA0624.1 7.313585637912592 - +chr1 104593707 104593716 NFATC1_MA0624.1 7.755173605509519 - +chr1 104760348 104760357 NFATC1_MA0624.1 7.380623845303273 + +chr1 107010909 107010918 NFATC1_MA0624.1 7.463594596598925 - +chr1 107459876 107459885 NFATC1_MA0624.1 7.570368869471656 + +chr1 107936194 107936203 NFATC1_MA0624.1 7.584952475819977 - +chr1 107936265 107936274 NFATC1_MA0624.1 7.472390270950987 - +chr1 107963817 107963826 NFATC1_MA0624.1 7.375613218104457 + +chr1 108551537 108551546 NFATC1_MA0624.1 7.939102263134110 + +chr1 108559701 108559710 NFATC1_MA0624.1 7.764963927488296 - +chr1 109099998 109100007 NFATC1_MA0624.1 7.321582703392108 - +chr1 109283605 109283614 NFATC1_MA0624.1 7.392659714066015 + +chr1 110012235 110012244 NFATC1_MA0624.1 7.351888557227747 - +chr1 110338964 110338973 NFATC1_MA0624.1 7.549751553750271 - +chr1 110635031 110635040 NFATC1_MA0624.1 7.535614486114269 + +chr1 111216121 111216130 NFATC1_MA0624.1 7.973550233434880 - +chr1 111219918 111219927 NFATC1_MA0624.1 7.365393356424726 + +chr1 111449619 111449628 NFATC1_MA0624.1 7.271301834844964 - +chr1 111755520 111755529 NFATC1_MA0624.1 7.485649628825065 - +chr1 113390229 113390238 NFATC1_MA0624.1 7.680016735312369 + +chr1 113759295 113759304 NFATC1_MA0624.1 7.570368869471656 - +chr1 113784481 113784490 NFATC1_MA0624.1 7.522924895628114 + +chr1 113859533 113859542 NFATC1_MA0624.1 7.252236295351702 + +chr1 113859824 113859833 NFATC1_MA0624.1 7.570368869471656 - +chr1 113880734 113880743 NFATC1_MA0624.1 7.952607062331090 + +chr1 114716413 114716422 NFATC1_MA0624.1 7.301353932550620 - +chr1 115099457 115099466 NFATC1_MA0624.1 7.742044315504232 - +chr1 116111214 116111223 NFATC1_MA0624.1 8.682121818562294 - +chr1 116504335 116504344 NFATC1_MA0624.1 8.059707190586225 + +chr1 116597300 116597309 NFATC1_MA0624.1 8.110138601534477 + +chr1 118915094 118915103 NFATC1_MA0624.1 7.380623845303273 + +chr1 118960355 118960364 NFATC1_MA0624.1 7.760314300577129 - +chr1 119140344 119140353 NFATC1_MA0624.1 7.680016735312369 + +chr1 120850715 120850724 NFATC1_MA0624.1 7.393883203177351 - +chr1 125167618 125167627 NFATC1_MA0624.1 7.760314300577129 + +chr1 125168071 125168080 NFATC1_MA0624.1 7.973550233434880 + +chr1 125178079 125178088 NFATC1_MA0624.1 7.952607062331090 + +chr1 125179401 125179410 NFATC1_MA0624.1 7.760314300577129 + +chr1 125179728 125179737 NFATC1_MA0624.1 8.123397959408555 + +chr1 125180196 125180205 NFATC1_MA0624.1 8.123397959408555 + +chr1 125181177 125181186 NFATC1_MA0624.1 7.760314300577129 + +chr1 125181213 125181222 NFATC1_MA0624.1 7.952607062331090 + +chr1 125182827 125182836 NFATC1_MA0624.1 8.123397959408555 + +chr1 143184708 143184717 NFATC1_MA0624.1 8.123397959408555 - +chr1 143185176 143185185 NFATC1_MA0624.1 8.123397959408555 - +chr1 143185504 143185513 NFATC1_MA0624.1 7.760314300577129 - +chr1 143192788 143192797 NFATC1_MA0624.1 8.123397959408555 - +chr1 143193256 143193265 NFATC1_MA0624.1 8.123397959408555 - +chr1 143193585 143193594 NFATC1_MA0624.1 7.760314300577129 - +chr1 143195487 143195496 NFATC1_MA0624.1 8.123397959408555 - +chr1 143213983 143213992 NFATC1_MA0624.1 8.123397959408555 - +chr1 143214451 143214460 NFATC1_MA0624.1 8.123397959408555 - +chr1 143214779 143214788 NFATC1_MA0624.1 7.760314300577129 - +chr1 143215758 143215767 NFATC1_MA0624.1 8.123397959408555 - +chr1 143216554 143216563 NFATC1_MA0624.1 7.760314300577129 - +chr1 143221859 143221868 NFATC1_MA0624.1 7.760314300577129 - +chr1 143221946 143221955 NFATC1_MA0624.1 7.760314300577129 - +chr1 143222021 143222030 NFATC1_MA0624.1 8.123397959408555 - +chr1 143222489 143222498 NFATC1_MA0624.1 8.123397959408555 - +chr1 143222957 143222966 NFATC1_MA0624.1 8.123397959408555 - +chr1 143223159 143223168 NFATC1_MA0624.1 7.939102263134110 - +chr1 143223285 143223294 NFATC1_MA0624.1 7.760314300577129 - +chr1 143231881 143231890 NFATC1_MA0624.1 8.123397959408555 - +chr1 143232073 143232082 NFATC1_MA0624.1 7.952607062331090 - +chr1 143232271 143232280 NFATC1_MA0624.1 8.131395024888072 - +chr1 143232346 143232355 NFATC1_MA0624.1 8.123397959408555 - +chr1 143232674 143232683 NFATC1_MA0624.1 7.760314300577129 - +chr1 143233653 143233662 NFATC1_MA0624.1 8.123397959408555 - +chr1 143233894 143233903 NFATC1_MA0624.1 7.952607062331090 - +chr1 143233930 143233939 NFATC1_MA0624.1 7.760314300577129 - +chr1 143237924 143237933 NFATC1_MA0624.1 8.123397959408555 - +chr1 143238720 143238729 NFATC1_MA0624.1 7.760314300577129 - +chr1 143240168 143240177 NFATC1_MA0624.1 8.123397959408555 - +chr1 143246966 143246975 NFATC1_MA0624.1 8.123397959408555 + +chr1 143247774 143247783 NFATC1_MA0624.1 7.760314300577129 + +chr1 143247810 143247819 NFATC1_MA0624.1 7.952607062331090 + +chr1 143248038 143248047 NFATC1_MA0624.1 7.952607062331090 + +chr1 143251163 143251172 NFATC1_MA0624.1 7.760314300577129 + +chr1 143251199 143251208 NFATC1_MA0624.1 7.952607062331090 + +chr1 143252850 143252859 NFATC1_MA0624.1 8.123397959408555 + +chr1 143253393 143253402 NFATC1_MA0624.1 7.973550233434880 + +chr1 143254772 143254781 NFATC1_MA0624.1 7.760314300577129 + +chr1 143255101 143255110 NFATC1_MA0624.1 8.123397959408555 + +chr1 143256070 143256079 NFATC1_MA0624.1 7.760314300577129 + +chr1 143256398 143256407 NFATC1_MA0624.1 8.123397959408555 + +chr1 143264416 143264425 NFATC1_MA0624.1 8.123397959408555 - +chr1 143265229 143265238 NFATC1_MA0624.1 7.252477136917838 - +chr1 143265401 143265410 NFATC1_MA0624.1 8.123397959408555 - +chr1 143265869 143265878 NFATC1_MA0624.1 8.123397959408555 - +chr1 143266113 143266122 NFATC1_MA0624.1 8.131395024888072 - +chr1 143266338 143266347 NFATC1_MA0624.1 8.123397959408555 - +chr1 144412835 144412844 NFATC1_MA0624.1 7.393883203177351 + +chr1 144546139 144546148 NFATC1_MA0624.1 7.301353932550620 - +chr1 145281375 145281384 NFATC1_MA0624.1 7.393883203177351 + +chr1 146387836 146387845 NFATC1_MA0624.1 7.301353932550620 + +chr1 147084304 147084313 NFATC1_MA0624.1 7.326714927917878 - +chr1 148334704 148334713 NFATC1_MA0624.1 7.631926750625558 - +chr1 148522860 148522869 NFATC1_MA0624.1 7.393883203177351 + +chr1 149812636 149812645 NFATC1_MA0624.1 7.973550233434880 + +chr1 149812728 149812737 NFATC1_MA0624.1 7.334711993397395 - +chr1 150067661 150067670 NFATC1_MA0624.1 8.059707190586225 + +chr1 150255655 150255664 NFATC1_MA0624.1 7.572916607057234 - +chr1 150293842 150293851 NFATC1_MA0624.1 7.385273472214440 + +chr1 150364428 150364437 NFATC1_MA0624.1 7.536184253502192 + +chr1 152908162 152908171 NFATC1_MA0624.1 7.973550233434880 + +chr1 152908228 152908237 NFATC1_MA0624.1 8.110138601534477 - +chr1 153671570 153671579 NFATC1_MA0624.1 7.264867020318479 + +chr1 155324403 155324412 NFATC1_MA0624.1 7.781257471680918 + +chr1 155859078 155859087 NFATC1_MA0624.1 7.522485196108983 + +chr1 157562638 157562647 NFATC1_MA0624.1 7.952607062331090 - +chr1 158179711 158179720 NFATC1_MA0624.1 7.559411807860254 - +chr1 158204064 158204073 NFATC1_MA0624.1 8.072836480591512 - +chr1 158286525 158286534 NFATC1_MA0624.1 7.264867020318479 + +chr1 159008919 159008928 NFATC1_MA0624.1 7.252236295351702 + +chr1 159012873 159012882 NFATC1_MA0624.1 7.973550233434880 + +chr1 159076943 159076952 NFATC1_MA0624.1 7.250358663741174 - +chr1 159121719 159121728 NFATC1_MA0624.1 7.463594596598925 - +chr1 159121843 159121852 NFATC1_MA0624.1 7.252236295351702 + +chr1 159839064 159839073 NFATC1_MA0624.1 8.489829056808333 - +chr1 160262625 160262634 NFATC1_MA0624.1 7.485649628825065 - +chr1 160837686 160837695 NFATC1_MA0624.1 7.401567016407062 - +chr1 161045782 161045791 NFATC1_MA0624.1 7.393883203177351 - +chr1 161186054 161186063 NFATC1_MA0624.1 8.489829056808333 + +chr1 161524008 161524017 NFATC1_MA0624.1 7.755173605509519 - +chr1 161540579 161540588 NFATC1_MA0624.1 7.535614486114269 - +chr1 161622015 161622024 NFATC1_MA0624.1 7.535614486114269 - +chr1 161915156 161915165 NFATC1_MA0624.1 7.380623845303273 + +chr1 161962706 161962715 NFATC1_MA0624.1 7.401567016407062 + +chr1 162497716 162497725 NFATC1_MA0624.1 7.562880843755558 + +chr1 162498595 162498604 NFATC1_MA0624.1 7.334711993397395 - +chr1 165598442 165598451 NFATC1_MA0624.1 7.570368869471656 + +chr1 165631449 165631458 NFATC1_MA0624.1 7.321582703392108 + +chr1 167328935 167328944 NFATC1_MA0624.1 7.535614486114269 - +chr1 167329344 167329353 NFATC1_MA0624.1 7.522109686917290 - +chr1 167500027 167500036 NFATC1_MA0624.1 7.693146025317656 + +chr1 167539857 167539866 NFATC1_MA0624.1 7.401567016407062 + +chr1 167714858 167714867 NFATC1_MA0624.1 7.252477136917838 + +chr1 168553975 168553984 NFATC1_MA0624.1 7.693146025317656 + +chr1 168554118 168554127 NFATC1_MA0624.1 7.252236295351702 + +chr1 168554271 168554280 NFATC1_MA0624.1 7.386336527528516 - +chr1 169139209 169139218 NFATC1_MA0624.1 8.072836480591512 + +chr1 169594514 169594523 NFATC1_MA0624.1 7.751704569614216 + +chr1 169594647 169594656 NFATC1_MA0624.1 7.885438787071617 + +chr1 169594779 169594788 NFATC1_MA0624.1 7.781257471680918 - +chr1 169692563 169692572 NFATC1_MA0624.1 7.593859778161024 - +chr1 169692596 169692605 NFATC1_MA0624.1 7.973550233434880 - +chr1 170214630 170214639 NFATC1_MA0624.1 7.330192434355022 - +chr1 171313553 171313562 NFATC1_MA0624.1 7.742044315504232 - +chr1 172338503 172338512 NFATC1_MA0624.1 7.378076107717693 + +chr1 172358292 172358301 NFATC1_MA0624.1 7.364264895464097 - +chr1 172358826 172358835 NFATC1_MA0624.1 7.544181318981709 + +chr1 173020736 173020745 NFATC1_MA0624.1 7.570368869471656 - +chr1 173213201 173213210 NFATC1_MA0624.1 7.252477136917838 + +chr1 174800129 174800138 NFATC1_MA0624.1 7.570368869471656 + +chr1 174815717 174815726 NFATC1_MA0624.1 7.562880843755558 + +chr1 174874599 174874608 NFATC1_MA0624.1 7.979873419972378 + +chr1 175189095 175189104 NFATC1_MA0624.1 8.489829056808333 + +chr1 175192328 175192337 NFATC1_MA0624.1 7.544181318981709 + +chr1 176193344 176193353 NFATC1_MA0624.1 7.435088150008021 - +chr1 177946017 177946026 NFATC1_MA0624.1 7.570368869471656 + +chr1 178100870 178100879 NFATC1_MA0624.1 7.979873419972378 - +chr1 178542449 178542458 NFATC1_MA0624.1 7.973550233434880 - +chr1 178660080 178660089 NFATC1_MA0624.1 7.570368869471656 + +chr1 179883177 179883186 NFATC1_MA0624.1 7.401567016407062 - +chr1 180631716 180631725 NFATC1_MA0624.1 8.489829056808333 - +chr1 181398731 181398740 NFATC1_MA0624.1 7.543428367212773 + +chr1 181398797 181398806 NFATC1_MA0624.1 7.572916607057234 + +chr1 183842403 183842412 NFATC1_MA0624.1 7.902615350901969 + +chr1 183842494 183842503 NFATC1_MA0624.1 7.714402448671251 - +chr1 183956692 183956701 NFATC1_MA0624.1 7.330192434355022 + +chr1 183988870 183988879 NFATC1_MA0624.1 8.072836480591512 - +chr1 183989062 183989071 NFATC1_MA0624.1 7.781257471680918 + +chr1 184036967 184036976 NFATC1_MA0624.1 7.348786559982299 + +chr1 184859563 184859572 NFATC1_MA0624.1 7.760314300577129 - +chr1 184892665 184892674 NFATC1_MA0624.1 8.251999952340187 + +chr1 185316971 185316980 NFATC1_MA0624.1 7.330192434355022 - +chr1 185440336 185440345 NFATC1_MA0624.1 8.302431363288438 - +chr1 186519057 186519066 NFATC1_MA0624.1 7.572671165734333 + +chr1 186768956 186768965 NFATC1_MA0624.1 7.365393356424726 - +chr1 186849712 186849721 NFATC1_MA0624.1 7.330192434355022 + +chr1 186849736 186849745 NFATC1_MA0624.1 7.429146626298156 + +chr1 186865675 186865684 NFATC1_MA0624.1 8.251999952340187 + +chr1 187876856 187876865 NFATC1_MA0624.1 7.544181318981709 - +chr1 187987256 187987265 NFATC1_MA0624.1 7.714402448671251 - +chr1 188027774 188027783 NFATC1_MA0624.1 7.952607062331090 - +chr1 188050467 188050476 NFATC1_MA0624.1 7.973550233434880 + +chr1 188241532 188241541 NFATC1_MA0624.1 8.489829056808333 - +chr1 189859966 189859975 NFATC1_MA0624.1 8.094908112655931 - +chr1 190760081 190760090 NFATC1_MA0624.1 7.572916607057234 + +chr1 192545611 192545620 NFATC1_MA0624.1 7.584952475819977 - +chr1 192545775 192545784 NFATC1_MA0624.1 7.562880843755558 - +chr1 192545808 192545817 NFATC1_MA0624.1 7.562880843755558 + +chr1 192626666 192626675 NFATC1_MA0624.1 7.631926750625558 - +chr1 192704045 192704054 NFATC1_MA0624.1 7.781257471680918 + +chr1 192984119 192984128 NFATC1_MA0624.1 8.265129242345473 - +chr1 193070390 193070399 NFATC1_MA0624.1 7.364264895464097 - +chr1 193071019 193071028 NFATC1_MA0624.1 7.326714927917880 + +chr1 193449228 193449237 NFATC1_MA0624.1 7.693146025317656 - +chr1 193537675 193537684 NFATC1_MA0624.1 8.489829056808333 - diff --git a/demo/known_tfbs_chr1_hg38/NFATC2_MA0152.1.bed b/demo/known_tfbs_chr1_hg38/NFATC2_MA0152.1.bed new file mode 100644 index 0000000..5b6d530 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/NFATC2_MA0152.1.bed @@ -0,0 +1,229 @@ +chr1 1157592 1157598 NFATC2_MA0152.1 8.741114833200648 - +chr1 2654273 2654279 NFATC2_MA0152.1 8.741114833200648 - +chr1 2654475 2654481 NFATC2_MA0152.1 8.741114833200648 - +chr1 2750267 2750273 NFATC2_MA0152.1 8.741114833200648 - +chr1 3676953 3676959 NFATC2_MA0152.1 8.741114833200648 - +chr1 3901352 3901358 NFATC2_MA0152.1 8.741114833200649 + +chr1 6579818 6579824 NFATC2_MA0152.1 8.741114833200648 - +chr1 7994408 7994414 NFATC2_MA0152.1 8.741114833200649 + +chr1 8604430 8604436 NFATC2_MA0152.1 8.741114833200648 - +chr1 8878227 8878233 NFATC2_MA0152.1 8.741114833200648 - +chr1 9164156 9164162 NFATC2_MA0152.1 8.741114833200648 - +chr1 9942784 9942790 NFATC2_MA0152.1 8.741114833200648 - +chr1 9943018 9943024 NFATC2_MA0152.1 8.741114833200648 - +chr1 11908739 11908745 NFATC2_MA0152.1 8.741114833200648 - +chr1 11908988 11908994 NFATC2_MA0152.1 8.741114833200649 + +chr1 11926465 11926471 NFATC2_MA0152.1 8.741114833200648 - +chr1 12079653 12079659 NFATC2_MA0152.1 8.741114833200648 - +chr1 16905289 16905295 NFATC2_MA0152.1 8.741114833200649 + +chr1 17536611 17536617 NFATC2_MA0152.1 8.741114833200649 + +chr1 21294785 21294791 NFATC2_MA0152.1 8.741114833200648 - +chr1 21783332 21783338 NFATC2_MA0152.1 8.741114833200648 - +chr1 24391737 24391743 NFATC2_MA0152.1 8.741114833200648 - +chr1 24415962 24415968 NFATC2_MA0152.1 8.741114833200648 - 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8.741114833200648 - +chr1 38173248 38173254 NFATC2_MA0152.1 8.741114833200648 - +chr1 40232502 40232508 NFATC2_MA0152.1 8.741114833200648 - +chr1 42456157 42456163 NFATC2_MA0152.1 8.741114833200648 - +chr1 43389803 43389809 NFATC2_MA0152.1 8.741114833200649 + +chr1 43650179 43650185 NFATC2_MA0152.1 8.741114833200648 - +chr1 44030326 44030332 NFATC2_MA0152.1 8.741114833200648 - +chr1 45550949 45550955 NFATC2_MA0152.1 8.741114833200649 + +chr1 47351663 47351669 NFATC2_MA0152.1 8.741114833200649 + +chr1 50348859 50348865 NFATC2_MA0152.1 8.741114833200649 + +chr1 50724691 50724697 NFATC2_MA0152.1 8.741114833200648 - +chr1 51519495 51519501 NFATC2_MA0152.1 8.741114833200648 - +chr1 54200007 54200013 NFATC2_MA0152.1 8.741114833200649 + +chr1 54715961 54715967 NFATC2_MA0152.1 8.741114833200648 - +chr1 54965920 54965926 NFATC2_MA0152.1 8.741114833200648 - +chr1 55288152 55288158 NFATC2_MA0152.1 8.741114833200649 + +chr1 58546203 58546209 NFATC2_MA0152.1 8.741114833200648 - +chr1 58573762 58573768 NFATC2_MA0152.1 8.741114833200649 + +chr1 59007814 59007820 NFATC2_MA0152.1 8.741114833200648 - +chr1 59008185 59008191 NFATC2_MA0152.1 8.741114833200649 + +chr1 61076811 61076817 NFATC2_MA0152.1 8.741114833200648 - +chr1 62800595 62800601 NFATC2_MA0152.1 8.741114833200649 + +chr1 62810092 62810098 NFATC2_MA0152.1 8.741114833200648 - +chr1 63368222 63368228 NFATC2_MA0152.1 8.741114833200648 - +chr1 64172788 64172794 NFATC2_MA0152.1 8.741114833200649 + +chr1 65067758 65067764 NFATC2_MA0152.1 8.741114833200648 - +chr1 65895149 65895155 NFATC2_MA0152.1 8.741114833200648 - +chr1 65959021 65959027 NFATC2_MA0152.1 8.741114833200649 + +chr1 66247468 66247474 NFATC2_MA0152.1 8.741114833200648 - +chr1 66247859 66247865 NFATC2_MA0152.1 8.741114833200648 - +chr1 66276283 66276289 NFATC2_MA0152.1 8.741114833200648 - +chr1 66301285 66301291 NFATC2_MA0152.1 8.741114833200649 + +chr1 66396852 66396858 NFATC2_MA0152.1 8.741114833200648 - +chr1 66446408 66446414 NFATC2_MA0152.1 8.741114833200648 - +chr1 67194737 67194743 NFATC2_MA0152.1 8.741114833200648 - +chr1 67766618 67766624 NFATC2_MA0152.1 8.741114833200649 + +chr1 67766631 67766637 NFATC2_MA0152.1 8.741114833200649 + +chr1 68181017 68181023 NFATC2_MA0152.1 8.741114833200649 + +chr1 70685313 70685319 NFATC2_MA0152.1 8.741114833200649 + +chr1 71081200 71081206 NFATC2_MA0152.1 8.741114833200648 - +chr1 72433683 72433689 NFATC2_MA0152.1 8.741114833200648 - +chr1 74579690 74579696 NFATC2_MA0152.1 8.741114833200649 + +chr1 74674792 74674798 NFATC2_MA0152.1 8.741114833200648 - +chr1 74714343 74714349 NFATC2_MA0152.1 8.741114833200648 - +chr1 74734033 74734039 NFATC2_MA0152.1 8.741114833200649 + +chr1 74824645 74824651 NFATC2_MA0152.1 8.741114833200649 + +chr1 74858004 74858010 NFATC2_MA0152.1 8.741114833200648 - +chr1 75339501 75339507 NFATC2_MA0152.1 8.741114833200648 - +chr1 75909192 75909198 NFATC2_MA0152.1 8.741114833200649 + +chr1 76331253 76331259 NFATC2_MA0152.1 8.741114833200648 - +chr1 76939393 76939399 NFATC2_MA0152.1 8.741114833200649 + +chr1 77219853 77219859 NFATC2_MA0152.1 8.741114833200648 - +chr1 77413236 77413242 NFATC2_MA0152.1 8.741114833200649 + +chr1 77413945 77413951 NFATC2_MA0152.1 8.741114833200649 + +chr1 77539269 77539275 NFATC2_MA0152.1 8.741114833200648 - +chr1 77927293 77927299 NFATC2_MA0152.1 8.741114833200649 + +chr1 78088179 78088185 NFATC2_MA0152.1 8.741114833200648 - +chr1 78650159 78650165 NFATC2_MA0152.1 8.741114833200648 - +chr1 78651134 78651140 NFATC2_MA0152.1 8.741114833200649 + +chr1 79461222 79461228 NFATC2_MA0152.1 8.741114833200649 + +chr1 79694882 79694888 NFATC2_MA0152.1 8.741114833200648 - +chr1 81549293 81549299 NFATC2_MA0152.1 8.741114833200648 - +chr1 81598696 81598702 NFATC2_MA0152.1 8.741114833200648 - +chr1 81801138 81801144 NFATC2_MA0152.1 8.741114833200648 - +chr1 81801239 81801245 NFATC2_MA0152.1 8.741114833200648 - +chr1 82979859 82979865 NFATC2_MA0152.1 8.741114833200648 - +chr1 83405816 83405822 NFATC2_MA0152.1 8.741114833200648 - +chr1 83488210 83488216 NFATC2_MA0152.1 8.741114833200649 + +chr1 84573198 84573204 NFATC2_MA0152.1 8.741114833200649 + +chr1 84599427 84599433 NFATC2_MA0152.1 8.741114833200648 - +chr1 84995936 84995942 NFATC2_MA0152.1 8.741114833200648 - +chr1 85062518 85062524 NFATC2_MA0152.1 8.741114833200648 - +chr1 85298158 85298164 NFATC2_MA0152.1 8.741114833200649 + +chr1 85308523 85308529 NFATC2_MA0152.1 8.741114833200648 - +chr1 86915116 86915122 NFATC2_MA0152.1 8.741114833200648 - +chr1 87058178 87058184 NFATC2_MA0152.1 8.741114833200649 + +chr1 88867870 88867876 NFATC2_MA0152.1 8.741114833200649 + +chr1 89041236 89041242 NFATC2_MA0152.1 8.741114833200648 - +chr1 89669875 89669881 NFATC2_MA0152.1 8.741114833200648 - +chr1 89670568 89670574 NFATC2_MA0152.1 8.741114833200648 - +chr1 89692867 89692873 NFATC2_MA0152.1 8.741114833200648 - +chr1 89781913 89781919 NFATC2_MA0152.1 8.741114833200648 - +chr1 91166253 91166259 NFATC2_MA0152.1 8.741114833200649 + +chr1 92537124 92537130 NFATC2_MA0152.1 8.741114833200648 - +chr1 92537478 92537484 NFATC2_MA0152.1 8.741114833200649 + +chr1 92584272 92584278 NFATC2_MA0152.1 8.741114833200649 + +chr1 92832542 92832548 NFATC2_MA0152.1 8.741114833200649 + +chr1 93033774 93033780 NFATC2_MA0152.1 8.741114833200649 + +chr1 93878721 93878727 NFATC2_MA0152.1 8.741114833200649 + +chr1 94411559 94411565 NFATC2_MA0152.1 8.741114833200648 - +chr1 94962657 94962663 NFATC2_MA0152.1 8.741114833200649 + +chr1 95117135 95117141 NFATC2_MA0152.1 8.741114833200648 - +chr1 96515900 96515906 NFATC2_MA0152.1 8.741114833200649 + +chr1 97138807 97138813 NFATC2_MA0152.1 8.741114833200649 + +chr1 97848428 97848434 NFATC2_MA0152.1 8.741114833200649 + +chr1 99228157 99228163 NFATC2_MA0152.1 8.741114833200648 - +chr1 99786910 99786916 NFATC2_MA0152.1 8.741114833200649 + +chr1 100133204 100133210 NFATC2_MA0152.1 8.741114833200649 + +chr1 100133236 100133242 NFATC2_MA0152.1 8.741114833200648 - +chr1 100536085 100536091 NFATC2_MA0152.1 8.741114833200648 - +chr1 100896547 100896553 NFATC2_MA0152.1 8.741114833200649 + +chr1 101520835 101520841 NFATC2_MA0152.1 8.741114833200649 + +chr1 102174278 102174284 NFATC2_MA0152.1 8.741114833200648 - +chr1 102174312 102174318 NFATC2_MA0152.1 8.741114833200649 + +chr1 103514981 103514987 NFATC2_MA0152.1 8.741114833200648 - +chr1 103517527 103517533 NFATC2_MA0152.1 8.741114833200648 - +chr1 104593709 104593715 NFATC2_MA0152.1 8.741114833200648 - +chr1 104878784 104878790 NFATC2_MA0152.1 8.741114833200648 - +chr1 107459877 107459883 NFATC2_MA0152.1 8.741114833200649 + +chr1 107936196 107936202 NFATC2_MA0152.1 8.741114833200648 - +chr1 107936267 107936273 NFATC2_MA0152.1 8.741114833200648 - +chr1 109283606 109283612 NFATC2_MA0152.1 8.741114833200649 + +chr1 110210788 110210794 NFATC2_MA0152.1 8.741114833200649 + +chr1 110338966 110338972 NFATC2_MA0152.1 8.741114833200648 - +chr1 110339031 110339037 NFATC2_MA0152.1 8.741114833200648 - +chr1 110407773 110407779 NFATC2_MA0152.1 8.741114833200648 - +chr1 112619423 112619429 NFATC2_MA0152.1 8.741114833200648 - +chr1 112955680 112955686 NFATC2_MA0152.1 8.741114833200649 + +chr1 112957010 112957016 NFATC2_MA0152.1 8.741114833200648 - +chr1 113390230 113390236 NFATC2_MA0152.1 8.741114833200649 + +chr1 113759297 113759303 NFATC2_MA0152.1 8.741114833200648 - +chr1 113759368 113759374 NFATC2_MA0152.1 8.741114833200648 - +chr1 113784482 113784488 NFATC2_MA0152.1 8.741114833200649 + +chr1 113859534 113859540 NFATC2_MA0152.1 8.741114833200649 + +chr1 113859826 113859832 NFATC2_MA0152.1 8.741114833200648 - +chr1 115099459 115099465 NFATC2_MA0152.1 8.741114833200648 - +chr1 116111216 116111222 NFATC2_MA0152.1 8.741114833200648 - +chr1 116288463 116288469 NFATC2_MA0152.1 8.741114833200649 + +chr1 116504336 116504342 NFATC2_MA0152.1 8.741114833200649 + +chr1 116597301 116597307 NFATC2_MA0152.1 8.741114833200649 + +chr1 116597381 116597387 NFATC2_MA0152.1 8.741114833200648 - +chr1 118960263 118960269 NFATC2_MA0152.1 8.741114833200648 - +chr1 119140345 119140351 NFATC2_MA0152.1 8.741114833200649 + +chr1 120942642 120942648 NFATC2_MA0152.1 8.741114833200649 + +chr1 144419154 144419160 NFATC2_MA0152.1 8.741114833200649 + +chr1 146052196 146052202 NFATC2_MA0152.1 8.741114833200648 - +chr1 147085029 147085035 NFATC2_MA0152.1 8.741114833200649 + +chr1 147670696 147670702 NFATC2_MA0152.1 8.741114833200649 + +chr1 148334706 148334712 NFATC2_MA0152.1 8.741114833200648 - +chr1 148402757 148402763 NFATC2_MA0152.1 8.741114833200649 + +chr1 148459583 148459589 NFATC2_MA0152.1 8.741114833200648 - +chr1 149636808 149636814 NFATC2_MA0152.1 8.741114833200649 + +chr1 149997803 149997809 NFATC2_MA0152.1 8.741114833200649 + +chr1 150067662 150067668 NFATC2_MA0152.1 8.741114833200649 + +chr1 150293973 150293979 NFATC2_MA0152.1 8.741114833200649 + +chr1 151070608 151070614 NFATC2_MA0152.1 8.741114833200649 + +chr1 152908230 152908236 NFATC2_MA0152.1 8.741114833200648 - +chr1 153671559 153671565 NFATC2_MA0152.1 8.741114833200648 - +chr1 153671571 153671577 NFATC2_MA0152.1 8.741114833200649 + +chr1 155208797 155208803 NFATC2_MA0152.1 8.741114833200648 - +chr1 155227564 155227570 NFATC2_MA0152.1 8.741114833200648 - +chr1 155244690 155244696 NFATC2_MA0152.1 8.741114833200648 - +chr1 158204066 158204072 NFATC2_MA0152.1 8.741114833200648 - +chr1 158286526 158286532 NFATC2_MA0152.1 8.741114833200649 + +chr1 158830468 158830474 NFATC2_MA0152.1 8.741114833200649 + +chr1 159008920 159008926 NFATC2_MA0152.1 8.741114833200649 + +chr1 159009114 159009120 NFATC2_MA0152.1 8.741114833200649 + +chr1 159121844 159121850 NFATC2_MA0152.1 8.741114833200649 + +chr1 159839066 159839072 NFATC2_MA0152.1 8.741114833200648 - +chr1 161020875 161020881 NFATC2_MA0152.1 8.741114833200648 - +chr1 161186055 161186061 NFATC2_MA0152.1 8.741114833200649 + +chr1 161399787 161399793 NFATC2_MA0152.1 8.741114833200649 + +chr1 161524010 161524016 NFATC2_MA0152.1 8.741114833200648 - +chr1 161962431 161962437 NFATC2_MA0152.1 8.741114833200648 - +chr1 161962686 161962692 NFATC2_MA0152.1 8.741114833200649 + +chr1 162497717 162497723 NFATC2_MA0152.1 8.741114833200649 + +chr1 165598443 165598449 NFATC2_MA0152.1 8.741114833200649 + +chr1 165914491 165914497 NFATC2_MA0152.1 8.741114833200648 - +chr1 167500028 167500034 NFATC2_MA0152.1 8.741114833200649 + +chr1 167617892 167617898 NFATC2_MA0152.1 8.741114833200649 + +chr1 167628049 167628055 NFATC2_MA0152.1 8.741114833200649 + +chr1 168504458 168504464 NFATC2_MA0152.1 8.741114833200648 - +chr1 168553976 168553982 NFATC2_MA0152.1 8.741114833200649 + +chr1 168554119 168554125 NFATC2_MA0152.1 8.741114833200649 + +chr1 169139210 169139216 NFATC2_MA0152.1 8.741114833200649 + +chr1 169594648 169594654 NFATC2_MA0152.1 8.741114833200649 + +chr1 169712008 169712014 NFATC2_MA0152.1 8.741114833200649 + +chr1 171313555 171313561 NFATC2_MA0152.1 8.741114833200648 - +chr1 171485617 171485623 NFATC2_MA0152.1 8.741114833200649 + +chr1 172338504 172338510 NFATC2_MA0152.1 8.741114833200649 + +chr1 172391028 172391034 NFATC2_MA0152.1 8.741114833200649 + +chr1 173020689 173020695 NFATC2_MA0152.1 8.741114833200649 + +chr1 173020738 173020744 NFATC2_MA0152.1 8.741114833200648 - +chr1 174800130 174800136 NFATC2_MA0152.1 8.741114833200649 + +chr1 174815718 174815724 NFATC2_MA0152.1 8.741114833200649 + +chr1 174874600 174874606 NFATC2_MA0152.1 8.741114833200649 + +chr1 175023758 175023764 NFATC2_MA0152.1 8.741114833200648 - +chr1 175189096 175189102 NFATC2_MA0152.1 8.741114833200649 + +chr1 176193346 176193352 NFATC2_MA0152.1 8.741114833200648 - +chr1 177946018 177946024 NFATC2_MA0152.1 8.741114833200649 + diff --git a/demo/known_tfbs_chr1_hg38/NFATC3_MA0625.1.bed b/demo/known_tfbs_chr1_hg38/NFATC3_MA0625.1.bed new file mode 100644 index 0000000..b99e839 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/NFATC3_MA0625.1.bed @@ -0,0 +1,342 @@ +chr1 2577840 2577849 NFATC3_MA0625.1 7.688360866173513 - +chr1 3676951 3676960 NFATC3_MA0625.1 8.078725947592634 - +chr1 6359789 6359798 NFATC3_MA0625.1 8.529030616817781 - +chr1 8604428 8604437 NFATC3_MA0625.1 7.977479354887694 - +chr1 8629870 8629879 NFATC3_MA0625.1 7.577641305463864 + +chr1 9413734 9413743 NFATC3_MA0625.1 9.006965249413803 - +chr1 9539239 9539248 NFATC3_MA0625.1 7.886380787898020 + +chr1 9942782 9942791 NFATC3_MA0625.1 7.451758396552704 - +chr1 10495253 10495262 NFATC3_MA0625.1 8.264067234191939 + +chr1 11908737 11908746 NFATC3_MA0625.1 7.516134306414450 - +chr1 11908987 11908996 NFATC3_MA0625.1 7.642188738003955 + +chr1 11926463 11926472 NFATC3_MA0625.1 7.737250468212825 - +chr1 12079651 12079660 NFATC3_MA0625.1 8.646842735337804 - +chr1 16236405 16236414 NFATC3_MA0625.1 7.423397483547672 + +chr1 16905288 16905297 NFATC3_MA0625.1 7.733480711814737 + +chr1 17536610 17536619 NFATC3_MA0625.1 7.642188738003955 + +chr1 19477397 19477406 NFATC3_MA0625.1 7.577641305463864 - +chr1 22025276 22025285 NFATC3_MA0625.1 8.338600275366531 + +chr1 22026025 22026034 NFATC3_MA0625.1 8.327489051484717 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NFATC3_MA0625.1 8.086862119094416 - +chr1 38173246 38173255 NFATC3_MA0625.1 7.737250468212825 - +chr1 38173582 38173591 NFATC3_MA0625.1 7.423397483547671 - +chr1 39196225 39196234 NFATC3_MA0625.1 7.677249642291700 + +chr1 39667120 39667129 NFATC3_MA0625.1 8.338600275366531 + +chr1 40232500 40232509 NFATC3_MA0625.1 8.296072352992921 - +chr1 40532137 40532146 NFATC3_MA0625.1 7.886380787898019 - +chr1 41662440 41662449 NFATC3_MA0625.1 8.338600275366531 + +chr1 42846522 42846531 NFATC3_MA0625.1 8.327489051484717 - +chr1 45522047 45522056 NFATC3_MA0625.1 7.625094774973399 - +chr1 45550948 45550957 NFATC3_MA0625.1 7.737250468212825 + +chr1 46340974 46340983 NFATC3_MA0625.1 7.858053038798258 + +chr1 47333587 47333596 NFATC3_MA0625.1 8.454497575643188 - +chr1 47351662 47351671 NFATC3_MA0625.1 8.296072352992921 + +chr1 48498590 48498599 NFATC3_MA0625.1 7.640743888947958 - +chr1 50348858 50348867 NFATC3_MA0625.1 7.977479354887694 + +chr1 50724689 50724698 NFATC3_MA0625.1 8.728965356785650 - 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74674771 NFATC3_MA0625.1 7.695950446446768 - +chr1 74714341 74714350 NFATC3_MA0625.1 8.277292460545667 - +chr1 74734032 74734041 NFATC3_MA0625.1 8.919395698236901 + +chr1 74824644 74824653 NFATC3_MA0625.1 8.296072352992921 + +chr1 74858002 74858011 NFATC3_MA0625.1 7.470538288999959 - +chr1 74858013 74858022 NFATC3_MA0625.1 8.327489051484717 - +chr1 75339399 75339408 NFATC3_MA0625.1 7.497930524722262 - +chr1 75909191 75909200 NFATC3_MA0625.1 7.470538288999959 + +chr1 75986161 75986170 NFATC3_MA0625.1 8.454497575643190 + +chr1 76331251 76331260 NFATC3_MA0625.1 9.297082144530822 - +chr1 77219851 77219860 NFATC3_MA0625.1 9.487512485982073 - +chr1 77413235 77413244 NFATC3_MA0625.1 8.277292460545667 + +chr1 77413944 77413953 NFATC3_MA0625.1 7.516134306414450 + +chr1 77413989 77413998 NFATC3_MA0625.1 7.688360866173515 + +chr1 77770805 77770814 NFATC3_MA0625.1 7.695950446446769 + +chr1 77979429 77979438 NFATC3_MA0625.1 8.438848461668631 + +chr1 78004744 78004753 NFATC3_MA0625.1 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86914119 NFATC3_MA0625.1 7.815525116424649 + +chr1 87058177 87058186 NFATC3_MA0625.1 8.654978906839586 + +chr1 87151760 87151769 NFATC3_MA0625.1 7.423397483547672 + +chr1 88867869 88867878 NFATC3_MA0625.1 8.105642011541670 + +chr1 88868317 88868326 NFATC3_MA0625.1 7.949802605190797 + +chr1 89022288 89022297 NFATC3_MA0625.1 8.338600275366531 + +chr1 89041234 89041243 NFATC3_MA0625.1 8.728965356785650 - +chr1 89669873 89669882 NFATC3_MA0625.1 8.646842735337804 - +chr1 89693967 89693976 NFATC3_MA0625.1 7.613827824998922 + +chr1 89781911 89781920 NFATC3_MA0625.1 7.977479354887694 - +chr1 89995567 89995576 NFATC3_MA0625.1 7.949802605190797 - +chr1 92484926 92484935 NFATC3_MA0625.1 7.695950446446769 + +chr1 92537122 92537131 NFATC3_MA0625.1 8.728965356785650 - +chr1 92537419 92537428 NFATC3_MA0625.1 7.497930524722262 - +chr1 92537477 92537486 NFATC3_MA0625.1 8.654978906839586 + +chr1 92975180 92975189 NFATC3_MA0625.1 7.949802605190797 - +chr1 92975186 92975195 NFATC3_MA0625.1 7.577641305463864 + +chr1 93033773 93033782 NFATC3_MA0625.1 8.379353705904061 + +chr1 93878720 93878729 NFATC3_MA0625.1 7.451758396552704 + +chr1 94962656 94962665 NFATC3_MA0625.1 8.728965356785650 + +chr1 96515875 96515884 NFATC3_MA0625.1 7.975865157318283 - +chr1 97138806 97138815 NFATC3_MA0625.1 7.443622225050922 + +chr1 97461515 97461524 NFATC3_MA0625.1 8.338600275366531 - +chr1 97848427 97848436 NFATC3_MA0625.1 7.923911053265988 + +chr1 97864744 97864753 NFATC3_MA0625.1 7.486819300840449 - +chr1 97920675 97920684 NFATC3_MA0625.1 7.480366592504338 - +chr1 99786909 99786918 NFATC3_MA0625.1 7.439075618431957 + +chr1 100037727 100037736 NFATC3_MA0625.1 8.383641904169821 - +chr1 101178756 101178765 NFATC3_MA0625.1 8.338600275366531 - +chr1 101178936 101178945 NFATC3_MA0625.1 7.621963996500704 + +chr1 101520834 101520843 NFATC3_MA0625.1 8.646842735337804 + +chr1 102174276 102174285 NFATC3_MA0625.1 7.733480711814737 - +chr1 102174311 102174320 NFATC3_MA0625.1 7.470538288999959 + +chr1 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8.649484179546187 + +chr1 24392330 24392339 NFIA_MA0670.1 8.473281231345563 - +chr1 24415789 24415798 NFIA_MA0670.1 8.327683507626936 - +chr1 24643416 24643425 NFIA_MA0670.1 8.487695721727784 - +chr1 25032238 25032247 NFIA_MA0670.1 8.385720234403074 + +chr1 28247379 28247388 NFIA_MA0670.1 8.327683507626936 + +chr1 28649038 28649047 NFIA_MA0670.1 8.737045176488678 - +chr1 32108349 32108358 NFIA_MA0670.1 8.624362111606509 - +chr1 34530593 34530602 NFIA_MA0670.1 8.866498653249499 + +chr1 36149957 36149966 NFIA_MA0670.1 8.487695721727784 + +chr1 37507975 37507984 NFIA_MA0670.1 8.344996706947642 + +chr1 38475082 38475091 NFIA_MA0670.1 8.748354326345945 - +chr1 40097601 40097610 NFIA_MA0670.1 8.790753278431916 - +chr1 40628502 40628511 NFIA_MA0670.1 8.518062024764719 - +chr1 40862564 40862573 NFIA_MA0670.1 9.101404848252670 - +chr1 41574513 41574522 NFIA_MA0670.1 8.547789124571826 + +chr1 41752338 41752347 NFIA_MA0670.1 8.487695721727784 + +chr1 44739710 44739719 NFIA_MA0670.1 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8.790753278431916 + +chr1 66381002 66381011 NFIA_MA0670.1 8.987680866705647 - +chr1 66758004 66758013 NFIA_MA0670.1 8.566126501036099 + +chr1 66758162 66758171 NFIA_MA0670.1 8.369198912762368 - +chr1 67333359 67333368 NFIA_MA0670.1 8.788053676657809 - +chr1 67430892 67430901 NFIA_MA0670.1 9.285140112697187 + +chr1 68057949 68057958 NFIA_MA0670.1 8.709010202327139 + +chr1 70359320 70359329 NFIA_MA0670.1 8.757687373620874 - +chr1 70412014 70412023 NFIA_MA0670.1 8.543585806139424 + +chr1 71967868 71967877 NFIA_MA0670.1 8.645155554713288 + +chr1 74652783 74652792 NFIA_MA0670.1 8.615002556124107 + +chr1 74681562 74681571 NFIA_MA0670.1 8.642455952939180 - +chr1 74732670 74732679 NFIA_MA0670.1 8.354356262430043 + +chr1 74824813 74824822 NFIA_MA0670.1 8.506799362049419 + +chr1 75339195 75339204 NFIA_MA0670.1 8.463141033851194 - +chr1 76270533 76270542 NFIA_MA0670.1 8.653687497978590 - +chr1 76425809 76425818 NFIA_MA0670.1 8.925440821497107 + +chr1 76668161 76668170 NFIA_MA0670.1 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6.507706031189478 + +chr1 3900455 3900465 NFIC_MA0161.2 8.693849422170109 + +chr1 3910782 3910792 NFIC_MA0161.2 8.681686596557606 - +chr1 6554448 6554458 NFIC_MA0161.2 6.497631527285029 - +chr1 7953994 7954004 NFIC_MA0161.2 8.693849422170109 - +chr1 8764476 8764486 NFIC_MA0161.2 9.654060638521599 - +chr1 9951032 9951042 NFIC_MA0161.2 6.507706031189478 - +chr1 10965692 10965702 NFIC_MA0161.2 6.758792224691216 - +chr1 15697335 15697345 NFIC_MA0161.2 8.979952860474381 + +chr1 15847324 15847334 NFIC_MA0161.2 8.704496397678401 + +chr1 15847627 15847637 NFIC_MA0161.2 8.722040707168993 + +chr1 16367138 16367148 NFIC_MA0161.2 8.680341778205989 + +chr1 16728257 16728267 NFIC_MA0161.2 6.507706031189478 - +chr1 19251693 19251703 NFIC_MA0161.2 8.697886087696581 + +chr1 19312629 19312639 NFIC_MA0161.2 8.656916838469032 + +chr1 19485663 19485673 NFIC_MA0161.2 6.529074108885878 - +chr1 20081071 20081081 NFIC_MA0161.2 8.577167103138390 + +chr1 23909231 23909241 NFIC_MA0161.2 9.064682509084644 + +chr1 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36386700 NFIC_MA0161.2 8.674461147959624 + +chr1 38475081 38475091 NFIC_MA0161.2 9.029831073138125 + +chr1 38559665 38559675 NFIC_MA0161.2 9.668162732866413 - +chr1 39195929 39195939 NFIC_MA0161.2 8.565004277525887 - +chr1 39598769 39598779 NFIC_MA0161.2 8.577167103138390 - +chr1 40450682 40450692 NFIC_MA0161.2 6.617042843702488 + +chr1 40628501 40628511 NFIC_MA0161.2 8.632433247518920 + +chr1 40699565 40699575 NFIC_MA0161.2 6.652507036099312 - +chr1 41728454 41728464 NFIC_MA0161.2 8.913977721080496 - +chr1 41752338 41752348 NFIC_MA0161.2 9.258228212500292 - +chr1 41868778 41868788 NFIC_MA0161.2 6.665993220320842 - +chr1 42036109 42036119 NFIC_MA0161.2 9.167067932963384 + +chr1 42456862 42456872 NFIC_MA0161.2 6.460369972106252 + +chr1 42931769 42931779 NFIC_MA0161.2 6.453893717408095 - +chr1 44684728 44684738 NFIC_MA0161.2 6.611756663836815 - +chr1 44739710 44739720 NFIC_MA0161.2 8.669694802697697 - +chr1 44739892 44739902 NFIC_MA0161.2 6.547152341851913 + +chr1 45011184 45011194 NFIC_MA0161.2 9.848930472053397 - +chr1 45551147 45551157 NFIC_MA0161.2 8.891167919959699 - +chr1 50873849 50873859 NFIC_MA0161.2 6.681220620314422 - +chr1 51284789 51284799 NFIC_MA0161.2 8.956219189538892 - +chr1 51519087 51519097 NFIC_MA0161.2 6.670051345589904 - +chr1 51519115 51519125 NFIC_MA0161.2 6.670051345589904 - +chr1 51569723 51569733 NFIC_MA0161.2 9.262845726508594 + +chr1 55205131 55205141 NFIC_MA0161.2 6.707112850687123 - +chr1 56045356 56045366 NFIC_MA0161.2 9.344160861437135 - +chr1 56579631 56579641 NFIC_MA0161.2 6.817605808273942 + +chr1 58816302 58816312 NFIC_MA0161.2 6.515175836775621 - +chr1 58968894 58968904 NFIC_MA0161.2 6.596490971704161 - +chr1 59008041 59008051 NFIC_MA0161.2 8.577167103138390 - +chr1 59025988 59025998 NFIC_MA0161.2 6.630490735784943 - +chr1 59046624 59046634 NFIC_MA0161.2 8.687239112188289 - +chr1 59266966 59266976 NFIC_MA0161.2 6.524167406939634 + +chr1 59433113 59433123 NFIC_MA0161.2 8.681686596557606 + +chr1 59926582 59926592 NFIC_MA0161.2 8.956219189538892 - +chr1 62801199 62801209 NFIC_MA0161.2 9.466945566032599 - +chr1 63368100 63368110 NFIC_MA0161.2 8.595500663817843 + +chr1 63892973 63892983 NFIC_MA0161.2 9.165700512940985 - +chr1 64223724 64223734 NFIC_MA0161.2 8.697886087696581 + +chr1 64987621 64987631 NFIC_MA0161.2 8.565004277525887 + +chr1 65687995 65688005 NFIC_MA0161.2 6.861988359501407 + +chr1 65812245 65812255 NFIC_MA0161.2 6.681220620314422 + +chr1 66283301 66283311 NFIC_MA0161.2 6.460063347189711 - +chr1 66374903 66374913 NFIC_MA0161.2 6.694950025074620 + +chr1 66402343 66402353 NFIC_MA0161.2 6.718153204015499 + +chr1 67054550 67054560 NFIC_MA0161.2 6.525534826962031 - +chr1 67333358 67333368 NFIC_MA0161.2 9.274015001233112 + +chr1 67430892 67430902 NFIC_MA0161.2 9.437903010339788 - +chr1 67736079 67736089 NFIC_MA0161.2 8.566787079602733 + +chr1 67736256 67736266 NFIC_MA0161.2 8.763861227090469 - +chr1 68057949 68057959 NFIC_MA0161.2 8.627874282776222 - +chr1 69567252 69567262 NFIC_MA0161.2 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100266309 NFIC_TLX1_MA0119.1 -1.966140133271808 + +chr1 100536222 100536235 NFIC_TLX1_MA0119.1 -1.293200302752314 + +chr1 100895902 100895915 NFIC_TLX1_MA0119.1 -1.070056215838755 + +chr1 100896730 100896743 NFIC_TLX1_MA0119.1 -1.293194052928091 - +chr1 101238232 101238245 NFIC_TLX1_MA0119.1 -3.393242530710414 + +chr1 101389724 101389737 NFIC_TLX1_MA0119.1 -0.376917070812535 + +chr1 101389762 101389775 NFIC_TLX1_MA0119.1 -1.629666200259847 + +chr1 101408110 101408123 NFIC_TLX1_MA0119.1 -0.194598430648876 - +chr1 102434954 102434967 NFIC_TLX1_MA0119.1 -0.020246948249903 - +chr1 106072929 106072942 NFIC_TLX1_MA0119.1 -2.140488490714726 - +chr1 107057064 107057077 NFIC_TLX1_MA0119.1 -2.545949432199626 + +chr1 107057555 107057568 NFIC_TLX1_MA0119.1 -1.783818368152094 + +chr1 108200481 108200494 NFIC_TLX1_MA0119.1 -3.393242530710412 - +chr1 108692410 108692423 NFIC_TLX1_MA0119.1 -1.496135254062402 - +chr1 111600475 111600488 NFIC_TLX1_MA0119.1 8.589702411479463 + +chr1 111739728 111739741 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NFIL3_MA0025.1 8.095741429795078 + +chr1 25430430 25430440 NFIL3_MA0025.1 9.530809223759128 - +chr1 25430433 25430443 NFIL3_MA0025.1 7.754804420978981 + +chr1 27660176 27660186 NFIL3_MA0025.1 7.562435009372210 - +chr1 28144706 28144716 NFIL3_MA0025.1 10.734776194783327 - +chr1 28247426 28247436 NFIL3_MA0025.1 8.902202022666593 + +chr1 42456681 42456691 NFIL3_MA0025.1 7.736786491771182 - +chr1 44030255 44030265 NFIL3_MA0025.1 8.701864500919624 - +chr1 44800244 44800254 NFIL3_MA0025.1 7.690267566496923 + +chr1 51284812 51284822 NFIL3_MA0025.1 9.395009181488945 - +chr1 54376682 54376692 NFIL3_MA0025.1 8.516943193263689 - +chr1 57168183 57168193 NFIL3_MA0025.1 7.061660365404387 - +chr1 60281131 60281141 NFIL3_MA0025.1 7.754805045973709 - +chr1 60281134 60281144 NFIL3_MA0025.1 8.971196114381980 + +chr1 60391174 60391184 NFIL3_MA0025.1 7.307286796693619 + +chr1 61641688 61641698 NFIL3_MA0025.1 7.777288550946971 + +chr1 62810611 62810621 NFIL3_MA0025.1 7.015150403656992 - +chr1 63893327 63893337 NFIL3_MA0025.1 7.353796758441016 - +chr1 64172413 64172423 NFIL3_MA0025.1 8.516943193263689 + +chr1 64882922 64882932 NFIL3_MA0025.1 7.333602657510372 + +chr1 65147546 65147556 NFIL3_MA0025.1 9.076553505065565 - +chr1 65147549 65147559 NFIL3_MA0025.1 9.413024313121472 + +chr1 66726143 66726153 NFIL3_MA0025.1 7.015149778662265 - +chr1 66954342 66954352 NFIL3_MA0025.1 10.239699939888238 - +chr1 67214407 67214417 NFIL3_MA0025.1 7.872589331616638 + +chr1 67333352 67333362 NFIL3_MA0025.1 8.095741429795078 + +chr1 68347754 68347764 NFIL3_MA0025.1 7.962209858602908 - +chr1 69566985 69566995 NFIL3_MA0025.1 8.902202022666593 + +chr1 70359275 70359285 NFIL3_MA0025.1 7.823798512694370 - +chr1 74714449 74714459 NFIL3_MA0025.1 7.643756979754800 - +chr1 74714647 74714657 NFIL3_MA0025.1 8.835396072111797 - +chr1 74767818 74767828 NFIL3_MA0025.1 9.076556302640837 - +chr1 74767821 74767831 NFIL3_MA0025.1 8.383411622071517 + +chr1 74857979 74857989 NFIL3_MA0025.1 7.132934689299921 - +chr1 75614698 75614708 NFIL3_MA0025.1 8.365393692863718 + +chr1 75745494 75745504 NFIL3_MA0025.1 8.206788871019262 - +chr1 76331093 76331103 NFIL3_MA0025.1 7.690267566496923 + +chr1 77672454 77672464 NFIL3_MA0025.1 7.451387568148027 + +chr1 77682902 77682912 NFIL3_MA0025.1 8.336901660324120 - +chr1 77927902 77927912 NFIL3_MA0025.1 7.962209858602908 - +chr1 78655766 78655776 NFIL3_MA0025.1 7.061660365404387 - +chr1 78655769 78655779 NFIL3_MA0025.1 9.530809223759128 + +chr1 79040431 79040441 NFIL3_MA0025.1 8.447949101548302 + +chr1 79040950 79040960 NFIL3_MA0025.1 8.516943193263689 + +chr1 79042384 79042394 NFIL3_MA0025.1 8.447949101548302 + +chr1 79053149 79053159 NFIL3_MA0025.1 8.000430852268213 - +chr1 79469064 79469074 NFIL3_MA0025.1 7.002821899995063 - +chr1 79519638 79519648 NFIL3_MA0025.1 7.061660365404387 - +chr1 79519641 79519651 NFIL3_MA0025.1 10.734775569788601 + +chr1 80640844 80640854 NFIL3_MA0025.1 7.195191311601834 - +chr1 80640847 80640857 NFIL3_MA0025.1 8.971196114381980 + 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NFIL3_MA0025.1 7.643756979754800 - +chr1 146038281 146038291 NFIL3_MA0025.1 9.595346078241187 - +chr1 146038284 146038294 NFIL3_MA0025.1 9.769697560640159 + +chr1 146387822 146387832 NFIL3_MA0025.1 7.084144495372378 + +chr1 148038739 148038749 NFIL3_MA0025.1 7.643756979754800 - +chr1 148522805 148522815 NFIL3_MA0025.1 7.084143870377651 + diff --git a/demo/known_tfbs_chr1_hg38/NFIX_MA0671.1.bed b/demo/known_tfbs_chr1_hg38/NFIX_MA0671.1.bed new file mode 100644 index 0000000..bb57828 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/NFIX_MA0671.1.bed @@ -0,0 +1,119 @@ +chr1 1659319 1659327 NFIX_MA0671.1 7.338655250348115 + +chr1 1724630 1724638 NFIX_MA0671.1 7.338655250348115 + +chr1 3900457 3900465 NFIX_MA0671.1 7.506345118739000 - +chr1 3910782 3910790 NFIX_MA0671.1 7.506345118739000 + +chr1 6784988 6784996 NFIX_MA0671.1 7.166300150442892 + +chr1 7953994 7954002 NFIX_MA0671.1 7.506345118739000 + +chr1 8764476 8764484 NFIX_MA0671.1 7.189632193357853 + +chr1 12078680 12078688 NFIX_MA0671.1 7.414261306156397 + +chr1 19312631 19312639 NFIX_MA0671.1 7.179937221525901 - +chr1 20081073 20081081 NFIX_MA0671.1 7.206521464135884 - +chr1 21294070 21294078 NFIX_MA0671.1 7.114437651553280 + +chr1 24643417 24643425 NFIX_MA0671.1 7.338655250348117 - +chr1 26318116 26318124 NFIX_MA0671.1 7.189632193357854 - +chr1 28649039 28649047 NFIX_MA0671.1 7.104742679721329 - +chr1 31065829 31065837 NFIX_MA0671.1 7.179067552373222 + +chr1 32108350 32108358 NFIX_MA0671.1 7.516040090570953 - +chr1 33350237 33350245 NFIX_MA0671.1 7.414261306156397 + +chr1 34530593 34530601 NFIX_MA0671.1 7.216216435967835 + +chr1 36149957 36149965 NFIX_MA0671.1 7.338655250348115 + +chr1 36386692 36386700 NFIX_MA0671.1 7.189632193357854 - +chr1 37931972 37931980 NFIX_MA0671.1 7.169372580541271 - +chr1 38475083 38475091 NFIX_MA0671.1 7.113626703245669 - +chr1 39195929 39195937 NFIX_MA0671.1 7.206521464135883 + +chr1 39598769 39598777 NFIX_MA0671.1 7.206521464135883 + +chr1 40628503 40628511 NFIX_MA0671.1 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7.506345118739000 - +chr1 100077245 100077253 NFIX_MA0671.1 7.179067552373223 - +chr1 100377573 100377581 NFIX_MA0671.1 7.113626703245669 - +chr1 101136951 101136959 NFIX_MA0671.1 7.114437651553281 - +chr1 101179381 101179389 NFIX_MA0671.1 7.311671573434229 + +chr1 101371382 101371390 NFIX_MA0671.1 7.104742679721329 - +chr1 101388904 101388912 NFIX_MA0671.1 7.103062062261038 - +chr1 101389147 101389155 NFIX_MA0671.1 7.216216435967835 + +chr1 101438005 101438013 NFIX_MA0671.1 7.179067552373223 - +chr1 103106857 103106865 NFIX_MA0671.1 7.179937221525901 - +chr1 104759745 104759753 NFIX_MA0671.1 7.311671573434229 + +chr1 104932256 104932264 NFIX_MA0671.1 7.338655250348117 - +chr1 104987626 104987634 NFIX_MA0671.1 7.236876465933561 - +chr1 106072936 106072944 NFIX_MA0671.1 7.195956823151253 + +chr1 107010947 107010955 NFIX_MA0671.1 7.205651794983205 + +chr1 107140684 107140692 NFIX_MA0671.1 7.506345118739000 + +chr1 107459523 107459531 NFIX_MA0671.1 7.104742679721328 + +chr1 107950297 107950305 NFIX_MA0671.1 7.236876465933561 - +chr1 110964157 110964165 NFIX_MA0671.1 7.206521464135883 + +chr1 111346611 111346619 NFIX_MA0671.1 7.206521464135884 - +chr1 114670486 114670494 NFIX_MA0671.1 7.495780477754369 + +chr1 116111112 116111120 NFIX_MA0671.1 7.311671573434230 - +chr1 116795165 116795173 NFIX_MA0671.1 7.114437651553281 - +chr1 117605854 117605862 NFIX_MA0671.1 7.206521464135884 - +chr1 119266642 119266650 NFIX_MA0671.1 7.179937221525901 + +chr1 120535138 120535146 NFIX_MA0671.1 7.169372580541269 + +chr1 144103435 144103443 NFIX_MA0671.1 7.179067552373223 - diff --git a/demo/known_tfbs_chr1_hg38/NFKB1_MA0105.4.bed b/demo/known_tfbs_chr1_hg38/NFKB1_MA0105.4.bed new file mode 100644 index 0000000..aae88a4 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/NFKB1_MA0105.4.bed @@ -0,0 +1,699 @@ +chr1 779129 779141 NFKB1_MA0105.4 3.004668731704631 - +chr1 779130 779142 NFKB1_MA0105.4 3.004668731704633 + +chr1 1505069 1505081 NFKB1_MA0105.4 1.291756891662212 + +chr1 1919445 1919457 NFKB1_MA0105.4 2.131562101582972 + +chr1 1919445 1919457 NFKB1_MA0105.4 2.306746191338218 - +chr1 2050285 2050297 NFKB1_MA0105.4 2.068948262117055 + +chr1 2050285 2050297 NFKB1_MA0105.4 2.320310265845486 - +chr1 2194971 2194983 NFKB1_MA0105.4 5.350092864634479 + +chr1 2194971 2194983 NFKB1_MA0105.4 5.054046935120844 - +chr1 2548630 2548642 NFKB1_MA0105.4 2.165693171172145 + +chr1 2548630 2548642 NFKB1_MA0105.4 3.775107762718993 - +chr1 2556285 2556297 NFKB1_MA0105.4 3.444101332839415 + +chr1 2556285 2556297 NFKB1_MA0105.4 4.291036589641367 - +chr1 2556286 2556298 NFKB1_MA0105.4 6.376051371710131 + +chr1 2556286 2556298 NFKB1_MA0105.4 6.732432419558532 - +chr1 2577660 2577672 NFKB1_MA0105.4 4.063702859370511 + +chr1 2577660 2577672 NFKB1_MA0105.4 3.799043883684832 - +chr1 2585697 2585709 NFKB1_MA0105.4 3.253258731623347 + +chr1 2585697 2585709 NFKB1_MA0105.4 4.241716931381312 - +chr1 2585698 2585710 NFKB1_MA0105.4 6.376051371710131 + +chr1 2585698 2585710 NFKB1_MA0105.4 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6026897 6026909 NFKB1_MA0105.4 5.868504325110380 - +chr1 6625655 6625667 NFKB1_MA0105.4 2.374840054341785 + +chr1 6625655 6625667 NFKB1_MA0105.4 3.357460773371208 - +chr1 6785034 6785046 NFKB1_MA0105.4 2.370266583270622 + +chr1 6785034 6785046 NFKB1_MA0105.4 2.744223345164512 - +chr1 6785062 6785074 NFKB1_MA0105.4 4.150823222082456 - +chr1 8817316 8817328 NFKB1_MA0105.4 3.270836257155463 + +chr1 8817316 8817328 NFKB1_MA0105.4 3.971332795006381 - +chr1 9037540 9037552 NFKB1_MA0105.4 1.598237037833906 - +chr1 9164068 9164080 NFKB1_MA0105.4 1.834333581721456 - +chr1 9687426 9687438 NFKB1_MA0105.4 1.474293048506393 - +chr1 9687427 9687439 NFKB1_MA0105.4 8.596016352479078 + +chr1 9687427 9687439 NFKB1_MA0105.4 8.462823578424214 - +chr1 9943281 9943293 NFKB1_MA0105.4 4.727225172199046 - +chr1 9943282 9943294 NFKB1_MA0105.4 1.821071332106661 + +chr1 9943282 9943294 NFKB1_MA0105.4 1.718714008694825 - +chr1 10033146 10033158 NFKB1_MA0105.4 3.803741212157011 + +chr1 10033146 10033158 NFKB1_MA0105.4 3.774930448315342 - +chr1 10210273 10210285 NFKB1_MA0105.4 1.382137377124022 + +chr1 10430345 10430357 NFKB1_MA0105.4 5.351083635183829 + +chr1 10430345 10430357 NFKB1_MA0105.4 4.781574543263729 - +chr1 10694184 10694196 NFKB1_MA0105.4 1.655508646207744 + +chr1 10694184 10694196 NFKB1_MA0105.4 2.597820091538584 - +chr1 10694203 10694215 NFKB1_MA0105.4 2.122186518108097 + +chr1 10694203 10694215 NFKB1_MA0105.4 1.317741253542906 - +chr1 10965541 10965553 NFKB1_MA0105.4 1.265174100278173 + +chr1 10965541 10965553 NFKB1_MA0105.4 2.774133959602631 - +chr1 10965677 10965689 NFKB1_MA0105.4 4.600141603174895 + +chr1 10965677 10965689 NFKB1_MA0105.4 5.706333936763795 - +chr1 10985447 10985459 NFKB1_MA0105.4 3.674653030496604 + +chr1 10985447 10985459 NFKB1_MA0105.4 2.266147903394534 - +chr1 11479218 11479230 NFKB1_MA0105.4 6.683112761298477 + +chr1 11479218 11479230 NFKB1_MA0105.4 6.185208770494063 - +chr1 11681085 11681097 NFKB1_MA0105.4 2.997834575281467 + +chr1 12078950 12078962 NFKB1_MA0105.4 4.577890791109474 + +chr1 12078950 12078962 NFKB1_MA0105.4 5.602323659207806 - +chr1 12079622 12079634 NFKB1_MA0105.4 8.677139849738177 + +chr1 12079622 12079634 NFKB1_MA0105.4 8.556856288101915 - +chr1 14600029 14600041 NFKB1_MA0105.4 4.318664258411005 + +chr1 14600029 14600041 NFKB1_MA0105.4 4.882142033117966 - +chr1 15834774 15834786 NFKB1_MA0105.4 4.091880112989441 + +chr1 15834774 15834786 NFKB1_MA0105.4 3.336434073944776 - +chr1 15975945 15975957 NFKB1_MA0105.4 4.004383689375623 + +chr1 15975945 15975957 NFKB1_MA0105.4 4.633733744126465 - +chr1 16441229 16441241 NFKB1_MA0105.4 2.131177504944911 - +chr1 16613739 16613751 NFKB1_MA0105.4 3.997845713812660 + +chr1 16613739 16613751 NFKB1_MA0105.4 4.618417950187049 - +chr1 16644788 16644800 NFKB1_MA0105.4 1.959237297645465 - +chr1 16914070 16914082 NFKB1_MA0105.4 2.968933381245468 + +chr1 16914070 16914082 NFKB1_MA0105.4 3.083290981566539 - +chr1 17536297 17536309 NFKB1_MA0105.4 1.265174100278173 + +chr1 17536297 17536309 NFKB1_MA0105.4 2.774133959602631 - +chr1 19251744 19251756 NFKB1_MA0105.4 4.150676335458056 + +chr1 19251744 19251756 NFKB1_MA0105.4 3.952232667073409 - +chr1 19596722 19596734 NFKB1_MA0105.4 1.371617976824407 + +chr1 19597186 19597198 NFKB1_MA0105.4 1.743249542048150 + +chr1 19597186 19597198 NFKB1_MA0105.4 1.469747512376651 - +chr1 21294790 21294802 NFKB1_MA0105.4 1.743249542048150 + +chr1 21294790 21294802 NFKB1_MA0105.4 1.469747512376651 - +chr1 21334496 21334508 NFKB1_MA0105.4 2.995148700662530 - +chr1 21762683 21762695 NFKB1_MA0105.4 1.265174100278173 + +chr1 21762683 21762695 NFKB1_MA0105.4 2.774133959602631 - +chr1 21783198 21783210 NFKB1_MA0105.4 1.558058685710082 - +chr1 22025543 22025555 NFKB1_MA0105.4 1.707182695834675 - +chr1 22052824 22052836 NFKB1_MA0105.4 1.302338247780834 + +chr1 22052824 22052836 NFKB1_MA0105.4 2.263850613491576 - +chr1 23369058 23369070 NFKB1_MA0105.4 2.751215882429292 + +chr1 23369058 23369070 NFKB1_MA0105.4 3.152893621258928 - 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111406436 NFKB1_MA0105.4 5.795563772288912 + +chr1 111406424 111406436 NFKB1_MA0105.4 5.284881623748015 - +chr1 111739282 111739294 NFKB1_MA0105.4 2.456990504610601 + +chr1 111739282 111739294 NFKB1_MA0105.4 3.723972688756659 - +chr1 112674798 112674810 NFKB1_MA0105.4 3.270836257155463 + +chr1 112674798 112674810 NFKB1_MA0105.4 3.971332795006381 - +chr1 112955731 112955743 NFKB1_MA0105.4 4.436884515145649 + +chr1 112955731 112955743 NFKB1_MA0105.4 4.763921776383322 - +chr1 113930122 113930134 NFKB1_MA0105.4 1.278195437013888 + +chr1 114670200 114670212 NFKB1_MA0105.4 8.834298067894482 + +chr1 114670200 114670212 NFKB1_MA0105.4 7.062294888310666 - +chr1 114716414 114716426 NFKB1_MA0105.4 1.472607842164021 + +chr1 114716414 114716426 NFKB1_MA0105.4 2.402325079975237 - +chr1 115976713 115976725 NFKB1_MA0105.4 1.564728230228360 - +chr1 116628682 116628694 NFKB1_MA0105.4 1.620731767457428 + +chr1 118136720 118136732 NFKB1_MA0105.4 1.965263222051346 + +chr1 118960154 118960166 NFKB1_MA0105.4 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203649600 NFKB1_MA0105.4 5.364423158906876 + +chr1 203649588 203649600 NFKB1_MA0105.4 5.728666588496742 - +chr1 203795479 203795491 NFKB1_MA0105.4 1.599043357009687 + +chr1 203795479 203795491 NFKB1_MA0105.4 2.267613049208995 - +chr1 204494267 204494279 NFKB1_MA0105.4 2.287216278352118 + +chr1 204494267 204494279 NFKB1_MA0105.4 2.077273949454750 - +chr1 204495160 204495172 NFKB1_MA0105.4 12.099716835660832 + +chr1 204495160 204495172 NFKB1_MA0105.4 12.752150682077461 - +chr1 204495161 204495173 NFKB1_MA0105.4 2.497985429934566 + +chr1 204495161 204495173 NFKB1_MA0105.4 1.595074066656003 - +chr1 205631644 205631656 NFKB1_MA0105.4 7.085727841388036 + +chr1 205631644 205631656 NFKB1_MA0105.4 7.684086564414839 - +chr1 205775273 205775285 NFKB1_MA0105.4 3.052729544519316 + +chr1 205775273 205775285 NFKB1_MA0105.4 3.924057274448559 - +chr1 206050901 206050913 NFKB1_MA0105.4 3.737912001704669 + +chr1 206050901 206050913 NFKB1_MA0105.4 2.714637475204092 - +chr1 206202961 206202973 NFKB1_MA0105.4 3.554382966423981 + +chr1 206202961 206202973 NFKB1_MA0105.4 4.962023128425244 - +chr1 206685860 206685872 NFKB1_MA0105.4 6.031587785159837 + +chr1 206685860 206685872 NFKB1_MA0105.4 7.400823439008092 - +chr1 207321886 207321898 NFKB1_MA0105.4 9.963218269532675 + +chr1 207321886 207321898 NFKB1_MA0105.4 9.883074459468425 - +chr1 208244768 208244780 NFKB1_MA0105.4 5.177492368403369 + +chr1 208244768 208244780 NFKB1_MA0105.4 5.893538325395757 - +chr1 208244769 208244781 NFKB1_MA0105.4 7.355280396014742 + +chr1 208244769 208244781 NFKB1_MA0105.4 7.091262943727545 - +chr1 209108057 209108069 NFKB1_MA0105.4 2.598876098596213 + +chr1 209134109 209134121 NFKB1_MA0105.4 3.384073273607322 + +chr1 209134109 209134121 NFKB1_MA0105.4 2.976837195316755 - +chr1 209607514 209607526 NFKB1_MA0105.4 6.466710602491184 + +chr1 209607514 209607526 NFKB1_MA0105.4 7.813546497644081 - +chr1 209673358 209673370 NFKB1_MA0105.4 5.456621223126742 + +chr1 209673358 209673370 NFKB1_MA0105.4 3.747157553810301 - +chr1 209769563 209769575 NFKB1_MA0105.4 6.413705189537622 + +chr1 209769563 209769575 NFKB1_MA0105.4 6.694778601731042 - +chr1 210685132 210685144 NFKB1_MA0105.4 2.205897868237078 + +chr1 210685132 210685144 NFKB1_MA0105.4 3.607491808322071 - +chr1 210685162 210685174 NFKB1_MA0105.4 2.585802151165096 + +chr1 210685162 210685174 NFKB1_MA0105.4 2.249329534316322 - +chr1 211259194 211259206 NFKB1_MA0105.4 7.630159462507076 + +chr1 211259194 211259206 NFKB1_MA0105.4 7.265916032917212 - +chr1 211527152 211527164 NFKB1_MA0105.4 9.773162174580939 + +chr1 211527152 211527164 NFKB1_MA0105.4 9.749859488359572 - +chr1 211527153 211527165 NFKB1_MA0105.4 1.448322184189342 + +chr1 211830224 211830236 NFKB1_MA0105.4 2.068948262117055 + +chr1 211830224 211830236 NFKB1_MA0105.4 2.320310265845486 - +chr1 211939465 211939477 NFKB1_MA0105.4 3.930905035145662 + +chr1 211939465 211939477 NFKB1_MA0105.4 2.667952340018624 - diff --git a/demo/known_tfbs_chr1_hg38/NFKB2_MA0778.1.bed b/demo/known_tfbs_chr1_hg38/NFKB2_MA0778.1.bed new file mode 100644 index 0000000..658b8b7 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/NFKB2_MA0778.1.bed @@ -0,0 +1,697 @@ +chr1 779129 779141 NFKB2_MA0778.1 5.394633035704261 + +chr1 779130 779142 NFKB2_MA0778.1 5.394633035704261 - +chr1 1407312 1407324 NFKB2_MA0778.1 6.754421046568940 + +chr1 1407312 1407324 NFKB2_MA0778.1 6.634279180521438 - +chr1 1505518 1505530 NFKB2_MA0778.1 6.229726205665123 + +chr1 1505518 1505530 NFKB2_MA0778.1 6.177231471601545 - +chr1 1505551 1505563 NFKB2_MA0778.1 6.190958133999086 + +chr1 1505551 1505563 NFKB2_MA0778.1 6.211918621005034 - +chr1 1919445 1919457 NFKB2_MA0778.1 8.698683383519391 + +chr1 1919445 1919457 NFKB2_MA0778.1 8.816884086767883 - +chr1 2050285 2050297 NFKB2_MA0778.1 6.013783014348740 + +chr1 2050285 2050297 NFKB2_MA0778.1 5.900222523037907 - +chr1 2194971 2194983 NFKB2_MA0778.1 7.985676896954596 + +chr1 2194971 2194983 NFKB2_MA0778.1 8.375978208864455 - +chr1 2227511 2227523 NFKB2_MA0778.1 6.475349580063746 + +chr1 2227511 2227523 NFKB2_MA0778.1 6.172516415817308 - +chr1 2548630 2548642 NFKB2_MA0778.1 6.862404848834929 + +chr1 2548630 2548642 NFKB2_MA0778.1 6.251889076612341 - +chr1 2556285 2556297 NFKB2_MA0778.1 6.425762324392075 + +chr1 2556285 2556297 NFKB2_MA0778.1 6.470802944161854 - +chr1 2556286 2556298 NFKB2_MA0778.1 9.678969038944215 + +chr1 2556286 2556298 NFKB2_MA0778.1 9.341223914626720 - +chr1 2577660 2577672 NFKB2_MA0778.1 8.836591359226798 + +chr1 2577660 2577672 NFKB2_MA0778.1 9.126433196381782 - +chr1 2585697 2585709 NFKB2_MA0778.1 6.273344749036631 + +chr1 2585697 2585709 NFKB2_MA0778.1 5.692726881640740 - +chr1 2585698 2585710 NFKB2_MA0778.1 9.678969038944215 + +chr1 2585698 2585710 NFKB2_MA0778.1 9.341223914626720 - +chr1 2586262 2586274 NFKB2_MA0778.1 7.583321301537727 + +chr1 2586262 2586274 NFKB2_MA0778.1 7.835571586754869 - +chr1 2642643 2642655 NFKB2_MA0778.1 5.578853592999995 + +chr1 3491490 3491502 NFKB2_MA0778.1 6.861279104371177 + +chr1 3491490 3491502 NFKB2_MA0778.1 6.474816929012417 - +chr1 3677217 3677229 NFKB2_MA0778.1 7.904334548126607 + +chr1 3677217 3677229 NFKB2_MA0778.1 7.745903387249295 - +chr1 5992054 5992066 NFKB2_MA0778.1 7.095595889025256 + +chr1 5992054 5992066 NFKB2_MA0778.1 7.057942883558626 - +chr1 5992797 5992809 NFKB2_MA0778.1 5.939319038245888 + +chr1 5992797 5992809 NFKB2_MA0778.1 5.770697764141068 - +chr1 6026897 6026909 NFKB2_MA0778.1 6.312930489791694 + +chr1 6206071 6206083 NFKB2_MA0778.1 6.006491269464329 - +chr1 6785034 6785046 NFKB2_MA0778.1 5.477805143496786 + +chr1 6785034 6785046 NFKB2_MA0778.1 6.115689143125292 - +chr1 6785062 6785074 NFKB2_MA0778.1 6.621490143720314 + +chr1 8817316 8817328 NFKB2_MA0778.1 6.021152236280691 + +chr1 8817316 8817328 NFKB2_MA0778.1 6.245506819490651 - +chr1 8817317 8817329 NFKB2_MA0778.1 5.817658078474517 - +chr1 9413736 9413748 NFKB2_MA0778.1 5.445513398779272 - +chr1 9687426 9687438 NFKB2_MA0778.1 8.998029977863851 + +chr1 9687426 9687438 NFKB2_MA0778.1 8.351882400040372 - +chr1 9687427 9687439 NFKB2_MA0778.1 11.145257829020116 + +chr1 9687427 9687439 NFKB2_MA0778.1 11.591663806274388 - +chr1 9943281 9943293 NFKB2_MA0778.1 8.238288354918099 + +chr1 9943282 9943294 NFKB2_MA0778.1 7.717840797113148 + +chr1 9943282 9943294 NFKB2_MA0778.1 7.230543239350686 - +chr1 10033146 10033158 NFKB2_MA0778.1 6.196875603092564 + +chr1 10033146 10033158 NFKB2_MA0778.1 7.124662893404841 - +chr1 10210273 10210285 NFKB2_MA0778.1 5.826446317880115 + +chr1 10210273 10210285 NFKB2_MA0778.1 5.515085388799079 - +chr1 10399055 10399067 NFKB2_MA0778.1 7.442976431517100 + +chr1 10399055 10399067 NFKB2_MA0778.1 7.046470112318107 - +chr1 10475013 10475025 NFKB2_MA0778.1 6.663799876698359 + +chr1 10475013 10475025 NFKB2_MA0778.1 6.201225450839861 - +chr1 10965541 10965553 NFKB2_MA0778.1 6.646967685703586 + +chr1 10965541 10965553 NFKB2_MA0778.1 5.894852409036231 - +chr1 10965677 10965689 NFKB2_MA0778.1 7.938511976006817 + +chr1 10965677 10965689 NFKB2_MA0778.1 7.476299990023233 - +chr1 10985447 10985459 NFKB2_MA0778.1 6.110289572167572 + +chr1 10985447 10985459 NFKB2_MA0778.1 7.004004353279696 - +chr1 11479218 11479230 NFKB2_MA0778.1 8.563147852105608 + +chr1 11479218 11479230 NFKB2_MA0778.1 9.526551463588770 - +chr1 12078950 12078962 NFKB2_MA0778.1 6.723198507478058 + +chr1 12078950 12078962 NFKB2_MA0778.1 6.419465185316219 - +chr1 12079622 12079634 NFKB2_MA0778.1 10.070819227934820 + +chr1 12079622 12079634 NFKB2_MA0778.1 10.319398128342343 - +chr1 14600029 14600041 NFKB2_MA0778.1 9.673327623356389 + +chr1 14600029 14600041 NFKB2_MA0778.1 9.390443248997020 - +chr1 15603378 15603390 NFKB2_MA0778.1 6.107481088309059 + +chr1 15603378 15603390 NFKB2_MA0778.1 6.708745308073867 - +chr1 15966149 15966161 NFKB2_MA0778.1 8.143061381176418 + +chr1 15966149 15966161 NFKB2_MA0778.1 8.137414019115553 - +chr1 15966447 15966459 NFKB2_MA0778.1 5.480897255829929 + +chr1 15975945 15975957 NFKB2_MA0778.1 9.200765957621918 + 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NFKB2_MA0778.1 5.498704345143797 + +chr1 55214771 55214783 NFKB2_MA0778.1 8.839266852125796 + +chr1 55214771 55214783 NFKB2_MA0778.1 8.779923611739822 - +chr1 58392477 58392489 NFKB2_MA0778.1 5.588874395032916 + +chr1 58392477 58392489 NFKB2_MA0778.1 5.774188187598419 - +chr1 58392478 58392490 NFKB2_MA0778.1 5.524299665285320 + +chr1 59007830 59007842 NFKB2_MA0778.1 6.059739030683777 + +chr1 59007830 59007842 NFKB2_MA0778.1 6.349580867838765 - +chr1 59008055 59008067 NFKB2_MA0778.1 6.973317075086441 + +chr1 59008055 59008067 NFKB2_MA0778.1 7.270092934452666 - +chr1 59046703 59046715 NFKB2_MA0778.1 7.587371273844099 + +chr1 59046703 59046715 NFKB2_MA0778.1 7.260095077160212 - +chr1 59432546 59432558 NFKB2_MA0778.1 7.990643805820973 + +chr1 59432546 59432558 NFKB2_MA0778.1 7.359337956594439 - +chr1 59433156 59433168 NFKB2_MA0778.1 6.127449245682069 + +chr1 59433156 59433168 NFKB2_MA0778.1 6.165102251148698 - +chr1 60978902 60978914 NFKB2_MA0778.1 7.003450903360116 + +chr1 60978902 60978914 NFKB2_MA0778.1 6.913521809767638 - +chr1 62122642 62122654 NFKB2_MA0778.1 7.004004353279696 + +chr1 62122642 62122654 NFKB2_MA0778.1 6.110289572167574 - +chr1 63523143 63523155 NFKB2_MA0778.1 5.458394110593633 - +chr1 64470068 64470080 NFKB2_MA0778.1 5.724891835750723 + +chr1 64470069 64470081 NFKB2_MA0778.1 9.933323691121062 + +chr1 64470069 64470081 NFKB2_MA0778.1 9.791662733147511 - +chr1 65419955 65419967 NFKB2_MA0778.1 5.578115675983104 - +chr1 65895321 65895333 NFKB2_MA0778.1 7.284088490565885 + +chr1 65895321 65895333 NFKB2_MA0778.1 7.425749448539438 - +chr1 65895367 65895379 NFKB2_MA0778.1 6.646967685703586 + +chr1 65895367 65895379 NFKB2_MA0778.1 5.894852409036231 - +chr1 66374891 66374903 NFKB2_MA0778.1 8.080181393341396 + +chr1 66374891 66374903 NFKB2_MA0778.1 7.411540397513090 - +chr1 66726202 66726214 NFKB2_MA0778.1 5.614335576513991 + +chr1 67053963 67053975 NFKB2_MA0778.1 6.079949222728782 + +chr1 67686037 67686049 NFKB2_MA0778.1 5.990014579119084 - +chr1 68057803 68057815 NFKB2_MA0778.1 7.690164964583415 + +chr1 68057803 68057815 NFKB2_MA0778.1 6.819910438196353 - +chr1 68496300 68496312 NFKB2_MA0778.1 6.176808750367463 + +chr1 68496300 68496312 NFKB2_MA0778.1 6.556278234970096 - +chr1 71081071 71081083 NFKB2_MA0778.1 7.120962471334525 + +chr1 71081071 71081083 NFKB2_MA0778.1 6.674556494080252 - +chr1 72433163 72433175 NFKB2_MA0778.1 9.296122496043413 + +chr1 72433163 72433175 NFKB2_MA0778.1 9.423814284567033 - +chr1 74652881 74652893 NFKB2_MA0778.1 5.992336607856897 + +chr1 74652881 74652893 NFKB2_MA0778.1 6.210777610821672 - +chr1 75726993 75727005 NFKB2_MA0778.1 5.894852409036229 + +chr1 75726993 75727005 NFKB2_MA0778.1 6.646967685703586 - +chr1 76191081 76191093 NFKB2_MA0778.1 5.634393038370762 - +chr1 79694708 79694720 NFKB2_MA0778.1 7.456325542743913 + +chr1 79694708 79694720 NFKB2_MA0778.1 7.984243497912412 - +chr1 81802373 81802385 NFKB2_MA0778.1 6.360835673400247 + +chr1 81802373 81802385 NFKB2_MA0778.1 7.154539313775929 - 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NFKB2_MA0778.1 7.218826612962675 + +chr1 91572194 91572206 NFKB2_MA0778.1 7.270619930872534 - +chr1 91804250 91804262 NFKB2_MA0778.1 10.223612654291891 + +chr1 91804250 91804262 NFKB2_MA0778.1 9.909595195673774 - +chr1 91885700 91885712 NFKB2_MA0778.1 5.469263366311125 - +chr1 92299251 92299263 NFKB2_MA0778.1 6.891586875413084 + +chr1 92299251 92299263 NFKB2_MA0778.1 7.484323330343296 - +chr1 92960982 92960994 NFKB2_MA0778.1 8.823728911227899 + +chr1 92960982 92960994 NFKB2_MA0778.1 9.442491389126738 - +chr1 92962097 92962109 NFKB2_MA0778.1 11.075464921970793 + +chr1 92962097 92962109 NFKB2_MA0778.1 10.560710396578877 - +chr1 92962629 92962641 NFKB2_MA0778.1 10.729292974789473 + +chr1 92962629 92962641 NFKB2_MA0778.1 11.360598824016005 - +chr1 93346345 93346357 NFKB2_MA0778.1 7.678717007414613 + +chr1 93346345 93346357 NFKB2_MA0778.1 7.634129979736745 - +chr1 93693269 93693281 NFKB2_MA0778.1 6.358221738581340 + +chr1 93693269 93693281 NFKB2_MA0778.1 5.674639801228956 - +chr1 94542231 94542243 NFKB2_MA0778.1 5.837448037143643 - +chr1 96417255 96417267 NFKB2_MA0778.1 6.916363661092510 + +chr1 97848287 97848299 NFKB2_MA0778.1 6.467326239743682 + +chr1 97848287 97848299 NFKB2_MA0778.1 7.219441516411039 - +chr1 97920806 97920818 NFKB2_MA0778.1 6.136505478594710 + +chr1 97920806 97920818 NFKB2_MA0778.1 6.275365222704317 - +chr1 99750113 99750125 NFKB2_MA0778.1 8.076454739807094 + +chr1 99750113 99750125 NFKB2_MA0778.1 8.010701267677746 - +chr1 99750163 99750175 NFKB2_MA0778.1 6.001126306139179 - +chr1 99784990 99785002 NFKB2_MA0778.1 8.369747182606000 + +chr1 99784990 99785002 NFKB2_MA0778.1 8.573346456973825 - +chr1 100038625 100038637 NFKB2_MA0778.1 8.733014876440564 + +chr1 100038625 100038637 NFKB2_MA0778.1 8.201114060085938 - +chr1 100266364 100266376 NFKB2_MA0778.1 6.375816806368408 + +chr1 100266364 100266376 NFKB2_MA0778.1 6.693759110186114 - +chr1 100352360 100352372 NFKB2_MA0778.1 7.708896826669071 + +chr1 100352360 100352372 NFKB2_MA0778.1 7.456646541451929 - 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107057766 NFKB2_MA0778.1 7.243608687287729 + +chr1 107057754 107057766 NFKB2_MA0778.1 6.208076186384083 - +chr1 107141065 107141077 NFKB2_MA0778.1 7.404597886458635 + +chr1 107141065 107141077 NFKB2_MA0778.1 5.647662524077376 - +chr1 108746631 108746643 NFKB2_MA0778.1 9.085393268021843 + +chr1 108746631 108746643 NFKB2_MA0778.1 8.608353201625343 - +chr1 108746632 108746644 NFKB2_MA0778.1 6.842178383116470 + +chr1 108746632 108746644 NFKB2_MA0778.1 7.563904668782300 - +chr1 109532594 109532606 NFKB2_MA0778.1 6.632246602269191 + +chr1 110034554 110034566 NFKB2_MA0778.1 5.499595711079521 + +chr1 110338518 110338530 NFKB2_MA0778.1 9.154054271385567 + +chr1 110338518 110338530 NFKB2_MA0778.1 8.138094472310041 - +chr1 110634930 110634942 NFKB2_MA0778.1 8.369747182606000 + +chr1 110634930 110634942 NFKB2_MA0778.1 8.573346456973825 - +chr1 110963851 110963863 NFKB2_MA0778.1 6.457921248987481 + +chr1 110963851 110963863 NFKB2_MA0778.1 7.014392483628892 - +chr1 111406424 111406436 NFKB2_MA0778.1 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119139842 NFKB2_MA0778.1 6.109512312934572 - +chr1 119266553 119266565 NFKB2_MA0778.1 5.702770818592295 + +chr1 119266582 119266594 NFKB2_MA0778.1 10.884676769897823 + +chr1 119266582 119266594 NFKB2_MA0778.1 11.675723880736420 - +chr1 119348105 119348117 NFKB2_MA0778.1 11.964160998477588 + +chr1 119348105 119348117 NFKB2_MA0778.1 11.570311208815683 - +chr1 120723812 120723824 NFKB2_MA0778.1 6.385006457197557 + +chr1 120914114 120914126 NFKB2_MA0778.1 9.218205762847063 + +chr1 120914114 120914126 NFKB2_MA0778.1 9.218267216375850 - +chr1 121184426 121184438 NFKB2_MA0778.1 7.208498816650159 + +chr1 121184426 121184438 NFKB2_MA0778.1 6.573396287355092 - +chr1 145214963 145214975 NFKB2_MA0778.1 9.575303883951957 + +chr1 145214963 145214975 NFKB2_MA0778.1 9.433642925978406 - +chr1 145425739 145425751 NFKB2_MA0778.1 6.022154480701775 - +chr1 145859861 145859873 NFKB2_MA0778.1 6.614030705329101 - +chr1 145979924 145979936 NFKB2_MA0778.1 6.714859765853006 + +chr1 145979924 145979936 NFKB2_MA0778.1 7.401875483600303 - +chr1 146038320 146038332 NFKB2_MA0778.1 5.925126002657031 + +chr1 146038320 146038332 NFKB2_MA0778.1 5.653303015611770 - +chr1 146938510 146938522 NFKB2_MA0778.1 7.716374624170547 + +chr1 146938510 146938522 NFKB2_MA0778.1 8.206080968952318 - +chr1 147172258 147172270 NFKB2_MA0778.1 8.578879018891058 + +chr1 147172258 147172270 NFKB2_MA0778.1 7.485316602670882 - +chr1 147173118 147173130 NFKB2_MA0778.1 7.938511976006817 + +chr1 147173118 147173130 NFKB2_MA0778.1 7.476299990023233 - +chr1 148152122 148152134 NFKB2_MA0778.1 8.206080968952316 + +chr1 148152122 148152134 NFKB2_MA0778.1 7.716374624170549 - +chr1 148458926 148458938 NFKB2_MA0778.1 9.575303883951957 + +chr1 148458926 148458938 NFKB2_MA0778.1 9.433642925978406 - +chr1 150234677 150234689 NFKB2_MA0778.1 5.801086086713574 + +chr1 150234697 150234709 NFKB2_MA0778.1 7.991660815942145 + +chr1 150234697 150234709 NFKB2_MA0778.1 7.960417582420186 - +chr1 150363872 150363884 NFKB2_MA0778.1 11.880636190155439 + +chr1 150363872 150363884 NFKB2_MA0778.1 11.610258098355358 - +chr1 150579564 150579576 NFKB2_MA0778.1 8.128322411913416 + +chr1 150579564 150579576 NFKB2_MA0778.1 7.788580916703149 - +chr1 150876749 150876761 NFKB2_MA0778.1 5.939319038245888 + +chr1 150876749 150876761 NFKB2_MA0778.1 5.770697764141068 - +chr1 151048381 151048393 NFKB2_MA0778.1 5.756664301618176 + +chr1 151281950 151281962 NFKB2_MA0778.1 6.331348318487455 + +chr1 151281950 151281962 NFKB2_MA0778.1 5.441290971600599 - +chr1 151282450 151282462 NFKB2_MA0778.1 5.659327657226888 + +chr1 151282601 151282613 NFKB2_MA0778.1 8.400652318868616 + +chr1 151282601 151282613 NFKB2_MA0778.1 7.744890748712435 - +chr1 151327274 151327286 NFKB2_MA0778.1 8.244134206188031 + +chr1 151327274 151327286 NFKB2_MA0778.1 8.244195659716818 - +chr1 151540001 151540013 NFKB2_MA0778.1 7.888603383991688 + +chr1 151540001 151540013 NFKB2_MA0778.1 8.455562129804646 - +chr1 151763363 151763375 NFKB2_MA0778.1 5.980092047461601 + 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155208825 NFKB2_MA0778.1 8.880610764264377 + +chr1 155208813 155208825 NFKB2_MA0778.1 8.538212739517029 - +chr1 155208814 155208826 NFKB2_MA0778.1 6.643645682128581 + +chr1 155208814 155208826 NFKB2_MA0778.1 6.252919586425348 - +chr1 155209133 155209145 NFKB2_MA0778.1 9.528592197715605 + +chr1 155209133 155209145 NFKB2_MA0778.1 8.864302862724831 - +chr1 155324321 155324333 NFKB2_MA0778.1 6.248222990875459 + +chr1 156054240 156054252 NFKB2_MA0778.1 7.363111879028412 + +chr1 156054240 156054252 NFKB2_MA0778.1 7.533153403131195 - +chr1 156106411 156106423 NFKB2_MA0778.1 5.497289160183204 + +chr1 156106411 156106423 NFKB2_MA0778.1 5.984087903239266 - +chr1 156114628 156114640 NFKB2_MA0778.1 7.672773626977909 + +chr1 156114628 156114640 NFKB2_MA0778.1 6.920295910435638 - +chr1 156226043 156226055 NFKB2_MA0778.1 5.894852409036229 + +chr1 156226043 156226055 NFKB2_MA0778.1 6.646967685703586 - +chr1 156282382 156282394 NFKB2_MA0778.1 5.404539771542475 + +chr1 156488860 156488872 NFKB2_MA0778.1 6.429752571449052 + +chr1 156488860 156488872 NFKB2_MA0778.1 7.992532241793182 - +chr1 156740790 156740802 NFKB2_MA0778.1 9.386161279100403 + +chr1 156740790 156740802 NFKB2_MA0778.1 9.333775501510043 - +chr1 156766906 156766918 NFKB2_MA0778.1 6.755433717349935 + +chr1 156766906 156766918 NFKB2_MA0778.1 7.487976292189172 - +chr1 156767706 156767718 NFKB2_MA0778.1 5.526415584851898 + +chr1 158286814 158286826 NFKB2_MA0778.1 5.724891835750723 + +chr1 158286815 158286827 NFKB2_MA0778.1 9.155247628599950 + +chr1 158286815 158286827 NFKB2_MA0778.1 9.639245157792066 - +chr1 158371351 158371363 NFKB2_MA0778.1 7.202906396388430 + +chr1 158371351 158371363 NFKB2_MA0778.1 6.777050963320759 - +chr1 158371433 158371445 NFKB2_MA0778.1 5.994950869050448 + +chr1 158371434 158371446 NFKB2_MA0778.1 6.544173994964270 + +chr1 158371434 158371446 NFKB2_MA0778.1 6.335037048000090 - +chr1 159077407 159077419 NFKB2_MA0778.1 9.780906115765617 + +chr1 159077407 159077419 NFKB2_MA0778.1 9.013586670626399 - 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161612460 NFKB2_MA0778.1 6.454487149058822 - +chr1 161766685 161766697 NFKB2_MA0778.1 5.496108569589048 - +chr1 163922798 163922810 NFKB2_MA0778.1 6.553468669462052 - +chr1 166490409 166490421 NFKB2_MA0778.1 7.470133815355294 + +chr1 166490409 166490421 NFKB2_MA0778.1 7.784151273973415 - +chr1 167222230 167222242 NFKB2_MA0778.1 6.534742890245042 + +chr1 167222231 167222243 NFKB2_MA0778.1 11.891161043867760 + +chr1 167222231 167222243 NFKB2_MA0778.1 11.241713437473932 - +chr1 167455098 167455110 NFKB2_MA0778.1 5.964148977950142 + +chr1 167455098 167455110 NFKB2_MA0778.1 6.447721723348885 - +chr1 167540065 167540077 NFKB2_MA0778.1 6.251889076612339 + +chr1 167540065 167540077 NFKB2_MA0778.1 6.862404848834929 - +chr1 167628313 167628325 NFKB2_MA0778.1 7.760422778526124 + +chr1 167628313 167628325 NFKB2_MA0778.1 7.902083736499677 - +chr1 167676978 167676990 NFKB2_MA0778.1 5.727769143164197 + +chr1 168226383 168226395 NFKB2_MA0778.1 6.059807486168404 + +chr1 168466679 168466691 NFKB2_MA0778.1 7.491064302349378 + +chr1 168466679 168466691 NFKB2_MA0778.1 8.795854241461011 - +chr1 168554237 168554249 NFKB2_MA0778.1 7.503540311418894 + +chr1 168554237 168554249 NFKB2_MA0778.1 6.191473795116498 - +chr1 169594577 169594589 NFKB2_MA0778.1 6.445828883886824 + +chr1 169594577 169594589 NFKB2_MA0778.1 6.725712011546389 - +chr1 169594578 169594590 NFKB2_MA0778.1 5.660288635540915 - +chr1 170532135 170532147 NFKB2_MA0778.1 6.349373275433007 + +chr1 170532135 170532147 NFKB2_MA0778.1 6.426214773953014 - +chr1 170532580 170532592 NFKB2_MA0778.1 5.445011850201262 - +chr1 171485874 171485886 NFKB2_MA0778.1 5.547544746459871 - +chr1 171486069 171486081 NFKB2_MA0778.1 5.745240075938669 - +chr1 171741920 171741932 NFKB2_MA0778.1 8.965891844797053 + +chr1 171741920 171741932 NFKB2_MA0778.1 9.068983408474281 - +chr1 172181462 172181474 NFKB2_MA0778.1 5.707972981696988 + +chr1 172181462 172181474 NFKB2_MA0778.1 6.698179454712974 - +chr1 172343767 172343779 NFKB2_MA0778.1 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183471610 NFKB2_MA0778.1 6.371802821517845 + +chr1 183471598 183471610 NFKB2_MA0778.1 6.258242330207011 - +chr1 183472141 183472153 NFKB2_MA0778.1 6.656011969413823 + +chr1 183472141 183472153 NFKB2_MA0778.1 6.223199073550536 - +chr1 183590826 183590838 NFKB2_MA0778.1 6.646967685703586 + +chr1 183590826 183590838 NFKB2_MA0778.1 5.894852409036231 - +chr1 183911567 183911579 NFKB2_MA0778.1 6.878710655625879 + +chr1 183911568 183911580 NFKB2_MA0778.1 5.435021613073810 - +chr1 184036785 184036797 NFKB2_MA0778.1 6.737964880715122 + +chr1 184036785 184036797 NFKB2_MA0778.1 7.058115938716266 - +chr1 184036786 184036798 NFKB2_MA0778.1 5.593726758996731 + +chr1 184036786 184036798 NFKB2_MA0778.1 6.105824754851567 - +chr1 184052186 184052198 NFKB2_MA0778.1 9.588700906214582 + +chr1 184052186 184052198 NFKB2_MA0778.1 8.998735678178591 - +chr1 184386591 184386603 NFKB2_MA0778.1 6.634279180521437 + +chr1 184386591 184386603 NFKB2_MA0778.1 6.754421046568940 - +chr1 184387240 184387252 NFKB2_MA0778.1 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193438288 NFKB2_MA0778.1 9.911846007300705 - +chr1 194289747 194289759 NFKB2_MA0778.1 5.466636341031764 + +chr1 194289747 194289759 NFKB2_MA0778.1 5.756478178186752 - +chr1 196723754 196723766 NFKB2_MA0778.1 9.650764389975084 + +chr1 196723754 196723766 NFKB2_MA0778.1 9.936681381930486 - +chr1 196723767 196723779 NFKB2_MA0778.1 6.304954016443360 + +chr1 196723767 196723779 NFKB2_MA0778.1 6.941142884771422 - +chr1 198156440 198156452 NFKB2_MA0778.1 5.750994806838194 - +chr1 199173049 199173061 NFKB2_MA0778.1 5.489254751576799 - +chr1 199498725 199498737 NFKB2_MA0778.1 6.646967685703586 + +chr1 199498725 199498737 NFKB2_MA0778.1 5.894852409036231 - +chr1 199977577 199977589 NFKB2_MA0778.1 6.539116874397113 + +chr1 199977577 199977589 NFKB2_MA0778.1 6.919011142793122 - +chr1 200627773 200627785 NFKB2_MA0778.1 7.850871283819631 + +chr1 200627773 200627785 NFKB2_MA0778.1 6.571413529422603 - +chr1 200628419 200628431 NFKB2_MA0778.1 7.411540397513090 + +chr1 200628419 200628431 NFKB2_MA0778.1 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109283226 NFYB_MA0502.1 9.207291827075034 - +chr1 109283575 109283589 NFYB_MA0502.1 7.368540340564444 - +chr1 109426495 109426509 NFYB_MA0502.1 7.884296348364005 - +chr1 109532785 109532799 NFYB_MA0502.1 9.249824103334786 + +chr1 110338921 110338935 NFYB_MA0502.1 7.937730349536255 + +chr1 110339263 110339277 NFYB_MA0502.1 10.356756304165042 + +chr1 110339396 110339410 NFYB_MA0502.1 11.426995169219875 + +chr1 111739449 111739463 NFYB_MA0502.1 8.515464306887749 + +chr1 111739479 111739493 NFYB_MA0502.1 7.897683068440707 + +chr1 112396156 112396170 NFYB_MA0502.1 7.135167697986659 - +chr1 113073149 113073163 NFYB_MA0502.1 9.448251033688580 - +chr1 113191861 113191875 NFYB_MA0502.1 8.232168658472778 - +chr1 113783623 113783637 NFYB_MA0502.1 10.677618831391888 + +chr1 114670135 114670149 NFYB_MA0502.1 9.383271847162561 - +chr1 117060146 117060160 NFYB_MA0502.1 9.589981127108516 - +chr1 117060177 117060191 NFYB_MA0502.1 8.797644256149624 - +chr1 117122154 117122168 NFYB_MA0502.1 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147243217 147243231 NFYB_MA0502.1 7.664357567228146 - +chr1 147928372 147928386 NFYB_MA0502.1 11.814121883958700 - +chr1 149812443 149812457 NFYB_MA0502.1 9.356752929956356 - +chr1 149886752 149886766 NFYB_MA0502.1 8.727305185952392 - +chr1 149886817 149886831 NFYB_MA0502.1 10.695813897064507 - +chr1 149886841 149886855 NFYB_MA0502.1 7.767322110465682 + +chr1 149888026 149888040 NFYB_MA0502.1 8.921099934430877 - +chr1 150236263 150236277 NFYB_MA0502.1 7.042290532466368 - +chr1 150364048 150364062 NFYB_MA0502.1 12.483225621604507 - +chr1 150487373 150487387 NFYB_MA0502.1 7.077938305585861 + +chr1 150515609 150515623 NFYB_MA0502.1 10.896486691582052 + +chr1 150562277 150562291 NFYB_MA0502.1 6.987687190164016 + +chr1 150579276 150579290 NFYB_MA0502.1 7.428399896236738 + +chr1 150579351 150579365 NFYB_MA0502.1 8.993759071796218 + +chr1 150629195 150629209 NFYB_MA0502.1 11.732828431047871 + +chr1 150629327 150629341 NFYB_MA0502.1 6.895929909720832 + +chr1 150629762 150629776 NFYB_MA0502.1 6.787960146973568 + +chr1 150697200 150697214 NFYB_MA0502.1 11.197002464014240 + +chr1 150697230 150697244 NFYB_MA0502.1 8.967495590640571 + +chr1 150697401 150697415 NFYB_MA0502.1 11.047307158484857 + +chr1 150876806 150876820 NFYB_MA0502.1 10.281994258100941 + +chr1 151198474 151198488 NFYB_MA0502.1 8.087420630598768 - +chr1 151254697 151254711 NFYB_MA0502.1 8.745335131197979 - +chr1 151282060 151282074 NFYB_MA0502.1 8.107069386858448 + +chr1 151282101 151282115 NFYB_MA0502.1 7.439438386427258 + +chr1 151282208 151282222 NFYB_MA0502.1 7.180808376115538 + +chr1 151347340 151347354 NFYB_MA0502.1 8.643329112165762 - +chr1 151347422 151347436 NFYB_MA0502.1 11.916233502809169 - +chr1 151399704 151399718 NFYB_MA0502.1 7.029005576168051 + +chr1 151540175 151540189 NFYB_MA0502.1 8.372467429379899 - +chr1 151790546 151790560 NFYB_MA0502.1 8.444457842364066 + +chr1 151790573 151790587 NFYB_MA0502.1 8.460094334200086 + +chr1 151790690 151790704 NFYB_MA0502.1 8.642674835593191 + +chr1 153671027 153671041 NFYB_MA0502.1 7.792479053029166 - +chr1 153671060 153671074 NFYB_MA0502.1 7.549888031797074 - +chr1 153671088 153671102 NFYB_MA0502.1 6.839856395990218 + +chr1 153671121 153671135 NFYB_MA0502.1 9.870819212833201 + +chr1 153791139 153791153 NFYB_MA0502.1 6.796475413595404 - +chr1 153922974 153922988 NFYB_MA0502.1 8.221966221344147 - +chr1 153923141 153923155 NFYB_MA0502.1 6.882584859207956 - +chr1 153967693 153967707 NFYB_MA0502.1 7.818152562236123 - +chr1 153967770 153967784 NFYB_MA0502.1 7.794044187467089 - +chr1 154870346 154870360 NFYB_MA0502.1 9.419677508966252 - +chr1 154974443 154974457 NFYB_MA0502.1 7.714510713948738 + +chr1 154974482 154974496 NFYB_MA0502.1 7.607572063161927 + +chr1 154974572 154974586 NFYB_MA0502.1 9.679132290395046 + +chr1 154974620 154974634 NFYB_MA0502.1 9.735519269807643 + +chr1 154983243 154983257 NFYB_MA0502.1 8.672831243644341 + +chr1 155002206 155002220 NFYB_MA0502.1 9.375633387223832 + +chr1 155017327 155017341 NFYB_MA0502.1 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159076860 NFYB_MA0502.1 8.185048068616787 - +chr1 159780809 159780823 NFYB_MA0502.1 10.104838181154642 + +chr1 159838811 159838825 NFYB_MA0502.1 7.024454070093424 + +chr1 159839415 159839429 NFYB_MA0502.1 12.243847281799139 - +chr1 160790140 160790154 NFYB_MA0502.1 8.240873917042853 - +chr1 160790291 160790305 NFYB_MA0502.1 7.775038753988874 - +chr1 161021200 161021214 NFYB_MA0502.1 11.494863577905637 - +chr1 161021231 161021245 NFYB_MA0502.1 8.199499673089045 - +chr1 161021408 161021422 NFYB_MA0502.1 12.717998423940525 - +chr1 161159847 161159861 NFYB_MA0502.1 9.264947217109349 + +chr1 161185585 161185599 NFYB_MA0502.1 7.088011627212892 + diff --git a/demo/known_tfbs_chr1_hg38/NHLH1_MA0048.2.bed b/demo/known_tfbs_chr1_hg38/NHLH1_MA0048.2.bed new file mode 100644 index 0000000..90a0ee9 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/NHLH1_MA0048.2.bed @@ -0,0 +1,929 @@ +chr1 827308 827317 NHLH1_MA0048.2 7.325184709875721 + +chr1 827308 827317 NHLH1_MA0048.2 7.989691400605524 - +chr1 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NHLH1_MA0048.2 7.492238782883877 + +chr1 8097628 8097637 NHLH1_MA0048.2 9.170316729890668 - +chr1 8427575 8427584 NHLH1_MA0048.2 7.347837457131346 + +chr1 8764180 8764189 NHLH1_MA0048.2 8.451543897677201 + +chr1 8764180 8764189 NHLH1_MA0048.2 8.836461115674263 - +chr1 9182415 9182424 NHLH1_MA0048.2 8.683512848178715 + +chr1 9182415 9182424 NHLH1_MA0048.2 8.849846453996770 - +chr1 9413276 9413285 NHLH1_MA0048.2 8.427906135585920 + +chr1 9413276 9413285 NHLH1_MA0048.2 8.427906135585920 - +chr1 9687503 9687512 NHLH1_MA0048.2 8.223039088741125 + +chr1 10398767 10398776 NHLH1_MA0048.2 7.279278395779828 + +chr1 10398767 10398776 NHLH1_MA0048.2 8.025121160434120 - +chr1 10398804 10398813 NHLH1_MA0048.2 7.353849875030356 - +chr1 10494813 10494822 NHLH1_MA0048.2 8.223039088741125 - +chr1 10940112 10940121 NHLH1_MA0048.2 7.664362238611352 + +chr1 11059822 11059831 NHLH1_MA0048.2 10.411511592723436 + +chr1 11059822 11059831 NHLH1_MA0048.2 10.411511592723436 - +chr1 11262465 11262474 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32500620 NHLH1_MA0048.2 8.451543897677201 - +chr1 33099499 33099508 NHLH1_MA0048.2 8.159177412371488 - +chr1 33181020 33181029 NHLH1_MA0048.2 7.875280027791847 + +chr1 33181944 33181953 NHLH1_MA0048.2 7.989691400605524 + +chr1 33181944 33181953 NHLH1_MA0048.2 7.325184709875721 - +chr1 33472715 33472724 NHLH1_MA0048.2 7.325184709875721 + +chr1 33472715 33472724 NHLH1_MA0048.2 7.989691400605524 - +chr1 35268567 35268576 NHLH1_MA0048.2 10.411511592723436 + +chr1 35268567 35268576 NHLH1_MA0048.2 10.411511592723436 - +chr1 35770127 35770136 NHLH1_MA0048.2 11.422650910242616 + +chr1 35770127 35770136 NHLH1_MA0048.2 10.785719007839605 - +chr1 36150015 36150024 NHLH1_MA0048.2 7.733329923983435 + +chr1 36224477 36224486 NHLH1_MA0048.2 8.825751312793370 + +chr1 36224477 36224486 NHLH1_MA0048.2 9.847600433193444 - +chr1 36224578 36224587 NHLH1_MA0048.2 8.928900352079527 + +chr1 36224578 36224587 NHLH1_MA0048.2 7.733291599546744 - +chr1 36306670 36306679 NHLH1_MA0048.2 8.744469241502616 - +chr1 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198176060 NHLH1_MA0048.2 7.552867464354593 + +chr1 198176051 198176060 NHLH1_MA0048.2 8.439191187321839 - +chr1 198599063 198599072 NHLH1_MA0048.2 9.170316729890668 + +chr1 198599063 198599072 NHLH1_MA0048.2 7.492238782883877 - +chr1 198621130 198621139 NHLH1_MA0048.2 8.427906135585920 + +chr1 198621130 198621139 NHLH1_MA0048.2 8.427906135585920 - +chr1 199243725 199243734 NHLH1_MA0048.2 9.314718055643201 + +chr1 199243725 199243734 NHLH1_MA0048.2 10.716789646904212 - +chr1 199942283 199942292 NHLH1_MA0048.2 8.836461115674263 + +chr1 199942283 199942292 NHLH1_MA0048.2 8.451543897677201 - +chr1 200262739 200262748 NHLH1_MA0048.2 9.170316729890668 + +chr1 200262739 200262748 NHLH1_MA0048.2 7.492238782883877 - +chr1 200866699 200866708 NHLH1_MA0048.2 8.301127516179900 + +chr1 201468710 201468719 NHLH1_MA0048.2 8.301127516179900 + +chr1 201468895 201468904 NHLH1_MA0048.2 7.330787361794101 + +chr1 201480532 201480541 NHLH1_MA0048.2 9.303107767195698 + +chr1 201480532 201480541 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212567381 NHLH1_MA0048.2 7.917761034560345 + +chr1 212567372 212567381 NHLH1_MA0048.2 7.359084184430573 - +chr1 212567385 212567394 NHLH1_MA0048.2 7.289988198660719 + +chr1 212665639 212665648 NHLH1_MA0048.2 7.394037723513486 + +chr1 212665639 212665648 NHLH1_MA0048.2 7.883171056625708 - +chr1 212857811 212857820 NHLH1_MA0048.2 9.170316729890668 + +chr1 212857811 212857820 NHLH1_MA0048.2 7.492238782883877 - +chr1 213015417 213015426 NHLH1_MA0048.2 7.664362238611352 - +chr1 214296178 214296187 NHLH1_MA0048.2 8.813398602438008 + +chr1 214296178 214296187 NHLH1_MA0048.2 8.564006781873776 - +chr1 214439569 214439578 NHLH1_MA0048.2 7.353849875030356 + +chr1 215567941 215567950 NHLH1_MA0048.2 7.464499721361419 + +chr1 215567941 215567950 NHLH1_MA0048.2 7.298166115543363 - +chr1 219465535 219465544 NHLH1_MA0048.2 10.411511592723436 + +chr1 219465535 219465544 NHLH1_MA0048.2 10.411511592723436 - +chr1 219476208 219476217 NHLH1_MA0048.2 8.427906135585920 + +chr1 219476208 219476217 NHLH1_MA0048.2 8.427906135585920 - +chr1 219476707 219476716 NHLH1_MA0048.2 7.197958000052383 + +chr1 219476707 219476716 NHLH1_MA0048.2 7.480628494436375 - +chr1 221742369 221742378 NHLH1_MA0048.2 10.411511592723436 + +chr1 221742369 221742378 NHLH1_MA0048.2 10.411511592723436 - +chr1 221778598 221778607 NHLH1_MA0048.2 7.464499721361419 + +chr1 221778598 221778607 NHLH1_MA0048.2 7.298166115543363 - +chr1 221840633 221840642 NHLH1_MA0048.2 7.989691400605524 + +chr1 221840633 221840642 NHLH1_MA0048.2 7.325184709875721 - +chr1 222583239 222583248 NHLH1_MA0048.2 7.492238782883877 + +chr1 222583239 222583248 NHLH1_MA0048.2 9.170316729890668 - +chr1 222644059 222644068 NHLH1_MA0048.2 8.223039088741125 + +chr1 222644338 222644347 NHLH1_MA0048.2 7.492238782883877 + +chr1 222644338 222644347 NHLH1_MA0048.2 9.170316729890668 - +chr1 222773271 222773280 NHLH1_MA0048.2 7.347837457131346 + +chr1 223144065 223144074 NHLH1_MA0048.2 7.716116983617551 + +chr1 223190100 223190109 NHLH1_MA0048.2 8.963239735080281 + +chr1 223190100 223190109 NHLH1_MA0048.2 9.876177993229071 - +chr1 224114296 224114305 NHLH1_MA0048.2 7.211899771221942 + +chr1 224182484 224182493 NHLH1_MA0048.2 7.903857587827476 + +chr1 224357064 224357073 NHLH1_MA0048.2 7.197996324489074 - +chr1 224434719 224434728 NHLH1_MA0048.2 8.234649377188628 + +chr1 224434719 224434728 NHLH1_MA0048.2 8.234649377188628 - +chr1 224434781 224434790 NHLH1_MA0048.2 8.928900352079527 + +chr1 224434781 224434790 NHLH1_MA0048.2 7.733291599546744 - +chr1 224503732 224503741 NHLH1_MA0048.2 8.427906135585920 + +chr1 224503732 224503741 NHLH1_MA0048.2 8.427906135585920 - +chr1 224783447 224783456 NHLH1_MA0048.2 7.927074879470764 + +chr1 224783447 224783456 NHLH1_MA0048.2 9.450330504841020 - +chr1 224929957 224929966 NHLH1_MA0048.2 8.928900352079527 + +chr1 224929957 224929966 NHLH1_MA0048.2 7.733291599546744 - +chr1 225467466 225467475 NHLH1_MA0048.2 8.301127516179900 + +chr1 225467766 225467775 NHLH1_MA0048.2 7.353849875030356 + 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b/demo/known_tfbs_chr1_hg38/NKX2_3_MA0672.1.bed new file mode 100644 index 0000000..c919841 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/NKX2_3_MA0672.1.bed @@ -0,0 +1,117 @@ +chr1 1692940 1692949 NKX2_3_MA0672.1 8.424424562626042 - +chr1 1746219 1746228 NKX2_3_MA0672.1 8.424424562626042 - +chr1 2577920 2577929 NKX2_3_MA0672.1 8.027838611161149 - +chr1 2578263 2578272 NKX2_3_MA0672.1 8.027838611161149 - +chr1 7994381 7994390 NKX2_3_MA0672.1 9.181916556154549 - +chr1 8097868 8097877 NKX2_3_MA0672.1 7.891288750732336 + +chr1 8182568 8182577 NKX2_3_MA0672.1 7.891288750732336 - +chr1 9413559 9413568 NKX2_3_MA0672.1 9.192004085834913 + +chr1 9413771 9413780 NKX2_3_MA0672.1 9.905904837317426 + +chr1 9942858 9942867 NKX2_3_MA0672.1 8.932902470719753 + +chr1 11908275 11908284 NKX2_3_MA0672.1 8.212174185920869 - +chr1 13730597 13730606 NKX2_3_MA0672.1 8.168515797552606 - +chr1 15231751 15231760 NKX2_3_MA0672.1 7.811292609492078 + +chr1 16013215 16013224 NKX2_3_MA0672.1 8.155038610548738 + 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NKX6_1_MA0674.1 7.884291318199360 + +chr1 39196412 39196419 NKX6_1_MA0674.1 8.443134592598145 + +chr1 40665839 40665846 NKX6_1_MA0674.1 7.884291318199360 - +chr1 41955733 41955740 NKX6_1_MA0674.1 7.884291318199360 - +chr1 41955786 41955793 NKX6_1_MA0674.1 7.898159335043551 + +chr1 44730660 44730667 NKX6_1_MA0674.1 7.842022151805627 + +chr1 44730660 44730667 NKX6_1_MA0674.1 7.842022151805627 - +chr1 46604514 46604521 NKX6_1_MA0674.1 8.497731773736591 + +chr1 50873696 50873703 NKX6_1_MA0674.1 8.497731773736591 + +chr1 51285477 51285484 NKX6_1_MA0674.1 7.842022151805627 + +chr1 51285477 51285484 NKX6_1_MA0674.1 7.842022151805627 - +chr1 56330384 56330391 NKX6_1_MA0674.1 7.884291318199360 - +chr1 56579692 56579699 NKX6_1_MA0674.1 7.898159335043551 + +chr1 57546825 57546832 NKX6_1_MA0674.1 7.938888499337807 + +chr1 57546922 57546929 NKX6_1_MA0674.1 8.497731773736591 + +chr1 65894960 65894967 NKX6_1_MA0674.1 7.898159335043551 + +chr1 66350236 66350243 NKX6_1_MA0674.1 7.938888499337807 - 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7.938888499337807 - +chr1 78004715 78004722 NKX6_1_MA0674.1 8.443134592598145 - +chr1 78277582 78277589 NKX6_1_MA0674.1 7.884291318199360 - +chr1 78854870 78854877 NKX6_1_MA0674.1 7.898159335043551 - +chr1 79468833 79468840 NKX6_1_MA0674.1 7.938888499337807 - +chr1 79694791 79694798 NKX6_1_MA0674.1 7.898159335043551 - +chr1 80639816 80639823 NKX6_1_MA0674.1 7.898159335043551 - +chr1 83500947 83500954 NKX6_1_MA0674.1 7.898159335043551 + +chr1 84152723 84152730 NKX6_1_MA0674.1 8.443134592598145 - +chr1 85062127 85062134 NKX6_1_MA0674.1 7.938888499337807 + +chr1 85298191 85298198 NKX6_1_MA0674.1 7.938888499337807 - +chr1 86015763 86015770 NKX6_1_MA0674.1 8.497731773736591 - +chr1 86774177 86774184 NKX6_1_MA0674.1 7.938888499337807 - +chr1 86913910 86913917 NKX6_1_MA0674.1 7.938888499337807 + +chr1 87052491 87052498 NKX6_1_MA0674.1 7.842022151805627 + +chr1 87052491 87052498 NKX6_1_MA0674.1 7.842022151805627 - +chr1 87151750 87151757 NKX6_1_MA0674.1 7.898159335043551 + +chr1 87588236 87588243 NKX6_1_MA0674.1 7.898159335043551 + +chr1 87813277 87813284 NKX6_1_MA0674.1 7.898159335043551 + +chr1 89612033 89612040 NKX6_1_MA0674.1 7.898159335043551 - +chr1 89670029 89670036 NKX6_1_MA0674.1 7.898159335043551 - +chr1 90358467 90358474 NKX6_1_MA0674.1 7.898159335043551 + +chr1 91572188 91572195 NKX6_1_MA0674.1 8.443134592598145 - +chr1 92537310 92537317 NKX6_1_MA0674.1 7.898159335043551 + +chr1 92563512 92563519 NKX6_1_MA0674.1 7.898159335043551 - +chr1 92563908 92563915 NKX6_1_MA0674.1 7.842022151805627 + +chr1 92563908 92563915 NKX6_1_MA0674.1 7.842022151805627 - +chr1 92563912 92563919 NKX6_1_MA0674.1 7.842022151805627 + +chr1 92563912 92563919 NKX6_1_MA0674.1 7.842022151805627 - +chr1 92563916 92563923 NKX6_1_MA0674.1 7.842022151805627 + +chr1 92563916 92563923 NKX6_1_MA0674.1 7.842022151805627 - +chr1 94237128 94237135 NKX6_1_MA0674.1 8.497731773736591 - +chr1 94963095 94963102 NKX6_1_MA0674.1 7.938888499337807 - +chr1 95072533 95072540 NKX6_1_MA0674.1 7.898159335043551 - +chr1 95095708 95095715 NKX6_1_MA0674.1 7.898159335043551 - +chr1 96955265 96955272 NKX6_1_MA0674.1 7.898159335043551 + +chr1 97138790 97138797 NKX6_1_MA0674.1 8.443134592598145 + +chr1 97163762 97163769 NKX6_1_MA0674.1 8.497731773736591 - +chr1 97461659 97461666 NKX6_1_MA0674.1 7.898159335043551 + +chr1 97462108 97462115 NKX6_1_MA0674.1 7.898159335043551 + +chr1 97848691 97848698 NKX6_1_MA0674.1 7.898159335043551 + +chr1 101178653 101178660 NKX6_1_MA0674.1 7.884291318199360 + +chr1 101407936 101407943 NKX6_1_MA0674.1 7.898159335043551 - +chr1 101438489 101438496 NKX6_1_MA0674.1 7.938888499337807 + +chr1 102242126 102242133 NKX6_1_MA0674.1 8.443134592598145 + +chr1 103106648 103106655 NKX6_1_MA0674.1 7.898159335043551 + +chr1 103958734 103958741 NKX6_1_MA0674.1 8.497731773736591 + +chr1 103958771 103958778 NKX6_1_MA0674.1 7.898159335043551 - +chr1 103958786 103958793 NKX6_1_MA0674.1 7.898159335043551 - +chr1 104593234 104593241 NKX6_1_MA0674.1 7.842022151805627 + 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index 0000000..95f851b --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/NKX6_2_MA0675.1.bed @@ -0,0 +1,115 @@ +chr1 2526672 2526679 NKX6_2_MA0675.1 7.166511031116642 - +chr1 8097726 8097733 NKX6_2_MA0675.1 7.121002100698723 + +chr1 8097726 8097733 NKX6_2_MA0675.1 7.121002100698723 - +chr1 9950670 9950677 NKX6_2_MA0675.1 7.166511031116642 + +chr1 10694351 10694358 NKX6_2_MA0675.1 7.121002100698723 + +chr1 10694351 10694358 NKX6_2_MA0675.1 7.121002100698723 - +chr1 12449805 12449812 NKX6_2_MA0675.1 7.091399415396008 - +chr1 16544855 16544862 NKX6_2_MA0675.1 7.091399415396008 + +chr1 17141677 17141684 NKX6_2_MA0675.1 7.570402573471229 + +chr1 23720805 23720812 NKX6_2_MA0675.1 7.166511031116642 - +chr1 24965458 24965465 NKX6_2_MA0675.1 7.121002100698723 + +chr1 24965458 24965465 NKX6_2_MA0675.1 7.121002100698723 - +chr1 28329196 28329203 NKX6_2_MA0675.1 7.221233153308450 - +chr1 32628054 32628061 NKX6_2_MA0675.1 7.091399415396008 - +chr1 33903428 33903435 NKX6_2_MA0675.1 7.091399415396008 - 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7.121002100698723 + +chr1 66446280 66446287 NKX6_2_MA0675.1 7.121002100698723 - +chr1 74198642 74198649 NKX6_2_MA0675.1 7.166511031116642 + +chr1 74674577 74674584 NKX6_2_MA0675.1 7.166511031116642 + +chr1 74714193 74714200 NKX6_2_MA0675.1 7.166511031116642 - +chr1 74714673 74714680 NKX6_2_MA0675.1 7.570402573471229 + +chr1 74812310 74812317 NKX6_2_MA0675.1 7.221233153308450 + +chr1 75784662 75784669 NKX6_2_MA0675.1 7.570402573471229 + +chr1 77219833 77219840 NKX6_2_MA0675.1 7.221233153308450 - +chr1 77927738 77927745 NKX6_2_MA0675.1 7.121002100698723 + +chr1 77927738 77927745 NKX6_2_MA0675.1 7.121002100698723 - +chr1 77927742 77927749 NKX6_2_MA0675.1 7.121002100698723 + +chr1 77927742 77927749 NKX6_2_MA0675.1 7.121002100698723 - +chr1 77927932 77927939 NKX6_2_MA0675.1 7.091399415396008 - +chr1 78004715 78004722 NKX6_2_MA0675.1 7.570402573471229 - +chr1 78277582 78277589 NKX6_2_MA0675.1 7.166511031116642 - +chr1 78620096 78620103 NKX6_2_MA0675.1 7.221233153308450 + +chr1 78854870 78854877 NKX6_2_MA0675.1 7.091399415396008 - +chr1 79694791 79694798 NKX6_2_MA0675.1 7.091399415396008 - +chr1 80639816 80639823 NKX6_2_MA0675.1 7.091399415396008 - +chr1 83500947 83500954 NKX6_2_MA0675.1 7.091399415396008 + +chr1 84152723 84152730 NKX6_2_MA0675.1 7.570402573471229 - +chr1 86015763 86015770 NKX6_2_MA0675.1 7.420743329804560 - +chr1 87052491 87052498 NKX6_2_MA0675.1 7.121002100698723 + +chr1 87052491 87052498 NKX6_2_MA0675.1 7.121002100698723 - +chr1 87151750 87151757 NKX6_2_MA0675.1 7.091399415396008 + +chr1 87588236 87588243 NKX6_2_MA0675.1 7.091399415396008 + +chr1 87813277 87813284 NKX6_2_MA0675.1 7.091399415396008 + +chr1 87813679 87813686 NKX6_2_MA0675.1 7.221233153308450 - +chr1 89612033 89612040 NKX6_2_MA0675.1 7.091399415396008 - +chr1 89670029 89670036 NKX6_2_MA0675.1 7.091399415396008 - +chr1 90358467 90358474 NKX6_2_MA0675.1 7.091399415396008 + +chr1 91572188 91572195 NKX6_2_MA0675.1 7.570402573471229 - +chr1 92537310 92537317 NKX6_2_MA0675.1 7.091399415396008 + +chr1 92563512 92563519 NKX6_2_MA0675.1 7.091399415396008 - +chr1 92563908 92563915 NKX6_2_MA0675.1 7.121002100698723 + +chr1 92563908 92563915 NKX6_2_MA0675.1 7.121002100698723 - +chr1 92563912 92563919 NKX6_2_MA0675.1 7.121002100698723 + +chr1 92563912 92563919 NKX6_2_MA0675.1 7.121002100698723 - +chr1 92563916 92563923 NKX6_2_MA0675.1 7.121002100698723 + +chr1 92563916 92563923 NKX6_2_MA0675.1 7.121002100698723 - +chr1 94237128 94237135 NKX6_2_MA0675.1 7.420743329804560 - +chr1 95072533 95072540 NKX6_2_MA0675.1 7.091399415396008 - +chr1 95095708 95095715 NKX6_2_MA0675.1 7.091399415396008 - +chr1 96955265 96955272 NKX6_2_MA0675.1 7.091399415396008 + +chr1 97138748 97138755 NKX6_2_MA0675.1 7.221233153308450 - +chr1 97138790 97138797 NKX6_2_MA0675.1 7.570402573471229 + +chr1 97163762 97163769 NKX6_2_MA0675.1 7.420743329804560 - +chr1 97461659 97461666 NKX6_2_MA0675.1 7.091399415396008 + +chr1 97462108 97462115 NKX6_2_MA0675.1 7.091399415396008 + +chr1 97848691 97848698 NKX6_2_MA0675.1 7.091399415396008 + +chr1 101178653 101178660 NKX6_2_MA0675.1 7.166511031116642 + +chr1 101407936 101407943 NKX6_2_MA0675.1 7.091399415396008 - +chr1 101438177 101438184 NKX6_2_MA0675.1 7.221233153308450 + +chr1 102242113 102242120 NKX6_2_MA0675.1 7.221233153308450 - +chr1 102242126 102242133 NKX6_2_MA0675.1 7.570402573471229 + +chr1 103106648 103106655 NKX6_2_MA0675.1 7.091399415396008 + +chr1 103958734 103958741 NKX6_2_MA0675.1 7.420743329804560 + +chr1 103958771 103958778 NKX6_2_MA0675.1 7.091399415396008 - +chr1 103958786 103958793 NKX6_2_MA0675.1 7.091399415396008 - +chr1 104593234 104593241 NKX6_2_MA0675.1 7.121002100698723 + +chr1 104593234 104593241 NKX6_2_MA0675.1 7.121002100698723 - +chr1 104747268 104747275 NKX6_2_MA0675.1 7.091399415396008 - +chr1 106727210 106727217 NKX6_2_MA0675.1 7.121002100698723 + +chr1 106727210 106727217 NKX6_2_MA0675.1 7.121002100698723 - +chr1 106727214 106727221 NKX6_2_MA0675.1 7.420743329804560 - +chr1 107016639 107016646 NKX6_2_MA0675.1 7.570402573471229 - +chr1 107140351 107140358 NKX6_2_MA0675.1 7.221233153308450 - +chr1 107141141 107141148 NKX6_2_MA0675.1 7.420743329804560 + +chr1 107529880 107529887 NKX6_2_MA0675.1 7.570402573471229 + +chr1 107777117 107777124 NKX6_2_MA0675.1 7.420743329804560 + +chr1 107934727 107934734 NKX6_2_MA0675.1 7.091399415396008 - +chr1 107965498 107965505 NKX6_2_MA0675.1 7.221233153308450 - +chr1 108551424 108551431 NKX6_2_MA0675.1 7.570402573471229 - +chr1 113031392 113031399 NKX6_2_MA0675.1 7.221233153308450 + +chr1 113859832 113859839 NKX6_2_MA0675.1 7.091399415396008 + +chr1 113880853 113880860 NKX6_2_MA0675.1 7.166511031116642 + +chr1 114581647 114581654 NKX6_2_MA0675.1 7.420743329804560 - +chr1 115649506 115649513 NKX6_2_MA0675.1 7.166511031116642 + +chr1 116168808 116168815 NKX6_2_MA0675.1 7.091399415396008 + +chr1 119324057 119324064 NKX6_2_MA0675.1 7.221233153308450 + +chr1 119348236 119348243 NKX6_2_MA0675.1 7.166511031116642 + +chr1 119565090 119565097 NKX6_2_MA0675.1 7.570402573471229 + +chr1 145845293 145845300 NKX6_2_MA0675.1 7.091399415396008 + diff --git a/demo/known_tfbs_chr1_hg38/NOTO_MA0710.1.bed b/demo/known_tfbs_chr1_hg38/NOTO_MA0710.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/NR1A4_RXRA_MA1146.1.bed b/demo/known_tfbs_chr1_hg38/NR1A4_RXRA_MA1146.1.bed new file mode 100644 index 0000000..3124e7a --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/NR1A4_RXRA_MA1146.1.bed @@ -0,0 +1,110 @@ +chr1 827472 827486 NR1A4_RXRA_MA1146.1 8.480555718122497 + +chr1 1157854 1157868 NR1A4_RXRA_MA1146.1 6.984561130839614 + +chr1 1471684 1471698 NR1A4_RXRA_MA1146.1 7.346440682060535 - +chr1 3772323 3772337 NR1A4_RXRA_MA1146.1 8.764595837026979 + +chr1 3901285 3901299 NR1A4_RXRA_MA1146.1 7.202921269472926 - +chr1 6199596 6199610 NR1A4_RXRA_MA1146.1 8.453154102763756 - +chr1 6235405 6235419 NR1A4_RXRA_MA1146.1 7.164770066119240 + +chr1 8397623 8397637 NR1A4_RXRA_MA1146.1 7.203674948337516 - +chr1 9163770 9163784 NR1A4_RXRA_MA1146.1 7.001077216697250 - +chr1 9943351 9943365 NR1A4_RXRA_MA1146.1 8.508125514731173 + +chr1 9943351 9943365 NR1A4_RXRA_MA1146.1 7.093957305691112 - +chr1 13700491 13700505 NR1A4_RXRA_MA1146.1 7.337722446252404 + +chr1 13700989 13701003 NR1A4_RXRA_MA1146.1 7.310681197666263 + +chr1 13713250 13713264 NR1A4_RXRA_MA1146.1 7.955619068343114 + +chr1 13713250 13713264 NR1A4_RXRA_MA1146.1 7.472472150171407 - +chr1 14914062 14914076 NR1A4_RXRA_MA1146.1 7.341720327249854 + +chr1 16237213 16237227 NR1A4_RXRA_MA1146.1 7.479736174743752 + +chr1 16421082 16421096 NR1A4_RXRA_MA1146.1 9.074840366034111 - +chr1 17437923 17437937 NR1A4_RXRA_MA1146.1 8.653183321021759 - +chr1 19485239 19485253 NR1A4_RXRA_MA1146.1 7.545957546569387 + +chr1 19800186 19800200 NR1A4_RXRA_MA1146.1 7.486410878781643 + +chr1 21762387 21762401 NR1A4_RXRA_MA1146.1 7.475707165878368 - +chr1 23743714 23743728 NR1A4_RXRA_MA1146.1 7.681285387989487 + +chr1 23908984 23908998 NR1A4_RXRA_MA1146.1 7.298298519057278 - +chr1 25247905 25247919 NR1A4_RXRA_MA1146.1 7.089419269837304 + +chr1 26112046 26112060 NR1A4_RXRA_MA1146.1 6.973956818162368 + +chr1 26112046 26112060 NR1A4_RXRA_MA1146.1 8.219793376492570 - +chr1 26472414 26472428 NR1A4_RXRA_MA1146.1 7.067371116441045 - +chr1 26743976 26743990 NR1A4_RXRA_MA1146.1 9.177152831526648 + +chr1 26743976 26743990 NR1A4_RXRA_MA1146.1 8.164512046523578 - +chr1 26921650 26921664 NR1A4_RXRA_MA1146.1 7.875253436087035 - +chr1 31549688 31549702 NR1A4_RXRA_MA1146.1 8.026621208708159 + +chr1 31549688 31549702 NR1A4_RXRA_MA1146.1 9.491841328506851 - +chr1 33036886 33036900 NR1A4_RXRA_MA1146.1 8.256345389113804 - +chr1 34859625 34859639 NR1A4_RXRA_MA1146.1 8.439403870665370 + +chr1 34859625 34859639 NR1A4_RXRA_MA1146.1 7.069470997282052 - +chr1 35268787 35268801 NR1A4_RXRA_MA1146.1 9.900480160801276 + +chr1 35268787 35268801 NR1A4_RXRA_MA1146.1 8.154725772231458 - +chr1 35641673 35641687 NR1A4_RXRA_MA1146.1 7.216065034612360 + +chr1 35930774 35930788 NR1A4_RXRA_MA1146.1 7.414473289583866 + +chr1 37808271 37808285 NR1A4_RXRA_MA1146.1 7.326284509074156 - +chr1 39799683 39799697 NR1A4_RXRA_MA1146.1 9.724960363396907 + +chr1 39799683 39799697 NR1A4_RXRA_MA1146.1 8.864851620926562 - +chr1 40161503 40161517 NR1A4_RXRA_MA1146.1 9.303770638068803 + +chr1 40161503 40161517 NR1A4_RXRA_MA1146.1 8.167810874441257 - +chr1 40692254 40692268 NR1A4_RXRA_MA1146.1 9.120455192122959 + +chr1 40692254 40692268 NR1A4_RXRA_MA1146.1 10.709096651800589 - +chr1 41361037 41361051 NR1A4_RXRA_MA1146.1 7.626054584491007 - +chr1 42335047 42335061 NR1A4_RXRA_MA1146.1 7.315515463930387 + +chr1 42456454 42456468 NR1A4_RXRA_MA1146.1 7.112243392374175 - +chr1 43650434 43650448 NR1A4_RXRA_MA1146.1 7.823739634085613 - +chr1 44684677 44684691 NR1A4_RXRA_MA1146.1 8.266242796565587 + +chr1 44684677 44684691 NR1A4_RXRA_MA1146.1 7.988422107409844 - +chr1 50333408 50333422 NR1A4_RXRA_MA1146.1 9.088362749706075 - +chr1 50969693 50969707 NR1A4_RXRA_MA1146.1 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65895334 NR1A4_RXRA_MA1146.1 7.411806301806658 - +chr1 67736486 67736500 NR1A4_RXRA_MA1146.1 7.277885156959224 - +chr1 70221808 70221822 NR1A4_RXRA_MA1146.1 8.012439083123404 - +chr1 75614735 75614749 NR1A4_RXRA_MA1146.1 6.969633193823989 + +chr1 75796800 75796814 NR1A4_RXRA_MA1146.1 9.438344110067343 + +chr1 75796800 75796814 NR1A4_RXRA_MA1146.1 8.627332476965746 - +chr1 75981416 75981430 NR1A4_RXRA_MA1146.1 10.332583439904326 + +chr1 76154247 76154261 NR1A4_RXRA_MA1146.1 7.869105436037343 + +chr1 77219568 77219582 NR1A4_RXRA_MA1146.1 8.496162654016370 + +chr1 77219568 77219582 NR1A4_RXRA_MA1146.1 7.651885345907984 - +chr1 78277529 78277543 NR1A4_RXRA_MA1146.1 7.036945140673858 + +chr1 78277529 78277543 NR1A4_RXRA_MA1146.1 8.299146795052414 - +chr1 79711286 79711300 NR1A4_RXRA_MA1146.1 7.337081837731651 + +chr1 82979824 82979838 NR1A4_RXRA_MA1146.1 7.382007762605700 - +chr1 83501304 83501318 NR1A4_RXRA_MA1146.1 7.963382401013397 + +chr1 84997427 84997441 NR1A4_RXRA_MA1146.1 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93847393 NR1A4_RXRA_MA1146.1 7.324593478955210 - +chr1 93878829 93878843 NR1A4_RXRA_MA1146.1 8.236060369457418 - +chr1 94037617 94037631 NR1A4_RXRA_MA1146.1 7.709106654214476 + +chr1 94963013 94963027 NR1A4_RXRA_MA1146.1 7.362745632004136 - +chr1 99849797 99849811 NR1A4_RXRA_MA1146.1 7.347644896829860 + +chr1 99969598 99969612 NR1A4_RXRA_MA1146.1 8.082356393836138 + +chr1 100038452 100038466 NR1A4_RXRA_MA1146.1 7.810995519223773 + +chr1 100351503 100351517 NR1A4_RXRA_MA1146.1 9.010229614805578 - +chr1 101222042 101222056 NR1A4_RXRA_MA1146.1 7.436258723787948 - diff --git a/demo/known_tfbs_chr1_hg38/NR1H2_RXRA_MA0115.1.bed b/demo/known_tfbs_chr1_hg38/NR1H2_RXRA_MA0115.1.bed new file mode 100644 index 0000000..327f914 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/NR1H2_RXRA_MA0115.1.bed @@ -0,0 +1,212 @@ +chr1 2548279 2548295 NR1H2_RXRA_MA0115.1 -23.868319493844631 + +chr1 2556004 2556020 NR1H2_RXRA_MA0115.1 -24.602297377035558 - +chr1 3666646 3666662 NR1H2_RXRA_MA0115.1 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34859769 34859785 NR1H2_RXRA_MA0115.1 -9.359678255028221 - +chr1 34859954 34859970 NR1H2_RXRA_MA0115.1 -21.992234863682178 + +chr1 36464276 36464292 NR1H2_RXRA_MA0115.1 -24.868948094751918 - +chr1 37990217 37990233 NR1H2_RXRA_MA0115.1 -25.477753406290734 + +chr1 38475061 38475077 NR1H2_RXRA_MA0115.1 -22.644547591622860 - +chr1 38475326 38475342 NR1H2_RXRA_MA0115.1 -12.051377632498280 + +chr1 40691516 40691532 NR1H2_RXRA_MA0115.1 -25.315244322157120 + +chr1 40699916 40699932 NR1H2_RXRA_MA0115.1 -11.760221202772325 - +chr1 41751235 41751251 NR1H2_RXRA_MA0115.1 -25.477763656063374 + +chr1 41751488 41751504 NR1H2_RXRA_MA0115.1 -24.909784005668637 - +chr1 42335529 42335545 NR1H2_RXRA_MA0115.1 -25.295432057829871 - +chr1 42658195 42658211 NR1H2_RXRA_MA0115.1 3.211059378774391 - +chr1 42846461 42846477 NR1H2_RXRA_MA0115.1 -24.314614721256593 + +chr1 43389906 43389922 NR1H2_RXRA_MA0115.1 -9.197159546118378 + +chr1 44213711 44213727 NR1H2_RXRA_MA0115.1 -10.336584454382983 - +chr1 45686779 45686795 NR1H2_RXRA_MA0115.1 -25.254610104976241 - +chr1 51285180 51285196 NR1H2_RXRA_MA0115.1 -24.091473044931767 - +chr1 52032921 52032937 NR1H2_RXRA_MA0115.1 -24.622089016816243 - +chr1 55205101 55205117 NR1H2_RXRA_MA0115.1 -25.213788152122611 + +chr1 55215529 55215545 NR1H2_RXRA_MA0115.1 -23.726829056358827 + +chr1 56296625 56296641 NR1H2_RXRA_MA0115.1 -23.050020866181189 + +chr1 56821046 56821062 NR1H2_RXRA_MA0115.1 -12.233685022896049 + +chr1 58573889 58573905 NR1H2_RXRA_MA0115.1 -12.010550679702986 + +chr1 58815867 58815883 NR1H2_RXRA_MA0115.1 -23.868319493844631 + +chr1 59008047 59008063 NR1H2_RXRA_MA0115.1 -24.071660155608107 + +chr1 59008306 59008322 NR1H2_RXRA_MA0115.1 -24.496936069717446 - +chr1 59433033 59433049 NR1H2_RXRA_MA0115.1 -15.286566948065486 - +chr1 59697081 59697097 NR1H2_RXRA_MA0115.1 -22.908523095563623 + +chr1 60978756 60978772 NR1H2_RXRA_MA0115.1 -24.091473044931764 + +chr1 61050100 61050116 NR1H2_RXRA_MA0115.1 -25.092091396066401 + +chr1 62160039 62160055 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NR1H2_RXRA_MA0115.1 -22.012025878466449 - +chr1 99766568 99766584 NR1H2_RXRA_MA0115.1 -25.048580313025955 - +chr1 100536212 100536228 NR1H2_RXRA_MA0115.1 -22.746006469954569 + +chr1 101436610 101436626 NR1H2_RXRA_MA0115.1 -19.793722988341344 + +chr1 101567888 101567904 NR1H2_RXRA_MA0115.1 -20.605949252492234 - +chr1 104987469 104987485 NR1H2_RXRA_MA0115.1 -24.700276731480919 + +chr1 104987536 104987552 NR1H2_RXRA_MA0115.1 -21.829721154714008 + +chr1 105028174 105028190 NR1H2_RXRA_MA0115.1 -25.190070750511769 + +chr1 106996070 106996086 NR1H2_RXRA_MA0115.1 -22.482028882713024 - +chr1 107430907 107430923 NR1H2_RXRA_MA0115.1 -18.589757100622599 + +chr1 107963849 107963865 NR1H2_RXRA_MA0115.1 -23.273164167495679 - +chr1 109041606 109041622 NR1H2_RXRA_MA0115.1 -25.315244947153534 - +chr1 109425988 109426004 NR1H2_RXRA_MA0115.1 -23.621458790919302 - +chr1 109532880 109532896 NR1H2_RXRA_MA0115.1 -21.788899201860382 + +chr1 110034807 110034823 NR1H2_RXRA_MA0115.1 -24.213169800987977 + +chr1 110407965 110407981 NR1H2_RXRA_MA0115.1 -24.966928449190529 - +chr1 110619697 110619713 NR1H2_RXRA_MA0115.1 -10.275961486968004 + +chr1 111216400 111216416 NR1H2_RXRA_MA0115.1 -24.257445028243303 + +chr1 111222322 111222338 NR1H2_RXRA_MA0115.1 -24.253991753841603 + +chr1 112466380 112466396 NR1H2_RXRA_MA0115.1 -25.477763656063374 + +chr1 113859809 113859825 NR1H2_RXRA_MA0115.1 -12.926828661811790 + +chr1 113904724 113904740 NR1H2_RXRA_MA0115.1 -23.337703521960158 + +chr1 114670491 114670507 NR1H2_RXRA_MA0115.1 -25.007751027040573 + +chr1 114717090 114717106 NR1H2_RXRA_MA0115.1 -23.216006765903952 - +chr1 116737882 116737898 NR1H2_RXRA_MA0115.1 -23.523493394537027 - +chr1 116795018 116795034 NR1H2_RXRA_MA0115.1 -21.829721154714004 - +chr1 117654572 117654588 NR1H2_RXRA_MA0115.1 -21.829721154714004 - +chr1 119266611 119266627 NR1H2_RXRA_MA0115.1 -11.905180414263446 - +chr1 119323840 119323856 NR1H2_RXRA_MA0115.1 -23.053477057223777 + +chr1 119565036 119565052 NR1H2_RXRA_MA0115.1 -19.380880052331825 - +chr1 120850554 120850570 NR1H2_RXRA_MA0115.1 -25.477763656063374 - +chr1 144412989 144413005 NR1H2_RXRA_MA0115.1 -25.477763656063381 + +chr1 145281529 145281545 NR1H2_RXRA_MA0115.1 -25.477763656063381 + +chr1 145927490 145927506 NR1H2_RXRA_MA0115.1 -23.909141446698261 + +chr1 145979162 145979178 NR1H2_RXRA_MA0115.1 -13.494813312148196 + +chr1 145996962 145996978 NR1H2_RXRA_MA0115.1 -23.969778372176339 + +chr1 148523014 148523030 NR1H2_RXRA_MA0115.1 -25.477763656063381 + +chr1 150255785 150255801 NR1H2_RXRA_MA0115.1 -22.340543445168887 + +chr1 150364197 150364213 NR1H2_RXRA_MA0115.1 -22.685369544476490 - +chr1 151156518 151156534 NR1H2_RXRA_MA0115.1 -21.318891197672134 - +chr1 151282203 151282219 NR1H2_RXRA_MA0115.1 -24.845246692853070 + +chr1 151327233 151327249 NR1H2_RXRA_MA0115.1 -13.024799058135725 + +chr1 153922714 153922730 NR1H2_RXRA_MA0115.1 -25.356061900065498 + +chr1 153977353 153977369 NR1H2_RXRA_MA0115.1 -24.091473044931764 + +chr1 154182770 154182786 NR1H2_RXRA_MA0115.1 -13.619973592378749 + +chr1 154974837 154974853 NR1H2_RXRA_MA0115.1 -24.602286377265226 - +chr1 155244740 155244756 NR1H2_RXRA_MA0115.1 -25.129447783096783 + +chr1 156194010 156194026 NR1H2_RXRA_MA0115.1 -24.659454778627293 + +chr1 156489032 156489048 NR1H2_RXRA_MA0115.1 -24.825424678638047 + +chr1 156728901 156728917 NR1H2_RXRA_MA0115.1 -24.784607725726080 - +chr1 156740832 156740848 NR1H2_RXRA_MA0115.1 -12.521380011748448 + +chr1 158179688 158179704 NR1H2_RXRA_MA0115.1 -4.121911565175165 - +chr1 158830208 158830224 NR1H2_RXRA_MA0115.1 -22.340543445168883 - +chr1 159068533 159068549 NR1H2_RXRA_MA0115.1 -25.230892703365395 + +chr1 159077456 159077472 NR1H2_RXRA_MA0115.1 -23.337703521960155 + +chr1 159781077 159781093 NR1H2_RXRA_MA0115.1 -21.951412910828548 - +chr1 160263061 160263077 NR1H2_RXRA_MA0115.1 -13.271659761061070 - +chr1 162361756 162361772 NR1H2_RXRA_MA0115.1 -13.437663243688228 + +chr1 162361791 162361807 NR1H2_RXRA_MA0115.1 -25.007751027040570 - +chr1 162631015 162631031 NR1H2_RXRA_MA0115.1 -14.840276970484510 - +chr1 162790477 162790493 NR1H2_RXRA_MA0115.1 -25.477763656063377 + +chr1 163321980 163321996 NR1H2_RXRA_MA0115.1 -21.992234863682178 - +chr1 163321997 163322013 NR1H2_RXRA_MA0115.1 -23.216006765903945 - +chr1 163361493 163361509 NR1H2_RXRA_MA0115.1 -24.966929074186940 + +chr1 165686793 165686809 NR1H2_RXRA_MA0115.1 -24.966929074186947 + +chr1 165687079 165687095 NR1H2_RXRA_MA0115.1 -15.756554952593307 - +chr1 167500404 167500420 NR1H2_RXRA_MA0115.1 -15.286566948065486 + +chr1 167714637 167714653 NR1H2_RXRA_MA0115.1 -24.253991753841603 + +chr1 167936297 167936313 NR1H2_RXRA_MA0115.1 -24.537758022571083 - +chr1 168554102 168554118 NR1H2_RXRA_MA0115.1 -11.662247098157945 + +chr1 169162009 169162025 NR1H2_RXRA_MA0115.1 -17.531981347896238 - +chr1 169680877 169680893 NR1H2_RXRA_MA0115.1 -24.253981504068960 - +chr1 169693213 169693229 NR1H2_RXRA_MA0115.1 -22.012025878466449 - +chr1 169711558 169711574 NR1H2_RXRA_MA0115.1 -24.659454778627286 + +chr1 170214295 170214311 NR1H2_RXRA_MA0115.1 -25.477763656063374 + +chr1 170872903 170872919 NR1H2_RXRA_MA0115.1 -25.477763656063377 + +chr1 171841301 171841317 NR1H2_RXRA_MA0115.1 -21.910595957916588 - +chr1 172393885 172393901 NR1H2_RXRA_MA0115.1 -13.494813312148199 - +chr1 172725466 172725482 NR1H2_RXRA_MA0115.1 -23.928956419322709 + +chr1 172746322 172746338 NR1H2_RXRA_MA0115.1 -24.537758022571083 - +chr1 173195657 173195673 NR1H2_RXRA_MA0115.1 -23.216006765903948 - +chr1 173195673 173195689 NR1H2_RXRA_MA0115.1 -23.235797780688220 - +chr1 173213092 173213108 NR1H2_RXRA_MA0115.1 -23.686007103505194 - +chr1 173213108 173213124 NR1H2_RXRA_MA0115.1 -23.216006765903948 + +chr1 173414193 173414209 NR1H2_RXRA_MA0115.1 -8.014209596750241 + +chr1 173477837 173477853 NR1H2_RXRA_MA0115.1 -25.315234697380895 - +chr1 173824264 173824280 NR1H2_RXRA_MA0115.1 -24.700276731480916 + +chr1 174815336 174815352 NR1H2_RXRA_MA0115.1 -25.007749402050909 + +chr1 174968901 174968917 NR1H2_RXRA_MA0115.1 -24.439776001480396 + diff --git a/demo/known_tfbs_chr1_hg38/NR1H4_MA1110.1.bed b/demo/known_tfbs_chr1_hg38/NR1H4_MA1110.1.bed new file mode 100644 index 0000000..8756c69 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/NR1H4_MA1110.1.bed @@ -0,0 +1,117 @@ +chr1 1615594 1615604 NR1H4_MA1110.1 7.426279168340559 - +chr1 3677571 3677581 NR1H4_MA1110.1 8.732898736841582 + +chr1 3901289 3901299 NR1H4_MA1110.1 8.443709519012984 + +chr1 6490841 6490851 NR1H4_MA1110.1 8.746384580333125 - +chr1 7994276 7994286 NR1H4_MA1110.1 7.652703348053302 - +chr1 8097701 8097711 NR1H4_MA1110.1 7.791032113985592 - +chr1 8182870 8182880 NR1H4_MA1110.1 7.250530856367938 - +chr1 8525925 8525935 NR1H4_MA1110.1 7.167185920900264 + +chr1 10398672 10398682 NR1H4_MA1110.1 7.518298032441269 + +chr1 12052083 12052093 NR1H4_MA1110.1 7.408823949787978 - +chr1 13700940 13700950 NR1H4_MA1110.1 7.508660060650396 + +chr1 15524575 15524585 NR1H4_MA1110.1 7.488220728360999 + +chr1 16566995 16567005 NR1H4_MA1110.1 7.715223637071133 + +chr1 19485239 19485249 NR1H4_MA1110.1 7.287554925582366 - +chr1 20507897 20507907 NR1H4_MA1110.1 7.510863200838229 + +chr1 21866144 21866154 NR1H4_MA1110.1 8.644791497073856 + +chr1 25232732 25232742 NR1H4_MA1110.1 7.845178471210373 + +chr1 26169793 26169803 NR1H4_MA1110.1 7.455712366630268 - +chr1 27626179 27626189 NR1H4_MA1110.1 10.851010943074362 - +chr1 31549692 31549702 NR1H4_MA1110.1 7.938531766824497 + +chr1 32394440 32394450 NR1H4_MA1110.1 7.402252730646286 + +chr1 33349589 33349599 NR1H4_MA1110.1 7.266983802572904 + +chr1 36149943 36149953 NR1H4_MA1110.1 10.100929958213595 + +chr1 38475240 38475250 NR1H4_MA1110.1 7.406303014865532 + +chr1 39799683 39799693 NR1H4_MA1110.1 7.204397991259404 - +chr1 39799687 39799697 NR1H4_MA1110.1 7.707788659965593 + +chr1 40039697 40039707 NR1H4_MA1110.1 7.761179133918377 + +chr1 40040117 40040127 NR1H4_MA1110.1 7.685146187488363 + +chr1 40692258 40692268 NR1H4_MA1110.1 9.704840473698539 + +chr1 41751102 41751112 NR1H4_MA1110.1 8.972778047601214 + +chr1 42658200 42658210 NR1H4_MA1110.1 7.167529961366654 + +chr1 44684681 44684691 NR1H4_MA1110.1 8.159768692612591 + +chr1 44819829 44819839 NR1H4_MA1110.1 7.501845231738798 + +chr1 45011586 45011596 NR1H4_MA1110.1 9.734917923281312 - +chr1 55205253 55205263 NR1H4_MA1110.1 7.167680543592034 - +chr1 56135405 56135415 NR1H4_MA1110.1 7.413737991971075 - +chr1 56135565 56135575 NR1H4_MA1110.1 8.265412060091105 - +chr1 56565193 56565203 NR1H4_MA1110.1 8.130453729124183 - +chr1 58392283 58392293 NR1H4_MA1110.1 7.330736951467292 + +chr1 59814785 59814795 NR1H4_MA1110.1 7.175115375195075 - +chr1 60281125 60281135 NR1H4_MA1110.1 7.172594440272633 + +chr1 60281139 60281149 NR1H4_MA1110.1 7.180029417378172 + +chr1 60978563 60978573 NR1H4_MA1110.1 8.182411165089821 + +chr1 61783115 61783125 NR1H4_MA1110.1 7.630924488037423 - +chr1 63563875 63563885 NR1H4_MA1110.1 7.172851567125303 - +chr1 64172099 64172109 NR1H4_MA1110.1 7.319169578628571 - +chr1 64172837 64172847 NR1H4_MA1110.1 8.918332024137216 - +chr1 64957055 64957065 NR1H4_MA1110.1 7.418844191235020 - +chr1 66336097 66336107 NR1H4_MA1110.1 7.338171928572832 + +chr1 66336412 66336422 NR1H4_MA1110.1 8.281311845438683 - +chr1 66446150 66446160 NR1H4_MA1110.1 9.778099949166238 - +chr1 67166410 67166420 NR1H4_MA1110.1 7.144887488889424 + +chr1 67760368 67760378 NR1H4_MA1110.1 7.175115520697574 - +chr1 69321021 69321031 NR1H4_MA1110.1 8.515884032492933 + +chr1 74714503 74714513 NR1H4_MA1110.1 7.413737991971072 + +chr1 75614735 75614745 NR1H4_MA1110.1 9.614892813563101 - +chr1 75796691 75796701 NR1H4_MA1110.1 9.747779940564753 - +chr1 75796800 75796810 NR1H4_MA1110.1 7.356676402922090 - +chr1 77770866 77770876 NR1H4_MA1110.1 7.287554925582366 + +chr1 77927388 77927398 NR1H4_MA1110.1 7.508660060650396 + +chr1 77979440 77979450 NR1H4_MA1110.1 8.288746822544223 - +chr1 77979832 77979842 NR1H4_MA1110.1 7.143419885033375 + +chr1 78277533 78277543 NR1H4_MA1110.1 8.189846142195361 + 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NR1H4_MA1110.1 9.888205410118132 - +chr1 107777811 107777821 NR1H4_MA1110.1 7.707788659965593 + +chr1 108692169 108692179 NR1H4_MA1110.1 7.739534958229365 - +chr1 108692417 108692427 NR1H4_MA1110.1 8.012269039773686 - +chr1 108747364 108747374 NR1H4_MA1110.1 7.958047426103427 + +chr1 111140394 111140404 NR1H4_MA1110.1 8.360111873995338 - +chr1 111216267 111216277 NR1H4_MA1110.1 8.990506537617165 - +chr1 111216378 111216388 NR1H4_MA1110.1 8.516726435461965 + +chr1 112466608 112466618 NR1H4_MA1110.1 9.526543014776658 - +chr1 112715709 112715719 NR1H4_MA1110.1 9.055971304907658 + +chr1 112956763 112956773 NR1H4_MA1110.1 8.411082922480956 + +chr1 113390717 113390727 NR1H4_MA1110.1 7.264912453105135 + +chr1 116111251 116111261 NR1H4_MA1110.1 9.384149706704196 - +chr1 116288549 116288559 NR1H4_MA1110.1 7.762177430706594 + +chr1 116738970 116738980 NR1H4_MA1110.1 8.182411165089823 - +chr1 116769365 116769375 NR1H4_MA1110.1 8.037432447173355 + +chr1 116769530 116769540 NR1H4_MA1110.1 8.746627139351837 + +chr1 117654496 117654506 NR1H4_MA1110.1 7.600520133111569 + +chr1 119266609 119266619 NR1H4_MA1110.1 7.402252730646286 + +chr1 119324309 119324319 NR1H4_MA1110.1 7.172594440272633 + +chr1 119348018 119348028 NR1H4_MA1110.1 7.808656435569087 + diff --git a/demo/known_tfbs_chr1_hg38/NR2C2_MA0504.1.bed b/demo/known_tfbs_chr1_hg38/NR2C2_MA0504.1.bed new file mode 100644 index 0000000..5c98df9 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/NR2C2_MA0504.1.bed @@ -0,0 +1,929 @@ +chr1 10144 10158 NR2C2_MA0504.1 7.574836017935374 - +chr1 10228 10242 NR2C2_MA0504.1 7.574836017935374 - +chr1 10320 10334 NR2C2_MA0504.1 6.391895653013527 - +chr1 10327 10341 NR2C2_MA0504.1 7.574836017935374 - +chr1 10387 10401 NR2C2_MA0504.1 9.514068373165120 - +chr1 10394 10408 NR2C2_MA0504.1 7.574836017935374 - +chr1 10437 10451 NR2C2_MA0504.1 7.574836017935374 - +chr1 181588 181602 NR2C2_MA0504.1 6.420054347374836 + +chr1 779231 779245 NR2C2_MA0504.1 7.020557982033808 - +chr1 1013439 1013453 NR2C2_MA0504.1 6.884532616694027 - +chr1 1020032 1020046 NR2C2_MA0504.1 6.663318179747421 + +chr1 1273980 1273994 NR2C2_MA0504.1 6.217294620785083 + +chr1 1308547 1308561 NR2C2_MA0504.1 6.189359393270147 + +chr1 1399690 1399704 NR2C2_MA0504.1 6.896922668768781 + +chr1 1407334 1407348 NR2C2_MA0504.1 9.905425272705793 + +chr1 1407699 1407713 NR2C2_MA0504.1 6.217985907455192 - +chr1 1407706 1407720 NR2C2_MA0504.1 7.151238364438066 - +chr1 1471607 1471621 NR2C2_MA0504.1 8.154101827321284 - +chr1 1471614 1471628 NR2C2_MA0504.1 6.561241158619760 - +chr1 1678315 1678329 NR2C2_MA0504.1 6.741200773121263 - +chr1 1890620 1890634 NR2C2_MA0504.1 6.381186203931247 - +chr1 1908972 1908986 NR2C2_MA0504.1 6.737809801420381 + +chr1 1919449 1919463 NR2C2_MA0504.1 6.329806420599413 - +chr1 2413032 2413046 NR2C2_MA0504.1 6.985855378192815 - +chr1 2546413 2546427 NR2C2_MA0504.1 8.532807344002723 - +chr1 2548279 2548293 NR2C2_MA0504.1 8.109759674565829 + +chr1 2555924 2555938 NR2C2_MA0504.1 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6205963 6205977 NR2C2_MA0504.1 6.377715331241220 + +chr1 6261098 6261112 NR2C2_MA0504.1 8.500883352907747 + +chr1 6359586 6359600 NR2C2_MA0504.1 7.424350033900484 - +chr1 6393406 6393420 NR2C2_MA0504.1 10.584045457811607 + +chr1 6393884 6393898 NR2C2_MA0504.1 6.521976031351897 - +chr1 6490773 6490787 NR2C2_MA0504.1 6.049169987459284 + +chr1 6613455 6613469 NR2C2_MA0504.1 6.312049842977146 - +chr1 6614245 6614259 NR2C2_MA0504.1 7.497935981209419 - +chr1 6624922 6624936 NR2C2_MA0504.1 8.922732342577339 + +chr1 6701806 6701820 NR2C2_MA0504.1 10.484966644387235 - +chr1 6785725 6785739 NR2C2_MA0504.1 8.133281606120676 + +chr1 6861409 6861423 NR2C2_MA0504.1 7.474851908490892 - +chr1 6861437 6861451 NR2C2_MA0504.1 7.412996884151348 - +chr1 6861870 6861884 NR2C2_MA0504.1 7.373492978667430 - +chr1 7783818 7783832 NR2C2_MA0504.1 6.369038073757046 - +chr1 8525840 8525854 NR2C2_MA0504.1 6.078028431613082 - +chr1 8604460 8604474 NR2C2_MA0504.1 6.890549957649602 + +chr1 8878339 8878353 NR2C2_MA0504.1 8.990090339577764 - +chr1 8879096 8879110 NR2C2_MA0504.1 7.576657515519108 - +chr1 9163769 9163783 NR2C2_MA0504.1 8.956497714757832 + +chr1 9182379 9182393 NR2C2_MA0504.1 8.379491341034335 + +chr1 9539796 9539810 NR2C2_MA0504.1 7.570051193208522 - +chr1 9588750 9588764 NR2C2_MA0504.1 7.412083143818698 + +chr1 9687570 9687584 NR2C2_MA0504.1 6.095035827478173 + +chr1 9910606 9910620 NR2C2_MA0504.1 6.325816238478552 + +chr1 9942747 9942761 NR2C2_MA0504.1 7.859149028093851 + +chr1 10032793 10032807 NR2C2_MA0504.1 6.995785472834200 - +chr1 10033024 10033038 NR2C2_MA0504.1 7.029421724676303 + +chr1 10033237 10033251 NR2C2_MA0504.1 6.297111801372775 + +chr1 10210702 10210716 NR2C2_MA0504.1 8.586386879969538 - +chr1 10210974 10210988 NR2C2_MA0504.1 7.861669115539041 + +chr1 11012828 11012842 NR2C2_MA0504.1 6.179036564443102 - +chr1 11273035 11273049 NR2C2_MA0504.1 9.972208005390485 - +chr1 11664273 11664287 NR2C2_MA0504.1 6.848209306009207 + +chr1 11664312 11664326 NR2C2_MA0504.1 6.296567415840266 + +chr1 11681016 11681030 NR2C2_MA0504.1 7.697113388738726 - +chr1 11736464 11736478 NR2C2_MA0504.1 8.821402507582080 + +chr1 11926474 11926488 NR2C2_MA0504.1 6.116819828039606 + +chr1 11980355 11980369 NR2C2_MA0504.1 9.769633949999749 + +chr1 11980481 11980495 NR2C2_MA0504.1 10.279649170146588 + +chr1 12019333 12019347 NR2C2_MA0504.1 7.435574654086869 - +chr1 12047658 12047672 NR2C2_MA0504.1 7.724189433522195 + +chr1 12230687 12230701 NR2C2_MA0504.1 6.870957367289391 - +chr1 12436124 12436138 NR2C2_MA0504.1 7.282528657661527 - +chr1 15526733 15526747 NR2C2_MA0504.1 8.465625079802809 + +chr1 15617714 15617728 NR2C2_MA0504.1 9.881354389359670 - +chr1 15835554 15835568 NR2C2_MA0504.1 9.459672540793413 - +chr1 15835561 15835575 NR2C2_MA0504.1 6.916531703759815 - +chr1 15836040 15836054 NR2C2_MA0504.1 8.897717944036536 + +chr1 15966206 15966220 NR2C2_MA0504.1 6.330833164596257 - +chr1 15966457 15966471 NR2C2_MA0504.1 6.206169427202713 - +chr1 15975656 15975670 NR2C2_MA0504.1 11.737737993359382 + +chr1 15975796 15975810 NR2C2_MA0504.1 7.014743980203830 - +chr1 16352199 16352213 NR2C2_MA0504.1 7.356597760753832 + +chr1 16367768 16367782 NR2C2_MA0504.1 6.083320781896147 + +chr1 16499335 16499349 NR2C2_MA0504.1 6.627348860541164 + +chr1 16613673 16613687 NR2C2_MA0504.1 6.679675984728792 + +chr1 16644349 16644363 NR2C2_MA0504.1 7.067874573335648 + +chr1 16644853 16644867 NR2C2_MA0504.1 9.994271570990147 - +chr1 17011836 17011850 NR2C2_MA0504.1 7.244786688110780 + +chr1 17054041 17054055 NR2C2_MA0504.1 7.093441049824573 - +chr1 17437890 17437904 NR2C2_MA0504.1 6.313624898025634 + +chr1 18927407 18927421 NR2C2_MA0504.1 8.790095576636027 + +chr1 19209975 19209989 NR2C2_MA0504.1 10.490942834014843 + +chr1 19210312 19210326 NR2C2_MA0504.1 6.485264842050221 + +chr1 19210387 19210401 NR2C2_MA0504.1 6.182149161793959 - +chr1 19312550 19312564 NR2C2_MA0504.1 7.154006939552355 - +chr1 19799473 19799487 NR2C2_MA0504.1 7.892132704818039 - +chr1 19799717 19799731 NR2C2_MA0504.1 6.394035643014462 + +chr1 19799926 19799940 NR2C2_MA0504.1 7.183475108654520 - +chr1 19800097 19800111 NR2C2_MA0504.1 8.287235601223307 - +chr1 20508008 20508022 NR2C2_MA0504.1 6.102634924213149 - +chr1 20661650 20661664 NR2C2_MA0504.1 6.823376616057638 - +chr1 20786979 20786993 NR2C2_MA0504.1 7.532352634935343 + +chr1 21176695 21176709 NR2C2_MA0504.1 6.816756534986967 + +chr1 21293987 21294001 NR2C2_MA0504.1 7.925972565944297 + +chr1 21762649 21762663 NR2C2_MA0504.1 8.850542641632471 + +chr1 21866415 21866429 NR2C2_MA0504.1 9.832556485303241 - +chr1 22052937 22052951 NR2C2_MA0504.1 8.493791358256102 + +chr1 22053259 22053273 NR2C2_MA0504.1 7.796809448864523 + +chr1 22451708 22451722 NR2C2_MA0504.1 14.651145556874896 + +chr1 22451836 22451850 NR2C2_MA0504.1 8.736276617407768 - +chr1 23019694 23019708 NR2C2_MA0504.1 6.730015453284061 + +chr1 23168755 23168769 NR2C2_MA0504.1 6.974323157569430 - +chr1 23344176 23344190 NR2C2_MA0504.1 6.605998034304847 - 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9.679800305516967 + +chr1 28200183 28200197 NR2C2_MA0504.1 8.889908058087260 - +chr1 28370255 28370269 NR2C2_MA0504.1 8.258461132338107 - +chr1 28518337 28518351 NR2C2_MA0504.1 6.430313838751059 + +chr1 28581862 28581876 NR2C2_MA0504.1 6.863861860435876 + +chr1 28643173 28643187 NR2C2_MA0504.1 8.559547482435317 - +chr1 28668845 28668859 NR2C2_MA0504.1 6.340491351568602 + +chr1 28668941 28668955 NR2C2_MA0504.1 6.567576277452170 + +chr1 28669468 28669482 NR2C2_MA0504.1 6.078547511595549 + +chr1 30718399 30718413 NR2C2_MA0504.1 7.065505116723108 - +chr1 30718478 30718492 NR2C2_MA0504.1 7.820194797546058 - +chr1 30718516 30718530 NR2C2_MA0504.1 6.628923915589652 - +chr1 30718581 30718595 NR2C2_MA0504.1 8.258980746644648 - +chr1 31154996 31155010 NR2C2_MA0504.1 6.788450495725961 + +chr1 31155475 31155489 NR2C2_MA0504.1 6.875506309830407 + +chr1 31297179 31297193 NR2C2_MA0504.1 6.284852661598525 + +chr1 31549122 31549136 NR2C2_MA0504.1 7.323270282254981 + +chr1 31788760 31788774 NR2C2_MA0504.1 7.076229903864356 + +chr1 31789237 31789251 NR2C2_MA0504.1 6.200901079443452 - +chr1 32108251 32108265 NR2C2_MA0504.1 7.840133014088848 + +chr1 32222222 32222236 NR2C2_MA0504.1 8.717933862972668 + +chr1 32292080 32292094 NR2C2_MA0504.1 8.746585985738079 - +chr1 32351442 32351456 NR2C2_MA0504.1 8.910800897555596 - +chr1 32351474 32351488 NR2C2_MA0504.1 8.712746124611821 - +chr1 32394276 32394290 NR2C2_MA0504.1 8.012212082342325 - +chr1 32394606 32394620 NR2C2_MA0504.1 6.055115887087824 - +chr1 32394754 32394768 NR2C2_MA0504.1 6.442555056158064 + +chr1 32981032 32981046 NR2C2_MA0504.1 10.885579146152981 - +chr1 33180953 33180967 NR2C2_MA0504.1 6.562292965185656 - +chr1 33181871 33181885 NR2C2_MA0504.1 7.564028428422802 + +chr1 33181983 33181997 NR2C2_MA0504.1 8.708692784330697 - +chr1 33350317 33350331 NR2C2_MA0504.1 6.057531917165340 + +chr1 33472778 33472792 NR2C2_MA0504.1 9.230517388130028 + +chr1 34360911 34360925 NR2C2_MA0504.1 8.893828467014403 - +chr1 34860045 34860059 NR2C2_MA0504.1 9.781053166792631 - +chr1 34866304 34866318 NR2C2_MA0504.1 10.499336332313870 + +chr1 35031767 35031781 NR2C2_MA0504.1 8.488100645700850 - +chr1 35031955 35031969 NR2C2_MA0504.1 6.568247454025500 - +chr1 35079643 35079657 NR2C2_MA0504.1 6.215827239091200 - +chr1 35192151 35192165 NR2C2_MA0504.1 6.258952712190041 + +chr1 35192591 35192605 NR2C2_MA0504.1 6.059769314452465 + +chr1 36224440 36224454 NR2C2_MA0504.1 7.591119421727792 + +chr1 36224868 36224882 NR2C2_MA0504.1 6.672661197305194 - +chr1 36386451 36386465 NR2C2_MA0504.1 6.627574062330361 - +chr1 36450645 36450659 NR2C2_MA0504.1 6.223432906825368 + +chr1 36464028 36464042 NR2C2_MA0504.1 9.166776637690109 - +chr1 36464278 36464292 NR2C2_MA0504.1 12.841182172202311 - +chr1 36464670 36464684 NR2C2_MA0504.1 6.279234849500194 - +chr1 37474495 37474509 NR2C2_MA0504.1 6.903277333782814 - +chr1 37474733 37474747 NR2C2_MA0504.1 6.279234849500194 + +chr1 37554346 37554360 NR2C2_MA0504.1 6.103546001157262 + +chr1 37808436 37808450 NR2C2_MA0504.1 9.084177858558725 + +chr1 37859520 37859534 NR2C2_MA0504.1 6.725511468936251 - +chr1 38859976 38859990 NR2C2_MA0504.1 6.912441933007349 - +chr1 38991063 38991077 NR2C2_MA0504.1 6.118319211534217 + +chr1 39215175 39215189 NR2C2_MA0504.1 7.959317367379566 - +chr1 39576391 39576405 NR2C2_MA0504.1 8.428555286888729 + +chr1 39576445 39576459 NR2C2_MA0504.1 6.900948535468143 + +chr1 40040348 40040362 NR2C2_MA0504.1 6.932814441980192 - +chr1 40097027 40097041 NR2C2_MA0504.1 6.933951778805254 - +chr1 40161590 40161604 NR2C2_MA0504.1 7.746860190028398 + +chr1 40186590 40186604 NR2C2_MA0504.1 6.578605827750116 - +chr1 40374092 40374106 NR2C2_MA0504.1 11.985475705017787 - +chr1 40374432 40374446 NR2C2_MA0504.1 7.290364771655328 + +chr1 40691917 40691931 NR2C2_MA0504.1 6.312049842977146 + +chr1 40979675 40979689 NR2C2_MA0504.1 8.933679084417552 - +chr1 40980209 40980223 NR2C2_MA0504.1 6.848141000588269 - +chr1 41242246 41242260 NR2C2_MA0504.1 6.044117261537064 - 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9.013698808222227 + +chr1 155563225 155563237 NR2F1_MA0017.2 7.532280168652093 - +chr1 156226078 156226090 NR2F1_MA0017.2 8.533166206490542 - +chr1 156457405 156457417 NR2F1_MA0017.2 8.712191182395175 - +chr1 156488792 156488804 NR2F1_MA0017.2 7.461324114317416 + +chr1 156489031 156489043 NR2F1_MA0017.2 9.216074472848417 + +chr1 156591950 156591962 NR2F1_MA0017.2 8.876646615375982 + +chr1 157176765 157176777 NR2F1_MA0017.2 8.092336070398295 - +chr1 157181960 157181972 NR2F1_MA0017.2 7.987635542843822 - +chr1 158163239 158163251 NR2F1_MA0017.2 7.731335158648421 + +chr1 158179750 158179762 NR2F1_MA0017.2 9.610318413154207 + +chr1 158204108 158204120 NR2F1_MA0017.2 9.338952654123293 - +chr1 159077455 159077467 NR2F1_MA0017.2 8.912261499680760 + +chr1 159781363 159781375 NR2F1_MA0017.2 9.432404229389524 + +chr1 159924846 159924858 NR2F1_MA0017.2 9.619399490348256 + +chr1 159924929 159924941 NR2F1_MA0017.2 9.339327816196134 - +chr1 159925099 159925111 NR2F1_MA0017.2 7.898728741859667 + 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169161890 NR2F1_MA0017.2 11.233063433072639 + +chr1 170853602 170853614 NR2F1_MA0017.2 9.684275878191585 + +chr1 171251626 171251638 NR2F1_MA0017.2 9.090087477010416 + +chr1 172393658 172393670 NR2F1_MA0017.2 11.233063433072639 - +chr1 172725465 172725477 NR2F1_MA0017.2 8.217288034972713 + +chr1 172745606 172745618 NR2F1_MA0017.2 7.475331668421482 + +chr1 173414199 173414211 NR2F1_MA0017.2 8.639237205065784 + +chr1 173867892 173867904 NR2F1_MA0017.2 7.447871955157190 - +chr1 174968900 174968912 NR2F1_MA0017.2 9.855045717572024 + +chr1 174998955 174998967 NR2F1_MA0017.2 7.811825792593657 - +chr1 174999010 174999022 NR2F1_MA0017.2 7.811825792593657 - +chr1 175209659 175209671 NR2F1_MA0017.2 7.868503994905371 - +chr1 175209672 175209684 NR2F1_MA0017.2 8.092336070398295 + +chr1 175413249 175413261 NR2F1_MA0017.2 9.589524707083868 - +chr1 175599038 175599050 NR2F1_MA0017.2 9.756301333989491 + +chr1 175601244 175601256 NR2F1_MA0017.2 7.840849333025556 + +chr1 178543240 178543252 NR2F1_MA0017.2 7.618197345804846 - +chr1 178608315 178608327 NR2F1_MA0017.2 9.448629650967817 + +chr1 178660289 178660301 NR2F1_MA0017.2 7.809103032206629 + +chr1 178684821 178684833 NR2F1_MA0017.2 7.804069692490351 + +chr1 178934567 178934579 NR2F1_MA0017.2 8.162228888088846 + +chr1 179002720 179002732 NR2F1_MA0017.2 7.518002316629130 - +chr1 179034989 179035001 NR2F1_MA0017.2 7.920269038051298 - +chr1 180502409 180502421 NR2F1_MA0017.2 7.988946440849301 - +chr1 181105138 181105150 NR2F1_MA0017.2 9.064909423579195 + +chr1 181129349 181129361 NR2F1_MA0017.2 8.478194812285910 + +chr1 181134630 181134642 NR2F1_MA0017.2 7.764497345820059 + +chr1 181398110 181398122 NR2F1_MA0017.2 9.344677245910619 + +chr1 181430043 181430055 NR2F1_MA0017.2 9.794665815368496 - +chr1 181514485 181514497 NR2F1_MA0017.2 8.403470911471583 - +chr1 181514823 181514835 NR2F1_MA0017.2 11.403833272453078 - +chr1 181514830 181514842 NR2F1_MA0017.2 8.058867360296338 - +chr1 181936787 181936799 NR2F1_MA0017.2 8.580602953775857 - +chr1 182615543 182615555 NR2F1_MA0017.2 7.715116736356117 - +chr1 183989379 183989391 NR2F1_MA0017.2 9.230059496702191 + +chr1 184051886 184051898 NR2F1_MA0017.2 9.852431848123693 + +chr1 184163760 184163772 NR2F1_MA0017.2 10.132404013676794 - +chr1 185339521 185339533 NR2F1_MA0017.2 8.339300119896485 - +chr1 186194333 186194345 NR2F1_MA0017.2 8.751085577824311 + +chr1 186375546 186375558 NR2F1_MA0017.2 8.843582266213005 - +chr1 186482721 186482733 NR2F1_MA0017.2 9.031123736698692 + +chr1 190084370 190084382 NR2F1_MA0017.2 9.731131499503004 - +chr1 191582181 191582193 NR2F1_MA0017.2 8.997286696373331 + +chr1 192477376 192477388 NR2F1_MA0017.2 7.468758451803986 - +chr1 192551278 192551290 NR2F1_MA0017.2 8.122656541418555 - diff --git a/demo/known_tfbs_chr1_hg38/NR2F2_MA1111.1.bed b/demo/known_tfbs_chr1_hg38/NR2F2_MA1111.1.bed new file mode 100644 index 0000000..1b44db5 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/NR2F2_MA1111.1.bed @@ -0,0 +1,233 @@ +chr1 779229 779239 NR2F2_MA1111.1 7.869136717259839 - +chr1 1505192 1505202 NR2F2_MA1111.1 8.530277462099775 + +chr1 1677864 1677874 NR2F2_MA1111.1 8.775557808460038 + +chr1 3666653 3666663 NR2F2_MA1111.1 7.188556697299746 - +chr1 3900373 3900383 NR2F2_MA1111.1 9.201303234861211 + +chr1 6206407 6206417 NR2F2_MA1111.1 7.680157987652158 - +chr1 7954118 7954128 NR2F2_MA1111.1 9.486934196275062 - +chr1 8525927 8525937 NR2F2_MA1111.1 7.306868483255820 - +chr1 8817331 8817341 NR2F2_MA1111.1 9.470713206720372 - +chr1 9181539 9181549 NR2F2_MA1111.1 7.519866182597656 - +chr1 9588756 9588766 NR2F2_MA1111.1 8.808741545779309 + +chr1 9629573 9629583 NR2F2_MA1111.1 9.555475025281389 - +chr1 12230640 12230650 NR2F2_MA1111.1 7.219913794572265 + +chr1 13749620 13749630 NR2F2_MA1111.1 9.227050754075464 - +chr1 15524934 15524944 NR2F2_MA1111.1 9.037616032601221 + +chr1 15526739 15526749 NR2F2_MA1111.1 7.361934774323702 + +chr1 15617712 15617722 NR2F2_MA1111.1 9.227050754075464 - +chr1 16905378 16905388 NR2F2_MA1111.1 8.737167909798311 + +chr1 16905573 16905583 NR2F2_MA1111.1 8.260312419393816 + +chr1 17054248 17054258 NR2F2_MA1111.1 8.459471011117127 - +chr1 19596830 19596840 NR2F2_MA1111.1 9.241272409209781 + +chr1 19799451 19799461 NR2F2_MA1111.1 9.555475025281389 - +chr1 19799478 19799488 NR2F2_MA1111.1 9.501128133870287 - +chr1 20507899 20507909 NR2F2_MA1111.1 8.753388899353000 - +chr1 21293986 21293996 NR2F2_MA1111.1 7.210413605496880 + +chr1 21791771 21791781 NR2F2_MA1111.1 7.240760058028521 + +chr1 22039857 22039867 NR2F2_MA1111.1 9.129729598880214 - +chr1 22451707 22451717 NR2F2_MA1111.1 9.633834098291684 + +chr1 22451714 22451724 NR2F2_MA1111.1 8.110177237514918 + +chr1 26036134 26036144 NR2F2_MA1111.1 7.186413166617420 + +chr1 29182264 29182274 NR2F2_MA1111.1 9.162913336199484 - +chr1 30719228 30719238 NR2F2_MA1111.1 9.112741034521543 + +chr1 30743954 30743964 NR2F2_MA1111.1 9.555475025281389 - +chr1 32394442 32394452 NR2F2_MA1111.1 9.697999233706756 - +chr1 33036683 33036693 NR2F2_MA1111.1 9.392793578036605 - +chr1 33180889 33180899 NR2F2_MA1111.1 8.737167909798311 - +chr1 33181133 33181143 NR2F2_MA1111.1 9.043523043374423 - +chr1 34360905 34360915 NR2F2_MA1111.1 7.470640299865640 + +chr1 34530600 34530610 NR2F2_MA1111.1 7.284078929987336 - +chr1 34860126 34860136 NR2F2_MA1111.1 8.807735790764102 - +chr1 34866473 34866483 NR2F2_MA1111.1 9.436084732456326 + +chr1 36224006 36224016 NR2F2_MA1111.1 9.422769060859991 + +chr1 37554352 37554362 NR2F2_MA1111.1 8.143216696338252 + +chr1 37989806 37989816 NR2F2_MA1111.1 8.261698406341742 + +chr1 38475068 38475078 NR2F2_MA1111.1 10.096467933561861 - +chr1 38559493 38559503 NR2F2_MA1111.1 9.162913336199484 + +chr1 38559524 38559534 NR2F2_MA1111.1 8.534517288204958 + +chr1 40097622 40097632 NR2F2_MA1111.1 9.555475025281389 + +chr1 40532027 40532037 NR2F2_MA1111.1 8.675029826342705 + +chr1 41487416 41487426 NR2F2_MA1111.1 8.410245128385110 + +chr1 41752225 41752235 NR2F2_MA1111.1 7.240760058028521 - +chr1 42456274 42456284 NR2F2_MA1111.1 7.229228809902304 + +chr1 42658202 42658212 NR2F2_MA1111.1 8.776378693491585 - +chr1 42682720 42682730 NR2F2_MA1111.1 8.101876105952366 + +chr1 43221687 43221697 NR2F2_MA1111.1 9.855427413306781 + +chr1 44029899 44029909 NR2F2_MA1111.1 7.639112196926782 - +chr1 44684596 44684606 NR2F2_MA1111.1 8.128992441920344 - +chr1 44684640 44684650 NR2F2_MA1111.1 9.146956343450110 + +chr1 44684683 44684693 NR2F2_MA1111.1 7.362438002997633 - +chr1 45687592 45687602 NR2F2_MA1111.1 9.555475025281389 + +chr1 46303373 46303383 NR2F2_MA1111.1 9.305409827085759 + +chr1 50333424 50333434 NR2F2_MA1111.1 9.555475025281389 + +chr1 50724720 50724730 NR2F2_MA1111.1 9.247106002848644 + +chr1 55205107 55205117 NR2F2_MA1111.1 7.240760058028521 + +chr1 55205251 55205261 NR2F2_MA1111.1 9.716814438112182 + +chr1 56135437 56135447 NR2F2_MA1111.1 9.941633968812573 - +chr1 56565305 56565315 NR2F2_MA1111.1 7.780630490079735 + +chr1 57167932 57167942 NR2F2_MA1111.1 9.068597270439813 + 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9.034381961511247 + +chr1 64957053 64957063 NR2F2_MA1111.1 8.104293465681742 + +chr1 64960845 64960855 NR2F2_MA1111.1 7.519866182597656 - +chr1 65812201 65812211 NR2F2_MA1111.1 10.096467933561861 - +chr1 66282704 66282714 NR2F2_MA1111.1 7.639112196926782 - +chr1 66336112 66336122 NR2F2_MA1111.1 8.754394654368207 - +chr1 66380955 66380965 NR2F2_MA1111.1 7.246550507844881 + +chr1 66396039 66396049 NR2F2_MA1111.1 7.821532002309173 + +chr1 66396194 66396204 NR2F2_MA1111.1 8.764416918805285 + +chr1 67214377 67214387 NR2F2_MA1111.1 7.519866182597656 - +chr1 70411863 70411873 NR2F2_MA1111.1 9.242204747090650 + +chr1 70685557 70685567 NR2F2_MA1111.1 7.470640299865640 - +chr1 72433873 72433883 NR2F2_MA1111.1 9.700593448557493 + +chr1 72623291 72623301 NR2F2_MA1111.1 8.672612466613327 + +chr1 75785497 75785507 NR2F2_MA1111.1 7.547452023230761 + +chr1 76294715 76294725 NR2F2_MA1111.1 8.905915823195031 + +chr1 76939315 76939325 NR2F2_MA1111.1 9.855427413306781 + +chr1 77219574 77219584 NR2F2_MA1111.1 9.500249867871398 - +chr1 77770603 77770613 NR2F2_MA1111.1 8.073696751225583 - +chr1 78277535 78277545 NR2F2_MA1111.1 7.404316589718594 - +chr1 78377576 78377586 NR2F2_MA1111.1 7.780630490079735 + +chr1 79193507 79193517 NR2F2_MA1111.1 7.363141248442105 + +chr1 79260009 79260019 NR2F2_MA1111.1 7.450133467319101 - +chr1 79260359 79260369 NR2F2_MA1111.1 8.914991668686184 - +chr1 80218302 80218312 NR2F2_MA1111.1 7.229732038576236 + +chr1 81549096 81549106 NR2F2_MA1111.1 8.261698406341742 - +chr1 81549405 81549415 NR2F2_MA1111.1 9.855427413306781 - +chr1 82152782 82152792 NR2F2_MA1111.1 7.561676277648669 - +chr1 83485992 83486002 NR2F2_MA1111.1 9.524117928008872 + +chr1 83500235 83500245 NR2F2_MA1111.1 9.284563563629503 + +chr1 83501253 83501263 NR2F2_MA1111.1 8.143216696338252 + +chr1 84090638 84090648 NR2F2_MA1111.1 7.547452023230760 - +chr1 84573128 84573138 NR2F2_MA1111.1 8.994297160642406 + +chr1 84945300 84945310 NR2F2_MA1111.1 7.243956292994143 + +chr1 84995973 84995983 NR2F2_MA1111.1 7.537022554139991 - +chr1 85335344 85335354 NR2F2_MA1111.1 7.702298216235510 - +chr1 87132005 87132015 NR2F2_MA1111.1 8.737167909798311 + +chr1 87450089 87450099 NR2F2_MA1111.1 8.716937093587349 - +chr1 87587960 87587970 NR2F2_MA1111.1 10.367379395213746 - +chr1 88868432 88868442 NR2F2_MA1111.1 10.234673430792348 - +chr1 89065040 89065050 NR2F2_MA1111.1 9.565293269285359 - +chr1 90509909 90509919 NR2F2_MA1111.1 8.733059821532770 + +chr1 91022289 91022299 NR2F2_MA1111.1 8.415146384143103 + +chr1 91165849 91165859 NR2F2_MA1111.1 9.505302723603446 + +chr1 91166237 91166247 NR2F2_MA1111.1 9.521974397326543 - +chr1 92537638 92537648 NR2F2_MA1111.1 7.991695527511428 + +chr1 92538234 92538244 NR2F2_MA1111.1 8.865765785954167 + +chr1 92584249 92584259 NR2F2_MA1111.1 7.793946161676069 + +chr1 93703796 93703806 NR2F2_MA1111.1 8.361661286542697 - +chr1 93708204 93708214 NR2F2_MA1111.1 8.716937093587349 - +chr1 94542346 94542356 NR2F2_MA1111.1 9.038621787616428 + +chr1 95095624 95095634 NR2F2_MA1111.1 8.892001874547599 - +chr1 97159128 97159138 NR2F2_MA1111.1 7.736430752838443 + +chr1 98662137 98662147 NR2F2_MA1111.1 8.927078977286861 - +chr1 100046982 100046992 NR2F2_MA1111.1 8.726012939078503 + +chr1 100351302 100351312 NR2F2_MA1111.1 7.337934335444243 + +chr1 101025943 101025953 NR2F2_MA1111.1 9.193894734295286 + +chr1 101052151 101052161 NR2F2_MA1111.1 7.682547629842439 - +chr1 101136904 101136914 NR2F2_MA1111.1 9.883013253939884 + +chr1 101222004 101222014 NR2F2_MA1111.1 8.760157703936896 + +chr1 101222048 101222058 NR2F2_MA1111.1 7.324980442216773 - +chr1 101407752 101407762 NR2F2_MA1111.1 10.597259637050866 + +chr1 101436502 101436512 NR2F2_MA1111.1 8.361759548151966 + +chr1 101445373 101445383 NR2F2_MA1111.1 8.738100247679180 - +chr1 102434590 102434600 NR2F2_MA1111.1 9.633834098291684 - +chr1 102434621 102434631 NR2F2_MA1111.1 8.675029826342705 + +chr1 102434662 102434672 NR2F2_MA1111.1 8.861591196221008 + +chr1 102435116 102435126 NR2F2_MA1111.1 8.892001874547599 - +chr1 104593625 104593635 NR2F2_MA1111.1 8.679204416075862 + +chr1 104759733 104759743 NR2F2_MA1111.1 8.206402715646981 - +chr1 107057594 107057604 NR2F2_MA1111.1 7.906140628973640 - +chr1 107430913 107430923 NR2F2_MA1111.1 7.537022554139991 + +chr1 107499326 107499336 NR2F2_MA1111.1 9.974817706131844 - +chr1 109532879 109532889 NR2F2_MA1111.1 7.682547629842440 + +chr1 110034813 110034823 NR2F2_MA1111.1 7.717615548433018 + +chr1 110407965 110407975 NR2F2_MA1111.1 8.143216696338252 - +chr1 110619703 110619713 NR2F2_MA1111.1 9.703906244479958 + +chr1 111216265 111216275 NR2F2_MA1111.1 8.848637302993540 + +chr1 116288551 116288561 NR2F2_MA1111.1 8.807735790764102 - +chr1 116504191 116504201 NR2F2_MA1111.1 8.415146384143103 + +chr1 116597061 116597071 NR2F2_MA1111.1 10.247989102388685 + +chr1 116738968 116738978 NR2F2_MA1111.1 8.886094863774398 + +chr1 116769674 116769684 NR2F2_MA1111.1 10.096467933561861 + +chr1 117059539 117059549 NR2F2_MA1111.1 9.633834098291684 - +chr1 118960424 118960434 NR2F2_MA1111.1 7.991695527511428 - +chr1 119140322 119140332 NR2F2_MA1111.1 7.760906702852736 + +chr1 119266611 119266621 NR2F2_MA1111.1 9.697999233706756 - +chr1 119324311 119324321 NR2F2_MA1111.1 8.546498451654465 - +chr1 119565358 119565368 NR2F2_MA1111.1 7.760906702852736 - +chr1 119662610 119662620 NR2F2_MA1111.1 8.364974082465162 + +chr1 120850892 120850902 NR2F2_MA1111.1 7.319119131038818 + +chr1 120942531 120942541 NR2F2_MA1111.1 8.303631291352630 - +chr1 145979190 145979200 NR2F2_MA1111.1 9.260087613615207 - +chr1 147084453 147084463 NR2F2_MA1111.1 8.364974082465162 - +chr1 148402646 148402656 NR2F2_MA1111.1 8.303631291352630 - +chr1 148522682 148522692 NR2F2_MA1111.1 7.319119131038818 - +chr1 149636697 149636707 NR2F2_MA1111.1 8.303631291352630 - +chr1 149886956 149886966 NR2F2_MA1111.1 7.198606361984496 - +chr1 150255619 150255629 NR2F2_MA1111.1 7.606072738103450 + +chr1 150562389 150562399 NR2F2_MA1111.1 7.606072738103450 - 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157806869 NR2F2_MA1111.1 8.930391773209326 + +chr1 158179688 158179698 NR2F2_MA1111.1 8.807735790764102 - +chr1 158179750 158179760 NR2F2_MA1111.1 8.689351252954246 + +chr1 158179984 158179994 NR2F2_MA1111.1 7.249863303767345 + +chr1 158204110 158204120 NR2F2_MA1111.1 9.524117928008872 - +chr1 158831098 158831108 NR2F2_MA1111.1 7.366859028937734 - +chr1 159924887 159924897 NR2F2_MA1111.1 8.060974593722928 + +chr1 160284942 160284952 NR2F2_MA1111.1 8.143216696338252 - +chr1 160429236 160429246 NR2F2_MA1111.1 7.717615548433017 - +chr1 160429284 160429294 NR2F2_MA1111.1 7.202780951717655 + +chr1 160768436 160768446 NR2F2_MA1111.1 9.051370525869917 + +chr1 160797397 160797407 NR2F2_MA1111.1 7.760906702852736 - +chr1 160797529 160797539 NR2F2_MA1111.1 8.672612466613327 + +chr1 161706945 161706955 NR2F2_MA1111.1 9.193894734295286 - +chr1 165631558 165631568 NR2F2_MA1111.1 8.861591196221008 + +chr1 165754002 165754012 NR2F2_MA1111.1 8.072719676734060 - +chr1 165827595 165827605 NR2F2_MA1111.1 7.319119131038818 - +chr1 165857080 165857090 NR2F2_MA1111.1 8.675029826342705 - +chr1 165878242 165878252 NR2F2_MA1111.1 10.018108860551564 - +chr1 166839234 166839244 NR2F2_MA1111.1 7.219913794572265 + +chr1 166975662 166975672 NR2F2_MA1111.1 9.654680361747941 + +chr1 167500410 167500420 NR2F2_MA1111.1 7.206498732213285 + +chr1 168504310 168504320 NR2F2_MA1111.1 9.311271138263717 - +chr1 168510142 168510152 NR2F2_MA1111.1 8.922839151181680 - +chr1 168554108 168554118 NR2F2_MA1111.1 9.654680361747941 + +chr1 169025360 169025370 NR2F2_MA1111.1 8.546498451654465 - +chr1 169105875 169105885 NR2F2_MA1111.1 7.949459500932455 - +chr1 169106417 169106427 NR2F2_MA1111.1 7.717615548433018 + +chr1 169161878 169161888 NR2F2_MA1111.1 8.031818164504621 + +chr1 169915589 169915599 NR2F2_MA1111.1 9.001198224191976 - +chr1 170067455 170067465 NR2F2_MA1111.1 7.409231955089663 + +chr1 170532280 170532290 NR2F2_MA1111.1 7.780630490079735 + +chr1 171485479 171485489 NR2F2_MA1111.1 7.270206797131564 - diff --git a/demo/known_tfbs_chr1_hg38/NR3C1_MA0113.3.bed b/demo/known_tfbs_chr1_hg38/NR3C1_MA0113.3.bed new file mode 100644 index 0000000..19c0ff9 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/NR3C1_MA0113.3.bed @@ -0,0 +1,117 @@ +chr1 2642877 2642893 NR3C1_MA0113.3 3.214016821159823 + +chr1 3625256 3625272 NR3C1_MA0113.3 8.288713845340592 + +chr1 3625256 3625272 NR3C1_MA0113.3 8.165449626752379 - +chr1 3656292 3656308 NR3C1_MA0113.3 3.086261810580789 - +chr1 3666693 3666709 NR3C1_MA0113.3 6.664035562974324 + +chr1 3666693 3666709 NR3C1_MA0113.3 6.617893958853008 - +chr1 9181848 9181864 NR3C1_MA0113.3 4.452984076231949 + +chr1 9181848 9181864 NR3C1_MA0113.3 5.222849452807463 - +chr1 9910749 9910765 NR3C1_MA0113.3 6.717215614317521 + +chr1 9910749 9910765 NR3C1_MA0113.3 5.580269330083762 - +chr1 11909706 11909722 NR3C1_MA0113.3 5.087010380140360 + +chr1 16420919 16420935 NR3C1_MA0113.3 4.923647422850272 + +chr1 16420919 16420935 NR3C1_MA0113.3 4.655592168043140 - +chr1 16644902 16644918 NR3C1_MA0113.3 3.493908759175427 + +chr1 16644902 16644918 NR3C1_MA0113.3 2.944563424212765 - +chr1 20507936 20507952 NR3C1_MA0113.3 3.154993377108867 + +chr1 20507936 20507952 NR3C1_MA0113.3 2.946440555269045 - +chr1 21783651 21783667 NR3C1_MA0113.3 4.059591488058411 + +chr1 21783651 21783667 NR3C1_MA0113.3 4.199554256857449 - +chr1 23743824 23743840 NR3C1_MA0113.3 3.557874670183277 - +chr1 23959456 23959472 NR3C1_MA0113.3 3.169838497863600 - +chr1 25549933 25549949 NR3C1_MA0113.3 4.720358047115135 + +chr1 25549933 25549949 NR3C1_MA0113.3 3.909272637089502 - +chr1 26336684 26336700 NR3C1_MA0113.3 6.031626656747432 + +chr1 26336684 26336700 NR3C1_MA0113.3 6.095498553686808 - +chr1 26620439 26620455 NR3C1_MA0113.3 6.252863482695099 + +chr1 26620439 26620455 NR3C1_MA0113.3 6.492240033341107 - +chr1 26621038 26621054 NR3C1_MA0113.3 13.283351659764085 + +chr1 26621038 26621054 NR3C1_MA0113.3 13.561852947370420 - +chr1 26744109 26744125 NR3C1_MA0113.3 5.073184281762894 + +chr1 26744109 26744125 NR3C1_MA0113.3 4.678070689284850 - +chr1 26890020 26890036 NR3C1_MA0113.3 2.826239002679769 + +chr1 32992858 32992874 NR3C1_MA0113.3 3.901781556265237 + +chr1 32992858 32992874 NR3C1_MA0113.3 4.054711974339396 - +chr1 33037066 33037082 NR3C1_MA0113.3 4.167600490702663 - +chr1 37901564 37901580 NR3C1_MA0113.3 10.662432964605935 + +chr1 37901564 37901580 NR3C1_MA0113.3 10.829248633718644 - +chr1 38028325 38028341 NR3C1_MA0113.3 3.059019429293171 + +chr1 38028325 38028341 NR3C1_MA0113.3 3.467801554929840 - +chr1 40385820 40385836 NR3C1_MA0113.3 11.577686262968959 + +chr1 40385820 40385836 NR3C1_MA0113.3 12.447399506311466 - +chr1 41003843 41003859 NR3C1_MA0113.3 3.209476141099003 + +chr1 41003843 41003859 NR3C1_MA0113.3 2.824667383759662 - +chr1 43707169 43707185 NR3C1_MA0113.3 3.639368205759698 - +chr1 54542518 54542534 NR3C1_MA0113.3 3.109410114877470 + +chr1 54542518 54542534 NR3C1_MA0113.3 3.195682273115729 - +chr1 64172532 64172548 NR3C1_MA0113.3 4.822933463446696 - 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- +chr1 87464050 87464066 NR3C1_MA0113.3 4.431352209060989 + +chr1 87464050 87464066 NR3C1_MA0113.3 4.533086501798408 - +chr1 87813310 87813326 NR3C1_MA0113.3 7.087471203525906 + +chr1 87813310 87813326 NR3C1_MA0113.3 6.323310389164249 - +chr1 89064937 89064953 NR3C1_MA0113.3 3.753010008383914 - +chr1 89995487 89995503 NR3C1_MA0113.3 2.892993948244087 + +chr1 90127529 90127545 NR3C1_MA0113.3 5.558081560566251 + +chr1 90127529 90127545 NR3C1_MA0113.3 4.998394742184378 - +chr1 91022028 91022044 NR3C1_MA0113.3 4.155134523952870 + +chr1 91022028 91022044 NR3C1_MA0113.3 3.672238272699396 - +chr1 91804566 91804582 NR3C1_MA0113.3 5.127199032598894 + +chr1 91804566 91804582 NR3C1_MA0113.3 5.334903524806031 - +chr1 92975841 92975857 NR3C1_MA0113.3 6.359164618189246 + +chr1 92975841 92975857 NR3C1_MA0113.3 6.097867447353719 - +chr1 93345421 93345437 NR3C1_MA0113.3 4.769136021290006 + +chr1 93345421 93345437 NR3C1_MA0113.3 2.957955504730489 - +chr1 94418300 94418316 NR3C1_MA0113.3 4.492090364030341 + +chr1 96721562 96721578 NR3C1_MA0113.3 3.826371851917162 + +chr1 96721562 96721578 NR3C1_MA0113.3 2.757748188594419 - +chr1 101052259 101052275 NR3C1_MA0113.3 2.820417143780474 + +chr1 101052259 101052275 NR3C1_MA0113.3 2.930643155377894 - +chr1 101235676 101235692 NR3C1_MA0113.3 4.062763942039259 + +chr1 101444800 101444816 NR3C1_MA0113.3 7.854559206250663 + +chr1 101444800 101444816 NR3C1_MA0113.3 7.953572293698791 - +chr1 103562239 103562255 NR3C1_MA0113.3 12.246678669183680 + +chr1 103562239 103562255 NR3C1_MA0113.3 11.683817500277220 - +chr1 104987440 104987456 NR3C1_MA0113.3 2.766771320281789 - +chr1 106996345 106996361 NR3C1_MA0113.3 3.954233106039416 + +chr1 106996345 106996361 NR3C1_MA0113.3 4.012980938186285 - +chr1 111346313 111346329 NR3C1_MA0113.3 4.422365475684302 - +chr1 111620231 111620247 NR3C1_MA0113.3 12.907847460056967 + +chr1 111620231 111620247 NR3C1_MA0113.3 13.388506583967121 - +chr1 114757511 114757527 NR3C1_MA0113.3 5.864494539158499 + 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153946609 NR3C1_MA0113.3 4.527514357829559 - +chr1 154860210 154860226 NR3C1_MA0113.3 5.919037364256712 - +chr1 154937083 154937099 NR3C1_MA0113.3 4.387021440886081 + +chr1 154937083 154937099 NR3C1_MA0113.3 5.241154521066631 - diff --git a/demo/known_tfbs_chr1_hg38/NR3C2_MA0727.1.bed b/demo/known_tfbs_chr1_hg38/NR3C2_MA0727.1.bed new file mode 100644 index 0000000..fc0a685 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/NR3C2_MA0727.1.bed @@ -0,0 +1,117 @@ +chr1 3625256 3625272 NR3C2_MA0727.1 8.173480614731144 + +chr1 3625256 3625272 NR3C2_MA0727.1 9.466133752671523 - +chr1 3666693 3666709 NR3C2_MA0727.1 7.130869872877579 + +chr1 3666693 3666709 NR3C2_MA0727.1 7.184329771604070 - +chr1 9181848 9181864 NR3C2_MA0727.1 3.795753995913529 + +chr1 9181848 9181864 NR3C2_MA0727.1 4.997875187985819 - +chr1 9910749 9910765 NR3C2_MA0727.1 6.834286123203913 + +chr1 9910749 9910765 NR3C2_MA0727.1 6.415802064015269 - +chr1 16420919 16420935 NR3C2_MA0727.1 4.897170240234832 + +chr1 16420919 16420935 NR3C2_MA0727.1 4.007280639828679 - +chr1 16644902 16644918 NR3C2_MA0727.1 3.355110449837517 + +chr1 16644902 16644918 NR3C2_MA0727.1 2.763354198359964 - +chr1 19711125 19711141 NR3C2_MA0727.1 2.919944512078594 + +chr1 20507936 20507952 NR3C2_MA0727.1 4.536336425114587 + +chr1 20507936 20507952 NR3C2_MA0727.1 3.539593422497192 - +chr1 21783651 21783667 NR3C2_MA0727.1 5.846118539446000 + +chr1 21783651 21783667 NR3C2_MA0727.1 5.921660204813807 - +chr1 23368442 23368458 NR3C2_MA0727.1 2.878641215906068 + +chr1 23743824 23743840 NR3C2_MA0727.1 3.913496903610341 - +chr1 23959456 23959472 NR3C2_MA0727.1 3.469795106936878 + +chr1 25549933 25549949 NR3C2_MA0727.1 3.059327717934128 + +chr1 25549933 25549949 NR3C2_MA0727.1 3.722031892870814 - +chr1 26336684 26336700 NR3C2_MA0727.1 6.474277422568878 + +chr1 26336684 26336700 NR3C2_MA0727.1 6.848018266063820 - +chr1 26620439 26620455 NR3C2_MA0727.1 6.084974704326953 + +chr1 26620439 26620455 NR3C2_MA0727.1 5.412588413459002 - +chr1 26621038 26621054 NR3C2_MA0727.1 13.441477600237675 + +chr1 26621038 26621054 NR3C2_MA0727.1 13.814039551876819 - +chr1 26744109 26744125 NR3C2_MA0727.1 4.177113791321316 + +chr1 26744109 26744125 NR3C2_MA0727.1 4.486020652610157 - +chr1 27490041 27490057 NR3C2_MA0727.1 2.995400093430594 + +chr1 27490041 27490057 NR3C2_MA0727.1 3.439244415532850 - +chr1 32992858 32992874 NR3C2_MA0727.1 2.789263057633546 + +chr1 32992858 32992874 NR3C2_MA0727.1 2.518197791132700 - +chr1 33037066 33037082 NR3C2_MA0727.1 2.603212684476000 + +chr1 37901564 37901580 NR3C2_MA0727.1 10.577908745886131 + +chr1 37901564 37901580 NR3C2_MA0727.1 10.560610219730618 - +chr1 38028325 38028341 NR3C2_MA0727.1 3.284911199643799 + +chr1 38028325 38028341 NR3C2_MA0727.1 4.343868885060511 - +chr1 40385820 40385836 NR3C2_MA0727.1 11.350314195204003 + +chr1 40385820 40385836 NR3C2_MA0727.1 12.827100582021041 - +chr1 41003843 41003859 NR3C2_MA0727.1 2.985602602004507 + +chr1 41003843 41003859 NR3C2_MA0727.1 3.104811213061756 - +chr1 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NR3C2_MA0727.1 11.576664113074473 - +chr1 106996345 106996361 NR3C2_MA0727.1 4.167857916376711 + +chr1 106996345 106996361 NR3C2_MA0727.1 5.536079402620430 - +chr1 109984594 109984610 NR3C2_MA0727.1 2.595937529328658 + +chr1 111346313 111346329 NR3C2_MA0727.1 3.987411419933331 - +chr1 111620231 111620247 NR3C2_MA0727.1 13.185595731696820 + +chr1 111620231 111620247 NR3C2_MA0727.1 14.407305741779457 - +chr1 114757511 114757527 NR3C2_MA0727.1 7.393194296629975 + +chr1 114757511 114757527 NR3C2_MA0727.1 7.765575098606465 - +chr1 117001931 117001947 NR3C2_MA0727.1 3.736046370534542 - +chr1 119347922 119347938 NR3C2_MA0727.1 2.874085168665891 + +chr1 145823753 145823769 NR3C2_MA0727.1 3.206278167286626 + +chr1 145823753 145823769 NR3C2_MA0727.1 2.667601057221818 - +chr1 145845771 145845787 NR3C2_MA0727.1 5.549464484847999 + +chr1 145845771 145845787 NR3C2_MA0727.1 5.918511334227965 - +chr1 145858908 145858924 NR3C2_MA0727.1 3.771663654383933 + +chr1 145858908 145858924 NR3C2_MA0727.1 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NR4A1_MA1112.1 10.263399655638763 - +chr1 9588756 9588765 NR4A1_MA1112.1 8.718785001940892 + +chr1 9629574 9629583 NR4A1_MA1112.1 7.678668956692251 - +chr1 13749621 13749630 NR4A1_MA1112.1 10.583528892955270 - +chr1 15524934 15524943 NR4A1_MA1112.1 7.533259406577820 + +chr1 15526804 15526813 NR4A1_MA1112.1 8.200565046092015 - +chr1 15617713 15617722 NR4A1_MA1112.1 10.583528892955270 - +chr1 15966360 15966369 NR4A1_MA1112.1 7.909130443389246 - +chr1 16905378 16905387 NR4A1_MA1112.1 7.556409245246930 + +chr1 16905573 16905582 NR4A1_MA1112.1 7.705291882411489 + +chr1 17054249 17054258 NR4A1_MA1112.1 9.065537164976638 - +chr1 19485798 19485807 NR4A1_MA1112.1 8.058013080553804 + +chr1 19799452 19799461 NR4A1_MA1112.1 7.678668956692251 - +chr1 19799479 19799488 NR4A1_MA1112.1 7.844370760899572 - +chr1 20507900 20507909 NR4A1_MA1112.1 7.844370760899572 - +chr1 21345824 21345833 NR4A1_MA1112.1 8.231286850025041 - +chr1 21762405 21762414 NR4A1_MA1112.1 7.883997460812662 + +chr1 22039858 22039867 NR4A1_MA1112.1 7.556409245246930 - +chr1 23539947 23539956 NR4A1_MA1112.1 7.882507517670008 - +chr1 24415760 24415769 NR4A1_MA1112.1 8.231286850025041 - +chr1 29182265 29182274 NR4A1_MA1112.1 7.678668956692251 - +chr1 30719228 30719237 NR4A1_MA1112.1 8.365655451903633 + +chr1 30743955 30743964 NR4A1_MA1112.1 7.678668956692251 - +chr1 32394443 32394452 NR4A1_MA1112.1 10.087894092754965 - +chr1 33036684 33036693 NR4A1_MA1112.1 7.533259406577820 - +chr1 33127763 33127772 NR4A1_MA1112.1 8.198581902184541 + +chr1 33180890 33180899 NR4A1_MA1112.1 7.556409245246930 - +chr1 33181134 33181143 NR4A1_MA1112.1 7.880011569613565 - +chr1 34860127 34860136 NR4A1_MA1112.1 7.678668956692251 - +chr1 34866473 34866482 NR4A1_MA1112.1 7.880011569613565 + +chr1 36224006 36224015 NR4A1_MA1112.1 7.993253398064130 + +chr1 38475069 38475078 NR4A1_MA1112.1 10.434646255790710 - +chr1 38559493 38559502 NR4A1_MA1112.1 7.678668956692251 + +chr1 38559524 38559533 NR4A1_MA1112.1 8.599998377545699 + +chr1 40097622 40097631 NR4A1_MA1112.1 7.678668956692251 + +chr1 40532027 40532036 NR4A1_MA1112.1 7.993253398064130 + +chr1 41487416 41487425 NR4A1_MA1112.1 8.718785001940892 + +chr1 41574344 41574353 NR4A1_MA1112.1 7.883997460812662 - +chr1 42335127 42335136 NR4A1_MA1112.1 7.535296734613910 + +chr1 42658203 42658212 NR4A1_MA1112.1 8.683712980325641 - +chr1 42682720 42682729 NR4A1_MA1112.1 8.918144470954733 + +chr1 43221687 43221696 NR4A1_MA1112.1 10.438119342840839 + +chr1 44632340 44632349 NR4A1_MA1112.1 7.909130443389246 - +chr1 44684640 44684649 NR4A1_MA1112.1 8.884486806148212 + +chr1 45687592 45687601 NR4A1_MA1112.1 7.678668956692251 + +chr1 46303373 46303382 NR4A1_MA1112.1 10.434646255790710 + +chr1 50333424 50333433 NR4A1_MA1112.1 7.678668956692251 + +chr1 50724720 50724729 NR4A1_MA1112.1 7.878028425706091 + +chr1 50977113 50977122 NR4A1_MA1112.1 8.430646319038882 + +chr1 53326189 53326198 NR4A1_MA1112.1 8.230749623848407 + +chr1 53326549 53326558 NR4A1_MA1112.1 7.885980604720135 - 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NR4A1_MA1112.1 10.438119342840839 - +chr1 81598510 81598519 NR4A1_MA1112.1 7.677848700152122 - +chr1 83485992 83486001 NR4A1_MA1112.1 8.683712980325641 + +chr1 83500235 83500244 NR4A1_MA1112.1 7.876538482563437 + +chr1 84573128 84573137 NR4A1_MA1112.1 7.533259406577820 + +chr1 87132005 87132014 NR4A1_MA1112.1 7.556409245246930 + +chr1 87450090 87450099 NR4A1_MA1112.1 8.885976749290867 - +chr1 87587961 87587970 NR4A1_MA1112.1 10.236776729919525 - +chr1 88180635 88180644 NR4A1_MA1112.1 8.231286850025041 - +chr1 88868433 88868442 NR4A1_MA1112.1 10.551361171291404 - +chr1 89065041 89065050 NR4A1_MA1112.1 10.402478534126844 - +chr1 89524279 89524288 NR4A1_MA1112.1 8.109027138579719 - +chr1 89681307 89681316 NR4A1_MA1112.1 8.232732767755881 + +chr1 90509909 90509918 NR4A1_MA1112.1 8.683712980325641 + +chr1 91022289 91022298 NR4A1_MA1112.1 8.025421119727996 + +chr1 91165849 91165858 NR4A1_MA1112.1 8.365655451903633 + +chr1 91166238 91166247 NR4A1_MA1112.1 10.402478534126844 - +chr1 92538234 92538243 NR4A1_MA1112.1 8.369128538953762 + +chr1 93608481 93608490 NR4A1_MA1112.1 8.031390154834567 - +chr1 93703797 93703806 NR4A1_MA1112.1 8.395751464672999 - +chr1 93708205 93708214 NR4A1_MA1112.1 8.885976749290867 - +chr1 94542346 94542355 NR4A1_MA1112.1 8.573375451826461 + +chr1 95073334 95073343 NR4A1_MA1112.1 7.823258250266553 + +chr1 95095625 95095634 NR4A1_MA1112.1 7.876538482563437 - +chr1 97164201 97164210 NR4A1_MA1112.1 8.230749623848407 + +chr1 98662138 98662147 NR4A1_MA1112.1 8.599998377545699 - +chr1 100046982 100046991 NR4A1_MA1112.1 8.713897558082033 + +chr1 101025943 101025952 NR4A1_MA1112.1 10.114517018474203 + +chr1 101136904 101136913 NR4A1_MA1112.1 10.403968477269499 + diff --git a/demo/known_tfbs_chr1_hg38/NR4A2_MA0160.1.bed b/demo/known_tfbs_chr1_hg38/NR4A2_MA0160.1.bed new file mode 100644 index 0000000..e6d8c28 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/NR4A2_MA0160.1.bed @@ -0,0 +1,118 @@ +chr1 778545 778552 NR4A2_MA0160.1 8.268256207678810 + +chr1 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28144662 NR4A2_MA0160.1 8.268256207678812 - +chr1 29182265 29182272 NR4A2_MA0160.1 9.249080252387044 - +chr1 30719230 30719237 NR4A2_MA0160.1 7.862795266193910 + +chr1 30743955 30743962 NR4A2_MA0160.1 9.249080252387044 - +chr1 32222381 32222388 NR4A2_MA0160.1 8.268256207678812 - +chr1 32394443 32394450 NR4A2_MA0160.1 7.862795266193912 - +chr1 33036684 33036691 NR4A2_MA0160.1 8.268256207678812 - +chr1 33180890 33180897 NR4A2_MA0160.1 7.862795266193912 - +chr1 33181134 33181141 NR4A2_MA0160.1 8.268256207678812 - +chr1 34530601 34530608 NR4A2_MA0160.1 8.268256207678812 - +chr1 34860127 34860134 NR4A2_MA0160.1 9.249080252387044 - +chr1 34866475 34866482 NR4A2_MA0160.1 8.268256207678810 + +chr1 36149315 36149322 NR4A2_MA0160.1 8.268256207678810 + +chr1 36223818 36223825 NR4A2_MA0160.1 8.268256207678810 + +chr1 36224008 36224015 NR4A2_MA0160.1 9.249080252387042 + +chr1 36374258 36374265 NR4A2_MA0160.1 8.268256207678812 - +chr1 36464277 36464284 NR4A2_MA0160.1 8.268256207678812 - +chr1 37514305 37514312 NR4A2_MA0160.1 8.045113281362843 + +chr1 38475069 38475076 NR4A2_MA0160.1 7.862795266193912 - +chr1 38559495 38559502 NR4A2_MA0160.1 9.249080252387042 + +chr1 38559526 38559533 NR4A2_MA0160.1 8.268256207678810 + +chr1 39996004 39996011 NR4A2_MA0160.1 8.268256207678810 + +chr1 40097624 40097631 NR4A2_MA0160.1 9.249080252387042 + +chr1 40532029 40532036 NR4A2_MA0160.1 9.249080252387042 + +chr1 41487418 41487425 NR4A2_MA0160.1 9.249080252387042 + +chr1 41752226 41752233 NR4A2_MA0160.1 8.268256207678812 - +chr1 42658203 42658210 NR4A2_MA0160.1 8.268256207678812 - +chr1 43221689 43221696 NR4A2_MA0160.1 8.268256207678810 + +chr1 44674289 44674296 NR4A2_MA0160.1 8.268256207678810 + +chr1 44674531 44674538 NR4A2_MA0160.1 8.268256207678812 - +chr1 44684642 44684649 NR4A2_MA0160.1 7.862795266193910 + +chr1 45012146 45012153 NR4A2_MA0160.1 8.045113281362845 - +chr1 45394401 45394408 NR4A2_MA0160.1 8.045113281362845 - +chr1 45687594 45687601 NR4A2_MA0160.1 9.249080252387042 + 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- +chr1 60281128 60281135 NR4A2_MA0160.1 9.249080252387044 - +chr1 60978566 60978573 NR4A2_MA0160.1 7.862795266193912 - +chr1 61332871 61332878 NR4A2_MA0160.1 8.268256207678812 - +chr1 61725580 61725587 NR4A2_MA0160.1 7.862795266193912 - +chr1 61783115 61783122 NR4A2_MA0160.1 8.268256207678810 + +chr1 63593999 63594006 NR4A2_MA0160.1 9.249080252387042 + +chr1 64883117 64883124 NR4A2_MA0160.1 9.249080252387042 + +chr1 64957055 64957062 NR4A2_MA0160.1 9.249080252387042 + +chr1 64957065 64957072 NR4A2_MA0160.1 8.268256207678812 - +chr1 65812202 65812209 NR4A2_MA0160.1 7.862795266193912 - +chr1 66336113 66336120 NR4A2_MA0160.1 7.862795266193912 - +chr1 66396196 66396203 NR4A2_MA0160.1 9.249080252387042 + +chr1 70410968 70410975 NR4A2_MA0160.1 8.268256207678810 + +chr1 72433875 72433882 NR4A2_MA0160.1 8.268256207678810 + +chr1 76294717 76294724 NR4A2_MA0160.1 8.268256207678810 + +chr1 76939317 76939324 NR4A2_MA0160.1 8.268256207678810 + +chr1 77219575 77219582 NR4A2_MA0160.1 8.268256207678812 - +chr1 79260360 79260367 NR4A2_MA0160.1 8.268256207678812 - +chr1 81549406 81549413 NR4A2_MA0160.1 8.268256207678812 - +chr1 81549693 81549700 NR4A2_MA0160.1 8.045113281362843 + +chr1 83485994 83486001 NR4A2_MA0160.1 8.268256207678810 + +chr1 83500237 83500244 NR4A2_MA0160.1 7.862795266193910 + +chr1 84573130 84573137 NR4A2_MA0160.1 8.268256207678810 + +chr1 86395698 86395705 NR4A2_MA0160.1 8.268256207678810 + +chr1 86755681 86755688 NR4A2_MA0160.1 8.045113281362843 + +chr1 86915362 86915369 NR4A2_MA0160.1 8.268256207678810 + +chr1 87132007 87132014 NR4A2_MA0160.1 7.862795266193910 + +chr1 87449359 87449366 NR4A2_MA0160.1 8.268256207678812 - +chr1 87587961 87587968 NR4A2_MA0160.1 9.249080252387044 - +chr1 88868433 88868440 NR4A2_MA0160.1 9.249080252387044 - +chr1 89065041 89065048 NR4A2_MA0160.1 7.862795266193912 - +chr1 89694520 89694527 NR4A2_MA0160.1 8.045113281362845 - diff --git a/demo/known_tfbs_chr1_hg38/NR4A2_RXRA_MA1147.1.bed b/demo/known_tfbs_chr1_hg38/NR4A2_RXRA_MA1147.1.bed new file mode 100644 index 0000000..2085283 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/NR4A2_RXRA_MA1147.1.bed @@ -0,0 +1,110 @@ +chr1 827472 827486 NR4A2_RXRA_MA1147.1 7.970035440332734 + +chr1 1019917 1019931 NR4A2_RXRA_MA1147.1 7.567362124229253 - +chr1 1033258 1033272 NR4A2_RXRA_MA1147.1 6.824116903427210 + +chr1 1157854 1157868 NR4A2_RXRA_MA1147.1 8.571509618972248 - +chr1 1778697 1778711 NR4A2_RXRA_MA1147.1 7.198977731975674 - +chr1 3772323 3772337 NR4A2_RXRA_MA1147.1 6.888655512934721 + +chr1 3772323 3772337 NR4A2_RXRA_MA1147.1 6.788562780993281 - +chr1 3900375 3900389 NR4A2_RXRA_MA1147.1 7.467925113243238 - +chr1 6199596 6199610 NR4A2_RXRA_MA1147.1 7.068271873383340 - +chr1 6235405 6235419 NR4A2_RXRA_MA1147.1 8.998741279647732 + +chr1 9163770 9163784 NR4A2_RXRA_MA1147.1 9.307234824021172 - +chr1 9911007 9911021 NR4A2_RXRA_MA1147.1 6.898157268581407 + +chr1 9943351 9943365 NR4A2_RXRA_MA1147.1 8.069865618711088 - +chr1 11680789 11680803 NR4A2_RXRA_MA1147.1 7.545609281051656 - +chr1 12079597 12079611 NR4A2_RXRA_MA1147.1 6.815304171742723 - +chr1 13700491 13700505 NR4A2_RXRA_MA1147.1 7.855044811342814 + +chr1 13700491 13700505 NR4A2_RXRA_MA1147.1 7.385728466195019 - +chr1 14599583 14599597 NR4A2_RXRA_MA1147.1 6.886595141673705 - +chr1 15684571 15684585 NR4A2_RXRA_MA1147.1 8.030864249902669 - +chr1 16421082 16421096 NR4A2_RXRA_MA1147.1 8.194228762374241 - +chr1 17437923 17437937 NR4A2_RXRA_MA1147.1 9.013604795250510 + +chr1 19312312 19312326 NR4A2_RXRA_MA1147.1 7.915525656590744 + +chr1 19485239 19485253 NR4A2_RXRA_MA1147.1 7.611310442897032 - +chr1 19485541 19485555 NR4A2_RXRA_MA1147.1 7.600012365107369 - +chr1 21345639 21345653 NR4A2_RXRA_MA1147.1 6.807958360158455 + +chr1 23743714 23743728 NR4A2_RXRA_MA1147.1 9.075008204404616 + +chr1 26112046 26112060 NR4A2_RXRA_MA1147.1 8.149785332381693 + +chr1 26112046 26112060 NR4A2_RXRA_MA1147.1 7.244321141763427 - +chr1 26743976 26743990 NR4A2_RXRA_MA1147.1 9.812464521349577 + +chr1 26743976 26743990 NR4A2_RXRA_MA1147.1 7.106001881033809 - +chr1 26921650 26921664 NR4A2_RXRA_MA1147.1 8.413081090810779 - +chr1 31549688 31549702 NR4A2_RXRA_MA1147.1 8.216808669525408 + +chr1 31549688 31549702 NR4A2_RXRA_MA1147.1 8.434639025572768 - +chr1 31938500 31938514 NR4A2_RXRA_MA1147.1 8.279960327778996 + +chr1 33036886 33036900 NR4A2_RXRA_MA1147.1 8.704909066579733 - +chr1 33181049 33181063 NR4A2_RXRA_MA1147.1 6.958777907713151 + +chr1 34859625 34859639 NR4A2_RXRA_MA1147.1 8.431506200552628 - +chr1 35268787 35268801 NR4A2_RXRA_MA1147.1 11.134642986700028 + +chr1 35268787 35268801 NR4A2_RXRA_MA1147.1 8.017314405073860 - +chr1 35930774 35930788 NR4A2_RXRA_MA1147.1 8.863332717758556 + +chr1 38873105 38873119 NR4A2_RXRA_MA1147.1 7.900162776208462 - +chr1 39215390 39215404 NR4A2_RXRA_MA1147.1 8.306803769914831 - +chr1 39408758 39408772 NR4A2_RXRA_MA1147.1 6.735273563431562 + +chr1 39799683 39799697 NR4A2_RXRA_MA1147.1 10.332966743004251 + +chr1 39799683 39799697 NR4A2_RXRA_MA1147.1 8.592844328288509 - +chr1 39799869 39799883 NR4A2_RXRA_MA1147.1 7.003894538917980 + +chr1 40161503 40161517 NR4A2_RXRA_MA1147.1 8.495388908878832 + +chr1 40161503 40161517 NR4A2_RXRA_MA1147.1 11.213748497681838 - +chr1 40665584 40665598 NR4A2_RXRA_MA1147.1 7.895604925452999 - +chr1 40692254 40692268 NR4A2_RXRA_MA1147.1 11.272160668952568 + +chr1 40692254 40692268 NR4A2_RXRA_MA1147.1 10.542509956249118 - +chr1 41361037 41361051 NR4A2_RXRA_MA1147.1 7.305808752524413 + +chr1 41361037 41361051 NR4A2_RXRA_MA1147.1 6.700923924827954 - +chr1 42456454 42456468 NR4A2_RXRA_MA1147.1 6.956948441942515 + +chr1 42658196 42658210 NR4A2_RXRA_MA1147.1 7.146760787713465 + +chr1 44684677 44684691 NR4A2_RXRA_MA1147.1 6.796995102771962 + +chr1 44684677 44684691 NR4A2_RXRA_MA1147.1 7.805063754028591 - +chr1 48472026 48472040 NR4A2_RXRA_MA1147.1 6.957122082902607 + +chr1 50333408 50333422 NR4A2_RXRA_MA1147.1 7.124206453277997 + +chr1 50333408 50333422 NR4A2_RXRA_MA1147.1 8.622139295010252 - +chr1 52403849 52403863 NR4A2_RXRA_MA1147.1 6.798501662056800 + +chr1 53326297 53326311 NR4A2_RXRA_MA1147.1 7.680793125729890 + +chr1 54376624 54376638 NR4A2_RXRA_MA1147.1 7.138239497527862 + +chr1 58783551 58783565 NR4A2_RXRA_MA1147.1 8.437671976279132 - +chr1 59013581 59013595 NR4A2_RXRA_MA1147.1 7.455731829026041 - +chr1 59697250 59697264 NR4A2_RXRA_MA1147.1 6.906314895730645 + +chr1 59814590 59814604 NR4A2_RXRA_MA1147.1 8.318092234187734 - +chr1 60978559 60978573 NR4A2_RXRA_MA1147.1 7.551822190977211 - +chr1 62688633 62688647 NR4A2_RXRA_MA1147.1 7.351009352528147 + +chr1 63125314 63125328 NR4A2_RXRA_MA1147.1 8.939922441348013 + +chr1 63563875 63563889 NR4A2_RXRA_MA1147.1 9.812024200927308 + +chr1 63563875 63563889 NR4A2_RXRA_MA1147.1 8.358489441120762 - +chr1 65687905 65687919 NR4A2_RXRA_MA1147.1 7.279962411772103 - +chr1 65895320 65895334 NR4A2_RXRA_MA1147.1 7.031462742421836 + +chr1 65895320 65895334 NR4A2_RXRA_MA1147.1 7.923262394803563 - +chr1 68443251 68443265 NR4A2_RXRA_MA1147.1 7.015772985965977 + +chr1 75796800 75796814 NR4A2_RXRA_MA1147.1 7.339968286991912 + +chr1 75796800 75796814 NR4A2_RXRA_MA1147.1 10.055018340494383 - +chr1 75981416 75981430 NR4A2_RXRA_MA1147.1 7.821483572375866 + +chr1 77219568 77219582 NR4A2_RXRA_MA1147.1 9.332900084595028 + +chr1 78277529 78277543 NR4A2_RXRA_MA1147.1 7.823003524206380 + +chr1 79694707 79694721 NR4A2_RXRA_MA1147.1 7.347748195043001 + +chr1 84599768 84599782 NR4A2_RXRA_MA1147.1 6.790372995662795 + +chr1 84997427 84997441 NR4A2_RXRA_MA1147.1 8.682737393894090 + +chr1 84997427 84997441 NR4A2_RXRA_MA1147.1 8.401108277526538 - +chr1 85259341 85259355 NR4A2_RXRA_MA1147.1 6.988847519103742 + +chr1 85259341 85259355 NR4A2_RXRA_MA1147.1 7.603539451469484 - +chr1 86914193 86914207 NR4A2_RXRA_MA1147.1 7.713844473066697 + +chr1 87045946 87045960 NR4A2_RXRA_MA1147.1 7.253236315988785 - +chr1 87052467 87052481 NR4A2_RXRA_MA1147.1 7.801493091417143 - +chr1 87132185 87132199 NR4A2_RXRA_MA1147.1 7.115409102653369 + +chr1 88992391 88992405 NR4A2_RXRA_MA1147.1 9.149345890899076 + +chr1 89821819 89821833 NR4A2_RXRA_MA1147.1 6.902924454786275 - +chr1 89995655 89995669 NR4A2_RXRA_MA1147.1 6.960834930397824 + +chr1 89995655 89995669 NR4A2_RXRA_MA1147.1 6.979859922295381 - +chr1 90509676 90509690 NR4A2_RXRA_MA1147.1 7.746639214362872 + +chr1 92483704 92483718 NR4A2_RXRA_MA1147.1 6.879231817749520 + +chr1 93079529 93079543 NR4A2_RXRA_MA1147.1 7.076930256725877 - +chr1 93180681 93180695 NR4A2_RXRA_MA1147.1 7.185786322023688 - +chr1 93346258 93346272 NR4A2_RXRA_MA1147.1 8.171755197922357 + +chr1 93591930 93591944 NR4A2_RXRA_MA1147.1 7.195537879209660 + +chr1 93591930 93591944 NR4A2_RXRA_MA1147.1 8.058047243771677 - +chr1 93693517 93693531 NR4A2_RXRA_MA1147.1 7.109276185246621 - +chr1 93847379 93847393 NR4A2_RXRA_MA1147.1 7.531353445652528 + +chr1 93847379 93847393 NR4A2_RXRA_MA1147.1 8.407300716151521 - +chr1 93878829 93878843 NR4A2_RXRA_MA1147.1 9.110362568762744 - +chr1 99969598 99969612 NR4A2_RXRA_MA1147.1 7.130858465236575 - +chr1 100038452 100038466 NR4A2_RXRA_MA1147.1 7.057952989179268 - +chr1 100351503 100351517 NR4A2_RXRA_MA1147.1 8.598682295524091 - +chr1 100895189 100895203 NR4A2_RXRA_MA1147.1 7.867075653553719 + diff --git a/demo/known_tfbs_chr1_hg38/NRF1_MA0506.1.bed b/demo/known_tfbs_chr1_hg38/NRF1_MA0506.1.bed new file mode 100644 index 0000000..27472a4 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/NRF1_MA0506.1.bed @@ -0,0 +1,1889 @@ +chr1 181496 181506 NRF1_MA0506.1 11.596958588897404 - +chr1 181497 181507 NRF1_MA0506.1 10.471825988615247 + +chr1 1019530 1019540 NRF1_MA0506.1 6.876233397873544 + +chr1 1019797 1019807 NRF1_MA0506.1 7.170230372549975 - +chr1 1019908 1019918 NRF1_MA0506.1 8.174698446929060 + +chr1 1033337 1033347 NRF1_MA0506.1 7.715127989105404 + +chr1 1033374 1033384 NRF1_MA0506.1 8.224110874103930 - +chr1 1116034 1116044 NRF1_MA0506.1 7.290088484687680 + +chr1 1157971 1157981 NRF1_MA0506.1 10.118352706552971 - +chr1 1232027 1232037 NRF1_MA0506.1 7.850457787503450 + +chr1 1232173 1232183 NRF1_MA0506.1 7.213936235273787 + +chr1 1232199 1232209 NRF1_MA0506.1 11.934960184699341 - +chr1 1232200 1232210 NRF1_MA0506.1 10.201666281541922 + +chr1 1232226 1232236 NRF1_MA0506.1 9.444964477576530 - +chr1 1232227 1232237 NRF1_MA0506.1 12.623820099936124 + +chr1 1232267 1232277 NRF1_MA0506.1 9.381700791256698 - +chr1 1232268 1232278 NRF1_MA0506.1 8.963000583093240 + +chr1 1273679 1273689 NRF1_MA0506.1 7.091330751626433 - +chr1 1274000 1274010 NRF1_MA0506.1 10.840616899085040 + +chr1 1307991 1308001 NRF1_MA0506.1 7.779377953089397 + +chr1 1308043 1308053 NRF1_MA0506.1 7.779377953089397 + +chr1 1308203 1308213 NRF1_MA0506.1 7.129944456569344 + +chr1 1308520 1308530 NRF1_MA0506.1 12.269369855756661 - +chr1 1308521 1308531 NRF1_MA0506.1 10.471825988615247 + +chr1 1308582 1308592 NRF1_MA0506.1 7.090518037852617 + +chr1 1308583 1308593 NRF1_MA0506.1 9.365252142879172 - +chr1 1308584 1308594 NRF1_MA0506.1 9.719702387058634 + 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6.932683699412613 + +chr1 1512151 1512161 NRF1_MA0506.1 9.444964477576530 - +chr1 1512152 1512162 NRF1_MA0506.1 12.623820099936124 + +chr1 1512335 1512345 NRF1_MA0506.1 8.133828197268860 + +chr1 1574671 1574681 NRF1_MA0506.1 7.377126393303467 - +chr1 1574803 1574813 NRF1_MA0506.1 7.146393104946870 + +chr1 1574898 1574908 NRF1_MA0506.1 10.324271765189277 - +chr1 1574899 1574909 NRF1_MA0506.1 9.651860498330020 + +chr1 1615333 1615343 NRF1_MA0506.1 12.623820099936124 - +chr1 1615334 1615344 NRF1_MA0506.1 9.444964477576530 + +chr1 1630444 1630454 NRF1_MA0506.1 11.390062568143911 - +chr1 1630445 1630455 NRF1_MA0506.1 11.390062568143911 + +chr1 1630475 1630485 NRF1_MA0506.1 9.091491195514251 + +chr1 1659248 1659258 NRF1_MA0506.1 10.471825988615247 - +chr1 1659249 1659259 NRF1_MA0506.1 12.269369855756661 + +chr1 1659313 1659323 NRF1_MA0506.1 7.043407853967059 - +chr1 1659314 1659324 NRF1_MA0506.1 8.877781789979995 + +chr1 1692763 1692773 NRF1_MA0506.1 7.614329144113292 + +chr1 1724559 1724569 NRF1_MA0506.1 10.471825988615247 - +chr1 1724560 1724570 NRF1_MA0506.1 12.269369855756661 + +chr1 1724624 1724634 NRF1_MA0506.1 7.043407853967059 - +chr1 1724625 1724635 NRF1_MA0506.1 8.877781789979995 + +chr1 1746038 1746048 NRF1_MA0506.1 7.614329144113292 + +chr1 1778428 1778438 NRF1_MA0506.1 9.651860498330020 - +chr1 1778429 1778439 NRF1_MA0506.1 9.651860498330020 + +chr1 1778458 1778468 NRF1_MA0506.1 7.903094908912262 + +chr1 1778470 1778480 NRF1_MA0506.1 12.623820099936124 - +chr1 1778471 1778481 NRF1_MA0506.1 10.471825988615247 + +chr1 1778476 1778486 NRF1_MA0506.1 8.758525355400405 - +chr1 1778488 1778498 NRF1_MA0506.1 10.261071124176597 + +chr1 1778558 1778568 NRF1_MA0506.1 7.779377953089399 - +chr1 1890747 1890757 NRF1_MA0506.1 6.876233397873544 - +chr1 1891141 1891151 NRF1_MA0506.1 7.505499086689362 - +chr1 1891163 1891173 NRF1_MA0506.1 9.075042547136727 - +chr1 1891174 1891184 NRF1_MA0506.1 7.748790346012681 + +chr1 1919416 1919426 NRF1_MA0506.1 7.551699607244674 - +chr1 2050203 2050213 NRF1_MA0506.1 8.522990698428679 - +chr1 2050204 2050214 NRF1_MA0506.1 7.398198945518375 + +chr1 2050256 2050266 NRF1_MA0506.1 7.106966686230141 + +chr1 2133473 2133483 NRF1_MA0506.1 6.876233397873544 + +chr1 2133510 2133520 NRF1_MA0506.1 6.876233397873544 + +chr1 2133659 2133669 NRF1_MA0506.1 7.845062432469889 + +chr1 2227687 2227697 NRF1_MA0506.1 7.106966686230141 + +chr1 2227957 2227967 NRF1_MA0506.1 7.146393104946870 - +chr1 2391624 2391634 NRF1_MA0506.1 8.548809246105604 + +chr1 2391680 2391690 NRF1_MA0506.1 7.397858098146521 - +chr1 2391681 2391691 NRF1_MA0506.1 9.550193056839252 + +chr1 2391746 2391756 NRF1_MA0506.1 8.240559522481455 + +chr1 2412780 2412790 NRF1_MA0506.1 8.402631280277472 - +chr1 2413044 2413054 NRF1_MA0506.1 8.548809246105606 - +chr1 2526267 2526277 NRF1_MA0506.1 8.548809246105604 + +chr1 2526315 2526325 NRF1_MA0506.1 7.129944456569344 + +chr1 2526361 2526371 NRF1_MA0506.1 7.485838531692281 - +chr1 2526408 2526418 NRF1_MA0506.1 7.377126393303467 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10.201666281541922 - +chr1 3857226 3857236 NRF1_MA0506.1 11.580509940519878 + +chr1 3857256 3857266 NRF1_MA0506.1 10.117375744435785 - +chr1 3857257 3857267 NRF1_MA0506.1 12.623820099936124 + +chr1 3857403 3857413 NRF1_MA0506.1 10.822417389109553 + +chr1 3857692 3857702 NRF1_MA0506.1 7.730281369169551 - +chr1 5992203 5992213 NRF1_MA0506.1 8.173254615985588 + +chr1 5992262 5992272 NRF1_MA0506.1 7.232127472996480 + +chr1 6026583 6026593 NRF1_MA0506.1 7.282272336593461 + +chr1 6206450 6206460 NRF1_MA0506.1 9.381700791256698 - +chr1 6206451 6206461 NRF1_MA0506.1 8.963000583093240 + +chr1 6235605 6235615 NRF1_MA0506.1 7.505499086689362 + +chr1 6235887 6235897 NRF1_MA0506.1 7.521947735066886 + +chr1 6235935 6235945 NRF1_MA0506.1 7.502287180069804 + +chr1 6235968 6235978 NRF1_MA0506.1 7.172651165610633 + +chr1 6235973 6235983 NRF1_MA0506.1 10.471825988615247 - +chr1 6235974 6235984 NRF1_MA0506.1 12.623820099936124 + +chr1 6236023 6236033 NRF1_MA0506.1 7.045828647027717 + +chr1 6261036 6261046 NRF1_MA0506.1 7.502287180069804 - +chr1 6393116 6393126 NRF1_MA0506.1 8.174698446929060 + +chr1 6393441 6393451 NRF1_MA0506.1 6.939497084193378 - +chr1 6393497 6393507 NRF1_MA0506.1 7.146393104946870 + +chr1 6393551 6393561 NRF1_MA0506.1 8.252709347289382 - +chr1 6393626 6393636 NRF1_MA0506.1 7.250303874720551 - +chr1 6393627 6393637 NRF1_MA0506.1 7.605094966271869 + +chr1 6393783 6393793 NRF1_MA0506.1 7.106966686230141 + +chr1 6490027 6490037 NRF1_MA0506.1 7.587632214447377 - +chr1 6490612 6490622 NRF1_MA0506.1 10.054112058115953 - +chr1 6554597 6554607 NRF1_MA0506.1 7.377126393303467 + +chr1 6602583 6602593 NRF1_MA0506.1 8.758525355400405 - +chr1 6602607 6602617 NRF1_MA0506.1 7.045828647027718 - +chr1 6602683 6602693 NRF1_MA0506.1 7.548644664732800 + +chr1 6603023 6603033 NRF1_MA0506.1 6.876233397873544 + +chr1 6603291 6603301 NRF1_MA0506.1 8.173254615985588 + +chr1 6613474 6613484 NRF1_MA0506.1 8.464518708999467 + +chr1 6613974 6613984 NRF1_MA0506.1 10.474246781675905 - +chr1 6614082 6614092 NRF1_MA0506.1 8.529148691108523 - +chr1 6614263 6614273 NRF1_MA0506.1 7.129944456569344 - +chr1 6625439 6625449 NRF1_MA0506.1 7.502287180069804 - +chr1 6701734 6701744 NRF1_MA0506.1 7.001239238040805 - +chr1 6701885 6701895 NRF1_MA0506.1 7.172651165610633 + +chr1 6701940 6701950 NRF1_MA0506.1 10.471825988615247 - +chr1 6701953 6701963 NRF1_MA0506.1 7.840288775871743 - +chr1 6701956 6701966 NRF1_MA0506.1 6.943776528200463 + +chr1 6784679 6784689 NRF1_MA0506.1 9.322224483870851 - +chr1 6785441 6785451 NRF1_MA0506.1 9.430936622259662 + +chr1 6785493 6785503 NRF1_MA0506.1 6.833087819830106 - +chr1 6785673 6785683 NRF1_MA0506.1 7.485838531692279 + +chr1 7784103 7784113 NRF1_MA0506.1 8.194359001926141 + +chr1 7954196 7954206 NRF1_MA0506.1 7.250303874720551 + +chr1 7954274 7954284 NRF1_MA0506.1 7.255575406927546 - +chr1 7961655 7961665 NRF1_MA0506.1 7.407667977330364 + +chr1 7961692 7961702 NRF1_MA0506.1 8.045813326535889 - +chr1 7961804 7961814 NRF1_MA0506.1 7.485838531692279 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6.876233397873544 + +chr1 9181457 9181467 NRF1_MA0506.1 6.891438165193345 - +chr1 9234738 9234748 NRF1_MA0506.1 7.485838531692281 - +chr1 9235046 9235056 NRF1_MA0506.1 8.529148691108523 - +chr1 9428885 9428895 NRF1_MA0506.1 11.390062568143911 - +chr1 9428886 9428896 NRF1_MA0506.1 12.416924079182630 + +chr1 9539319 9539329 NRF1_MA0506.1 6.831290524635014 - +chr1 9539501 9539511 NRF1_MA0506.1 7.377126393303467 - +chr1 9539553 9539563 NRF1_MA0506.1 8.194359001926141 + +chr1 9539557 9539567 NRF1_MA0506.1 7.444968282032080 + +chr1 9539678 9539688 NRF1_MA0506.1 8.464518708999467 + +chr1 9539858 9539868 NRF1_MA0506.1 9.651860498330020 - +chr1 9588620 9588630 NRF1_MA0506.1 6.943776528200464 - +chr1 9588731 9588741 NRF1_MA0506.1 7.129944456569344 - +chr1 9588838 9588848 NRF1_MA0506.1 7.489168357346952 + +chr1 9588846 9588856 NRF1_MA0506.1 7.489168357346952 + +chr1 9588854 9588864 NRF1_MA0506.1 7.489168357346952 + +chr1 9589146 9589156 NRF1_MA0506.1 7.360677744925941 + +chr1 9589148 9589158 NRF1_MA0506.1 7.215678824618955 + +chr1 9589172 9589182 NRF1_MA0506.1 8.174698446929060 - +chr1 9589278 9589288 NRF1_MA0506.1 6.943776528200464 - +chr1 9687781 9687791 NRF1_MA0506.1 7.193382870453688 - +chr1 9689235 9689245 NRF1_MA0506.1 7.446022779303514 + +chr1 9689439 9689449 NRF1_MA0506.1 8.174698446929060 - +chr1 9824054 9824064 NRF1_MA0506.1 8.692840876019915 - +chr1 9824055 9824065 NRF1_MA0506.1 9.365252142879172 + +chr1 9824056 9824066 NRF1_MA0506.1 7.090518037852617 - +chr1 9824081 9824091 NRF1_MA0506.1 7.129944456569344 + +chr1 9824118 9824128 NRF1_MA0506.1 7.505499086689362 + +chr1 9824141 9824151 NRF1_MA0506.1 7.215678824618955 + +chr1 9824142 9824152 NRF1_MA0506.1 6.859784749496020 - +chr1 9824177 9824187 NRF1_MA0506.1 6.833087819830106 + +chr1 9824179 9824189 NRF1_MA0506.1 6.859784749496020 + +chr1 9824180 9824190 NRF1_MA0506.1 7.215678824618955 - +chr1 9824182 9824192 NRF1_MA0506.1 7.360677744925941 - +chr1 9910034 9910044 NRF1_MA0506.1 7.213936235273787 + +chr1 9910050 9910060 NRF1_MA0506.1 7.129944456569344 + +chr1 10032820 10032830 NRF1_MA0506.1 10.119796537496443 + +chr1 10210594 10210604 NRF1_MA0506.1 8.963000583093240 - +chr1 10210595 10210605 NRF1_MA0506.1 10.054112058115951 + +chr1 10210815 10210825 NRF1_MA0506.1 7.485838531692281 - +chr1 10210818 10210828 NRF1_MA0506.1 6.943776528200463 + +chr1 10398698 10398708 NRF1_MA0506.1 7.598497590405615 + +chr1 10398829 10398839 NRF1_MA0506.1 7.091330751626433 - +chr1 10399454 10399464 NRF1_MA0506.1 7.489168357346952 + +chr1 10430411 10430421 NRF1_MA0506.1 7.779377953089397 + +chr1 10430687 10430697 NRF1_MA0506.1 10.474246781675905 + +chr1 10430692 10430702 NRF1_MA0506.1 10.615521368356060 - +chr1 10694027 10694037 NRF1_MA0506.1 7.548644664732800 - +chr1 10694094 10694104 NRF1_MA0506.1 6.900070665476649 + +chr1 10694099 10694109 NRF1_MA0506.1 7.360677744925941 - +chr1 10694276 10694286 NRF1_MA0506.1 7.106966686230141 + +chr1 10694467 10694477 NRF1_MA0506.1 7.548644664732800 - +chr1 11059747 11059757 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7.568386479453250 + +chr1 17437796 17437806 NRF1_MA0506.1 6.879526564216468 + +chr1 17437977 17437987 NRF1_MA0506.1 6.859784749496020 - +chr1 17438000 17438010 NRF1_MA0506.1 7.779377953089397 + +chr1 17438102 17438112 NRF1_MA0506.1 7.818804371806126 + +chr1 17438311 17438321 NRF1_MA0506.1 7.308287994663170 + +chr1 18902422 18902432 NRF1_MA0506.1 6.833087819830106 - +chr1 18902502 18902512 NRF1_MA0506.1 8.963000583093240 + +chr1 18955820 18955830 NRF1_MA0506.1 7.797763143745132 + +chr1 18955858 18955868 NRF1_MA0506.1 7.489168357346954 - +chr1 18956336 18956346 NRF1_MA0506.1 7.845062432469889 + +chr1 18956424 18956434 NRF1_MA0506.1 7.521947735066887 - +chr1 19210441 19210451 NRF1_MA0506.1 8.612072932425438 - +chr1 19210495 19210505 NRF1_MA0506.1 10.409616799566850 + +chr1 19251942 19251952 NRF1_MA0506.1 7.840288775871741 + +chr1 19312131 19312141 NRF1_MA0506.1 9.444964477576530 - +chr1 19312132 19312142 NRF1_MA0506.1 12.269369855756661 + +chr1 19485263 19485273 NRF1_MA0506.1 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7.521947735066886 + +chr1 20787215 20787225 NRF1_MA0506.1 7.161597872266669 - +chr1 20787339 20787349 NRF1_MA0506.1 7.485838531692281 - +chr1 20787419 20787429 NRF1_MA0506.1 6.967872698773329 + +chr1 21345629 21345639 NRF1_MA0506.1 9.635411849952495 - +chr1 21345630 21345640 NRF1_MA0506.1 10.054112058115951 + +chr1 21783115 21783125 NRF1_MA0506.1 7.548644664732800 + +chr1 21783119 21783129 NRF1_MA0506.1 7.106966686230141 + +chr1 21783180 21783190 NRF1_MA0506.1 7.360677744925941 - +chr1 21783221 21783231 NRF1_MA0506.1 12.062473835003168 + +chr1 22052531 22052541 NRF1_MA0506.1 7.818804371806126 + +chr1 22052540 22052550 NRF1_MA0506.1 9.847216037362459 - +chr1 22052541 22052551 NRF1_MA0506.1 11.580509940519878 + +chr1 22052904 22052914 NRF1_MA0506.1 7.548644664732800 - +chr1 22053234 22053244 NRF1_MA0506.1 7.502287180069804 - +chr1 22452189 22452199 NRF1_MA0506.1 7.792107442140211 - +chr1 23019468 23019478 NRF1_MA0506.1 7.373402059676633 - +chr1 23019931 23019941 NRF1_MA0506.1 7.539021283019768 - +chr1 23168639 23168649 NRF1_MA0506.1 7.715127989105404 - +chr1 23344052 23344062 NRF1_MA0506.1 7.779377953089399 - +chr1 23344191 23344201 NRF1_MA0506.1 7.818804371806126 - +chr1 23344282 23344292 NRF1_MA0506.1 8.692840876019915 - +chr1 23344283 23344293 NRF1_MA0506.1 8.692840876019915 + +chr1 23368487 23368497 NRF1_MA0506.1 7.397858098146521 - +chr1 23368488 23368498 NRF1_MA0506.1 8.877781789979995 + +chr1 23368905 23368915 NRF1_MA0506.1 8.174698446929060 + +chr1 23368958 23368968 NRF1_MA0506.1 7.213936235273787 - +chr1 23559501 23559511 NRF1_MA0506.1 9.720756884330068 - +chr1 23743897 23743907 NRF1_MA0506.1 7.215289490946915 + +chr1 23778364 23778374 NRF1_MA0506.1 12.062473835003168 - +chr1 23778365 23778375 NRF1_MA0506.1 11.390062568143911 + +chr1 23778375 23778385 NRF1_MA0506.1 7.009461007580954 - +chr1 23778495 23778505 NRF1_MA0506.1 6.920667860261381 - +chr1 23800913 23800923 NRF1_MA0506.1 6.859784749496020 + +chr1 23800914 23800924 NRF1_MA0506.1 7.215678824618955 - +chr1 23800916 23800926 NRF1_MA0506.1 7.360677744925941 - +chr1 23800963 23800973 NRF1_MA0506.1 7.377126393303467 + +chr1 23868319 23868329 NRF1_MA0506.1 9.195401965287935 - +chr1 23959514 23959524 NRF1_MA0506.1 8.194359001926141 + +chr1 23980141 23980151 NRF1_MA0506.1 7.170230372549975 - +chr1 23980462 23980472 NRF1_MA0506.1 10.349085994909569 + +chr1 23980467 23980477 NRF1_MA0506.1 10.142189974156075 - +chr1 23980484 23980494 NRF1_MA0506.1 10.908098673660621 - +chr1 23980485 23980495 NRF1_MA0506.1 9.174804770503204 + +chr1 23980852 23980862 NRF1_MA0506.1 7.730281369169551 + +chr1 24642862 24642872 NRF1_MA0506.1 7.797763143745132 - +chr1 24643145 24643155 NRF1_MA0506.1 10.133557473872770 - +chr1 24643175 24643185 NRF1_MA0506.1 8.257622688245975 + +chr1 24643204 24643214 NRF1_MA0506.1 6.876233397873544 - +chr1 24643273 24643283 NRF1_MA0506.1 8.174698446929060 + +chr1 24643472 24643482 NRF1_MA0506.1 8.818968953178929 + +chr1 24643521 24643531 NRF1_MA0506.1 9.513484570020633 + +chr1 24745020 24745030 NRF1_MA0506.1 12.269369855756661 - +chr1 24929748 24929758 NRF1_MA0506.1 9.994635750730106 + +chr1 24929889 24929899 NRF1_MA0506.1 7.489168357346954 - +chr1 24929929 24929939 NRF1_MA0506.1 9.381700791256698 - +chr1 24929930 24929940 NRF1_MA0506.1 8.963000583093240 + +chr1 24930287 24930297 NRF1_MA0506.1 7.779377953089397 + +chr1 25232639 25232649 NRF1_MA0506.1 10.474246781675905 - +chr1 25239757 25239767 NRF1_MA0506.1 10.471825988615247 - +chr1 25239758 25239768 NRF1_MA0506.1 12.623820099936124 + +chr1 25247127 25247137 NRF1_MA0506.1 7.106966686230143 - +chr1 25247442 25247452 NRF1_MA0506.1 7.992616655895859 + +chr1 25247503 25247513 NRF1_MA0506.1 11.390062568143911 - +chr1 25247504 25247514 NRF1_MA0506.1 12.416924079182630 + +chr1 25247616 25247626 NRF1_MA0506.1 12.416924079182630 - +chr1 25247617 25247627 NRF1_MA0506.1 12.062473835003168 + +chr1 25338230 25338240 NRF1_MA0506.1 9.557006441620015 - +chr1 25338236 25338246 NRF1_MA0506.1 9.267421033520174 - +chr1 25338304 25338314 NRF1_MA0506.1 9.787739729976613 + +chr1 25338402 25338412 NRF1_MA0506.1 7.818804371806126 - +chr1 25431064 25431074 NRF1_MA0506.1 8.174698446929060 + +chr1 25543719 25543729 NRF1_MA0506.1 6.876233397873544 - +chr1 25549982 25549992 NRF1_MA0506.1 10.118352706552971 - +chr1 25549988 25549998 NRF1_MA0506.1 7.246942906644242 - +chr1 25616258 25616268 NRF1_MA0506.1 6.941917877254036 - +chr1 25616720 25616730 NRF1_MA0506.1 6.891438165193345 - +chr1 25616862 25616872 NRF1_MA0506.1 9.737205532707595 - +chr1 25819882 25819892 NRF1_MA0506.1 7.571183566069852 + +chr1 25819907 25819917 NRF1_MA0506.1 7.400278891207180 - +chr1 25820378 25820388 NRF1_MA0506.1 7.843618601526416 - +chr1 25859385 25859395 NRF1_MA0506.1 8.877319298542169 + +chr1 25859390 25859400 NRF1_MA0506.1 9.737205532707595 - +chr1 25905616 25905626 NRF1_MA0506.1 8.194359001926141 + +chr1 25905692 25905702 NRF1_MA0506.1 6.884300220814618 + +chr1 25905697 25905707 NRF1_MA0506.1 7.052163235879467 - +chr1 26111029 26111039 NRF1_MA0506.1 7.295391159316313 - +chr1 26111133 26111143 NRF1_MA0506.1 8.049537660162724 - +chr1 26111184 26111194 NRF1_MA0506.1 8.174698446929060 - +chr1 26111463 26111473 NRF1_MA0506.1 6.859784749496020 - +chr1 26111841 26111851 NRF1_MA0506.1 7.967802426175568 + +chr1 26169999 26170009 NRF1_MA0506.1 7.044725663456099 - +chr1 26234430 26234440 NRF1_MA0506.1 11.390062568143911 + +chr1 26279999 26280009 NRF1_MA0506.1 7.489168357346952 + +chr1 26336454 26336464 NRF1_MA0506.1 7.232127472996480 + +chr1 26432223 26432233 NRF1_MA0506.1 8.150552769359107 - +chr1 26432229 26432239 NRF1_MA0506.1 11.596958588897404 - +chr1 26432230 26432240 NRF1_MA0506.1 10.471825988615247 + +chr1 26472741 26472751 NRF1_MA0506.1 6.943776528200464 - +chr1 26500186 26500196 NRF1_MA0506.1 7.629533911433091 - +chr1 26500675 26500685 NRF1_MA0506.1 7.231738139324441 + +chr1 26500706 26500716 NRF1_MA0506.1 7.129944456569344 - +chr1 26500712 26500722 NRF1_MA0506.1 8.257622688245975 - +chr1 26500759 26500769 NRF1_MA0506.1 7.818804371806126 + +chr1 26500971 26500981 NRF1_MA0506.1 7.918299676232063 + +chr1 26500976 26500986 NRF1_MA0506.1 8.506542050051152 - +chr1 26620556 26620566 NRF1_MA0506.1 7.485838531692279 + +chr1 26621234 26621244 NRF1_MA0506.1 7.214234993675483 - +chr1 26695500 26695510 NRF1_MA0506.1 9.737205532707595 - +chr1 26695517 26695527 NRF1_MA0506.1 8.548809246105606 - +chr1 26695660 26695670 NRF1_MA0506.1 8.130109037942148 - +chr1 26787947 26787957 NRF1_MA0506.1 12.269369855756661 - +chr1 26787948 26787958 NRF1_MA0506.1 10.117375744435785 + +chr1 26788411 26788421 NRF1_MA0506.1 8.489332938719759 + +chr1 26826713 26826723 NRF1_MA0506.1 8.174698446929060 - +chr1 26826909 26826919 NRF1_MA0506.1 7.129944456569344 - +chr1 26889980 26889990 NRF1_MA0506.1 8.173254615985588 + +chr1 26890057 26890067 NRF1_MA0506.1 7.489168357346952 + +chr1 26921707 26921717 NRF1_MA0506.1 7.968779388292754 - +chr1 26921717 26921727 NRF1_MA0506.1 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11.934960184699341 + +chr1 28914314 28914324 NRF1_MA0506.1 8.578561118283393 - +chr1 28914692 28914702 NRF1_MA0506.1 7.850457787503450 + +chr1 28914785 28914795 NRF1_MA0506.1 8.174698446929060 + +chr1 28914901 28914911 NRF1_MA0506.1 7.521947735066887 - +chr1 29181465 29181475 NRF1_MA0506.1 12.269369855756661 - +chr1 29181466 29181476 NRF1_MA0506.1 10.471825988615247 + +chr1 29230964 29230974 NRF1_MA0506.1 10.117375744435785 - +chr1 29230965 29230975 NRF1_MA0506.1 11.596958588897404 + +chr1 30718616 30718626 NRF1_MA0506.1 10.678722009368739 - +chr1 30718719 30718729 NRF1_MA0506.1 7.489168357346952 + +chr1 30718893 30718903 NRF1_MA0506.1 7.129944456569344 - +chr1 31065909 31065919 NRF1_MA0506.1 6.833087819830106 + +chr1 31155126 31155136 NRF1_MA0506.1 9.381700791256698 - +chr1 31155127 31155137 NRF1_MA0506.1 9.635411849952495 + +chr1 31155132 31155142 NRF1_MA0506.1 9.381700791256698 - +chr1 31155133 31155143 NRF1_MA0506.1 9.635411849952495 + +chr1 31155506 31155516 NRF1_MA0506.1 7.053217733150902 + +chr1 31644785 31644795 NRF1_MA0506.1 7.611908351052634 - +chr1 31937948 31937958 NRF1_MA0506.1 9.651860498330020 - +chr1 31937949 31937959 NRF1_MA0506.1 10.324271765189277 + +chr1 31938156 31938166 NRF1_MA0506.1 8.174698446929060 + +chr1 31938358 31938368 NRF1_MA0506.1 7.845062432469889 - +chr1 32013554 32013564 NRF1_MA0506.1 7.129944456569344 - +chr1 32013680 32013690 NRF1_MA0506.1 12.062473835003168 - +chr1 32013681 32013691 NRF1_MA0506.1 12.416924079182630 + +chr1 32013762 32013772 NRF1_MA0506.1 12.623820099936124 - +chr1 32013763 32013773 NRF1_MA0506.1 9.444964477576530 + +chr1 32013835 32013845 NRF1_MA0506.1 11.934960184699341 - +chr1 32013836 32013846 NRF1_MA0506.1 9.847216037362459 + +chr1 32073085 32073095 NRF1_MA0506.1 8.130109037942148 + +chr1 32179659 32179669 NRF1_MA0506.1 10.324271765189277 - +chr1 32179660 32179670 NRF1_MA0506.1 9.651860498330020 + +chr1 32179894 32179904 NRF1_MA0506.1 12.416924079182630 - +chr1 32179895 32179905 NRF1_MA0506.1 12.062473835003168 + +chr1 32179900 32179910 NRF1_MA0506.1 8.607159591468845 - +chr1 32179947 32179957 NRF1_MA0506.1 7.444968282032080 - +chr1 32250214 32250224 NRF1_MA0506.1 7.896344569438650 + +chr1 32292172 32292182 NRF1_MA0506.1 8.240559522481455 - +chr1 32351618 32351628 NRF1_MA0506.1 6.859784749496020 - +chr1 32500582 32500592 NRF1_MA0506.1 7.103247526903430 + +chr1 32500658 32500668 NRF1_MA0506.1 7.106966686230143 - +chr1 32651002 32651012 NRF1_MA0506.1 8.522869054362706 + +chr1 32651058 32651068 NRF1_MA0506.1 6.833087819830106 + +chr1 32964869 32964879 NRF1_MA0506.1 12.623820099936124 - +chr1 33181242 33181252 NRF1_MA0506.1 7.868657297478939 - +chr1 33256565 33256575 NRF1_MA0506.1 7.018028733790186 + +chr1 33256702 33256712 NRF1_MA0506.1 9.763902462373506 + +chr1 33256753 33256763 NRF1_MA0506.1 9.381700791256698 - +chr1 33256800 33256810 NRF1_MA0506.1 9.322224483870851 + +chr1 33349393 33349403 NRF1_MA0506.1 7.299281269651361 - +chr1 33349845 33349855 NRF1_MA0506.1 9.719702387058634 - +chr1 33349846 33349856 NRF1_MA0506.1 9.365252142879172 + +chr1 33349847 33349857 NRF1_MA0506.1 9.365252142879172 - +chr1 33349848 33349858 NRF1_MA0506.1 9.365252142879172 + +chr1 33349849 33349859 NRF1_MA0506.1 9.365252142879172 - +chr1 33349850 33349860 NRF1_MA0506.1 9.365252142879172 + +chr1 33349851 33349861 NRF1_MA0506.1 7.090518037852617 - +chr1 33430954 33430964 NRF1_MA0506.1 11.580509940519878 - +chr1 33430955 33430965 NRF1_MA0506.1 9.174804770503204 + +chr1 33430961 33430971 NRF1_MA0506.1 7.548644664732800 + +chr1 33472552 33472562 NRF1_MA0506.1 8.270908857264871 + +chr1 34985181 34985191 NRF1_MA0506.1 7.106966686230141 + +chr1 35031940 35031950 NRF1_MA0506.1 10.822417389109553 + +chr1 35079333 35079343 NRF1_MA0506.1 10.557171022992819 - +chr1 35192106 35192116 NRF1_MA0506.1 10.486166654905578 - +chr1 35268623 35268633 NRF1_MA0506.1 9.720756884330068 - +chr1 35268675 35268685 NRF1_MA0506.1 10.471825988615247 - +chr1 35268676 35268686 NRF1_MA0506.1 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6.876233397873544 - +chr1 37514716 37514726 NRF1_MA0506.1 7.502287180069804 + +chr1 37514765 37514775 NRF1_MA0506.1 8.174698446929060 + +chr1 37514821 37514831 NRF1_MA0506.1 10.471825988615247 - +chr1 37514822 37514832 NRF1_MA0506.1 12.269369855756661 + +chr1 37514827 37514837 NRF1_MA0506.1 7.444968282032080 - +chr1 37807938 37807948 NRF1_MA0506.1 9.651860498330020 - +chr1 37807939 37807949 NRF1_MA0506.1 10.324271765189277 + +chr1 37808392 37808402 NRF1_MA0506.1 8.211432549879024 - +chr1 37808482 37808492 NRF1_MA0506.1 10.486166654905578 - +chr1 37860188 37860198 NRF1_MA0506.1 8.335149505701889 + +chr1 38012535 38012545 NRF1_MA0506.1 7.399175907635561 - +chr1 38046763 38046773 NRF1_MA0506.1 8.174698446929060 - +chr1 38046921 38046931 NRF1_MA0506.1 7.215678824618955 - +chr1 38046924 38046934 NRF1_MA0506.1 7.548644664732800 + +chr1 38047067 38047077 NRF1_MA0506.1 7.232127472996480 - +chr1 38859663 38859673 NRF1_MA0506.1 7.106966686230141 + +chr1 38873390 38873400 NRF1_MA0506.1 10.117375744435785 - +chr1 38873391 38873401 NRF1_MA0506.1 12.623820099936124 + +chr1 38990983 38990993 NRF1_MA0506.1 8.607159591468843 + +chr1 38990994 38991004 NRF1_MA0506.1 7.398198945518375 + +chr1 39409032 39409042 NRF1_MA0506.1 8.174698446929060 + +chr1 39576035 39576045 NRF1_MA0506.1 7.129944456569344 - +chr1 39576060 39576070 NRF1_MA0506.1 6.932683699412613 - +chr1 39576061 39576071 NRF1_MA0506.1 7.250303874720551 + +chr1 39576474 39576484 NRF1_MA0506.1 7.568386479453250 - +chr1 39576480 39576490 NRF1_MA0506.1 9.091491195514251 - +chr1 39576932 39576942 NRF1_MA0506.1 7.232127472996480 - +chr1 39576935 39576945 NRF1_MA0506.1 7.904538739855736 + +chr1 39789032 39789042 NRF1_MA0506.1 7.843618601526416 - +chr1 39883505 39883515 NRF1_MA0506.1 9.813755388046321 + +chr1 39883545 39883555 NRF1_MA0506.1 10.471825988615247 - +chr1 39883546 39883556 NRF1_MA0506.1 12.269369855756661 + +chr1 39901721 39901731 NRF1_MA0506.1 7.485838531692279 + +chr1 39901882 39901892 NRF1_MA0506.1 9.343297036085758 - +chr1 39901883 39901893 NRF1_MA0506.1 8.988505944534442 + +chr1 39901933 39901943 NRF1_MA0506.1 7.090518037852617 + +chr1 39901934 39901944 NRF1_MA0506.1 9.365252142879172 - +chr1 39901935 39901945 NRF1_MA0506.1 8.692840876019915 + +chr1 39960807 39960817 NRF1_MA0506.1 8.316949995726400 - +chr1 40097144 40097154 NRF1_MA0506.1 7.377126393303467 - +chr1 40097257 40097267 NRF1_MA0506.1 7.360677744925941 + +chr1 40161293 40161303 NRF1_MA0506.1 7.161597872266669 - +chr1 40161324 40161334 NRF1_MA0506.1 8.133828197268862 - +chr1 40373666 40373676 NRF1_MA0506.1 11.390062568143911 - +chr1 40373667 40373677 NRF1_MA0506.1 12.062473835003168 + +chr1 40450050 40450060 NRF1_MA0506.1 7.363911251760416 + +chr1 40450055 40450065 NRF1_MA0506.1 12.623820099936124 - +chr1 40450056 40450066 NRF1_MA0506.1 10.471825988615247 + +chr1 40508720 40508730 NRF1_MA0506.1 7.968779388292754 - +chr1 40531634 40531644 NRF1_MA0506.1 7.059930430775900 - +chr1 40691743 40691753 NRF1_MA0506.1 7.505499086689362 - +chr1 40691790 40691800 NRF1_MA0506.1 7.007040214520296 - +chr1 40691966 40691976 NRF1_MA0506.1 7.904538739855736 - +chr1 40692273 40692283 NRF1_MA0506.1 9.795555878070836 - +chr1 40979623 40979633 NRF1_MA0506.1 10.117375744435785 - +chr1 40979624 40979634 NRF1_MA0506.1 12.623820099936124 + +chr1 40979732 40979742 NRF1_MA0506.1 9.115328463117358 - +chr1 40980004 40980014 NRF1_MA0506.1 6.876233397873544 - +chr1 40980113 40980123 NRF1_MA0506.1 6.939497084193378 - +chr1 40980295 40980305 NRF1_MA0506.1 7.521947735066887 - +chr1 41241627 41241637 NRF1_MA0506.1 8.174698446929060 - +chr1 41241954 41241964 NRF1_MA0506.1 8.612072932425438 + +chr1 41241965 41241975 NRF1_MA0506.1 10.474246781675905 + +chr1 41242070 41242080 NRF1_MA0506.1 7.485838531692279 + +chr1 41361517 41361527 NRF1_MA0506.1 8.174698446929060 + +chr1 41361522 41361532 NRF1_MA0506.1 7.521947735066887 - +chr1 41361589 41361599 NRF1_MA0506.1 8.824624654783850 + +chr1 41662331 41662341 NRF1_MA0506.1 7.548644664732800 - +chr1 41662337 41662347 NRF1_MA0506.1 7.377126393303467 - +chr1 41662712 41662722 NRF1_MA0506.1 6.876233397873544 + +chr1 42035631 42035641 NRF1_MA0506.1 7.146393104946870 - +chr1 42035739 42035749 NRF1_MA0506.1 8.963000583093240 - +chr1 42035740 42035750 NRF1_MA0506.1 10.054112058115951 + +chr1 42036125 42036135 NRF1_MA0506.1 9.174804770503204 - +chr1 42036126 42036136 NRF1_MA0506.1 10.908098673660621 + +chr1 42335218 42335228 NRF1_MA0506.1 7.156202517233107 - +chr1 42335408 42335418 NRF1_MA0506.1 7.172651165610633 - +chr1 42456538 42456548 NRF1_MA0506.1 12.623820099936124 - +chr1 42456539 42456549 NRF1_MA0506.1 9.444964477576530 + +chr1 42658359 42658369 NRF1_MA0506.1 8.257622688245975 - +chr1 42682810 42682820 NRF1_MA0506.1 7.215678824618955 + +chr1 42682844 42682854 NRF1_MA0506.1 7.904538739855736 - +chr1 42682905 42682915 NRF1_MA0506.1 8.692840876019915 - +chr1 42682906 42682916 NRF1_MA0506.1 9.719702387058634 + +chr1 42682943 42682953 NRF1_MA0506.1 7.904538739855736 - +chr1 42682946 42682956 NRF1_MA0506.1 7.904538739855736 + +chr1 42682968 42682978 NRF1_MA0506.1 7.904538739855736 + +chr1 42766664 42766674 NRF1_MA0506.1 7.502287180069804 + +chr1 42767079 42767089 NRF1_MA0506.1 9.911456685799477 + +chr1 42767256 42767266 NRF1_MA0506.1 10.764067043746312 - +chr1 42767326 42767336 NRF1_MA0506.1 7.213936235273787 - +chr1 42817380 42817390 NRF1_MA0506.1 7.904538739855736 + +chr1 42817385 42817395 NRF1_MA0506.1 9.847216037362459 - +chr1 42817386 42817396 NRF1_MA0506.1 11.934960184699341 + +chr1 42924483 42924493 NRF1_MA0506.1 7.380736193693886 + +chr1 42924643 42924653 NRF1_MA0506.1 10.471825988615247 - +chr1 42958182 42958192 NRF1_MA0506.1 7.213936235273787 - +chr1 42958615 42958625 NRF1_MA0506.1 7.360677744925941 + +chr1 42958617 42958627 NRF1_MA0506.1 7.215678824618955 + +chr1 43358707 43358717 NRF1_MA0506.1 6.939497084193376 + +chr1 43358774 43358784 NRF1_MA0506.1 7.792107442140211 - +chr1 43389944 43389954 NRF1_MA0506.1 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9.697747280265220 + +chr1 52366286 52366296 NRF1_MA0506.1 12.269369855756661 - +chr1 52366287 52366297 NRF1_MA0506.1 10.117375744435785 + +chr1 52698332 52698342 NRF1_MA0506.1 8.173254615985588 + +chr1 52703372 52703382 NRF1_MA0506.1 7.837994224075411 - +chr1 52726382 52726392 NRF1_MA0506.1 7.407667977330364 + +chr1 52726414 52726424 NRF1_MA0506.1 7.521947735066887 - +chr1 52726589 52726599 NRF1_MA0506.1 8.464518708999467 - +chr1 52842706 52842716 NRF1_MA0506.1 9.305775835493323 + +chr1 52843121 52843131 NRF1_MA0506.1 9.795555878070836 - +chr1 52843548 52843558 NRF1_MA0506.1 7.697642719102245 - +chr1 53220394 53220404 NRF1_MA0506.1 7.962499751546936 + +chr1 53220647 53220657 NRF1_MA0506.1 6.992686928493620 + +chr1 53220652 53220662 NRF1_MA0506.1 7.925633810249314 - +chr1 53238526 53238536 NRF1_MA0506.1 8.174698446929060 + +chr1 53326767 53326777 NRF1_MA0506.1 6.920667860261381 - +chr1 53327314 53327324 NRF1_MA0506.1 9.635411849952495 - +chr1 53327315 53327325 NRF1_MA0506.1 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11.580509940519878 - +chr1 59814532 59814542 NRF1_MA0506.1 9.847216037362459 + +chr1 59814694 59814704 NRF1_MA0506.1 7.238750464994080 + +chr1 61050255 61050265 NRF1_MA0506.1 7.129944456569344 - +chr1 61077019 61077029 NRF1_MA0506.1 7.954002331856512 + +chr1 62437003 62437013 NRF1_MA0506.1 8.541068564338195 + +chr1 62437008 62437018 NRF1_MA0506.1 7.106966686230143 - +chr1 62437150 62437160 NRF1_MA0506.1 6.876233397873544 - +chr1 62688197 62688207 NRF1_MA0506.1 8.174698446929060 + +chr1 63367626 63367636 NRF1_MA0506.1 12.062473835003168 - +chr1 63367627 63367637 NRF1_MA0506.1 11.390062568143911 + +chr1 63367762 63367772 NRF1_MA0506.1 8.818968953178929 + +chr1 63593630 63593640 NRF1_MA0506.1 8.818968953178929 + +chr1 63593772 63593782 NRF1_MA0506.1 8.861333141602470 + +chr1 63594389 63594399 NRF1_MA0506.1 7.290088484687682 - +chr1 64744814 64744824 NRF1_MA0506.1 9.994635750730106 + +chr1 64744819 64744829 NRF1_MA0506.1 8.052092963281707 - +chr1 64744888 64744898 NRF1_MA0506.1 9.381700791256698 - +chr1 64744889 64744899 NRF1_MA0506.1 9.635411849952495 + +chr1 64744896 64744906 NRF1_MA0506.1 7.043407853967059 - +chr1 64744897 64744907 NRF1_MA0506.1 9.550193056839252 + +chr1 64744904 64744914 NRF1_MA0506.1 7.568386479453250 - +chr1 64966343 64966353 NRF1_MA0506.1 7.361490458699758 - +chr1 64966427 64966437 NRF1_MA0506.1 7.446022779303514 + +chr1 64966433 64966443 NRF1_MA0506.1 7.214234993675483 + +chr1 64966483 64966493 NRF1_MA0506.1 7.611908351052632 + +chr1 65067155 65067165 NRF1_MA0506.1 8.174698446929060 - +chr1 65067338 65067348 NRF1_MA0506.1 7.551699607244674 + +chr1 65067462 65067472 NRF1_MA0506.1 7.797763143745132 - +chr1 65067464 65067474 NRF1_MA0506.1 7.334935259198543 - +chr1 65067509 65067519 NRF1_MA0506.1 7.904538739855736 - +chr1 65067908 65067918 NRF1_MA0506.1 7.859949330868824 - +chr1 65147776 65147786 NRF1_MA0506.1 7.505499086689362 + +chr1 65147781 65147791 NRF1_MA0506.1 7.779377953089399 - +chr1 65148700 65148710 NRF1_MA0506.1 7.904538739855736 + +chr1 65254312 65254322 NRF1_MA0506.1 7.129944456569344 + +chr1 65254315 65254325 NRF1_MA0506.1 7.129944456569344 - +chr1 65254323 65254333 NRF1_MA0506.1 9.430936622259662 - +chr1 66924859 66924869 NRF1_MA0506.1 7.904538739855736 + +chr1 66925284 66925294 NRF1_MA0506.1 11.390062568143911 - +chr1 66925285 66925295 NRF1_MA0506.1 12.416924079182630 + +chr1 66930135 66930145 NRF1_MA0506.1 7.090518037852617 + +chr1 66930136 66930146 NRF1_MA0506.1 9.365252142879172 - +chr1 66930137 66930147 NRF1_MA0506.1 8.692840876019915 + +chr1 66930156 66930166 NRF1_MA0506.1 7.315051714313394 - +chr1 67053740 67053750 NRF1_MA0506.1 7.792107442140211 + +chr1 67053750 67053760 NRF1_MA0506.1 8.174698446929060 - +chr1 67054402 67054412 NRF1_MA0506.1 10.471825988615247 - +chr1 67054403 67054413 NRF1_MA0506.1 12.623820099936124 + +chr1 67685420 67685430 NRF1_MA0506.1 8.963000583093240 - +chr1 67685421 67685431 NRF1_MA0506.1 10.054112058115951 + +chr1 67686136 67686146 NRF1_MA0506.1 7.375831124990088 + +chr1 67686305 67686315 NRF1_MA0506.1 8.963000583093240 - +chr1 67833448 67833458 NRF1_MA0506.1 7.792107442140211 - +chr1 70221308 70221318 NRF1_MA0506.1 7.966358595232096 - +chr1 70354821 70354831 NRF1_MA0506.1 9.651860498330020 - +chr1 70354822 70354832 NRF1_MA0506.1 9.651860498330020 + +chr1 70411174 70411184 NRF1_MA0506.1 7.611908351052634 - +chr1 74198218 74198228 NRF1_MA0506.1 8.322252670355031 + +chr1 74198235 74198245 NRF1_MA0506.1 9.588659857317342 - +chr1 74733432 74733442 NRF1_MA0506.1 7.399175907635563 + +chr1 75614986 75614996 NRF1_MA0506.1 8.464518708999467 - +chr1 75745357 75745367 NRF1_MA0506.1 6.837488795330751 + +chr1 75745455 75745465 NRF1_MA0506.1 8.489332938719759 + +chr1 75786206 75786216 NRF1_MA0506.1 12.623820099936124 - +chr1 75786207 75786217 NRF1_MA0506.1 9.444964477576530 + +chr1 75796850 75796860 NRF1_MA0506.1 10.471825988615247 - +chr1 75796851 75796861 NRF1_MA0506.1 12.623820099936124 + +chr1 75796874 75796884 NRF1_MA0506.1 6.967872698773329 + +chr1 76074602 76074612 NRF1_MA0506.1 7.377126393303467 + +chr1 76074607 76074617 NRF1_MA0506.1 9.651860498330020 - +chr1 76074608 76074618 NRF1_MA0506.1 9.651860498330020 + +chr1 77282281 77282291 NRF1_MA0506.1 7.539021283019768 + +chr1 77683300 77683310 NRF1_MA0506.1 7.502287180069804 - +chr1 77759245 77759255 NRF1_MA0506.1 8.464518708999467 + +chr1 81800939 81800949 NRF1_MA0506.1 7.918299676232063 - +chr1 81801108 81801118 NRF1_MA0506.1 7.400619738579035 - +chr1 83999217 83999227 NRF1_MA0506.1 9.381700791256698 - +chr1 83999218 83999228 NRF1_MA0506.1 8.963000583093240 + +chr1 84077939 84077949 NRF1_MA0506.1 7.611908351052634 - +chr1 84077959 84077969 NRF1_MA0506.1 8.692840876019915 - +chr1 84077960 84077970 NRF1_MA0506.1 8.692840876019915 + +chr1 84077962 84077972 NRF1_MA0506.1 6.859784749496020 + +chr1 84077963 84077973 NRF1_MA0506.1 7.215678824618955 - +chr1 84078013 84078023 NRF1_MA0506.1 7.614329144113292 + +chr1 84078197 84078207 NRF1_MA0506.1 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7.845062432469889 + +chr1 223712525 223712535 NRF1_MA0506.1 7.502287180069804 + +chr1 223845802 223845812 NRF1_MA0506.1 8.174698446929060 + +chr1 223846065 223846075 NRF1_MA0506.1 10.117375744435785 - +chr1 223846066 223846076 NRF1_MA0506.1 12.269369855756661 + +chr1 223846072 223846082 NRF1_MA0506.1 7.129944456569344 + +chr1 223846174 223846184 NRF1_MA0506.1 6.833087819830106 + +chr1 223846368 223846378 NRF1_MA0506.1 7.232127472996480 + +chr1 224114232 224114242 NRF1_MA0506.1 7.106966686230141 + +chr1 224183657 224183667 NRF1_MA0506.1 11.596958588897404 - +chr1 224183658 224183668 NRF1_MA0506.1 10.117375744435785 + +chr1 224183927 224183937 NRF1_MA0506.1 7.377126393303467 - +chr1 224434644 224434654 NRF1_MA0506.1 7.485838531692279 + +chr1 224929656 224929666 NRF1_MA0506.1 9.795555878070836 - +chr1 224930029 224930039 NRF1_MA0506.1 9.651860498330020 - +chr1 224930030 224930040 NRF1_MA0506.1 9.651860498330020 + +chr1 225428076 225428086 NRF1_MA0506.1 6.859784749496020 - +chr1 225428220 225428230 NRF1_MA0506.1 7.025231452242989 - +chr1 225428357 225428367 NRF1_MA0506.1 8.194359001926141 + +chr1 225475104 225475114 NRF1_MA0506.1 9.785386866439124 - +chr1 225653066 225653076 NRF1_MA0506.1 8.174698446929060 - +chr1 225653174 225653184 NRF1_MA0506.1 7.643561766749959 + +chr1 225653272 225653282 NRF1_MA0506.1 8.049537660162724 - +chr1 225810080 225810090 NRF1_MA0506.1 7.568386479453250 - +chr1 225810228 225810238 NRF1_MA0506.1 8.194359001926143 - +chr1 225882392 225882402 NRF1_MA0506.1 9.697747280265220 - +chr1 225882393 225882403 NRF1_MA0506.1 9.342956188713904 + +chr1 225882444 225882454 NRF1_MA0506.1 8.529148691108523 + +chr1 225882614 225882624 NRF1_MA0506.1 6.898772299210596 - +chr1 226062040 226062050 NRF1_MA0506.1 9.994635750730106 - +chr1 226062227 226062237 NRF1_MA0506.1 7.213936235273787 - +chr1 226062239 226062249 NRF1_MA0506.1 6.943776528200464 - +chr1 226062310 226062320 NRF1_MA0506.1 7.967802426175568 - +chr1 226062553 226062563 NRF1_MA0506.1 6.833087819830106 + +chr1 226109986 226109996 NRF1_MA0506.1 6.891438165193345 - +chr1 226110083 226110093 NRF1_MA0506.1 7.341748643979308 - +chr1 226110122 226110132 NRF1_MA0506.1 7.214234993675483 + +chr1 226110158 226110168 NRF1_MA0506.1 7.521947735066886 + +chr1 226110787 226110797 NRF1_MA0506.1 7.106966686230143 - +chr1 226121945 226121955 NRF1_MA0506.1 7.232127472996480 - +chr1 226122544 226122554 NRF1_MA0506.1 9.381700791256698 - +chr1 226122545 226122555 NRF1_MA0506.1 9.989862094131958 + +chr1 226309294 226309304 NRF1_MA0506.1 7.106966686230141 + +chr1 226309300 226309310 NRF1_MA0506.1 9.763902462373506 + +chr1 226309696 226309706 NRF1_MA0506.1 6.884300220814618 + +chr1 226407875 226407885 NRF1_MA0506.1 7.775658793762686 - +chr1 226408020 226408030 NRF1_MA0506.1 7.170230372549975 + +chr1 226408148 226408158 NRF1_MA0506.1 8.692840876019915 - +chr1 226408149 226408159 NRF1_MA0506.1 8.692840876019915 + +chr1 226703522 226703532 NRF1_MA0506.1 7.505499086689362 - +chr1 226737213 226737223 NRF1_MA0506.1 7.462471427681040 + +chr1 226737508 226737518 NRF1_MA0506.1 7.377126393303467 + +chr1 226738225 226738235 NRF1_MA0506.1 7.161597872266669 - +chr1 226870578 226870588 NRF1_MA0506.1 8.173254615985588 - +chr1 226939996 226940006 NRF1_MA0506.1 11.390062568143911 - +chr1 226939997 226940007 NRF1_MA0506.1 12.062473835003168 + +chr1 226940424 226940434 NRF1_MA0506.1 7.154758686289633 + +chr1 227542031 227542041 NRF1_MA0506.1 9.787739729976613 - +chr1 227542398 227542408 NRF1_MA0506.1 8.486623058981916 + +chr1 227542670 227542680 NRF1_MA0506.1 9.697747280265220 - +chr1 227542671 227542681 NRF1_MA0506.1 8.316094677675185 + +chr1 227735406 227735416 NRF1_MA0506.1 10.261071124176597 + +chr1 227735437 227735447 NRF1_MA0506.1 12.623820099936124 - +chr1 227735438 227735448 NRF1_MA0506.1 9.444964477576530 + +chr1 228037824 228037834 NRF1_MA0506.1 8.133828197268862 - +chr1 228082151 228082161 NRF1_MA0506.1 8.194359001926141 + +chr1 228082504 228082514 NRF1_MA0506.1 11.596958588897404 - +chr1 228082505 228082515 NRF1_MA0506.1 10.471825988615247 + +chr1 228082517 228082527 NRF1_MA0506.1 7.629533911433091 + +chr1 228082610 228082620 NRF1_MA0506.1 8.315973033609215 - +chr1 228083148 228083158 NRF1_MA0506.1 7.779377953089397 + +chr1 228102702 228102712 NRF1_MA0506.1 7.290088484687682 - +chr1 228102775 228102785 NRF1_MA0506.1 7.779377953089397 + +chr1 228102961 228102971 NRF1_MA0506.1 7.129944456569344 - +chr1 228103076 228103086 NRF1_MA0506.1 7.548644664732800 + +chr1 228103443 228103453 NRF1_MA0506.1 9.444964477576530 - +chr1 228103444 228103454 NRF1_MA0506.1 12.623820099936124 + +chr1 228109392 228109402 NRF1_MA0506.1 7.146393104946870 - +chr1 228139939 228139949 NRF1_MA0506.1 7.129944456569344 - +chr1 228140235 228140245 NRF1_MA0506.1 7.779377953089399 - +chr1 228165553 228165563 NRF1_MA0506.1 7.083192463934188 + +chr1 228165710 228165720 NRF1_MA0506.1 6.876233397873544 + +chr1 228165879 228165889 NRF1_MA0506.1 10.119796537496443 + +chr1 228165992 228166002 NRF1_MA0506.1 8.400263570715351 - +chr1 228166089 228166099 NRF1_MA0506.1 7.444968282032080 - +chr1 228213619 228213629 NRF1_MA0506.1 6.964871598594041 + +chr1 228406650 228406660 NRF1_MA0506.1 8.529148691108523 + +chr1 228406655 228406665 NRF1_MA0506.1 9.737205532707595 - +chr1 228457674 228457684 NRF1_MA0506.1 9.651860498330020 - +chr1 228457675 228457685 NRF1_MA0506.1 9.651860498330020 + +chr1 228458683 228458693 NRF1_MA0506.1 9.719702387058634 - +chr1 228458684 228458694 NRF1_MA0506.1 9.365252142879172 + +chr1 228458685 228458695 NRF1_MA0506.1 9.365252142879172 - +chr1 228458686 228458696 NRF1_MA0506.1 8.692840876019915 + +chr1 228459204 228459214 NRF1_MA0506.1 9.813755388046321 + +chr1 228487081 228487091 NRF1_MA0506.1 7.045828647027718 - +chr1 228487517 228487527 NRF1_MA0506.1 9.322224483870851 + +chr1 228487728 228487738 NRF1_MA0506.1 8.963000583093240 - +chr1 228487729 228487739 NRF1_MA0506.1 10.054112058115951 + +chr1 228487780 228487790 NRF1_MA0506.1 6.967872698773329 - +chr1 228635591 228635601 NRF1_MA0506.1 7.461692854122328 - +chr1 228635596 228635606 NRF1_MA0506.1 7.563849432052601 + +chr1 228635597 228635607 NRF1_MA0506.1 9.365252142879172 - +chr1 228635598 228635608 NRF1_MA0506.1 9.365252142879172 + +chr1 228635599 228635609 NRF1_MA0506.1 7.090518037852617 - +chr1 228635640 228635650 NRF1_MA0506.1 8.400263570715351 + +chr1 228635645 228635655 NRF1_MA0506.1 8.224110874103930 - +chr1 228646786 228646796 NRF1_MA0506.1 7.983984155612553 + +chr1 228646791 228646801 NRF1_MA0506.1 9.267421033520174 - +chr1 229271005 229271015 NRF1_MA0506.1 8.506542050051152 - +chr1 229271063 229271073 NRF1_MA0506.1 11.934960184699341 - +chr1 229271064 229271074 NRF1_MA0506.1 9.847216037362459 + +chr1 229271155 229271165 NRF1_MA0506.1 10.471825988615247 - +chr1 229271156 229271166 NRF1_MA0506.1 12.269369855756661 + +chr1 229271277 229271287 NRF1_MA0506.1 8.049537660162724 - +chr1 229271561 229271571 NRF1_MA0506.1 9.430936622259662 + +chr1 229342171 229342181 NRF1_MA0506.1 7.215678824618955 - +chr1 229342329 229342339 NRF1_MA0506.1 9.174804770503204 - +chr1 229342330 229342340 NRF1_MA0506.1 10.908098673660621 + +chr1 229342335 229342345 NRF1_MA0506.1 8.612072932425438 - +chr1 229558208 229558218 NRF1_MA0506.1 9.447385270637188 - +chr1 229558754 229558764 NRF1_MA0506.1 6.876233397873544 + +chr1 229558811 229558821 NRF1_MA0506.1 6.876233397873544 + +chr1 229559015 229559025 NRF1_MA0506.1 7.645982559810617 + +chr1 229559020 229559030 NRF1_MA0506.1 8.670423277788677 - +chr1 229559127 229559137 NRF1_MA0506.1 8.912970789340712 - +chr1 229625596 229625606 NRF1_MA0506.1 7.712081859194064 + +chr1 229625687 229625697 NRF1_MA0506.1 7.967802426175568 + +chr1 229625703 229625713 NRF1_MA0506.1 9.635411849952495 - +chr1 229625704 229625714 NRF1_MA0506.1 10.408562302295413 + +chr1 229625820 229625830 NRF1_MA0506.1 7.779377953089397 + +chr1 229625824 229625834 NRF1_MA0506.1 7.090518037852617 + +chr1 229625825 229625835 NRF1_MA0506.1 9.365252142879172 - +chr1 229625826 229625836 NRF1_MA0506.1 9.365252142879172 + +chr1 229625827 229625837 NRF1_MA0506.1 9.365252142879172 - +chr1 229625828 229625838 NRF1_MA0506.1 9.365252142879172 + +chr1 229625829 229625839 NRF1_MA0506.1 9.365252142879172 - +chr1 229625830 229625840 NRF1_MA0506.1 8.692840876019915 + +chr1 230066814 230066824 NRF1_MA0506.1 7.859949330868824 - +chr1 230067126 230067136 NRF1_MA0506.1 8.174698446929060 - +chr1 230067213 230067223 NRF1_MA0506.1 7.360677744925941 - +chr1 230067380 230067390 NRF1_MA0506.1 7.106966686230143 - +chr1 230067387 230067397 NRF1_MA0506.1 7.502287180069804 + +chr1 230067434 230067444 NRF1_MA0506.1 8.486623058981916 + +chr1 230068004 230068014 NRF1_MA0506.1 8.486623058981916 + +chr1 230642327 230642337 NRF1_MA0506.1 8.194359001926141 + +chr1 230642466 230642476 NRF1_MA0506.1 9.381700791256698 - +chr1 230642547 230642557 NRF1_MA0506.1 8.614493725486096 - +chr1 230642771 230642781 NRF1_MA0506.1 10.075207128509531 - +chr1 230868212 230868222 NRF1_MA0506.1 7.484394700748807 - +chr1 230868319 230868329 NRF1_MA0506.1 8.133828197268862 - +chr1 230978841 230978851 NRF1_MA0506.1 11.390062568143911 - +chr1 230978842 230978852 NRF1_MA0506.1 12.062473835003168 + +chr1 231039784 231039794 NRF1_MA0506.1 9.651860498330020 - +chr1 231039785 231039795 NRF1_MA0506.1 9.651860498330020 + +chr1 231040083 231040093 NRF1_MA0506.1 8.174698446929060 - +chr1 231040231 231040241 NRF1_MA0506.1 9.091491195514251 + diff --git a/demo/known_tfbs_chr1_hg38/NRL_MA0842.1.bed b/demo/known_tfbs_chr1_hg38/NRL_MA0842.1.bed new file mode 100644 index 0000000..0868ba7 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/NRL_MA0842.1.bed @@ -0,0 +1,239 @@ +chr1 3900286 3900296 NRL_MA0842.1 7.292936720845494 - +chr1 7771335 7771345 NRL_MA0842.1 7.624833079559711 + +chr1 8167618 8167628 NRL_MA0842.1 7.901293283345055 - +chr1 8182769 8182779 NRL_MA0842.1 7.444381261225493 + +chr1 8182903 8182913 NRL_MA0842.1 8.024455565777327 - +chr1 8629632 8629642 NRL_MA0842.1 8.098384211195460 - +chr1 8879105 8879115 NRL_MA0842.1 7.310786924405554 + +chr1 9164146 9164156 NRL_MA0842.1 7.305443093510828 - +chr1 12078861 12078871 NRL_MA0842.1 7.509982089991671 - +chr1 15617196 15617206 NRL_MA0842.1 7.624833079559709 - +chr1 15835814 15835824 NRL_MA0842.1 7.658329932079392 - +chr1 16237051 16237061 NRL_MA0842.1 7.622236960891598 - +chr1 16514200 16514210 NRL_MA0842.1 8.723074790919716 - +chr1 16544712 16544722 NRL_MA0842.1 7.421668669971824 + +chr1 16728567 16728577 NRL_MA0842.1 7.421668669971822 - +chr1 16896055 16896065 NRL_MA0842.1 8.723074790919718 + +chr1 23800781 23800791 NRL_MA0842.1 8.802716774892252 + +chr1 25247292 25247302 NRL_MA0842.1 8.689430353053364 - +chr1 25820613 25820623 NRL_MA0842.1 7.988882071404163 - +chr1 28518832 28518842 NRL_MA0842.1 9.437815325338896 - +chr1 31065435 31065445 NRL_MA0842.1 7.335589767949326 + +chr1 33903418 33903428 NRL_MA0842.1 7.687195227918015 + +chr1 34866382 34866392 NRL_MA0842.1 8.119471872367447 + 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NRL_MA0842.1 7.657225618147393 + +chr1 50873814 50873824 NRL_MA0842.1 7.481331516289694 + +chr1 51518334 51518344 NRL_MA0842.1 7.435186384836845 + +chr1 51729287 51729297 NRL_MA0842.1 7.852878906105067 - +chr1 51879194 51879204 NRL_MA0842.1 7.661950670910108 - +chr1 52703216 52703226 NRL_MA0842.1 8.024455565777327 - +chr1 55288477 55288487 NRL_MA0842.1 7.530638699634118 + +chr1 56516557 56516567 NRL_MA0842.1 7.858627695883603 + +chr1 56516794 56516804 NRL_MA0842.1 8.609782742877766 + +chr1 57167813 57167823 NRL_MA0842.1 8.167957129047345 - +chr1 57546940 57546950 NRL_MA0842.1 7.231276955082525 + +chr1 58996928 58996938 NRL_MA0842.1 8.242634154799717 - +chr1 59266508 59266518 NRL_MA0842.1 7.419572156761816 + +chr1 60391414 60391424 NRL_MA0842.1 8.119323043457230 - +chr1 61077879 61077889 NRL_MA0842.1 8.263213341094907 + +chr1 61319039 61319049 NRL_MA0842.1 8.358080818774809 - +chr1 62801278 62801288 NRL_MA0842.1 8.688326039121366 - +chr1 64172211 64172221 NRL_MA0842.1 8.356615496599581 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33903525 33903535 Nkx2_5_var.2__MA0503.1 8.038507828868823 - +chr1 37926402 37926412 Nkx2_5_var.2__MA0503.1 10.560279423645552 + +chr1 37989799 37989809 Nkx2_5_var.2__MA0503.1 7.822639369237088 + +chr1 41574480 41574490 Nkx2_5_var.2__MA0503.1 8.452149879899503 - +chr1 42924478 42924488 Nkx2_5_var.2__MA0503.1 7.567850866414841 - +chr1 43221522 43221532 Nkx2_5_var.2__MA0503.1 9.731441360727985 + +chr1 44030491 44030501 Nkx2_5_var.2__MA0503.1 7.570327293087653 + +chr1 44986466 44986476 Nkx2_5_var.2__MA0503.1 8.190610647973836 - +chr1 45053084 45053094 Nkx2_5_var.2__MA0503.1 8.795358400383556 + +chr1 45326974 45326984 Nkx2_5_var.2__MA0503.1 8.317351741696335 + +chr1 45551238 45551248 Nkx2_5_var.2__MA0503.1 8.077607231905379 - +chr1 45584369 45584379 Nkx2_5_var.2__MA0503.1 8.601595277149757 - +chr1 46332094 46332104 Nkx2_5_var.2__MA0503.1 8.141374507768001 + +chr1 46341017 46341027 Nkx2_5_var.2__MA0503.1 8.532974739595833 + +chr1 46604638 46604648 Nkx2_5_var.2__MA0503.1 8.905437694901348 - 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Nkx2_5_var.2__MA0503.1 8.200640172800755 + +chr1 65459516 65459526 Nkx2_5_var.2__MA0503.1 9.780586189015132 + +chr1 66283043 66283053 Nkx2_5_var.2__MA0503.1 8.732470156606203 - +chr1 66375048 66375058 Nkx2_5_var.2__MA0503.1 8.076845093716019 + +chr1 66445660 66445670 Nkx2_5_var.2__MA0503.1 7.644079166112629 - +chr1 66445944 66445954 Nkx2_5_var.2__MA0503.1 10.088885134473824 + +chr1 66930020 66930030 Nkx2_5_var.2__MA0503.1 7.916499726526412 - +chr1 67430562 67430572 Nkx2_5_var.2__MA0503.1 7.850322125877168 - +chr1 67430918 67430928 Nkx2_5_var.2__MA0503.1 8.837062619079660 - +chr1 70410989 70410999 Nkx2_5_var.2__MA0503.1 7.938070918707421 + +chr1 70412223 70412233 Nkx2_5_var.2__MA0503.1 9.549595464610851 + +chr1 71080613 71080623 Nkx2_5_var.2__MA0503.1 8.533712066313582 - +chr1 74517772 74517782 Nkx2_5_var.2__MA0503.1 7.673857405666942 + +chr1 74579506 74579516 Nkx2_5_var.2__MA0503.1 7.703323094880012 - +chr1 75786191 75786201 Nkx2_5_var.2__MA0503.1 7.850322125877168 - +chr1 75797349 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107451721 107451731 Nkx2_5_var.2__MA0503.1 9.151321140084953 - +chr1 107499390 107499400 Nkx2_5_var.2__MA0503.1 8.256806057238334 - +chr1 107950064 107950074 Nkx2_5_var.2__MA0503.1 10.106746146911469 - +chr1 108559774 108559784 Nkx2_5_var.2__MA0503.1 7.673857405666942 + +chr1 109090703 109090713 Nkx2_5_var.2__MA0503.1 7.708291577391144 + +chr1 109213936 109213946 Nkx2_5_var.2__MA0503.1 7.714786660956254 - +chr1 110034881 110034891 Nkx2_5_var.2__MA0503.1 7.712597072151990 + +chr1 110407631 110407641 Nkx2_5_var.2__MA0503.1 7.692317848559541 + +chr1 110631156 110631166 Nkx2_5_var.2__MA0503.1 9.297775253446927 - +chr1 110787659 110787669 Nkx2_5_var.2__MA0503.1 7.974470279802352 - +chr1 111204359 111204369 Nkx2_5_var.2__MA0503.1 8.518327480548745 - +chr1 111216394 111216404 Nkx2_5_var.2__MA0503.1 7.715523987674001 + +chr1 111448766 111448776 Nkx2_5_var.2__MA0503.1 7.685405912943054 + +chr1 111449355 111449365 Nkx2_5_var.2__MA0503.1 8.601595277149757 + +chr1 111508268 111508278 Nkx2_5_var.2__MA0503.1 8.905437694901348 + +chr1 111593071 111593081 Nkx2_5_var.2__MA0503.1 7.834851310193310 - +chr1 113073459 113073469 Nkx2_5_var.2__MA0503.1 8.038511568316091 - +chr1 113858757 113858767 Nkx2_5_var.2__MA0503.1 8.668510204516748 + +chr1 113905328 113905338 Nkx2_5_var.2__MA0503.1 9.135936554320116 - +chr1 114581559 114581569 Nkx2_5_var.2__MA0503.1 8.533712066313580 + +chr1 114780552 114780562 Nkx2_5_var.2__MA0503.1 8.668510204516748 + +chr1 116504679 116504689 Nkx2_5_var.2__MA0503.1 9.930277047997626 + +chr1 119267470 119267480 Nkx2_5_var.2__MA0503.1 7.597764587995497 - +chr1 119565311 119565321 Nkx2_5_var.2__MA0503.1 8.751272967965345 + +chr1 120415640 120415650 Nkx2_5_var.2__MA0503.1 7.850322125877168 - +chr1 120914316 120914326 Nkx2_5_var.2__MA0503.1 8.515851053875934 + +chr1 144103679 144103689 Nkx2_5_var.2__MA0503.1 11.508279611106643 - +chr1 144103687 144103697 Nkx2_5_var.2__MA0503.1 8.767671265039858 - +chr1 144104184 144104194 Nkx2_5_var.2__MA0503.1 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151254971 151254981 Nkx2_5_var.2__MA0503.1 7.916499726526412 - +chr1 151399793 151399803 Nkx2_5_var.2__MA0503.1 8.187936366859024 - +chr1 152048350 152048360 Nkx2_5_var.2__MA0503.1 9.616510391977842 - +chr1 153957869 153957879 Nkx2_5_var.2__MA0503.1 11.373481472903475 + +chr1 153967754 153967764 Nkx2_5_var.2__MA0503.1 8.526800130697096 - +chr1 154860371 154860381 Nkx2_5_var.2__MA0503.1 8.140882642782490 + +chr1 154942645 154942655 Nkx2_5_var.2__MA0503.1 8.464853685841236 - +chr1 155227808 155227818 Nkx2_5_var.2__MA0503.1 7.819671077578763 - +chr1 155946424 155946434 Nkx2_5_var.2__MA0503.1 7.992592544197855 + +chr1 156660332 156660342 Nkx2_5_var.2__MA0503.1 8.829617709895718 - +chr1 157512100 157512110 Nkx2_5_var.2__MA0503.1 8.065350169612078 - +chr1 157562594 157562604 Nkx2_5_var.2__MA0503.1 9.131954551352118 + +chr1 157562828 157562838 Nkx2_5_var.2__MA0503.1 9.550332791328598 + +chr1 158286052 158286062 Nkx2_5_var.2__MA0503.1 7.577798933948823 - +chr1 159068543 159068553 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171486263 171486273 Nkx2_5_var.2__MA0503.1 8.022058233410926 - +chr1 171742415 171742425 Nkx2_5_var.2__MA0503.1 9.584750501368452 - +chr1 172390807 172390817 Nkx2_5_var.2__MA0503.1 8.004248519356663 - +chr1 172391167 172391177 Nkx2_5_var.2__MA0503.1 7.817579973368150 + +chr1 172533077 172533087 Nkx2_5_var.2__MA0503.1 8.230266382546194 - +chr1 172639373 172639383 Nkx2_5_var.2__MA0503.1 7.573493439187977 - +chr1 172725315 172725325 Nkx2_5_var.2__MA0503.1 7.736403280977751 - +chr1 172746254 172746264 Nkx2_5_var.2__MA0503.1 8.695352545260004 - +chr1 173196004 173196014 Nkx2_5_var.2__MA0503.1 9.096799514594519 + +chr1 173355610 173355620 Nkx2_5_var.2__MA0503.1 8.805794593455779 + +chr1 173429973 173429983 Nkx2_5_var.2__MA0503.1 8.695352545260004 + +chr1 174815171 174815181 Nkx2_5_var.2__MA0503.1 8.652060609058852 - +chr1 174874639 174874649 Nkx2_5_var.2__MA0503.1 8.856292866614202 + +chr1 174969050 174969060 Nkx2_5_var.2__MA0503.1 8.783441173266890 - +chr1 174998960 174998970 Nkx2_5_var.2__MA0503.1 8.636086880227248 + +chr1 174999015 174999025 Nkx2_5_var.2__MA0503.1 8.636086880227248 + +chr1 175599342 175599352 Nkx2_5_var.2__MA0503.1 8.256806057238334 - +chr1 177946038 177946048 Nkx2_5_var.2__MA0503.1 7.957437507440256 + +chr1 178579798 178579808 Nkx2_5_var.2__MA0503.1 8.198527332324771 - +chr1 179081914 179081924 Nkx2_5_var.2__MA0503.1 8.256806057238334 + +chr1 179229512 179229522 Nkx2_5_var.2__MA0503.1 10.498332978789692 - +chr1 179294262 179294272 Nkx2_5_var.2__MA0503.1 9.078938502156870 + +chr1 179954200 179954210 Nkx2_5_var.2__MA0503.1 9.286119278288121 + +chr1 181033407 181033417 Nkx2_5_var.2__MA0503.1 9.868330603141766 - +chr1 181129205 181129215 Nkx2_5_var.2__MA0503.1 10.044799702055609 + +chr1 181482919 181482929 Nkx2_5_var.2__MA0503.1 8.886071106168513 + +chr1 181504570 181504580 Nkx2_5_var.2__MA0503.1 7.715523987674001 - +chr1 181936515 181936525 Nkx2_5_var.2__MA0503.1 9.549595464610851 - +chr1 181936580 181936590 Nkx2_5_var.2__MA0503.1 10.234119465749211 - +chr1 182029607 182029617 Nkx2_5_var.2__MA0503.1 8.299490729258686 + +chr1 182030066 182030076 Nkx2_5_var.2__MA0503.1 7.834851310193310 - +chr1 182030167 182030177 Nkx2_5_var.2__MA0503.1 7.692317848559541 + +chr1 182391518 182391528 Nkx2_5_var.2__MA0503.1 8.367079746887681 + +chr1 182589083 182589093 Nkx2_5_var.2__MA0503.1 7.889062431618566 + +chr1 182615361 182615371 Nkx2_5_var.2__MA0503.1 7.570327293087653 + +chr1 183048751 183048761 Nkx2_5_var.2__MA0503.1 7.958020684344454 - +chr1 183604520 183604530 Nkx2_5_var.2__MA0503.1 7.819671077578763 - +chr1 183911175 183911185 Nkx2_5_var.2__MA0503.1 8.153438797618964 - +chr1 183912203 183912213 Nkx2_5_var.2__MA0503.1 9.089374695229095 + +chr1 184892818 184892828 Nkx2_5_var.2__MA0503.1 8.197115915345019 - +chr1 185526557 185526567 Nkx2_5_var.2__MA0503.1 8.256806057238334 + +chr1 186559624 186559634 Nkx2_5_var.2__MA0503.1 7.992592544197855 - +chr1 187073499 187073509 Nkx2_5_var.2__MA0503.1 7.719772690337908 + +chr1 187986408 187986418 Nkx2_5_var.2__MA0503.1 9.266752689555286 + +chr1 188782559 188782569 Nkx2_5_var.2__MA0503.1 7.832760205982696 + +chr1 190084665 190084675 Nkx2_5_var.2__MA0503.1 7.822147504251575 - +chr1 190664243 190664253 Nkx2_5_var.2__MA0503.1 7.573741560719107 - +chr1 191174752 191174762 Nkx2_5_var.2__MA0503.1 8.516525144137937 + +chr1 193070570 193070580 Nkx2_5_var.2__MA0503.1 9.224172833432263 + +chr1 193338320 193338330 Nkx2_5_var.2__MA0503.1 8.501952175704192 - +chr1 193438386 193438396 Nkx2_5_var.2__MA0503.1 8.621857593128034 + +chr1 194830860 194830870 Nkx2_5_var.2__MA0503.1 10.424743958724637 + +chr1 195195913 195195923 Nkx2_5_var.2__MA0503.1 8.399310662094614 + +chr1 198132455 198132465 Nkx2_5_var.2__MA0503.1 8.851709878126748 + +chr1 198158034 198158044 Nkx2_5_var.2__MA0503.1 8.813219412821203 - +chr1 198168237 198168247 Nkx2_5_var.2__MA0503.1 10.559542096927805 - diff --git a/demo/known_tfbs_chr1_hg38/Nkx3_1_MA0124.2.bed b/demo/known_tfbs_chr1_hg38/Nkx3_1_MA0124.2.bed new file mode 100644 index 0000000..95de6f7 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/Nkx3_1_MA0124.2.bed @@ -0,0 +1,115 @@ +chr1 1692941 1692949 Nkx3_1_MA0124.2 8.581166925130983 - +chr1 1746220 1746228 Nkx3_1_MA0124.2 8.581166925130983 - +chr1 6393708 6393716 Nkx3_1_MA0124.2 8.763681996299130 - +chr1 8397451 8397459 Nkx3_1_MA0124.2 8.100774931365608 - +chr1 9069750 9069758 Nkx3_1_MA0124.2 8.031321126491109 - +chr1 11908276 11908284 Nkx3_1_MA0124.2 8.570135633294662 - +chr1 15231751 15231759 Nkx3_1_MA0124.2 8.418035392828891 + +chr1 19800017 19800025 Nkx3_1_MA0124.2 8.246556784064303 + +chr1 21294274 21294282 Nkx3_1_MA0124.2 7.900910180594061 + +chr1 23800780 23800788 Nkx3_1_MA0124.2 9.164125224406195 - +chr1 23980927 23980935 Nkx3_1_MA0124.2 7.846656268090644 + +chr1 27234514 27234522 Nkx3_1_MA0124.2 8.031321126491109 - +chr1 27365682 27365690 Nkx3_1_MA0124.2 9.681250436641024 + +chr1 28199732 28199740 Nkx3_1_MA0124.2 10.264208735916235 + +chr1 28648274 28648282 Nkx3_1_MA0124.2 7.831456375719561 + +chr1 28648775 28648783 Nkx3_1_MA0124.2 8.931539887229601 - +chr1 28648901 28648909 Nkx3_1_MA0124.2 9.164125224406195 + +chr1 35268614 35268622 Nkx3_1_MA0124.2 8.348581587954390 + +chr1 36397559 36397567 Nkx3_1_MA0124.2 9.346640295574343 + +chr1 38173359 38173367 Nkx3_1_MA0124.2 8.100774931365610 + +chr1 38559406 38559414 Nkx3_1_MA0124.2 8.581166925130985 + +chr1 40186547 40186555 Nkx3_1_MA0124.2 7.846656268090642 - +chr1 40374329 40374337 Nkx3_1_MA0124.2 9.000993692104100 - +chr1 41699152 41699160 Nkx3_1_MA0124.2 7.831456375719561 - +chr1 42816821 42816829 Nkx3_1_MA0124.2 8.570135633294662 - +chr1 43358587 43358595 Nkx3_1_MA0124.2 7.669916872556168 - +chr1 44820035 44820043 Nkx3_1_MA0124.2 8.570135633294662 + +chr1 54716227 54716235 Nkx3_1_MA0124.2 10.264208735916235 + +chr1 55214597 55214605 Nkx3_1_MA0124.2 8.031321126491109 + +chr1 55288391 55288399 Nkx3_1_MA0124.2 7.831456375719561 - +chr1 56045654 56045662 Nkx3_1_MA0124.2 8.031321126491109 - +chr1 58699413 58699421 Nkx3_1_MA0124.2 7.987177334019449 - +chr1 59297163 59297171 Nkx3_1_MA0124.2 9.681250436641024 + +chr1 61077742 61077750 Nkx3_1_MA0124.2 7.664141196922497 + +chr1 61724976 61724984 Nkx3_1_MA0124.2 8.263906463667704 + +chr1 62811118 62811126 Nkx3_1_MA0124.2 8.246556784064300 - +chr1 64172152 64172160 Nkx3_1_MA0124.2 8.446421534835851 + +chr1 64223574 64223582 Nkx3_1_MA0124.2 8.764224708432536 - +chr1 64223658 64223666 Nkx3_1_MA0124.2 7.831456375719561 - +chr1 65068457 65068465 Nkx3_1_MA0124.2 9.000993692104100 - +chr1 66283453 66283461 Nkx3_1_MA0124.2 8.581166925130985 + +chr1 66352052 66352060 Nkx3_1_MA0124.2 7.900910180594061 - +chr1 66374589 66374597 Nkx3_1_MA0124.2 8.100774931365610 + +chr1 66396672 66396680 Nkx3_1_MA0124.2 9.164125224406195 + +chr1 67339699 67339707 Nkx3_1_MA0124.2 8.031321126491109 + +chr1 67686127 67686135 Nkx3_1_MA0124.2 8.031321126491109 - +chr1 70354975 70354983 Nkx3_1_MA0124.2 10.264208735916235 + +chr1 70685440 70685448 Nkx3_1_MA0124.2 7.900910180594061 + +chr1 71053791 71053799 Nkx3_1_MA0124.2 7.669916872556169 + +chr1 72433514 72433522 Nkx3_1_MA0124.2 8.100774931365610 + +chr1 72433703 72433711 Nkx3_1_MA0124.2 9.164125224406195 + +chr1 74653068 74653076 Nkx3_1_MA0124.2 9.164125224406195 + +chr1 74681579 74681587 Nkx3_1_MA0124.2 8.263906463667704 + +chr1 74732947 74732955 Nkx3_1_MA0124.2 8.931539887229601 + +chr1 75937640 75937648 Nkx3_1_MA0124.2 8.763681996299132 + +chr1 76294731 76294739 Nkx3_1_MA0124.2 9.363989975177743 + +chr1 77927885 77927893 Nkx3_1_MA0124.2 9.164125224406195 + +chr1 77978683 77978691 Nkx3_1_MA0124.2 7.846656268090642 - +chr1 78088531 78088539 Nkx3_1_MA0124.2 8.100774931365608 - +chr1 79461008 79461016 Nkx3_1_MA0124.2 7.987177334019449 - +chr1 82979757 82979765 Nkx3_1_MA0124.2 8.246556784064303 + +chr1 83487635 83487643 Nkx3_1_MA0124.2 7.831456375719561 - +chr1 83501030 83501038 Nkx3_1_MA0124.2 8.763681996299130 - +chr1 84479469 84479477 Nkx3_1_MA0124.2 7.987177334019450 + +chr1 84574599 84574607 Nkx3_1_MA0124.2 9.681250436641024 - +chr1 84969935 84969943 Nkx3_1_MA0124.2 7.831456375719561 - +chr1 85276798 85276806 Nkx3_1_MA0124.2 8.348581587954390 - +chr1 86704405 86704413 Nkx3_1_MA0124.2 7.664141196922495 - +chr1 87449497 87449505 Nkx3_1_MA0124.2 8.263906463667702 - +chr1 88868039 88868047 Nkx3_1_MA0124.2 7.664141196922495 - +chr1 88868187 88868195 Nkx3_1_MA0124.2 9.346640295574343 - +chr1 89022471 89022479 Nkx3_1_MA0124.2 7.663598484789091 + +chr1 89064930 89064938 Nkx3_1_MA0124.2 8.581166925130985 + +chr1 89300302 89300310 Nkx3_1_MA0124.2 8.100774931365608 - +chr1 89855757 89855765 Nkx3_1_MA0124.2 10.264208735916235 + +chr1 90358646 90358654 Nkx3_1_MA0124.2 8.031321126491109 - +chr1 92975177 92975185 Nkx3_1_MA0124.2 8.764224708432536 - +chr1 93014844 93014852 Nkx3_1_MA0124.2 8.570135633294662 + +chr1 93033895 93033903 Nkx3_1_MA0124.2 8.931539887229601 + +chr1 93079436 93079444 Nkx3_1_MA0124.2 7.831456375719561 - +chr1 93879312 93879320 Nkx3_1_MA0124.2 7.669916872556168 - +chr1 96955186 96955194 Nkx3_1_MA0124.2 8.418035392828889 - +chr1 97461790 97461798 Nkx3_1_MA0124.2 8.246556784064303 + +chr1 99750157 99750165 Nkx3_1_MA0124.2 9.363989975177743 - +chr1 99786939 99786947 Nkx3_1_MA0124.2 7.664141196922495 - +chr1 99787188 99787196 Nkx3_1_MA0124.2 10.264208735916235 + +chr1 100046838 100046846 Nkx3_1_MA0124.2 8.031321126491109 - +chr1 100076199 100076207 Nkx3_1_MA0124.2 9.681250436641024 - +chr1 100076905 100076913 Nkx3_1_MA0124.2 10.264208735916235 - +chr1 101052458 101052466 Nkx3_1_MA0124.2 8.570135633294662 - +chr1 101291774 101291782 Nkx3_1_MA0124.2 8.100774931365610 + +chr1 101506593 101506601 Nkx3_1_MA0124.2 8.246556784064300 - +chr1 101567836 101567844 Nkx3_1_MA0124.2 9.346640295574343 - +chr1 102242141 102242149 Nkx3_1_MA0124.2 7.900910180594061 + +chr1 103562156 103562164 Nkx3_1_MA0124.2 9.000993692104100 - +chr1 104760038 104760046 Nkx3_1_MA0124.2 9.363989975177743 - +chr1 106996236 106996244 Nkx3_1_MA0124.2 8.931539887229601 - +chr1 107452009 107452017 Nkx3_1_MA0124.2 8.348581587954390 + +chr1 107777364 107777372 Nkx3_1_MA0124.2 8.263906463667704 + +chr1 108200600 108200608 Nkx3_1_MA0124.2 8.764224708432536 + +chr1 110034535 110034543 Nkx3_1_MA0124.2 7.669916872556169 + +chr1 111128476 111128484 Nkx3_1_MA0124.2 8.763681996299130 - +chr1 111222187 111222195 Nkx3_1_MA0124.2 7.846656268090644 + +chr1 113759871 113759879 Nkx3_1_MA0124.2 7.663598484789091 + +chr1 113784331 113784339 Nkx3_1_MA0124.2 9.346640295574343 - +chr1 113859877 113859885 Nkx3_1_MA0124.2 7.846656268090642 - +chr1 114511985 114511993 Nkx3_1_MA0124.2 7.987177334019449 - +chr1 114758105 114758113 Nkx3_1_MA0124.2 7.664141196922497 + +chr1 115608186 115608194 Nkx3_1_MA0124.2 7.987177334019449 - +chr1 116597390 116597398 Nkx3_1_MA0124.2 9.164125224406195 - +chr1 116597432 116597440 Nkx3_1_MA0124.2 8.570135633294662 + +chr1 116769649 116769657 Nkx3_1_MA0124.2 7.987177334019449 - +chr1 117605758 117605766 Nkx3_1_MA0124.2 9.363989975177743 - +chr1 117606244 117606252 Nkx3_1_MA0124.2 9.346640295574343 - +chr1 119141003 119141011 Nkx3_1_MA0124.2 9.000993692104100 - diff --git a/demo/known_tfbs_chr1_hg38/Nobox_MA0125.1.bed b/demo/known_tfbs_chr1_hg38/Nobox_MA0125.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/Npas2_MA0626.1.bed b/demo/known_tfbs_chr1_hg38/Npas2_MA0626.1.bed new file mode 100644 index 0000000..955a496 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/Npas2_MA0626.1.bed @@ -0,0 +1,118 @@ +chr1 1778870 1778879 Npas2_MA0626.1 8.065941739728274 + +chr1 2195351 2195360 Npas2_MA0626.1 8.136642547309522 + +chr1 2195351 2195360 Npas2_MA0626.1 8.458117575567426 - +chr1 2548890 2548899 Npas2_MA0626.1 8.136642547309522 + +chr1 2548890 2548899 Npas2_MA0626.1 8.024795562624135 - +chr1 2586105 2586114 Npas2_MA0626.1 8.522106949123730 + +chr1 2586105 2586114 Npas2_MA0626.1 8.397721870978859 - +chr1 3677206 3677215 Npas2_MA0626.1 7.839479264339386 + +chr1 3677206 3677215 Npas2_MA0626.1 7.839479264339386 - +chr1 6199514 6199523 Npas2_MA0626.1 7.935848088977751 + +chr1 6199514 6199523 Npas2_MA0626.1 8.244652064349740 - +chr1 6602321 6602330 Npas2_MA0626.1 8.024795562624135 + +chr1 6602321 6602330 Npas2_MA0626.1 8.136642547309524 - +chr1 6861563 6861572 Npas2_MA0626.1 9.732268492728075 + +chr1 7783919 7783928 Npas2_MA0626.1 8.024795562624135 + +chr1 7783919 7783928 Npas2_MA0626.1 8.136642547309524 - +chr1 8878371 8878380 Npas2_MA0626.1 8.085003783122106 + +chr1 8878451 8878460 Npas2_MA0626.1 8.416783914372690 + +chr1 8878451 8878460 Npas2_MA0626.1 8.541168992517562 - +chr1 8879278 8879287 Npas2_MA0626.1 8.047695073663139 + +chr1 8879278 8879287 Npas2_MA0626.1 8.132805079664351 - +chr1 11060210 11060219 Npas2_MA0626.1 8.136642547309522 + +chr1 11060210 11060219 Npas2_MA0626.1 8.024795562624135 - +chr1 11273516 11273525 Npas2_MA0626.1 8.451406141542481 + +chr1 11273516 11273525 Npas2_MA0626.1 8.005546035139709 - +chr1 12078676 12078685 Npas2_MA0626.1 8.477179618961257 + +chr1 12078676 12078685 Npas2_MA0626.1 8.155704590703355 - +chr1 15584660 15584669 Npas2_MA0626.1 9.493162463518043 + +chr1 15603647 15603656 Npas2_MA0626.1 9.607883414583203 + +chr1 16440592 16440601 Npas2_MA0626.1 9.630970409712802 + +chr1 18902945 18902954 Npas2_MA0626.1 9.668279119171769 - +chr1 19251817 19251826 Npas2_MA0626.1 8.126093645639408 + +chr1 19251817 19251826 Npas2_MA0626.1 7.916598561493323 - +chr1 20661375 20661384 Npas2_MA0626.1 8.470468184936314 + +chr1 20661375 20661384 Npas2_MA0626.1 8.024608078533539 - +chr1 23555037 23555046 Npas2_MA0626.1 8.136642547309522 + +chr1 23555037 23555046 Npas2_MA0626.1 8.024795562624135 - +chr1 25906506 25906515 Npas2_MA0626.1 8.547880426542505 + +chr1 25906506 25906515 Npas2_MA0626.1 8.547880426542505 - +chr1 26169926 26169935 Npas2_MA0626.1 7.839479264339386 + +chr1 26169926 26169935 Npas2_MA0626.1 7.839479264339386 - +chr1 26432115 26432124 Npas2_MA0626.1 8.566127092607640 + +chr1 26432115 26432124 Npas2_MA0626.1 8.047695073663139 - +chr1 26500978 26500987 Npas2_MA0626.1 8.043857606017966 + +chr1 26500978 26500987 Npas2_MA0626.1 8.155704590703355 - +chr1 27726316 27726325 Npas2_MA0626.1 8.155704590703355 + +chr1 27726316 27726325 Npas2_MA0626.1 8.043857606017966 - +chr1 28518995 28519004 Npas2_MA0626.1 9.168093766292403 + +chr1 28643181 28643190 Npas2_MA0626.1 9.560269602131553 - +chr1 31155498 31155507 Npas2_MA0626.1 8.522106949123730 + +chr1 31155498 31155507 Npas2_MA0626.1 8.397721870978859 - +chr1 31788410 31788419 Npas2_MA0626.1 9.607883414583203 - +chr1 32013618 32013627 Npas2_MA0626.1 8.343502084863925 + +chr1 32013618 32013627 Npas2_MA0626.1 8.664977113121827 - +chr1 32108394 32108403 Npas2_MA0626.1 8.734771753349111 + +chr1 34859933 34859942 Npas2_MA0626.1 9.238794573873651 + +chr1 35641772 35641781 Npas2_MA0626.1 9.276103283332619 + +chr1 37595927 37595936 Npas2_MA0626.1 9.168093766292403 + +chr1 38012478 38012487 Npas2_MA0626.1 9.238794573873651 + +chr1 38047076 38047085 Npas2_MA0626.1 8.136642547309522 + +chr1 38047076 38047085 Npas2_MA0626.1 8.024795562624135 - +chr1 39509383 39509392 Npas2_MA0626.1 7.839479264339386 + +chr1 39509383 39509392 Npas2_MA0626.1 7.839479264339386 - +chr1 39576465 39576474 Npas2_MA0626.1 9.560269602131553 - +chr1 41003844 41003853 Npas2_MA0626.1 8.113555552179921 + +chr1 41003844 41003853 Npas2_MA0626.1 8.362458667896098 - +chr1 41699162 41699171 Npas2_MA0626.1 8.173951256768490 + +chr1 41699162 41699171 Npas2_MA0626.1 7.976994266081890 - +chr1 41728988 41728997 Npas2_MA0626.1 8.397721870978856 + +chr1 41728988 41728997 Npas2_MA0626.1 8.522106949123732 - +chr1 42658066 42658075 Npas2_MA0626.1 9.276103283332619 + +chr1 43172241 43172250 Npas2_MA0626.1 8.308774397332474 + +chr1 43172241 43172250 Npas2_MA0626.1 8.630116466163948 - +chr1 43367880 43367889 Npas2_MA0626.1 8.630116466163946 + +chr1 43367880 43367889 Npas2_MA0626.1 8.308774397332474 - +chr1 43946612 43946621 Npas2_MA0626.1 8.173951256768492 - +chr1 44030269 44030278 Npas2_MA0626.1 9.238794573873651 + +chr1 44775860 44775869 Npas2_MA0626.1 9.228245672203535 + +chr1 45327186 45327195 Npas2_MA0626.1 8.308774397332474 + +chr1 45327186 45327195 Npas2_MA0626.1 8.630116466163948 - +chr1 45491312 45491321 Npas2_MA0626.1 8.136642547309522 + +chr1 45491312 45491321 Npas2_MA0626.1 8.458117575567426 - +chr1 45550815 45550824 Npas2_MA0626.1 8.024795562624135 + +chr1 45550815 45550824 Npas2_MA0626.1 8.136642547309524 - +chr1 48498675 48498684 Npas2_MA0626.1 8.065941739728276 - +chr1 53326794 53326803 Npas2_MA0626.1 8.047695073663139 + +chr1 53326794 53326803 Npas2_MA0626.1 8.132805079664351 - +chr1 54716040 54716049 Npas2_MA0626.1 8.734771753349111 + +chr1 55277554 55277563 Npas2_MA0626.1 9.107698061703836 + +chr1 55288062 55288071 Npas2_MA0626.1 8.155704590703355 + +chr1 55288062 55288071 Npas2_MA0626.1 8.043857606017966 - +chr1 59759544 59759553 Npas2_MA0626.1 8.734771753349111 + +chr1 62810640 62810649 Npas2_MA0626.1 9.168093766292403 + +chr1 68181423 68181432 Npas2_MA0626.1 9.126947589188262 - +chr1 75233398 75233407 Npas2_MA0626.1 9.493162463518043 + +chr1 75797295 75797304 Npas2_MA0626.1 8.244652064349738 + +chr1 75797295 75797304 Npas2_MA0626.1 7.935848088977751 - +chr1 75909507 75909516 Npas2_MA0626.1 9.601171980558259 - +chr1 77683053 77683062 Npas2_MA0626.1 8.842781270389327 - +chr1 77683236 77683245 Npas2_MA0626.1 9.560269602131553 + +chr1 84479646 84479655 Npas2_MA0626.1 8.734771753349111 + +chr1 85200628 85200637 Npas2_MA0626.1 8.397721870978856 + +chr1 85200628 85200637 Npas2_MA0626.1 8.522106949123732 - +chr1 85708380 85708389 Npas2_MA0626.1 8.734771753349111 + +chr1 99849766 99849775 Npas2_MA0626.1 9.168093766292403 - +chr1 100895696 100895705 Npas2_MA0626.1 9.238794573873651 - +chr1 100896550 100896559 Npas2_MA0626.1 9.493162463518043 + +chr1 101026092 101026101 Npas2_MA0626.1 8.522106949123730 + +chr1 101026092 101026101 Npas2_MA0626.1 8.397721870978859 - +chr1 101309854 101309863 Npas2_MA0626.1 9.238794573873651 + +chr1 101389695 101389704 Npas2_MA0626.1 8.397721870978856 + +chr1 101389695 101389704 Npas2_MA0626.1 8.522106949123732 - +chr1 101436175 101436184 Npas2_MA0626.1 8.231655100178536 + +chr1 101436175 101436184 Npas2_MA0626.1 8.343502084863925 - +chr1 101438583 101438592 Npas2_MA0626.1 8.065941739728276 - +chr1 107057928 107057937 Npas2_MA0626.1 7.929136654952807 + +chr1 107057928 107057937 Npas2_MA0626.1 8.113555552179925 - +chr1 109619758 109619767 Npas2_MA0626.1 8.024795562624135 + diff --git a/demo/known_tfbs_chr1_hg38/Nr1h3_Rxra_MA0494.1.bed b/demo/known_tfbs_chr1_hg38/Nr1h3_Rxra_MA0494.1.bed new file mode 100644 index 0000000..5cb3d32 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/Nr1h3_Rxra_MA0494.1.bed @@ -0,0 +1,217 @@ +chr1 10503 10521 Nr1h3_Rxra_MA0494.1 9.851422815185961 + +chr1 1231708 1231726 Nr1h3_Rxra_MA0494.1 6.951536967918091 + +chr1 2585920 2585938 Nr1h3_Rxra_MA0494.1 10.181959732815585 + +chr1 3666419 3666437 Nr1h3_Rxra_MA0494.1 8.923682750518237 - +chr1 3900117 3900135 Nr1h3_Rxra_MA0494.1 7.367210684748427 + +chr1 3910827 3910845 Nr1h3_Rxra_MA0494.1 8.406256593853964 - +chr1 6784554 6784572 Nr1h3_Rxra_MA0494.1 7.954210126677772 - +chr1 6822682 6822700 Nr1h3_Rxra_MA0494.1 8.515874196271959 + +chr1 9181997 9182015 Nr1h3_Rxra_MA0494.1 7.141979471101524 - +chr1 9910960 9910978 Nr1h3_Rxra_MA0494.1 8.369632718206560 + +chr1 10398666 10398684 Nr1h3_Rxra_MA0494.1 10.597414388302033 + +chr1 10965632 10965650 Nr1h3_Rxra_MA0494.1 9.351403273941482 - +chr1 10985486 10985504 Nr1h3_Rxra_MA0494.1 7.016009405941053 + +chr1 11909252 11909270 Nr1h3_Rxra_MA0494.1 8.616780042810712 - +chr1 12040172 12040190 Nr1h3_Rxra_MA0494.1 10.076525924960480 - +chr1 14599670 14599688 Nr1h3_Rxra_MA0494.1 7.782757283295948 + +chr1 15835282 15835300 Nr1h3_Rxra_MA0494.1 7.077178309567901 - +chr1 16367096 16367114 Nr1h3_Rxra_MA0494.1 9.862967974725619 + +chr1 16513793 16513811 Nr1h3_Rxra_MA0494.1 9.172684238444759 - +chr1 19210555 19210573 Nr1h3_Rxra_MA0494.1 7.336922272678276 - +chr1 19251715 19251733 Nr1h3_Rxra_MA0494.1 7.928468101659547 - +chr1 19312596 19312614 Nr1h3_Rxra_MA0494.1 8.095442979801856 + +chr1 19799443 19799461 Nr1h3_Rxra_MA0494.1 9.605817757320009 + +chr1 21293976 21293994 Nr1h3_Rxra_MA0494.1 7.456083979308492 - +chr1 23168664 23168682 Nr1h3_Rxra_MA0494.1 7.396723491527401 + +chr1 23825659 23825677 Nr1h3_Rxra_MA0494.1 8.798043810080900 - +chr1 23959082 23959100 Nr1h3_Rxra_MA0494.1 7.185214782948124 + +chr1 26111907 26111925 Nr1h3_Rxra_MA0494.1 7.548766497855765 + +chr1 27626660 27626678 Nr1h3_Rxra_MA0494.1 11.869414888672912 + +chr1 28552825 28552843 Nr1h3_Rxra_MA0494.1 9.225846208326587 + +chr1 28649088 28649106 Nr1h3_Rxra_MA0494.1 7.464664323836636 + +chr1 28927140 28927158 Nr1h3_Rxra_MA0494.1 8.054960149758321 + +chr1 34859633 34859651 Nr1h3_Rxra_MA0494.1 7.005407961952602 + +chr1 34860052 34860070 Nr1h3_Rxra_MA0494.1 8.493904596673501 + +chr1 36149716 36149734 Nr1h3_Rxra_MA0494.1 7.278248403925987 - +chr1 39598584 39598602 Nr1h3_Rxra_MA0494.1 8.445760982219834 + +chr1 39960629 39960647 Nr1h3_Rxra_MA0494.1 7.913356621513773 - +chr1 40699426 40699444 Nr1h3_Rxra_MA0494.1 7.683456767168129 - +chr1 40699699 40699717 Nr1h3_Rxra_MA0494.1 7.114931901836764 - +chr1 40709174 40709192 Nr1h3_Rxra_MA0494.1 7.241646308041741 - +chr1 41487406 41487424 Nr1h3_Rxra_MA0494.1 8.828950850668569 - +chr1 41728785 41728803 Nr1h3_Rxra_MA0494.1 9.566924459913794 + +chr1 41752366 41752384 Nr1h3_Rxra_MA0494.1 7.306554255003766 + +chr1 44213720 44213738 Nr1h3_Rxra_MA0494.1 9.025689415372652 + +chr1 44730560 44730578 Nr1h3_Rxra_MA0494.1 7.667440523775530 - +chr1 45052934 45052952 Nr1h3_Rxra_MA0494.1 8.090300431350901 + +chr1 45394392 45394410 Nr1h3_Rxra_MA0494.1 9.178233654840140 + +chr1 46718935 46718953 Nr1h3_Rxra_MA0494.1 8.583422508273468 - +chr1 51236419 51236437 Nr1h3_Rxra_MA0494.1 7.072859238827429 + +chr1 51284841 51284859 Nr1h3_Rxra_MA0494.1 7.700786748734464 - +chr1 52055848 52055866 Nr1h3_Rxra_MA0494.1 7.492765769612727 - +chr1 53220752 53220770 Nr1h3_Rxra_MA0494.1 9.073384774966945 - +chr1 54764437 54764455 Nr1h3_Rxra_MA0494.1 7.255174913222581 - +chr1 55338287 55338305 Nr1h3_Rxra_MA0494.1 6.942500216954450 + +chr1 56526892 56526910 Nr1h3_Rxra_MA0494.1 7.275838903551167 + +chr1 58784708 58784726 Nr1h3_Rxra_MA0494.1 8.006160830755615 - +chr1 58816046 58816064 Nr1h3_Rxra_MA0494.1 7.701204442832789 - +chr1 61453385 61453403 Nr1h3_Rxra_MA0494.1 10.103656118961952 + +chr1 62810207 62810225 Nr1h3_Rxra_MA0494.1 9.945027848896975 - +chr1 64223872 64223890 Nr1h3_Rxra_MA0494.1 7.423682766167736 - +chr1 64864276 64864294 Nr1h3_Rxra_MA0494.1 7.063563292263173 + +chr1 65147933 65147951 Nr1h3_Rxra_MA0494.1 8.587153315720570 + +chr1 65420110 65420128 Nr1h3_Rxra_MA0494.1 7.338057129310123 - +chr1 66282687 66282705 Nr1h3_Rxra_MA0494.1 7.418764356600729 + +chr1 66350507 66350525 Nr1h3_Rxra_MA0494.1 7.423609320667109 - +chr1 66397409 66397427 Nr1h3_Rxra_MA0494.1 7.688331732997768 - +chr1 66445945 66445963 Nr1h3_Rxra_MA0494.1 8.582174748746185 + +chr1 66446138 66446156 Nr1h3_Rxra_MA0494.1 9.694545201089715 - +chr1 66446148 66446166 Nr1h3_Rxra_MA0494.1 7.059406741789968 - +chr1 70504988 70505006 Nr1h3_Rxra_MA0494.1 7.564544411686539 - +chr1 72433525 72433543 Nr1h3_Rxra_MA0494.1 7.971608774285330 + +chr1 74504151 74504169 Nr1h3_Rxra_MA0494.1 7.029839725412650 + +chr1 74504269 74504287 Nr1h3_Rxra_MA0494.1 7.967267125221913 + +chr1 74517791 74517809 Nr1h3_Rxra_MA0494.1 7.540530145345443 + +chr1 74714284 74714302 Nr1h3_Rxra_MA0494.1 7.638623214278459 - +chr1 74733412 74733430 Nr1h3_Rxra_MA0494.1 7.253915813135467 + +chr1 75786038 75786056 Nr1h3_Rxra_MA0494.1 7.880767661737777 - +chr1 76294705 76294723 Nr1h3_Rxra_MA0494.1 8.437344018488057 - +chr1 77219166 77219184 Nr1h3_Rxra_MA0494.1 7.493012343697251 + +chr1 77927094 77927112 Nr1h3_Rxra_MA0494.1 8.798043810080900 - +chr1 78005086 78005104 Nr1h3_Rxra_MA0494.1 8.542506816100921 - +chr1 78371285 78371303 Nr1h3_Rxra_MA0494.1 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89287180 Nr1h3_Rxra_MA0494.1 8.752827873762529 - +chr1 89363458 89363476 Nr1h3_Rxra_MA0494.1 7.847043876161016 + +chr1 89611979 89611997 Nr1h3_Rxra_MA0494.1 7.755709645962901 - +chr1 89693884 89693902 Nr1h3_Rxra_MA0494.1 7.678777488720618 + +chr1 89995696 89995714 Nr1h3_Rxra_MA0494.1 7.345833370348932 - +chr1 90509224 90509242 Nr1h3_Rxra_MA0494.1 9.814374621432444 - +chr1 90510103 90510121 Nr1h3_Rxra_MA0494.1 7.157975904446132 - +chr1 92537217 92537235 Nr1h3_Rxra_MA0494.1 8.152089250404702 + +chr1 92563831 92563849 Nr1h3_Rxra_MA0494.1 7.100478447230994 + +chr1 93015154 93015172 Nr1h3_Rxra_MA0494.1 7.848049003295954 + +chr1 93715968 93715986 Nr1h3_Rxra_MA0494.1 11.682393212630279 - +chr1 93878755 93878773 Nr1h3_Rxra_MA0494.1 8.247426453748757 + +chr1 94721433 94721451 Nr1h3_Rxra_MA0494.1 7.841575179191855 - +chr1 95095217 95095235 Nr1h3_Rxra_MA0494.1 7.955045654267173 - +chr1 96515611 96515629 Nr1h3_Rxra_MA0494.1 8.607863132961723 + +chr1 97848455 97848473 Nr1h3_Rxra_MA0494.1 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46332660 Nr2f6_var.2__MA0728.1 -11.129777442311717 + +chr1 46616260 46616274 Nr2f6_var.2__MA0728.1 -11.098618196074494 + +chr1 46616833 46616847 Nr2f6_var.2__MA0728.1 -11.280387529808625 - +chr1 46667983 46667997 Nr2f6_var.2__MA0728.1 -5.882741096290514 - +chr1 47334780 47334794 Nr2f6_var.2__MA0728.1 -1.200840898454353 - +chr1 52055793 52055807 Nr2f6_var.2__MA0728.1 -1.114971349829687 - +chr1 52697793 52697807 Nr2f6_var.2__MA0728.1 -5.470320139131597 - +chr1 52697801 52697815 Nr2f6_var.2__MA0728.1 -8.211183121340120 - +chr1 53838634 53838648 Nr2f6_var.2__MA0728.1 -8.306321796361914 + +chr1 54887044 54887058 Nr2f6_var.2__MA0728.1 -6.081402700695238 - +chr1 57547041 57547055 Nr2f6_var.2__MA0728.1 -9.088981537791788 + +chr1 58784438 58784452 Nr2f6_var.2__MA0728.1 -1.638462358148589 + +chr1 58968718 58968732 Nr2f6_var.2__MA0728.1 -8.836740046185675 + +chr1 59433035 59433049 Nr2f6_var.2__MA0728.1 -7.178498471269447 - +chr1 59926755 59926769 Nr2f6_var.2__MA0728.1 -5.369919459464000 - +chr1 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93015160 Nr2f6_var.2__MA0728.1 11.173685472779169 - +chr1 93591922 93591936 Nr2f6_var.2__MA0728.1 -7.827300772147679 + +chr1 93878794 93878808 Nr2f6_var.2__MA0728.1 -9.099013135550400 + +chr1 94854736 94854750 Nr2f6_var.2__MA0728.1 -4.889795838938086 - +chr1 95095297 95095311 Nr2f6_var.2__MA0728.1 -11.282636579792088 - +chr1 95095626 95095640 Nr2f6_var.2__MA0728.1 -7.649888198217358 - +chr1 96417068 96417082 Nr2f6_var.2__MA0728.1 -9.863040000988612 + +chr1 96721571 96721585 Nr2f6_var.2__MA0728.1 -11.427169160018884 + +chr1 97011254 97011268 Nr2f6_var.2__MA0728.1 -12.006336490617324 - +chr1 97848318 97848332 Nr2f6_var.2__MA0728.1 -11.129777442311717 - +chr1 97848326 97848340 Nr2f6_var.2__MA0728.1 -8.211183121340120 - +chr1 99750202 99750216 Nr2f6_var.2__MA0728.1 -8.679411705166583 + +chr1 100076871 100076885 Nr2f6_var.2__MA0728.1 -2.643269644724014 - +chr1 100077016 100077030 Nr2f6_var.2__MA0728.1 -11.024954832112634 - +chr1 100377376 100377390 Nr2f6_var.2__MA0728.1 -0.154801497432521 + 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7.505572666065698 + +chr1 181937336 181937350 Nr5a2_MA0505.1 7.383605557074179 - +chr1 183636137 183636151 Nr5a2_MA0505.1 10.428203846202910 - +chr1 183841665 183841679 Nr5a2_MA0505.1 6.565492983011530 - +chr1 183956924 183956938 Nr5a2_MA0505.1 7.302625763372607 + +chr1 183989426 183989440 Nr5a2_MA0505.1 7.553447686521853 + +chr1 184052311 184052325 Nr5a2_MA0505.1 7.427143598741116 - +chr1 184164158 184164172 Nr5a2_MA0505.1 8.212132273650338 + diff --git a/demo/known_tfbs_chr1_hg38/OLIG1_MA0826.1.bed b/demo/known_tfbs_chr1_hg38/OLIG1_MA0826.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/OLIG2_MA0678.1.bed b/demo/known_tfbs_chr1_hg38/OLIG2_MA0678.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/OLIG3_MA0827.1.bed b/demo/known_tfbs_chr1_hg38/OLIG3_MA0827.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/ONECUT1_MA0679.1.bed b/demo/known_tfbs_chr1_hg38/ONECUT1_MA0679.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/ONECUT2_MA0756.1.bed b/demo/known_tfbs_chr1_hg38/ONECUT2_MA0756.1.bed new file mode 100644 index 0000000..ac42336 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/ONECUT2_MA0756.1.bed @@ -0,0 +1,114 @@ +chr1 8427792 8427805 ONECUT2_MA0756.1 6.802755761191001 + +chr1 12040094 12040107 ONECUT2_MA0756.1 7.042260932860366 + +chr1 12040098 12040111 ONECUT2_MA0756.1 6.529360359009418 + +chr1 12040102 12040115 ONECUT2_MA0756.1 6.529360359009418 + +chr1 15836218 15836231 ONECUT2_MA0756.1 9.025096657837606 - +chr1 17141683 17141696 ONECUT2_MA0756.1 9.537362154904935 + +chr1 17536603 17536616 ONECUT2_MA0756.1 6.455333240919749 - +chr1 28648419 28648432 ONECUT2_MA0756.1 6.913746199965245 + +chr1 32179672 32179685 ONECUT2_MA0756.1 6.036937432686440 - +chr1 33903223 33903236 ONECUT2_MA0756.1 8.745908792590511 - +chr1 38475525 38475538 ONECUT2_MA0756.1 9.085265382293139 - 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90510049 ONECUT2_MA0756.1 10.529334786416321 + +chr1 92537102 92537115 ONECUT2_MA0756.1 6.027287863930317 + +chr1 92538522 92538535 ONECUT2_MA0756.1 6.499979553588365 + +chr1 92584510 92584523 ONECUT2_MA0756.1 6.550853862093993 + +chr1 92785519 92785532 ONECUT2_MA0756.1 6.154856685394252 + +chr1 94411402 94411415 ONECUT2_MA0756.1 6.080979065617599 + +chr1 94962878 94962891 ONECUT2_MA0756.1 7.392799707230841 - +chr1 96955295 96955308 ONECUT2_MA0756.1 10.557048672020118 - +chr1 97164125 97164138 ONECUT2_MA0756.1 10.500228367048024 + +chr1 97461586 97461599 ONECUT2_MA0756.1 6.676916000926784 + +chr1 99750021 99750034 ONECUT2_MA0756.1 7.728455824306186 - +chr1 100037731 100037744 ONECUT2_MA0756.1 6.097245449096336 - +chr1 100046693 100046706 ONECUT2_MA0756.1 9.449547058585537 - +chr1 101178854 101178867 ONECUT2_MA0756.1 7.311249010431428 - +chr1 101238720 101238733 ONECUT2_MA0756.1 6.482975978930016 + +chr1 101408289 101408302 ONECUT2_MA0756.1 6.737532479629513 + +chr1 101567433 101567446 ONECUT2_MA0756.1 7.042260932860366 + +chr1 101567668 101567681 ONECUT2_MA0756.1 7.695187095747844 + +chr1 104746666 104746679 ONECUT2_MA0756.1 6.583668973775733 - +chr1 104987261 104987274 ONECUT2_MA0756.1 6.503755569621756 - +chr1 106073005 106073018 ONECUT2_MA0756.1 7.136486963144378 - +chr1 107016133 107016146 ONECUT2_MA0756.1 6.405177924736644 + +chr1 107016961 107016974 ONECUT2_MA0756.1 11.925547075607954 - +chr1 107451752 107451765 ONECUT2_MA0756.1 6.460061037495834 - +chr1 107459610 107459623 ONECUT2_MA0756.1 6.410596987751893 - +chr1 107936221 107936234 ONECUT2_MA0756.1 7.292690408026404 + +chr1 108560687 108560700 ONECUT2_MA0756.1 6.768590381255007 - +chr1 108693082 108693095 ONECUT2_MA0756.1 7.038998898437356 - +chr1 108962881 108962894 ONECUT2_MA0756.1 7.360183593249145 + +chr1 111128369 111128382 ONECUT2_MA0756.1 7.632628060834121 + +chr1 111600545 111600558 ONECUT2_MA0756.1 7.254579764879078 + +chr1 112619558 112619571 ONECUT2_MA0756.1 6.777553565792984 + +chr1 113072701 113072714 ONECUT2_MA0756.1 8.687138105122200 - +chr1 116628647 116628660 ONECUT2_MA0756.1 6.447044687039343 + +chr1 117001579 117001592 ONECUT2_MA0756.1 7.108060470776435 - +chr1 119267393 119267406 ONECUT2_MA0756.1 8.649411012543689 - +chr1 119318685 119318698 ONECUT2_MA0756.1 6.215059185651850 - +chr1 119564898 119564911 ONECUT2_MA0756.1 7.521660991467214 - diff --git a/demo/known_tfbs_chr1_hg38/ONECUT3_MA0757.1.bed b/demo/known_tfbs_chr1_hg38/ONECUT3_MA0757.1.bed new file mode 100644 index 0000000..f2edc0d --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/ONECUT3_MA0757.1.bed @@ -0,0 +1,227 @@ +chr1 2300573 2300586 ONECUT3_MA0757.1 6.897442068518266 + +chr1 8283108 8283121 ONECUT3_MA0757.1 6.117483398357932 - +chr1 8427792 8427805 ONECUT3_MA0757.1 5.964953049782111 + +chr1 12040094 12040107 ONECUT3_MA0757.1 8.605529853801375 + +chr1 12040098 12040111 ONECUT3_MA0757.1 7.899632900841491 + +chr1 12040102 12040115 ONECUT3_MA0757.1 7.899632900841491 + +chr1 15836218 15836231 ONECUT3_MA0757.1 8.096510852805528 - +chr1 16514057 16514070 ONECUT3_MA0757.1 5.777597818468372 + +chr1 17141683 17141696 ONECUT3_MA0757.1 9.697889256386462 + +chr1 17536603 17536616 ONECUT3_MA0757.1 7.902091419405918 - +chr1 24391698 24391711 ONECUT3_MA0757.1 5.857765391127506 + +chr1 28506189 28506202 ONECUT3_MA0757.1 6.683205132307442 - +chr1 28648419 28648432 ONECUT3_MA0757.1 6.606013897317680 + +chr1 31483307 31483320 ONECUT3_MA0757.1 5.487460936523711 + +chr1 33903223 33903236 ONECUT3_MA0757.1 8.955926470525249 - +chr1 38475525 38475538 ONECUT3_MA0757.1 9.014473213067371 - +chr1 38860080 38860093 ONECUT3_MA0757.1 5.828831747902466 - +chr1 39576235 39576248 ONECUT3_MA0757.1 5.861372166715899 + +chr1 40186305 40186318 ONECUT3_MA0757.1 8.125059643990113 - +chr1 40374692 40374705 ONECUT3_MA0757.1 5.692025118713802 - +chr1 44819464 44819477 ONECUT3_MA0757.1 6.385549433293593 + +chr1 45544145 45544158 ONECUT3_MA0757.1 5.595286673851197 - +chr1 46062833 46062846 ONECUT3_MA0757.1 5.837452291498748 - 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ONECUT3_MA0757.1 9.625605879110481 + +chr1 63317385 63317398 ONECUT3_MA0757.1 5.554840142593746 + +chr1 64956747 64956760 ONECUT3_MA0757.1 7.902091419405918 + +chr1 65068429 65068442 ONECUT3_MA0757.1 6.698691374784833 - +chr1 66365211 66365224 ONECUT3_MA0757.1 6.535335799126116 - +chr1 66954493 66954506 ONECUT3_MA0757.1 5.696606133544032 - +chr1 67112986 67112999 ONECUT3_MA0757.1 6.286977984540131 - +chr1 67333172 67333185 ONECUT3_MA0757.1 5.906787051086924 - +chr1 67333372 67333385 ONECUT3_MA0757.1 6.364670279758078 + +chr1 67760397 67760410 ONECUT3_MA0757.1 9.834107194140580 - +chr1 69382617 69382630 ONECUT3_MA0757.1 10.957623347341656 + +chr1 70359252 70359265 ONECUT3_MA0757.1 9.834107194140580 + +chr1 70359256 70359269 ONECUT3_MA0757.1 7.899632900841491 + +chr1 70359260 70359273 ONECUT3_MA0757.1 7.899632900841491 + +chr1 70504764 70504777 ONECUT3_MA0757.1 8.605529853801375 - +chr1 71967809 71967822 ONECUT3_MA0757.1 5.509317130832797 - +chr1 73821569 73821582 ONECUT3_MA0757.1 5.755885369219698 - +chr1 74767823 74767836 ONECUT3_MA0757.1 5.458005226095075 + +chr1 75784713 75784726 ONECUT3_MA0757.1 5.992694173352280 - +chr1 75785392 75785405 ONECUT3_MA0757.1 5.589566299313576 + +chr1 75937779 75937792 ONECUT3_MA0757.1 6.704245205289308 - +chr1 76074995 76075008 ONECUT3_MA0757.1 8.888700597544009 - +chr1 76425840 76425853 ONECUT3_MA0757.1 6.940606146328498 + +chr1 77219711 77219724 ONECUT3_MA0757.1 7.062938606002120 - +chr1 77219720 77219733 ONECUT3_MA0757.1 7.899632900841491 - +chr1 77219724 77219737 ONECUT3_MA0757.1 7.899632900841491 - +chr1 77219728 77219741 ONECUT3_MA0757.1 7.899632900841491 - +chr1 77219732 77219745 ONECUT3_MA0757.1 7.899632900841491 - +chr1 77219736 77219749 ONECUT3_MA0757.1 7.899632900841491 - +chr1 77219740 77219753 ONECUT3_MA0757.1 7.899632900841491 - +chr1 77219744 77219757 ONECUT3_MA0757.1 6.799967318678723 - +chr1 77682745 77682758 ONECUT3_MA0757.1 7.995324051553668 + +chr1 77770811 77770824 ONECUT3_MA0757.1 5.840887742925275 + 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ONECUT3_MA0757.1 11.525120256359916 - +chr1 83501307 83501320 ONECUT3_MA0757.1 6.737918129505679 - +chr1 84506858 84506871 ONECUT3_MA0757.1 5.693295257319106 - +chr1 84599428 84599441 ONECUT3_MA0757.1 5.915247574064376 + +chr1 84945743 84945756 ONECUT3_MA0757.1 7.426286609426296 - +chr1 85335262 85335275 ONECUT3_MA0757.1 6.773359737733458 + +chr1 85756873 85756886 ONECUT3_MA0757.1 7.389102085267326 + +chr1 87463914 87463927 ONECUT3_MA0757.1 6.228140594007405 + +chr1 87588134 87588147 ONECUT3_MA0757.1 6.796862109161690 - +chr1 87813388 87813401 ONECUT3_MA0757.1 10.937939780891798 + +chr1 88399955 88399968 ONECUT3_MA0757.1 5.454627791968236 + +chr1 88399959 88399972 ONECUT3_MA0757.1 7.899632900841491 + +chr1 88399963 88399976 ONECUT3_MA0757.1 7.899632900841491 + +chr1 88399967 88399980 ONECUT3_MA0757.1 6.681256628635367 + +chr1 88701123 88701136 ONECUT3_MA0757.1 5.413198137183084 - +chr1 89429297 89429310 ONECUT3_MA0757.1 5.674698524985136 - +chr1 89670004 89670017 ONECUT3_MA0757.1 8.738424081972898 + +chr1 89719528 89719541 ONECUT3_MA0757.1 5.394094547576167 + +chr1 89822121 89822134 ONECUT3_MA0757.1 7.962435828395598 - +chr1 90509963 90509976 ONECUT3_MA0757.1 7.899632900841491 - +chr1 90509967 90509980 ONECUT3_MA0757.1 6.736771564319270 - +chr1 90510036 90510049 ONECUT3_MA0757.1 11.393506178874000 + +chr1 91055107 91055120 ONECUT3_MA0757.1 6.147148851784364 - +chr1 91055229 91055242 ONECUT3_MA0757.1 6.105510891085116 + +chr1 91803915 91803928 ONECUT3_MA0757.1 6.641344268266755 - +chr1 92538522 92538535 ONECUT3_MA0757.1 6.023059131490762 + +chr1 92563516 92563529 ONECUT3_MA0757.1 7.024773803901354 + +chr1 92584357 92584370 ONECUT3_MA0757.1 6.072211320192194 - +chr1 92584510 92584523 ONECUT3_MA0757.1 7.416049014972033 + +chr1 92785519 92785532 ONECUT3_MA0757.1 7.335244473769873 + +chr1 92962251 92962264 ONECUT3_MA0757.1 6.111549831713559 - +chr1 94411402 94411415 ONECUT3_MA0757.1 6.200801010535995 + +chr1 94962878 94962891 ONECUT3_MA0757.1 6.814183457013392 - 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101567668 101567681 ONECUT3_MA0757.1 8.128094216932530 + +chr1 101567724 101567737 ONECUT3_MA0757.1 6.705116577545581 - +chr1 104746666 104746679 ONECUT3_MA0757.1 8.141874615626909 - +chr1 104987261 104987274 ONECUT3_MA0757.1 6.384665983195956 - +chr1 106073005 106073018 ONECUT3_MA0757.1 6.796862109161690 - +chr1 106996417 106996430 ONECUT3_MA0757.1 6.451034113454508 - +chr1 107016133 107016146 ONECUT3_MA0757.1 7.223709038475991 + +chr1 107016314 107016327 ONECUT3_MA0757.1 5.605003390880258 + +chr1 107016961 107016974 ONECUT3_MA0757.1 12.473116587718225 - +chr1 107132543 107132556 ONECUT3_MA0757.1 6.886434538975748 - +chr1 107451752 107451765 ONECUT3_MA0757.1 6.859335111338726 - +chr1 107459610 107459623 ONECUT3_MA0757.1 6.016751278908281 - +chr1 107936221 107936234 ONECUT3_MA0757.1 6.391588136821515 + +chr1 108560687 108560700 ONECUT3_MA0757.1 5.776162396166836 - +chr1 108693082 108693095 ONECUT3_MA0757.1 6.158178355061528 - +chr1 108962881 108962894 ONECUT3_MA0757.1 6.354045955605633 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8.095804660218095 - +chr1 143185480 143185493 ONECUT3_MA0757.1 7.412139520935590 + +chr1 143186466 143186479 ONECUT3_MA0757.1 5.719906942421918 + +chr1 143232650 143232663 ONECUT3_MA0757.1 7.412139520935590 + +chr1 143250219 143250232 ONECUT3_MA0757.1 5.719906942421918 - +chr1 143266421 143266434 ONECUT3_MA0757.1 7.441445908661936 + +chr1 147085151 147085164 ONECUT3_MA0757.1 7.624115749355846 - +chr1 150067220 150067233 ONECUT3_MA0757.1 5.451761398580739 + +chr1 151458231 151458244 ONECUT3_MA0757.1 5.519031842407203 + +chr1 152460140 152460153 ONECUT3_MA0757.1 6.939092351178537 + +chr1 153671540 153671553 ONECUT3_MA0757.1 7.103296244086284 - +chr1 153671858 153671871 ONECUT3_MA0757.1 6.011789688734479 + +chr1 153671869 153671882 ONECUT3_MA0757.1 7.297235969393929 - +chr1 153977436 153977449 ONECUT3_MA0757.1 11.874774893902355 + +chr1 154791517 154791530 ONECUT3_MA0757.1 6.811383603861049 + +chr1 156225851 156225864 ONECUT3_MA0757.1 6.736771564319270 - +chr1 157598165 157598178 ONECUT3_MA0757.1 8.540590121469213 + +chr1 158204073 158204086 ONECUT3_MA0757.1 6.692235077857561 - +chr1 159010064 159010077 ONECUT3_MA0757.1 6.246769338607190 - +chr1 159121947 159121960 ONECUT3_MA0757.1 6.373580510378011 + +chr1 159121959 159121972 ONECUT3_MA0757.1 6.967338220604891 + +chr1 161706852 161706865 ONECUT3_MA0757.1 6.217197956200210 - +chr1 161962467 161962480 ONECUT3_MA0757.1 5.450442608156624 - +chr1 162497676 162497689 ONECUT3_MA0757.1 5.708593639902074 + +chr1 163321571 163321584 ONECUT3_MA0757.1 7.098117489023136 + +chr1 165686870 165686883 ONECUT3_MA0757.1 6.630489586876886 + +chr1 166839198 166839211 ONECUT3_MA0757.1 6.228076595564070 + +chr1 168467405 168467418 ONECUT3_MA0757.1 5.970123180669224 + +chr1 169692547 169692560 ONECUT3_MA0757.1 6.680693314441286 - +chr1 169915553 169915566 ONECUT3_MA0757.1 7.524179474468595 - +chr1 170932463 170932476 ONECUT3_MA0757.1 6.845617590186355 - +chr1 171188698 171188711 ONECUT3_MA0757.1 5.912852340530017 - +chr1 171188702 171188715 ONECUT3_MA0757.1 7.286364433623699 - +chr1 172343951 172343964 ONECUT3_MA0757.1 6.899733249106213 - +chr1 174998817 174998830 ONECUT3_MA0757.1 5.560524230017699 - +chr1 175209320 175209333 ONECUT3_MA0757.1 11.143273075955484 - +chr1 176208142 176208155 ONECUT3_MA0757.1 7.315850814802938 - +chr1 176897574 176897587 ONECUT3_MA0757.1 7.179537372063907 + +chr1 178067294 178067307 ONECUT3_MA0757.1 8.949240848014632 + +chr1 178412340 178412353 ONECUT3_MA0757.1 6.818410780154549 - +chr1 178581224 178581237 ONECUT3_MA0757.1 7.180878811628999 + +chr1 178606351 178606364 ONECUT3_MA0757.1 5.969110194985470 + +chr1 178684755 178684768 ONECUT3_MA0757.1 5.887988812253638 + +chr1 179034647 179034660 ONECUT3_MA0757.1 6.045360888125683 + +chr1 179034974 179034987 ONECUT3_MA0757.1 5.514772985793753 - +chr1 181504811 181504824 ONECUT3_MA0757.1 11.677261834370837 + +chr1 181505210 181505223 ONECUT3_MA0757.1 10.217662860569034 - +chr1 181514767 181514780 ONECUT3_MA0757.1 9.217876755183211 - +chr1 182428111 182428124 ONECUT3_MA0757.1 7.062938606002120 + +chr1 182588667 182588680 ONECUT3_MA0757.1 5.901929945367262 - +chr1 183071523 183071536 ONECUT3_MA0757.1 6.922538410364131 + +chr1 183471667 183471680 ONECUT3_MA0757.1 5.947714219842502 - +chr1 183842480 183842493 ONECUT3_MA0757.1 11.666081269078408 + +chr1 184866996 184867009 ONECUT3_MA0757.1 6.004888034624630 + +chr1 185637205 185637218 ONECUT3_MA0757.1 9.010989784897404 + +chr1 186178946 186178959 ONECUT3_MA0757.1 5.963878059707600 - +chr1 186559897 186559910 ONECUT3_MA0757.1 5.660443063241297 - +chr1 186595910 186595923 ONECUT3_MA0757.1 9.590921602248017 - +chr1 186865340 186865353 ONECUT3_MA0757.1 8.205593218699095 + diff --git a/demo/known_tfbs_chr1_hg38/OTX1_MA0711.1.bed b/demo/known_tfbs_chr1_hg38/OTX1_MA0711.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/OTX2_MA0712.1.bed b/demo/known_tfbs_chr1_hg38/OTX2_MA0712.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/PAX1_MA0779.1.bed b/demo/known_tfbs_chr1_hg38/PAX1_MA0779.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/PAX3_MA0780.1.bed b/demo/known_tfbs_chr1_hg38/PAX3_MA0780.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/PAX4_MA0068.2.bed b/demo/known_tfbs_chr1_hg38/PAX4_MA0068.2.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/PAX5_MA0014.3.bed b/demo/known_tfbs_chr1_hg38/PAX5_MA0014.3.bed new file mode 100644 index 0000000..b98d4b6 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/PAX5_MA0014.3.bed @@ -0,0 +1,239 @@ +chr1 1059630 1059641 PAX5_MA0014.3 7.694321576859354 + +chr1 1059643 1059654 PAX5_MA0014.3 7.820543078442499 + +chr1 1157854 1157865 PAX5_MA0014.3 7.842558071541410 - +chr1 1232006 1232017 PAX5_MA0014.3 7.958369331250196 + +chr1 1308563 1308574 PAX5_MA0014.3 10.625688715799763 + +chr1 1324585 1324596 PAX5_MA0014.3 8.756604522797945 + 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b/demo/known_tfbs_chr1_hg38/PAX9_MA0781.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/PBX1_MA0070.1.bed b/demo/known_tfbs_chr1_hg38/PBX1_MA0070.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/PBX2_MA1113.1.bed b/demo/known_tfbs_chr1_hg38/PBX2_MA1113.1.bed new file mode 100644 index 0000000..58f2ded --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/PBX2_MA1113.1.bed @@ -0,0 +1,236 @@ +chr1 1033220 1033231 PBX2_MA1113.1 9.688880666239992 - +chr1 2556208 2556219 PBX2_MA1113.1 8.369425804664568 - +chr1 3666436 3666447 PBX2_MA1113.1 7.990305371327334 + +chr1 6785382 6785393 PBX2_MA1113.1 8.349048054092586 + +chr1 8097393 8097404 PBX2_MA1113.1 9.443433827048228 + +chr1 8097559 8097570 PBX2_MA1113.1 7.708642466225901 - +chr1 8427579 8427590 PBX2_MA1113.1 8.117779838310286 - +chr1 8878792 8878803 PBX2_MA1113.1 7.550026732354903 - +chr1 9163055 9163066 PBX2_MA1113.1 9.410247619821179 - +chr1 11805876 11805887 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110011945 PBX2_MA1113.1 9.042927880715640 + +chr1 110338885 110338896 PBX2_MA1113.1 8.507584680321301 + +chr1 110339126 110339137 PBX2_MA1113.1 8.324858540252530 - +chr1 112466611 112466622 PBX2_MA1113.1 7.861727412340390 + +chr1 113784189 113784200 PBX2_MA1113.1 7.288221278463197 + +chr1 113784207 113784218 PBX2_MA1113.1 8.148131321669714 - +chr1 113930218 113930229 PBX2_MA1113.1 8.468108476999632 + +chr1 115649556 115649567 PBX2_MA1113.1 7.629592348600388 + +chr1 116504239 116504250 PBX2_MA1113.1 7.479820222844083 + +chr1 116827394 116827405 PBX2_MA1113.1 11.485640067485827 + +chr1 117001754 117001765 PBX2_MA1113.1 8.611261675137586 - +chr1 120558387 120558398 PBX2_MA1113.1 10.373831857110481 + +chr1 120844222 120844233 PBX2_MA1113.1 9.770536420739806 + +chr1 120844340 120844351 PBX2_MA1113.1 9.717979788834377 - +chr1 120851220 120851231 PBX2_MA1113.1 7.988558734834485 + +chr1 145958074 145958085 PBX2_MA1113.1 8.318460912553400 - +chr1 145979856 145979867 PBX2_MA1113.1 10.006070781989090 - +chr1 146038172 146038183 PBX2_MA1113.1 7.811066823059187 + +chr1 147084996 147085007 PBX2_MA1113.1 7.988558734834485 + +chr1 147243473 147243484 PBX2_MA1113.1 7.921584930310957 + +chr1 148335007 148335018 PBX2_MA1113.1 7.988558734834485 + +chr1 148335055 148335066 PBX2_MA1113.1 7.957025733875648 - +chr1 148402966 148402977 PBX2_MA1113.1 8.236946322612351 - +chr1 148952526 148952537 PBX2_MA1113.1 10.373831857110481 - +chr1 150515596 150515607 PBX2_MA1113.1 7.338105354142066 - +chr1 150515726 150515737 PBX2_MA1113.1 7.804299746638832 + +chr1 150629223 150629234 PBX2_MA1113.1 8.658728210364460 + +chr1 150697438 150697449 PBX2_MA1113.1 8.343351184136012 - +chr1 151156266 151156277 PBX2_MA1113.1 7.413221033374087 - +chr1 152908470 152908481 PBX2_MA1113.1 9.105765632793517 - +chr1 153791139 153791150 PBX2_MA1113.1 9.667014896723208 + +chr1 153946199 153946210 PBX2_MA1113.1 7.941714086921688 + +chr1 153958357 153958368 PBX2_MA1113.1 7.552865499868668 - +chr1 155050830 155050841 PBX2_MA1113.1 8.650201103291803 + +chr1 155085405 155085416 PBX2_MA1113.1 7.703942029113697 + +chr1 155085447 155085458 PBX2_MA1113.1 10.760899584407303 + +chr1 155227050 155227061 PBX2_MA1113.1 7.303327933035517 - +chr1 155308553 155308564 PBX2_MA1113.1 8.213658240663841 - +chr1 155946528 155946539 PBX2_MA1113.1 7.600381221193743 + +chr1 156225783 156225794 PBX2_MA1113.1 8.499116043649090 + +chr1 156338363 156338374 PBX2_MA1113.1 7.368993187176946 + +chr1 156457084 156457095 PBX2_MA1113.1 7.742610508302032 - +chr1 156500845 156500856 PBX2_MA1113.1 7.496975243820978 + +chr1 157562800 157562811 PBX2_MA1113.1 9.878662162013526 - +chr1 158830289 158830300 PBX2_MA1113.1 8.116964099312227 - +chr1 159076827 159076838 PBX2_MA1113.1 7.253991129335562 + +chr1 160032103 160032114 PBX2_MA1113.1 8.624014049909173 + +chr1 160262775 160262786 PBX2_MA1113.1 7.711385605798460 + +chr1 160712179 160712190 PBX2_MA1113.1 8.143176728749598 - +chr1 160767749 160767760 PBX2_MA1113.1 7.914978891131686 - +chr1 161132849 161132860 PBX2_MA1113.1 8.343351184136010 + +chr1 161133012 161133023 PBX2_MA1113.1 7.819824643481126 + +chr1 161185680 161185691 PBX2_MA1113.1 7.636731193981129 - +chr1 161186033 161186044 PBX2_MA1113.1 7.725524165153404 - +chr1 161225866 161225877 PBX2_MA1113.1 8.399478906088831 - +chr1 162530253 162530264 PBX2_MA1113.1 8.096660702634619 + +chr1 164558881 164558892 PBX2_MA1113.1 11.924951130279132 + +chr1 166975890 166975901 PBX2_MA1113.1 9.646536613495261 + +chr1 167499852 167499863 PBX2_MA1113.1 7.974300105803811 - +chr1 167500308 167500319 PBX2_MA1113.1 7.247296744555667 - +chr1 167721886 167721897 PBX2_MA1113.1 8.901419484038477 + +chr1 168145761 168145772 PBX2_MA1113.1 8.536708860406195 - +chr1 168179309 168179320 PBX2_MA1113.1 10.111950096309991 + +chr1 168179388 168179399 PBX2_MA1113.1 9.530010776561081 - +chr1 168510122 168510133 PBX2_MA1113.1 9.488094347126300 + +chr1 168554474 168554485 PBX2_MA1113.1 10.265729889310348 + +chr1 170881814 170881825 PBX2_MA1113.1 7.601491007537663 + +chr1 171314105 171314116 PBX2_MA1113.1 7.226420491278520 - +chr1 171606618 171606629 PBX2_MA1113.1 8.520529605146622 - +chr1 172394258 172394269 PBX2_MA1113.1 7.306128258519660 + +chr1 172819189 172819200 PBX2_MA1113.1 9.101181382577643 - +chr1 173715190 173715201 PBX2_MA1113.1 8.106389074377697 - +chr1 174799742 174799753 PBX2_MA1113.1 7.896539862606305 + +chr1 174874786 174874797 PBX2_MA1113.1 8.892450088113504 + +chr1 174999109 174999120 PBX2_MA1113.1 10.811330436403548 + +chr1 175023441 175023452 PBX2_MA1113.1 7.921584930310957 + +chr1 175390374 175390385 PBX2_MA1113.1 7.974300105803811 + +chr1 175598831 175598842 PBX2_MA1113.1 7.207203284927767 - +chr1 178605886 178605897 PBX2_MA1113.1 7.424862401237673 - +chr1 178608075 178608086 PBX2_MA1113.1 8.030609897706565 + +chr1 179081472 179081483 PBX2_MA1113.1 8.709123685306617 - +chr1 179081792 179081803 PBX2_MA1113.1 11.485640067485827 + +chr1 181514637 181514648 PBX2_MA1113.1 7.696289538800579 + +chr1 181514733 181514744 PBX2_MA1113.1 8.971243122929891 - +chr1 181936543 181936554 PBX2_MA1113.1 7.287540282404303 - +chr1 182249199 182249210 PBX2_MA1113.1 7.252023883087158 - +chr1 182426737 182426748 PBX2_MA1113.1 9.467731045153855 + +chr1 183472173 183472184 PBX2_MA1113.1 7.663919070571585 + +chr1 183472282 183472293 PBX2_MA1113.1 7.833275049239022 + +chr1 183989458 183989469 PBX2_MA1113.1 9.866673777310622 + +chr1 184164314 184164325 PBX2_MA1113.1 7.315897127962231 - diff --git a/demo/known_tfbs_chr1_hg38/PBX3_MA1114.1.bed b/demo/known_tfbs_chr1_hg38/PBX3_MA1114.1.bed new file mode 100644 index 0000000..e1ba133 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/PBX3_MA1114.1.bed @@ -0,0 +1,471 @@ +chr1 827311 827327 PBX3_MA1114.1 9.908375531368501 + +chr1 1033217 1033233 PBX3_MA1114.1 7.527659468251839 - +chr1 1116045 1116061 PBX3_MA1114.1 8.003549539057190 - +chr1 1231877 1231893 PBX3_MA1114.1 7.647953736855280 - +chr1 1324566 1324582 PBX3_MA1114.1 7.394580560378328 - +chr1 2547979 2547995 PBX3_MA1114.1 7.724895938989555 - +chr1 2548785 2548801 PBX3_MA1114.1 8.399799354548508 + +chr1 2555666 2555682 PBX3_MA1114.1 8.105329641831137 + +chr1 2556205 2556221 PBX3_MA1114.1 6.919359794498602 - +chr1 2577818 2577834 PBX3_MA1114.1 8.086128330324446 - +chr1 2578220 2578236 PBX3_MA1114.1 7.855839446894215 + +chr1 3665685 3665701 PBX3_MA1114.1 8.751207068096621 - +chr1 3665776 3665792 PBX3_MA1114.1 7.824609845710162 + +chr1 3677198 3677214 PBX3_MA1114.1 7.139563658313135 + +chr1 3857122 3857138 PBX3_MA1114.1 7.562662632210074 + +chr1 6026910 6026926 PBX3_MA1114.1 7.815976778264702 + +chr1 6603121 6603137 PBX3_MA1114.1 7.227120635427678 + +chr1 6785380 6785396 PBX3_MA1114.1 10.208901331782238 + +chr1 7783830 7783846 PBX3_MA1114.1 8.265709162804193 - +chr1 7961968 7961984 PBX3_MA1114.1 7.214080383854339 + +chr1 8878789 8878805 PBX3_MA1114.1 8.893181002768531 - +chr1 9037593 9037609 PBX3_MA1114.1 7.613926516422834 + +chr1 9163052 9163068 PBX3_MA1114.1 8.006826230561305 - +chr1 9234935 9234951 PBX3_MA1114.1 8.824871227356327 + +chr1 9539220 9539236 PBX3_MA1114.1 8.536111056744071 - +chr1 10399124 10399140 PBX3_MA1114.1 7.907047862926087 + +chr1 10986286 10986302 PBX3_MA1114.1 8.607612216384187 - +chr1 11059835 11059851 PBX3_MA1114.1 7.355470422120213 + +chr1 11805873 11805889 PBX3_MA1114.1 10.090847045035884 - +chr1 11909451 11909467 PBX3_MA1114.1 8.192199934626853 + +chr1 12019449 12019465 PBX3_MA1114.1 7.752297175316414 - +chr1 12052311 12052327 PBX3_MA1114.1 7.921541193168864 - +chr1 12162062 12162078 PBX3_MA1114.1 7.084940709660292 + +chr1 12435800 12435816 PBX3_MA1114.1 7.711127987596846 + +chr1 14599396 14599412 PBX3_MA1114.1 9.238435104975135 - +chr1 15409884 15409900 PBX3_MA1114.1 7.173771609997651 + +chr1 15848149 15848165 PBX3_MA1114.1 10.826184253644961 + +chr1 15966131 15966147 PBX3_MA1114.1 8.016323887295327 + +chr1 15966264 15966280 PBX3_MA1114.1 7.823708392074680 - +chr1 16236800 16236816 PBX3_MA1114.1 8.715285111723189 + +chr1 16367952 16367968 PBX3_MA1114.1 9.404788079433837 - +chr1 16514561 16514577 PBX3_MA1114.1 9.744716627574560 - +chr1 16544639 16544655 PBX3_MA1114.1 7.826700185101586 - +chr1 16613761 16613777 PBX3_MA1114.1 8.232976786240148 - +chr1 16644631 16644647 PBX3_MA1114.1 8.348276248258468 - +chr1 16728634 16728650 PBX3_MA1114.1 7.826700185101584 + +chr1 16904838 16904854 PBX3_MA1114.1 7.986058476921928 + +chr1 17054273 17054289 PBX3_MA1114.1 8.050327143194615 + +chr1 18902834 18902850 PBX3_MA1114.1 7.316506716249561 + +chr1 19882229 19882245 PBX3_MA1114.1 10.735934802780275 - +chr1 21293742 21293758 PBX3_MA1114.1 9.133623066895360 + +chr1 21334262 21334278 PBX3_MA1114.1 7.606746322967310 - +chr1 21783080 21783096 PBX3_MA1114.1 9.083315426770083 - +chr1 21783678 21783694 PBX3_MA1114.1 7.296600917810856 - +chr1 22052543 22052559 PBX3_MA1114.1 6.943514938646898 + +chr1 23368424 23368440 PBX3_MA1114.1 7.784678865328511 - +chr1 23800834 23800850 PBX3_MA1114.1 7.122632926090668 - +chr1 23980868 23980884 PBX3_MA1114.1 7.899683635401967 - +chr1 24415727 24415743 PBX3_MA1114.1 9.745429510637750 + +chr1 25239938 25239954 PBX3_MA1114.1 7.577246575918778 + +chr1 25247241 25247257 PBX3_MA1114.1 7.200145176901506 - +chr1 25338005 25338021 PBX3_MA1114.1 7.873321677803494 - +chr1 25550023 25550039 PBX3_MA1114.1 7.765195291935756 + +chr1 26279814 26279830 PBX3_MA1114.1 7.178916641301077 - +chr1 26865283 26865299 PBX3_MA1114.1 7.402173696808852 + +chr1 26865287 26865303 PBX3_MA1114.1 8.680229437618213 + +chr1 27155143 27155159 PBX3_MA1114.1 8.396900789462801 - +chr1 27660131 27660147 PBX3_MA1114.1 7.037558266537442 - +chr1 27830890 27830906 PBX3_MA1114.1 8.345667134057443 + +chr1 28506227 28506243 PBX3_MA1114.1 9.785604257162062 - +chr1 28553204 28553220 PBX3_MA1114.1 7.379550394702559 + +chr1 28642840 28642856 PBX3_MA1114.1 7.583378034555958 - +chr1 28643247 28643263 PBX3_MA1114.1 9.944373771224752 + +chr1 28648614 28648630 PBX3_MA1114.1 7.110032570147558 + +chr1 28669847 28669863 PBX3_MA1114.1 7.320877497311818 + +chr1 28737298 28737314 PBX3_MA1114.1 7.666876384705295 - +chr1 29182039 29182055 PBX3_MA1114.1 9.053684365458952 + +chr1 30719118 30719134 PBX3_MA1114.1 6.930971948116451 + +chr1 31065685 31065701 PBX3_MA1114.1 7.118047524064838 - +chr1 31549685 31549701 PBX3_MA1114.1 7.490848239760494 - +chr1 31549696 31549712 PBX3_MA1114.1 11.383556122198737 - +chr1 31644967 31644983 PBX3_MA1114.1 9.618238192860785 - +chr1 31788692 31788708 PBX3_MA1114.1 7.292340137350875 - +chr1 32627925 32627941 PBX3_MA1114.1 8.044005882850492 - +chr1 32817542 32817558 PBX3_MA1114.1 8.759580483548969 - +chr1 33036721 33036737 PBX3_MA1114.1 6.975135550169862 - +chr1 35192640 35192656 PBX3_MA1114.1 7.037096255094056 + +chr1 35193285 35193301 PBX3_MA1114.1 7.204105326315602 + +chr1 36149451 36149467 PBX3_MA1114.1 7.187718647198036 - +chr1 36306976 36306992 PBX3_MA1114.1 7.559196556464137 + +chr1 36463986 36464002 PBX3_MA1114.1 7.606060446407350 - +chr1 37692079 37692095 PBX3_MA1114.1 6.916100279323038 - +chr1 37692083 37692099 PBX3_MA1114.1 9.406012357288635 - +chr1 37692124 37692140 PBX3_MA1114.1 6.948632108894366 + +chr1 39598675 39598691 PBX3_MA1114.1 8.146269044948708 + +chr1 39666970 39666986 PBX3_MA1114.1 8.447619124827467 - +chr1 40161643 40161659 PBX3_MA1114.1 7.123819622586126 + +chr1 40232582 40232598 PBX3_MA1114.1 8.910978979818598 - +chr1 40232735 40232751 PBX3_MA1114.1 8.607612216384187 - +chr1 40373893 40373909 PBX3_MA1114.1 7.173195339510269 - +chr1 41241902 41241918 PBX3_MA1114.1 7.256079989849973 + +chr1 41662667 41662683 PBX3_MA1114.1 6.943804518056915 + +chr1 41662679 41662695 PBX3_MA1114.1 8.030131376299996 - +chr1 41699100 41699116 PBX3_MA1114.1 7.111874487202951 - +chr1 41729004 41729020 PBX3_MA1114.1 7.114891195881448 - +chr1 41955714 41955730 PBX3_MA1114.1 7.088790662216237 - +chr1 42035927 42035943 PBX3_MA1114.1 8.538181541465656 + +chr1 42682340 42682356 PBX3_MA1114.1 7.534411212197220 + +chr1 42767109 42767125 PBX3_MA1114.1 7.556492292117140 - +chr1 42931797 42931813 PBX3_MA1114.1 11.909790197502909 + +chr1 42931972 42931988 PBX3_MA1114.1 8.157308808375369 + +chr1 43946953 43946969 PBX3_MA1114.1 7.996281525695193 - +chr1 44730624 44730640 PBX3_MA1114.1 9.151634825176485 + +chr1 44819576 44819592 PBX3_MA1114.1 9.582672303267120 - +chr1 44819667 44819683 PBX3_MA1114.1 7.437323136007828 - +chr1 44986592 44986608 PBX3_MA1114.1 10.561654628876227 + +chr1 45011712 45011728 PBX3_MA1114.1 7.592461285075252 - +chr1 45206358 45206374 PBX3_MA1114.1 7.670586223148815 + +chr1 45206362 45206378 PBX3_MA1114.1 7.295794890253696 + +chr1 45327452 45327468 PBX3_MA1114.1 8.188456161177676 - +chr1 45543923 45543939 PBX3_MA1114.1 7.658581782926252 + +chr1 45750699 45750715 PBX3_MA1114.1 8.160345498404068 + +chr1 46133252 46133268 PBX3_MA1114.1 8.335990438490027 + +chr1 46247789 46247805 PBX3_MA1114.1 7.009463434994423 + +chr1 46302298 46302314 PBX3_MA1114.1 8.897710599375532 - +chr1 46302962 46302978 PBX3_MA1114.1 11.069504027317556 - +chr1 46332026 46332042 PBX3_MA1114.1 8.552396733408479 - +chr1 47351610 47351626 PBX3_MA1114.1 7.158406751309675 + +chr1 50977253 50977269 PBX3_MA1114.1 7.032483422615911 + +chr1 50977728 50977744 PBX3_MA1114.1 7.031454085446317 + +chr1 50977819 50977835 PBX3_MA1114.1 8.286876144038066 - +chr1 51501510 51501526 PBX3_MA1114.1 8.213583498038570 - +chr1 51879184 51879200 PBX3_MA1114.1 9.267927224653684 - +chr1 52056901 52056917 PBX3_MA1114.1 8.206348373503058 + +chr1 52365823 52365839 PBX3_MA1114.1 7.556726320561278 + +chr1 52366532 52366548 PBX3_MA1114.1 7.858511465044907 + +chr1 52703126 52703142 PBX3_MA1114.1 8.133136501942714 + +chr1 53196736 53196752 PBX3_MA1114.1 8.536068920157993 - +chr1 53197155 53197171 PBX3_MA1114.1 8.585808317710493 - +chr1 53326858 53326874 PBX3_MA1114.1 8.464796291950929 - +chr1 53890139 53890155 PBX3_MA1114.1 7.017095889093003 - +chr1 54715620 54715636 PBX3_MA1114.1 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POU5F1_MA1115.1 10.438237618431264 + +chr1 200154370 200154380 POU5F1_MA1115.1 8.792197770004778 + +chr1 200654813 200654823 POU5F1_MA1115.1 9.494335131200025 - +chr1 201955569 201955579 POU5F1_MA1115.1 9.004439768070160 - +chr1 202010457 202010467 POU5F1_MA1115.1 10.070844274618157 + +chr1 202341718 202341728 POU5F1_MA1115.1 8.719243017416623 + +chr1 203007061 203007071 POU5F1_MA1115.1 7.596235954463165 - +chr1 203754757 203754767 POU5F1_MA1115.1 10.420638454452760 + +chr1 203764847 203764857 POU5F1_MA1115.1 7.448846694410730 - +chr1 204506994 204507004 POU5F1_MA1115.1 7.394141968489365 - +chr1 206739547 206739557 POU5F1_MA1115.1 9.340308797030426 + +chr1 206739569 206739579 POU5F1_MA1115.1 10.414307706553837 + +chr1 206924875 206924885 POU5F1_MA1115.1 8.551462673000822 - +chr1 207579651 207579661 POU5F1_MA1115.1 8.128757057312114 - +chr1 207822307 207822317 POU5F1_MA1115.1 8.429063019836592 + +chr1 207822738 207822748 POU5F1_MA1115.1 10.175323342059153 + +chr1 209039693 209039703 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28648876 POU6F2_MA0793.1 7.816537425876248 + +chr1 35506370 35506379 POU6F2_MA0793.1 9.580134798850841 - +chr1 36149943 36149952 POU6F2_MA0793.1 8.080141681727619 - +chr1 38816076 38816085 POU6F2_MA0793.1 7.562192251359704 + +chr1 39196410 39196419 POU6F2_MA0793.1 8.419483235302568 + +chr1 40665839 40665848 POU6F2_MA0793.1 9.052626777253510 - +chr1 40699529 40699538 POU6F2_MA0793.1 9.580134798850841 + +chr1 41955733 41955742 POU6F2_MA0793.1 9.704489248994152 - +chr1 43853612 43853621 POU6F2_MA0793.1 8.385829498672875 - +chr1 44030558 44030567 POU6F2_MA0793.1 7.615020354397568 - +chr1 45011786 45011795 POU6F2_MA0793.1 8.173154978516093 + +chr1 53327438 53327447 POU6F2_MA0793.1 8.729702165883996 + +chr1 56330384 56330393 POU6F2_MA0793.1 8.717581026402710 - +chr1 57168087 57168096 POU6F2_MA0793.1 7.603862905719470 + +chr1 58578357 58578366 POU6F2_MA0793.1 9.010842726054214 - +chr1 59266541 59266550 POU6F2_MA0793.1 7.534903698578165 - +chr1 59266894 59266903 POU6F2_MA0793.1 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75991580 POU6F2_MA0793.1 7.642671871616023 + +chr1 76331089 76331098 POU6F2_MA0793.1 7.589650987550486 - +chr1 77926926 77926935 POU6F2_MA0793.1 7.655538952942391 - +chr1 77978525 77978534 POU6F2_MA0793.1 8.861912115813340 + +chr1 78004715 78004724 POU6F2_MA0793.1 8.419483235302568 - +chr1 78277582 78277591 POU6F2_MA0793.1 9.636130768219120 - +chr1 78655961 78655970 POU6F2_MA0793.1 8.796146346319077 - +chr1 79519612 79519621 POU6F2_MA0793.1 8.400041416841859 - +chr1 80656085 80656094 POU6F2_MA0793.1 8.246898443694036 + +chr1 81548981 81548990 POU6F2_MA0793.1 9.948942410081312 + +chr1 83501104 83501113 POU6F2_MA0793.1 7.642671871616023 + +chr1 84152723 84152732 POU6F2_MA0793.1 8.483334704456881 - +chr1 84271503 84271512 POU6F2_MA0793.1 8.493104504582869 - +chr1 87058281 87058290 POU6F2_MA0793.1 7.923812431786242 + +chr1 88401265 88401274 POU6F2_MA0793.1 7.589650987550486 - +chr1 89287234 89287243 POU6F2_MA0793.1 7.589650987550484 + +chr1 89363454 89363463 POU6F2_MA0793.1 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148334769 POU6F2_MA0793.1 7.576906102121758 - +chr1 150562498 150562507 POU6F2_MA0793.1 8.087997181513654 + +chr1 151071376 151071385 POU6F2_MA0793.1 8.087997181513655 - +chr1 152908203 152908212 POU6F2_MA0793.1 7.506196281991427 - +chr1 159012716 159012725 POU6F2_MA0793.1 7.640757571276072 - +chr1 159239838 159239847 POU6F2_MA0793.1 8.156144453392120 - diff --git a/demo/known_tfbs_chr1_hg38/PPARA_RXRA_MA1148.1.bed b/demo/known_tfbs_chr1_hg38/PPARA_RXRA_MA1148.1.bed new file mode 100644 index 0000000..b9f92bd --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/PPARA_RXRA_MA1148.1.bed @@ -0,0 +1,219 @@ +chr1 10386 10403 PPARA_RXRA_MA1148.1 8.484626609760872 - +chr1 1399688 1399705 PPARA_RXRA_MA1148.1 7.984155676391270 + +chr1 1407332 1407349 PPARA_RXRA_MA1148.1 7.972108560109499 + +chr1 1659037 1659054 PPARA_RXRA_MA1148.1 8.020052074345534 - +chr1 1724363 1724380 PPARA_RXRA_MA1148.1 10.603204092314781 - +chr1 3666647 3666664 PPARA_RXRA_MA1148.1 11.490398550902094 - +chr1 3676747 3676764 PPARA_RXRA_MA1148.1 7.407609196956407 + +chr1 3676937 3676954 PPARA_RXRA_MA1148.1 7.271409868983180 - +chr1 3910905 3910922 PPARA_RXRA_MA1148.1 7.966742049374542 - +chr1 6624920 6624937 PPARA_RXRA_MA1148.1 9.864891211170246 + +chr1 6701805 6701822 PPARA_RXRA_MA1148.1 7.376763917506980 - +chr1 6861408 6861425 PPARA_RXRA_MA1148.1 8.226973875189762 - +chr1 6861436 6861453 PPARA_RXRA_MA1148.1 7.345199435764609 - +chr1 8097448 8097465 PPARA_RXRA_MA1148.1 9.558783581055266 + +chr1 8097464 8097481 PPARA_RXRA_MA1148.1 8.462153723602190 + +chr1 8283369 8283386 PPARA_RXRA_MA1148.1 7.757284190963206 - +chr1 8604278 8604295 PPARA_RXRA_MA1148.1 7.018325734107682 + +chr1 8604458 8604475 PPARA_RXRA_MA1148.1 7.024112779673180 + +chr1 8878338 8878355 PPARA_RXRA_MA1148.1 8.909674753658019 - +chr1 9413253 9413270 PPARA_RXRA_MA1148.1 9.380521820649772 - +chr1 9942745 9942762 PPARA_RXRA_MA1148.1 7.384714572304288 + +chr1 10210701 10210718 PPARA_RXRA_MA1148.1 7.416693996994422 - +chr1 10475113 10475130 PPARA_RXRA_MA1148.1 8.247532244752648 - +chr1 12047656 12047673 PPARA_RXRA_MA1148.1 7.567889282634654 + +chr1 12230685 12230702 PPARA_RXRA_MA1148.1 7.194450947743697 - +chr1 12230686 12230703 PPARA_RXRA_MA1148.1 7.070752227351980 - +chr1 13731224 13731241 PPARA_RXRA_MA1148.1 8.188644510193852 - +chr1 15617713 15617730 PPARA_RXRA_MA1148.1 11.492713347831501 - +chr1 16514080 16514097 PPARA_RXRA_MA1148.1 7.914050558302643 - +chr1 16896169 16896186 PPARA_RXRA_MA1148.1 7.223148103524366 + +chr1 17141799 17141816 PPARA_RXRA_MA1148.1 7.242838850839226 + +chr1 19209871 19209888 PPARA_RXRA_MA1148.1 8.708032363973132 + +chr1 19800096 19800113 PPARA_RXRA_MA1148.1 9.094076172519197 - +chr1 22451706 22451723 PPARA_RXRA_MA1148.1 8.528197692535594 + +chr1 25233203 25233220 PPARA_RXRA_MA1148.1 7.842112858754215 - +chr1 26542535 26542552 PPARA_RXRA_MA1148.1 7.726803308289076 - +chr1 26621274 26621291 PPARA_RXRA_MA1148.1 7.610131748579700 - +chr1 28144648 28144665 PPARA_RXRA_MA1148.1 7.088402669132280 - 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PPARA_RXRA_MA1148.1 7.074135580699787 + +chr1 39996151 39996168 PPARA_RXRA_MA1148.1 8.515331115334291 - +chr1 41574416 41574433 PPARA_RXRA_MA1148.1 7.445291901607304 - +chr1 41751233 41751250 PPARA_RXRA_MA1148.1 7.862557264940250 + +chr1 42456098 42456115 PPARA_RXRA_MA1148.1 7.072385807555900 + +chr1 42658196 42658213 PPARA_RXRA_MA1148.1 7.981718282652735 - +chr1 42924515 42924532 PPARA_RXRA_MA1148.1 7.650489281268596 - +chr1 42931387 42931404 PPARA_RXRA_MA1148.1 7.277812588762396 + +chr1 43389904 43389921 PPARA_RXRA_MA1148.1 9.496760320577026 + +chr1 43974613 43974630 PPARA_RXRA_MA1148.1 7.098247352204146 + +chr1 44213712 44213729 PPARA_RXRA_MA1148.1 10.040149135513049 - +chr1 44631923 44631940 PPARA_RXRA_MA1148.1 11.005882039997825 - +chr1 45686780 45686797 PPARA_RXRA_MA1148.1 9.297126828667752 - +chr1 46616311 46616328 PPARA_RXRA_MA1148.1 9.102742468402756 + +chr1 47334500 47334517 PPARA_RXRA_MA1148.1 9.547997344261276 + +chr1 47334779 47334796 PPARA_RXRA_MA1148.1 7.104375465908282 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173195583 PRDM1_MA0508.2 9.564150025496687 - +chr1 173298050 173298059 PRDM1_MA0508.2 8.111787636162543 + +chr1 173355633 173355642 PRDM1_MA0508.2 10.972093826522428 - +chr1 173355639 173355648 PRDM1_MA0508.2 9.209284983380273 - +chr1 173715061 173715070 PRDM1_MA0508.2 8.508731369829082 - +chr1 173715500 173715509 PRDM1_MA0508.2 8.283001327772062 + +chr1 174005089 174005098 PRDM1_MA0508.2 8.645747798652764 + +chr1 174815536 174815545 PRDM1_MA0508.2 9.058214401266596 + +chr1 174999530 174999539 PRDM1_MA0508.2 8.645747798652762 - +chr1 175023933 175023942 PRDM1_MA0508.2 7.611791802405339 - +chr1 175142105 175142114 PRDM1_MA0508.2 7.652916324215226 + +chr1 175209593 175209602 PRDM1_MA0508.2 7.848531302506561 + +chr1 175390384 175390393 PRDM1_MA0508.2 8.570421767608680 - +chr1 175390717 175390726 PRDM1_MA0508.2 10.157031298408668 + +chr1 176193048 176193057 PRDM1_MA0508.2 8.064486143378591 + +chr1 176375187 176375196 PRDM1_MA0508.2 8.570421767608680 - +chr1 178067319 178067328 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191887163 PRDM1_MA0508.2 9.773486017505434 - +chr1 191887160 191887169 PRDM1_MA0508.2 10.157031298408668 - +chr1 192517259 192517268 PRDM1_MA0508.2 7.848531302506560 - +chr1 192546064 192546073 PRDM1_MA0508.2 7.848531302506560 - diff --git a/demo/known_tfbs_chr1_hg38/PROP1_MA0715.1.bed b/demo/known_tfbs_chr1_hg38/PROP1_MA0715.1.bed new file mode 100644 index 0000000..16c284d --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/PROP1_MA0715.1.bed @@ -0,0 +1,347 @@ +chr1 779251 779261 PROP1_MA0715.1 6.751456637063711 + +chr1 3666306 3666316 PROP1_MA0715.1 8.196973433746770 + +chr1 3666306 3666316 PROP1_MA0715.1 7.972494961259233 - +chr1 8283326 8283336 PROP1_MA0715.1 6.825931983287402 + +chr1 8283326 8283336 PROP1_MA0715.1 6.566079498044896 - +chr1 9942720 9942730 PROP1_MA0715.1 7.753480663605270 + +chr1 9942720 9942730 PROP1_MA0715.1 8.014566813580291 - +chr1 9942809 9942819 PROP1_MA0715.1 7.877365786335217 + +chr1 9942809 9942819 PROP1_MA0715.1 8.110155250401506 - +chr1 12040100 12040110 PROP1_MA0715.1 6.444362780777061 + +chr1 12040104 12040114 PROP1_MA0715.1 6.444362780777061 + +chr1 28506190 28506200 PROP1_MA0715.1 6.444362780777062 - +chr1 28927431 28927441 PROP1_MA0715.1 7.953179525216250 + +chr1 28927431 28927441 PROP1_MA0715.1 7.116052022156506 - +chr1 30744032 30744042 PROP1_MA0715.1 7.100028865066070 + +chr1 33461151 33461161 PROP1_MA0715.1 8.448167337647519 - +chr1 36023389 36023399 PROP1_MA0715.1 8.171542538765546 + +chr1 36023389 36023399 PROP1_MA0715.1 8.514794427783981 - +chr1 39196413 39196423 PROP1_MA0715.1 10.352141445425413 + +chr1 39196413 39196423 PROP1_MA0715.1 10.526981811336430 - +chr1 40628606 40628616 PROP1_MA0715.1 8.700704386831948 - +chr1 44730656 44730666 PROP1_MA0715.1 10.578275072829260 + +chr1 44730656 44730666 PROP1_MA0715.1 8.272703549570368 - +chr1 50977585 50977595 PROP1_MA0715.1 6.706411332630494 + +chr1 51268596 51268606 PROP1_MA0715.1 6.825931983287402 + +chr1 51268596 51268606 PROP1_MA0715.1 6.566079498044896 - +chr1 51518616 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a/demo/known_tfbs_chr1_hg38/Phox2b_MA0681.1.bed b/demo/known_tfbs_chr1_hg38/Phox2b_MA0681.1.bed new file mode 100644 index 0000000..3280e66 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/Phox2b_MA0681.1.bed @@ -0,0 +1,116 @@ +chr1 779251 779261 Phox2b_MA0681.1 7.534774187193571 - +chr1 3666306 3666316 Phox2b_MA0681.1 8.032464201853621 - +chr1 8097431 8097441 Phox2b_MA0681.1 7.866959209615462 - +chr1 9942720 9942730 Phox2b_MA0681.1 8.122604631727539 + +chr1 9942720 9942730 Phox2b_MA0681.1 7.117963016615796 - +chr1 13713386 13713396 Phox2b_MA0681.1 7.226809809644168 + +chr1 28648865 28648875 Phox2b_MA0681.1 9.024318150567394 + +chr1 30744032 30744042 Phox2b_MA0681.1 9.108044581488711 - +chr1 33461151 33461161 Phox2b_MA0681.1 10.977036895977237 - +chr1 36023389 36023399 Phox2b_MA0681.1 8.295306369597682 - +chr1 39196413 39196423 Phox2b_MA0681.1 11.321603313761589 - +chr1 40628606 40628616 Phox2b_MA0681.1 7.927593626661994 + +chr1 40628606 40628616 Phox2b_MA0681.1 7.649053906237373 - +chr1 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40186153 40186167 Pou5f1_Sox2_MA0142.1 6.923747614817680 - +chr1 40532247 40532261 Pou5f1_Sox2_MA0142.1 6.859663847981958 - +chr1 41623435 41623449 Pou5f1_Sox2_MA0142.1 7.627811453119905 - +chr1 43358554 43358568 Pou5f1_Sox2_MA0142.1 7.716474200544148 - +chr1 43853887 43853901 Pou5f1_Sox2_MA0142.1 7.373149267275098 - +chr1 44632523 44632537 Pou5f1_Sox2_MA0142.1 7.186620809991625 - +chr1 44722063 44722077 Pou5f1_Sox2_MA0142.1 8.592145578312197 + +chr1 44722115 44722129 Pou5f1_Sox2_MA0142.1 7.286400315998151 + +chr1 44820199 44820213 Pou5f1_Sox2_MA0142.1 9.554441274835824 + +chr1 45394093 45394107 Pou5f1_Sox2_MA0142.1 6.766755373023302 + +chr1 45544224 45544238 Pou5f1_Sox2_MA0142.1 6.956604143178835 - +chr1 45686500 45686514 Pou5f1_Sox2_MA0142.1 7.451599901953036 - +chr1 46616757 46616771 Pou5f1_Sox2_MA0142.1 7.066902922869881 + +chr1 48498452 48498466 Pou5f1_Sox2_MA0142.1 6.725798599322125 + +chr1 50724625 50724639 Pou5f1_Sox2_MA0142.1 7.727883056540183 - +chr1 51235165 51235179 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Pparg_Rxra_MA0065.2 7.130307339472472 - +chr1 15617714 15617728 Pparg_Rxra_MA0065.2 10.983020765821404 - +chr1 15835554 15835568 Pparg_Rxra_MA0065.2 7.252745991919711 - +chr1 15835561 15835575 Pparg_Rxra_MA0065.2 7.575668761916257 - +chr1 15847891 15847905 Pparg_Rxra_MA0065.2 7.427769222470580 + +chr1 15966521 15966535 Pparg_Rxra_MA0065.2 7.654167323239364 - +chr1 15975656 15975670 Pparg_Rxra_MA0065.2 7.324115737064359 + +chr1 16236843 16236857 Pparg_Rxra_MA0065.2 8.854848323395588 - +chr1 16513787 16513801 Pparg_Rxra_MA0065.2 7.444538396299079 + +chr1 16896464 16896478 Pparg_Rxra_MA0065.2 7.444538396299079 - +chr1 17141766 17141780 Pparg_Rxra_MA0065.2 8.937414549057847 + +chr1 18902803 18902817 Pparg_Rxra_MA0065.2 7.178296103402480 + +chr1 18927390 18927404 Pparg_Rxra_MA0065.2 8.175220975914193 + +chr1 18927407 18927421 Pparg_Rxra_MA0065.2 7.947091624193747 + +chr1 19209873 19209887 Pparg_Rxra_MA0065.2 8.227089491182964 + +chr1 19251864 19251878 Pparg_Rxra_MA0065.2 8.415691022396334 + 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Pparg_Rxra_MA0065.2 7.193663096479462 + +chr1 222814716 222814730 Pparg_Rxra_MA0065.2 10.422426515064322 + +chr1 222814882 222814896 Pparg_Rxra_MA0065.2 10.245254245924357 - +chr1 223143395 223143409 Pparg_Rxra_MA0065.2 7.544683760576626 + +chr1 223190347 223190361 Pparg_Rxra_MA0065.2 8.081997132228327 - +chr1 223190363 223190377 Pparg_Rxra_MA0065.2 8.333421708970057 - +chr1 223550850 223550864 Pparg_Rxra_MA0065.2 11.532552954530907 - +chr1 223712952 223712966 Pparg_Rxra_MA0065.2 7.342412489926184 + diff --git a/demo/known_tfbs_chr1_hg38/Prrx2_MA0075.2.bed b/demo/known_tfbs_chr1_hg38/Prrx2_MA0075.2.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/RARA_MA0729.1.bed b/demo/known_tfbs_chr1_hg38/RARA_MA0729.1.bed new file mode 100644 index 0000000..f04f6e0 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/RARA_MA0729.1.bed @@ -0,0 +1,117 @@ +chr1 1274140 1274157 RARA_MA0729.1 -8.454998506391128 - +chr1 1308340 1308357 RARA_MA0729.1 -8.730552258619358 - 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13713383 13713400 RARA_MA0729.1 -0.066768248521092 - +chr1 14599434 14599451 RARA_MA0729.1 -10.615163498383046 + +chr1 15584676 15584693 RARA_MA0729.1 -6.281666283897831 - +chr1 15966298 15966315 RARA_MA0729.1 -11.757488078292038 + +chr1 16367262 16367279 RARA_MA0729.1 -6.059105522484314 + +chr1 16441133 16441150 RARA_MA0729.1 -9.485137502452309 + +chr1 16544925 16544942 RARA_MA0729.1 -12.940052471278019 - +chr1 16544933 16544950 RARA_MA0729.1 -5.930285419495520 - +chr1 16728338 16728355 RARA_MA0729.1 -5.930285419495523 + +chr1 16728346 16728363 RARA_MA0729.1 -12.940052471278019 + +chr1 16905179 16905196 RARA_MA0729.1 -11.052659449429486 + +chr1 19210567 19210584 RARA_MA0729.1 -8.193272287836969 + +chr1 23778482 23778499 RARA_MA0729.1 -10.962797093641999 + +chr1 24965239 24965256 RARA_MA0729.1 -11.066284924546029 + +chr1 25859278 25859295 RARA_MA0729.1 -13.351553741548434 - +chr1 26621371 26621388 RARA_MA0729.1 -1.646041754040881 - +chr1 26865760 26865777 RARA_MA0729.1 -10.177981024025655 + +chr1 27626171 27626188 RARA_MA0729.1 -0.023733900273195 + +chr1 27626550 27626567 RARA_MA0729.1 -12.963831988029311 - +chr1 28518971 28518988 RARA_MA0729.1 -12.473553257568165 - +chr1 28669437 28669454 RARA_MA0729.1 -11.547783631053763 + +chr1 31549493 31549510 RARA_MA0729.1 -7.557545264953763 + +chr1 31606007 31606024 RARA_MA0729.1 -9.651097482396910 + +chr1 31788783 31788800 RARA_MA0729.1 -12.245362385422562 + +chr1 32014307 32014324 RARA_MA0729.1 -13.003183184037425 - +chr1 36149749 36149766 RARA_MA0729.1 -9.114240503454230 - +chr1 36223939 36223956 RARA_MA0729.1 -5.689502063491157 + +chr1 36464659 36464676 RARA_MA0729.1 -12.405729060496000 - +chr1 39598573 39598590 RARA_MA0729.1 -11.416514308309651 - +chr1 39955361 39955378 RARA_MA0729.1 -12.695273662962041 - +chr1 40862659 40862676 RARA_MA0729.1 -12.312275781550747 + +chr1 41751276 41751293 RARA_MA0729.1 -12.734581834330506 - +chr1 41752020 41752037 RARA_MA0729.1 5.119605030007485 + +chr1 43707331 43707348 RARA_MA0729.1 -8.766846462741499 - +chr1 44674281 44674298 RARA_MA0729.1 -10.841878713420702 + +chr1 44730572 44730589 RARA_MA0729.1 0.936548056993329 + +chr1 44800329 44800346 RARA_MA0729.1 -3.134150966577999 + +chr1 45052906 45052923 RARA_MA0729.1 -9.618235426644379 + +chr1 45491088 45491105 RARA_MA0729.1 -5.978544072248369 + +chr1 47334776 47334793 RARA_MA0729.1 -11.125848376100585 - +chr1 47437774 47437791 RARA_MA0729.1 -9.331020026417558 + +chr1 48730469 48730486 RARA_MA0729.1 -12.953108189339387 + +chr1 51285166 51285183 RARA_MA0729.1 -12.803137814691873 - +chr1 51285457 51285474 RARA_MA0729.1 -6.686419311289713 + +chr1 51878767 51878784 RARA_MA0729.1 -9.443790371197302 - +chr1 52843392 52843409 RARA_MA0729.1 -10.098042979515800 - +chr1 56330491 56330508 RARA_MA0729.1 -12.545639986926258 + +chr1 58968718 58968735 RARA_MA0729.1 -8.372863789963812 + +chr1 59296619 59296636 RARA_MA0729.1 -13.261342126524195 + +chr1 61050177 61050194 RARA_MA0729.1 -11.254333413818161 + +chr1 62811092 62811109 RARA_MA0729.1 -11.374820775932747 - +chr1 65393548 65393565 RARA_MA0729.1 -12.458841682724842 + +chr1 65895334 65895351 RARA_MA0729.1 -4.774052474035376 + +chr1 66336404 66336421 RARA_MA0729.1 -6.107295801261291 + +chr1 66342828 66342845 RARA_MA0729.1 -9.461457219732981 + +chr1 66397107 66397124 RARA_MA0729.1 -7.406378887003407 + +chr1 66445961 66445978 RARA_MA0729.1 -4.552179948950434 + +chr1 66924915 66924932 RARA_MA0729.1 -7.833192304211131 + +chr1 67760360 67760377 RARA_MA0729.1 -11.107725940407182 + +chr1 74197981 74197998 RARA_MA0729.1 -9.465660648073873 - +chr1 74653071 74653088 RARA_MA0729.1 -12.669220576041329 - +chr1 74681568 74681585 RARA_MA0729.1 -11.852009769661922 - +chr1 74812436 74812453 RARA_MA0729.1 2.218523694503695 - +chr1 74824732 74824749 RARA_MA0729.1 -10.869630790457574 - +chr1 75233516 75233533 RARA_MA0729.1 -12.404791273031394 + +chr1 75339458 75339475 RARA_MA0729.1 -11.895916254902987 - +chr1 75615119 75615136 RARA_MA0729.1 -2.209320570750161 - +chr1 75724724 75724741 RARA_MA0729.1 -11.909731874680475 + +chr1 75745503 75745520 RARA_MA0729.1 -7.470149790426674 - +chr1 75797268 75797285 RARA_MA0729.1 -11.033598440079192 + +chr1 76191153 76191170 RARA_MA0729.1 -8.330958953881989 + +chr1 76939309 76939326 RARA_MA0729.1 -11.820513086918375 + +chr1 78651153 78651170 RARA_MA0729.1 -6.592654375206812 + +chr1 78655958 78655975 RARA_MA0729.1 -5.486849819671180 + +chr1 79694324 79694341 RARA_MA0729.1 -12.186290175457103 + +chr1 81549087 81549104 RARA_MA0729.1 -2.503409238337676 - +chr1 81549404 81549421 RARA_MA0729.1 -12.546221724949088 - +chr1 83486039 83486056 RARA_MA0729.1 -3.830682087370080 - +chr1 84506119 84506136 RARA_MA0729.1 -8.825167560851980 + +chr1 84599782 84599799 RARA_MA0729.1 -9.461457219732981 + +chr1 84599908 84599925 RARA_MA0729.1 -6.207614723014959 + +chr1 87052154 87052171 RARA_MA0729.1 -8.910941816770833 + +chr1 89780987 89781004 RARA_MA0729.1 -13.039241293718781 - +chr1 89781219 89781236 RARA_MA0729.1 -8.061049137484499 + +chr1 89781402 89781419 RARA_MA0729.1 -11.754995403670025 - +chr1 89855879 89855896 RARA_MA0729.1 -12.387110847820770 + +chr1 91572279 91572296 RARA_MA0729.1 -9.034311026815491 + +chr1 91885560 91885577 RARA_MA0729.1 -9.777142822694895 + +chr1 92537156 92537173 RARA_MA0729.1 -12.600689558351718 - +chr1 92975704 92975721 RARA_MA0729.1 -9.136321634630724 + +chr1 93015143 93015160 RARA_MA0729.1 -4.774052474035376 - +chr1 93181175 93181192 RARA_MA0729.1 -9.320577796927026 + +chr1 93591922 93591939 RARA_MA0729.1 -13.297273726805496 + +chr1 93615714 93615731 RARA_MA0729.1 -7.260557146682142 + +chr1 94721220 94721237 RARA_MA0729.1 8.006527393549547 - +chr1 96515905 96515922 RARA_MA0729.1 1.283843090318235 + +chr1 97461536 97461553 RARA_MA0729.1 -9.606243702494197 + +chr1 97505896 97505913 RARA_MA0729.1 -8.484608325947040 + diff --git a/demo/known_tfbs_chr1_hg38/RARA_RXRA_MA0159.1.bed b/demo/known_tfbs_chr1_hg38/RARA_RXRA_MA0159.1.bed new file mode 100644 index 0000000..e6bac4e --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/RARA_RXRA_MA0159.1.bed @@ -0,0 +1,330 @@ +chr1 10346 10362 RARA_RXRA_MA0159.1 7.182132503769791 - +chr1 1013660 1013676 RARA_RXRA_MA0159.1 6.300756531797983 + +chr1 1231697 1231713 RARA_RXRA_MA0159.1 6.339400586928420 - +chr1 1407547 1407563 RARA_RXRA_MA0159.1 9.609547642114192 + +chr1 1678320 1678336 RARA_RXRA_MA0159.1 6.651170688875867 - +chr1 1678559 1678575 RARA_RXRA_MA0159.1 11.026604129146408 - +chr1 2577918 2577934 RARA_RXRA_MA0159.1 8.598855022555259 + +chr1 2585836 2585852 RARA_RXRA_MA0159.1 9.216834622086365 - +chr1 2585909 2585925 RARA_RXRA_MA0159.1 6.924896227595040 - +chr1 3625272 3625288 RARA_RXRA_MA0159.1 8.630119250790026 + +chr1 3665907 3665923 RARA_RXRA_MA0159.1 6.922919785822002 + +chr1 6026380 6026396 RARA_RXRA_MA0159.1 7.606496422568888 - +chr1 6206041 6206057 RARA_RXRA_MA0159.1 7.536624713118520 - +chr1 6206049 6206065 RARA_RXRA_MA0159.1 13.068288768699079 + +chr1 6613920 6613936 RARA_RXRA_MA0159.1 9.506785150710444 - +chr1 8629951 8629967 RARA_RXRA_MA0159.1 6.386382648402808 + +chr1 8703392 8703408 RARA_RXRA_MA0159.1 7.132956834937350 - +chr1 9589031 9589047 RARA_RXRA_MA0159.1 7.316549967677155 + +chr1 10210276 10210292 RARA_RXRA_MA0159.1 6.389815240905872 + +chr1 10965181 10965197 RARA_RXRA_MA0159.1 9.196630724299691 + +chr1 10965335 10965351 RARA_RXRA_MA0159.1 7.329441812794210 + +chr1 10985486 10985502 RARA_RXRA_MA0159.1 7.105242592600245 - +chr1 11664639 11664655 RARA_RXRA_MA0159.1 6.348957222273881 + +chr1 11909247 11909263 RARA_RXRA_MA0159.1 10.456825715670488 - +chr1 12040529 12040545 RARA_RXRA_MA0159.1 7.088282479608369 + +chr1 12052068 12052084 RARA_RXRA_MA0159.1 12.304101685784955 - +chr1 12052311 12052327 RARA_RXRA_MA0159.1 6.682378599127977 - +chr1 12079097 12079113 RARA_RXRA_MA0159.1 6.602322093647049 - +chr1 12079333 12079349 RARA_RXRA_MA0159.1 7.239691672825874 - +chr1 12079481 12079497 RARA_RXRA_MA0159.1 6.964810955901456 + +chr1 12162183 12162199 RARA_RXRA_MA0159.1 8.333067799369040 + +chr1 13749611 13749627 RARA_RXRA_MA0159.1 7.433555057546462 - +chr1 15617235 15617251 RARA_RXRA_MA0159.1 7.640994174751349 - +chr1 15836255 15836271 RARA_RXRA_MA0159.1 6.261222340379868 - +chr1 15975658 15975674 RARA_RXRA_MA0159.1 11.689884470928968 + +chr1 16613675 16613691 RARA_RXRA_MA0159.1 6.337114111259865 + +chr1 16644860 16644876 RARA_RXRA_MA0159.1 8.235101004635604 - +chr1 19251728 19251744 RARA_RXRA_MA0159.1 6.733018154508565 + +chr1 21293742 21293758 RARA_RXRA_MA0159.1 7.342617567471262 + +chr1 21762640 21762656 RARA_RXRA_MA0159.1 7.616064883055124 + +chr1 23484651 23484667 RARA_RXRA_MA0159.1 6.992924715827355 - +chr1 25022387 25022403 RARA_RXRA_MA0159.1 6.474124717705594 + +chr1 25022626 25022642 RARA_RXRA_MA0159.1 10.419404967514915 + +chr1 25232697 25232713 RARA_RXRA_MA0159.1 7.152000743174023 + +chr1 26317925 26317941 RARA_RXRA_MA0159.1 7.116209657825751 + +chr1 26432261 26432277 RARA_RXRA_MA0159.1 7.156818166338887 + +chr1 26432394 26432410 RARA_RXRA_MA0159.1 8.694648952694276 + +chr1 27365876 27365892 RARA_RXRA_MA0159.1 7.300786381003832 + +chr1 27626290 27626306 RARA_RXRA_MA0159.1 7.083750905842669 + +chr1 27659627 27659643 RARA_RXRA_MA0159.1 7.879827056287491 + +chr1 28648854 28648870 RARA_RXRA_MA0159.1 10.980071602501699 - +chr1 28736538 28736554 RARA_RXRA_MA0159.1 6.681764272049318 + +chr1 29182039 29182055 RARA_RXRA_MA0159.1 6.209771766685028 + +chr1 32292183 32292199 RARA_RXRA_MA0159.1 6.612053991246411 + +chr1 32394560 32394576 RARA_RXRA_MA0159.1 7.521048877936588 - +chr1 32627654 32627670 RARA_RXRA_MA0159.1 9.130894866958705 + +chr1 32817607 32817623 RARA_RXRA_MA0159.1 6.483558301360212 + +chr1 32992973 32992989 RARA_RXRA_MA0159.1 6.283882776039071 + +chr1 33036721 33036737 RARA_RXRA_MA0159.1 7.681992272040983 - +chr1 33127748 33127764 RARA_RXRA_MA0159.1 6.701757224828020 + +chr1 33350319 33350335 RARA_RXRA_MA0159.1 9.233795910200156 + +chr1 34530649 34530665 RARA_RXRA_MA0159.1 9.879214815619738 + +chr1 35269159 35269175 RARA_RXRA_MA0159.1 8.099888189070194 + +chr1 35269195 35269211 RARA_RXRA_MA0159.1 6.779821371174924 + +chr1 35769870 35769886 RARA_RXRA_MA0159.1 7.198187332119137 - +chr1 36224868 36224884 RARA_RXRA_MA0159.1 7.889384029378125 - +chr1 36386083 36386099 RARA_RXRA_MA0159.1 8.982644370993299 + +chr1 37595903 37595919 RARA_RXRA_MA0159.1 6.228092952700578 - +chr1 37807835 37807851 RARA_RXRA_MA0159.1 7.260804397191206 - +chr1 37901551 37901567 RARA_RXRA_MA0159.1 6.285252395941221 + +chr1 37989809 37989825 RARA_RXRA_MA0159.1 7.557890668593361 + +chr1 38028408 38028424 RARA_RXRA_MA0159.1 6.448172376115298 + +chr1 38559496 38559512 RARA_RXRA_MA0159.1 6.733021472913965 + +chr1 38991591 38991607 RARA_RXRA_MA0159.1 6.719184594054791 - +chr1 39215380 39215396 RARA_RXRA_MA0159.1 7.056452547032727 + +chr1 39816990 39817006 RARA_RXRA_MA0159.1 6.444761241473003 + +chr1 40665922 40665938 RARA_RXRA_MA0159.1 8.072775213110152 - +chr1 41727358 41727374 RARA_RXRA_MA0159.1 6.278767108377970 - +chr1 41751466 41751482 RARA_RXRA_MA0159.1 6.395149609752380 - +chr1 42036020 42036036 RARA_RXRA_MA0159.1 6.758326782690304 + +chr1 42658462 42658478 RARA_RXRA_MA0159.1 6.344492703048477 - +chr1 43974613 43974629 RARA_RXRA_MA0159.1 11.550320253341994 + +chr1 44739847 44739863 RARA_RXRA_MA0159.1 6.593540983022939 + +chr1 44775625 44775641 RARA_RXRA_MA0159.1 8.041839476561517 + +chr1 45339738 45339754 RARA_RXRA_MA0159.1 6.204472032563288 - +chr1 45551017 45551033 RARA_RXRA_MA0159.1 8.128863084983285 - +chr1 46198722 46198738 RARA_RXRA_MA0159.1 7.147132894634799 + +chr1 46198733 46198749 RARA_RXRA_MA0159.1 7.348707156843444 + +chr1 46303672 46303688 RARA_RXRA_MA0159.1 6.421085094079116 - +chr1 46604001 46604017 RARA_RXRA_MA0159.1 6.235722669796701 + +chr1 46616273 46616289 RARA_RXRA_MA0159.1 7.371429506116352 - +chr1 46719393 46719409 RARA_RXRA_MA0159.1 6.498241516375705 + +chr1 47313902 47313918 RARA_RXRA_MA0159.1 6.315909508436720 - +chr1 47436769 47436785 RARA_RXRA_MA0159.1 6.697743898510041 + +chr1 50349147 50349163 RARA_RXRA_MA0159.1 7.538485324430683 - +chr1 51236408 51236424 RARA_RXRA_MA0159.1 7.103162450223075 - +chr1 51519154 51519170 RARA_RXRA_MA0159.1 7.248955582324788 + +chr1 52365858 52365874 RARA_RXRA_MA0159.1 8.087468540626594 + +chr1 52637285 52637301 RARA_RXRA_MA0159.1 7.155337213795113 - +chr1 52697801 52697817 RARA_RXRA_MA0159.1 7.616064883055124 - +chr1 52698287 52698303 RARA_RXRA_MA0159.1 9.543936621602450 - +chr1 52843395 52843411 RARA_RXRA_MA0159.1 7.719966956335767 - +chr1 53238577 53238593 RARA_RXRA_MA0159.1 6.209775219023038 - +chr1 53238648 53238664 RARA_RXRA_MA0159.1 7.080724474866377 - +chr1 54199980 54199996 RARA_RXRA_MA0159.1 7.181805479772661 - +chr1 55214786 55214802 RARA_RXRA_MA0159.1 7.721999798282422 - +chr1 56296583 56296599 RARA_RXRA_MA0159.1 8.099877831709565 - +chr1 56330589 56330605 RARA_RXRA_MA0159.1 7.388610774285688 - +chr1 57167935 57167951 RARA_RXRA_MA0159.1 8.570696015363920 + +chr1 58584410 58584426 RARA_RXRA_MA0159.1 8.222773062846542 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6.694268752100310 + +chr1 68496539 68496555 RARA_RXRA_MA0159.1 8.416536382391600 - +chr1 70204969 70204985 RARA_RXRA_MA0159.1 6.981477888358130 + +chr1 73573306 73573322 RARA_RXRA_MA0159.1 9.630935830273987 - +chr1 74197997 74198013 RARA_RXRA_MA0159.1 6.296289686219216 + +chr1 75724816 75724832 RARA_RXRA_MA0159.1 7.396923090090679 + +chr1 75785337 75785353 RARA_RXRA_MA0159.1 7.249732270898193 - +chr1 75796964 75796980 RARA_RXRA_MA0159.1 7.225812292762928 + +chr1 75909253 75909269 RARA_RXRA_MA0159.1 6.842430473056719 + +chr1 75981543 75981559 RARA_RXRA_MA0159.1 9.205471243149155 - +chr1 75985987 75986003 RARA_RXRA_MA0159.1 8.473503825899249 - +chr1 76074807 76074823 RARA_RXRA_MA0159.1 7.830554968050599 - +chr1 76154894 76154910 RARA_RXRA_MA0159.1 6.825145009765770 + +chr1 76668255 76668271 RARA_RXRA_MA0159.1 9.479197476302888 - +chr1 77682458 77682474 RARA_RXRA_MA0159.1 9.101320658131595 + +chr1 77683247 77683263 RARA_RXRA_MA0159.1 7.573210145342243 - +chr1 77927142 77927158 RARA_RXRA_MA0159.1 6.392226603101276 - +chr1 78004101 78004117 RARA_RXRA_MA0159.1 9.825709924076621 - +chr1 78277526 78277542 RARA_RXRA_MA0159.1 6.733019543383952 - +chr1 79695212 79695228 RARA_RXRA_MA0159.1 6.291799663487911 + +chr1 82152560 82152576 RARA_RXRA_MA0159.1 11.036654111473974 - +chr1 82152827 82152843 RARA_RXRA_MA0159.1 6.247514665606218 - +chr1 83131480 83131496 RARA_RXRA_MA0159.1 8.900980348280191 - +chr1 83485853 83485869 RARA_RXRA_MA0159.1 10.306063345520025 + +chr1 83487709 83487725 RARA_RXRA_MA0159.1 8.975341742716720 + +chr1 84271437 84271453 RARA_RXRA_MA0159.1 8.359385986552535 + +chr1 84271578 84271594 RARA_RXRA_MA0159.1 6.887161989275809 + +chr1 84506523 84506539 RARA_RXRA_MA0159.1 9.976197490793998 + +chr1 84599161 84599177 RARA_RXRA_MA0159.1 8.247130167689150 - +chr1 85201378 85201394 RARA_RXRA_MA0159.1 7.288963086460097 + +chr1 85201962 85201978 RARA_RXRA_MA0159.1 6.736070770639367 + +chr1 85707873 85707889 RARA_RXRA_MA0159.1 10.023788453710248 - +chr1 86396418 86396434 RARA_RXRA_MA0159.1 9.258712077157361 + +chr1 86774052 86774068 RARA_RXRA_MA0159.1 7.008240076493834 + +chr1 87046064 87046080 RARA_RXRA_MA0159.1 8.579450650593440 - +chr1 87052303 87052319 RARA_RXRA_MA0159.1 6.346936255398237 - +chr1 87057624 87057640 RARA_RXRA_MA0159.1 7.616064883055124 + +chr1 87335135 87335151 RARA_RXRA_MA0159.1 6.773827396760579 - +chr1 88192043 88192059 RARA_RXRA_MA0159.1 6.733006349203539 + +chr1 88683724 88683740 RARA_RXRA_MA0159.1 6.761417420699301 + +chr1 88683754 88683770 RARA_RXRA_MA0159.1 10.525338399182585 + +chr1 88684045 88684061 RARA_RXRA_MA0159.1 7.269138830325913 - +chr1 88685030 88685046 RARA_RXRA_MA0159.1 6.786497198344034 - +chr1 89525317 89525333 RARA_RXRA_MA0159.1 8.572960666125011 - +chr1 89821442 89821458 RARA_RXRA_MA0159.1 6.723649113280196 + +chr1 89821619 89821635 RARA_RXRA_MA0159.1 6.964810529766819 - +chr1 89822070 89822086 RARA_RXRA_MA0159.1 9.795855853365387 - +chr1 91501236 91501252 RARA_RXRA_MA0159.1 6.762390261477371 - +chr1 92484015 92484031 RARA_RXRA_MA0159.1 6.920350090611697 + +chr1 92961070 92961086 RARA_RXRA_MA0159.1 8.389252180491246 + +chr1 93681196 93681212 RARA_RXRA_MA0159.1 6.355131614333025 + +chr1 94037607 94037623 RARA_RXRA_MA0159.1 8.733596732705124 + +chr1 95095626 95095642 RARA_RXRA_MA0159.1 6.740599062357560 - +chr1 97138461 97138477 RARA_RXRA_MA0159.1 10.394086686777406 + +chr1 97164054 97164070 RARA_RXRA_MA0159.1 6.923991218290444 + +chr1 97848326 97848342 RARA_RXRA_MA0159.1 7.616064883055124 - +chr1 99750060 99750076 RARA_RXRA_MA0159.1 7.133012577640754 - +chr1 99970287 99970303 RARA_RXRA_MA0159.1 6.496962480760994 + +chr1 100377747 100377763 RARA_RXRA_MA0159.1 8.474570764371153 + +chr1 100895197 100895213 RARA_RXRA_MA0159.1 8.568095327021204 - +chr1 100896437 100896453 RARA_RXRA_MA0159.1 7.393829103890106 - +chr1 101025935 101025951 RARA_RXRA_MA0159.1 8.912978216058359 + +chr1 101026234 101026250 RARA_RXRA_MA0159.1 6.305536721465721 + +chr1 101247682 101247698 RARA_RXRA_MA0159.1 6.865141026496282 - +chr1 101258150 101258166 RARA_RXRA_MA0159.1 10.046263863188219 - +chr1 101445364 101445380 RARA_RXRA_MA0159.1 6.974170399132714 - +chr1 107460265 107460281 RARA_RXRA_MA0159.1 8.771822388569007 + +chr1 107964651 107964667 RARA_RXRA_MA0159.1 6.424122278061777 - +chr1 108661361 108661377 RARA_RXRA_MA0159.1 7.883248161394953 - +chr1 108877281 108877297 RARA_RXRA_MA0159.1 6.912473171884910 + +chr1 109075838 109075854 RARA_RXRA_MA0159.1 7.588055828254818 - +chr1 109090998 109091014 RARA_RXRA_MA0159.1 7.204713842259862 - +chr1 109483861 109483877 RARA_RXRA_MA0159.1 6.328812211893680 + +chr1 109484229 109484245 RARA_RXRA_MA0159.1 8.119295174632553 - +chr1 109532777 109532793 RARA_RXRA_MA0159.1 8.249481258502664 - +chr1 109620043 109620059 RARA_RXRA_MA0159.1 7.124663908682534 + +chr1 110384704 110384720 RARA_RXRA_MA0159.1 7.570448501814946 - +chr1 110407974 110407990 RARA_RXRA_MA0159.1 6.652963697620969 - +chr1 111139764 111139780 RARA_RXRA_MA0159.1 8.207519085494010 + +chr1 111222459 111222475 RARA_RXRA_MA0159.1 9.168055906080333 - +chr1 111449498 111449514 RARA_RXRA_MA0159.1 7.161948049987753 + +chr1 111449640 111449656 RARA_RXRA_MA0159.1 9.869960612800208 + +chr1 111738700 111738716 RARA_RXRA_MA0159.1 6.595815662858149 - +chr1 112466166 112466182 RARA_RXRA_MA0159.1 9.898131946111599 + +chr1 112619871 112619887 RARA_RXRA_MA0159.1 6.528426083182143 + +chr1 112674805 112674821 RARA_RXRA_MA0159.1 6.449451312974071 - +chr1 113390233 113390249 RARA_RXRA_MA0159.1 6.750932843958967 - +chr1 113905201 113905217 RARA_RXRA_MA0159.1 6.412580451159178 - +chr1 113905212 113905228 RARA_RXRA_MA0159.1 7.570934275489327 - +chr1 114780434 114780450 RARA_RXRA_MA0159.1 11.202017643997811 - +chr1 115139054 115139070 RARA_RXRA_MA0159.1 6.270397135327308 - +chr1 115139264 115139280 RARA_RXRA_MA0159.1 7.135628369772947 - +chr1 115139285 115139301 RARA_RXRA_MA0159.1 6.605858488543355 - +chr1 115729927 115729943 RARA_RXRA_MA0159.1 8.068241411747026 + 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151458136 RARA_RXRA_MA0159.1 7.591146639877412 - +chr1 152908435 152908451 RARA_RXRA_MA0159.1 9.006330586385968 + +chr1 152908467 152908483 RARA_RXRA_MA0159.1 8.755283328591180 - +chr1 153598794 153598810 RARA_RXRA_MA0159.1 8.669539619772792 - +chr1 153598921 153598937 RARA_RXRA_MA0159.1 6.442483550315286 - +chr1 153728136 153728152 RARA_RXRA_MA0159.1 6.671328962878722 - +chr1 153945919 153945935 RARA_RXRA_MA0159.1 9.026142342780563 + +chr1 153946037 153946053 RARA_RXRA_MA0159.1 7.094806395092796 - +chr1 154559524 154559540 RARA_RXRA_MA0159.1 7.165473334004426 + +chr1 155084943 155084959 RARA_RXRA_MA0159.1 6.850211766519097 + +chr1 155194078 155194094 RARA_RXRA_MA0159.1 6.827610249953663 + +chr1 155227846 155227862 RARA_RXRA_MA0159.1 7.466973961773848 + +chr1 156282498 156282514 RARA_RXRA_MA0159.1 8.128852226643378 - +chr1 156282695 156282711 RARA_RXRA_MA0159.1 6.500508944878405 + +chr1 156457398 156457414 RARA_RXRA_MA0159.1 6.760604891422712 - +chr1 156500843 156500859 RARA_RXRA_MA0159.1 6.240543267524112 + +chr1 156766932 156766948 RARA_RXRA_MA0159.1 6.212815250208836 - +chr1 157176851 157176867 RARA_RXRA_MA0159.1 7.029340484195364 + +chr1 157181953 157181969 RARA_RXRA_MA0159.1 10.950220656749774 - +chr1 157403609 157403625 RARA_RXRA_MA0159.1 7.368130278464074 - +chr1 157403907 157403923 RARA_RXRA_MA0159.1 7.163790278697567 - +chr1 157512189 157512205 RARA_RXRA_MA0159.1 11.675495769401481 + +chr1 158163242 158163258 RARA_RXRA_MA0159.1 7.964088518392332 + +chr1 158179742 158179758 RARA_RXRA_MA0159.1 12.013553366583217 + +chr1 159076989 159077005 RARA_RXRA_MA0159.1 6.866832886149727 - +chr1 159924849 159924865 RARA_RXRA_MA0159.1 9.863457807959691 + +chr1 160262155 160262171 RARA_RXRA_MA0159.1 6.324703109319540 + +chr1 160429227 160429243 RARA_RXRA_MA0159.1 8.985405777797917 - +chr1 160767805 160767821 RARA_RXRA_MA0159.1 6.951327775021904 - +chr1 160790313 160790329 RARA_RXRA_MA0159.1 7.774459611261648 - +chr1 161013857 161013873 RARA_RXRA_MA0159.1 7.867377079209133 + +chr1 161185848 161185864 RARA_RXRA_MA0159.1 8.837760164686241 - +chr1 161185992 161186008 RARA_RXRA_MA0159.1 8.543562633884070 - +chr1 161726650 161726666 RARA_RXRA_MA0159.1 6.733017921820018 + +chr1 161727123 161727139 RARA_RXRA_MA0159.1 8.022915178496628 - +chr1 161915205 161915221 RARA_RXRA_MA0159.1 6.932357759308037 - +chr1 162498380 162498396 RARA_RXRA_MA0159.1 8.390639103923100 - +chr1 162631013 162631029 RARA_RXRA_MA0159.1 6.863214257990276 - +chr1 162701542 162701558 RARA_RXRA_MA0159.1 7.577902221233423 - +chr1 162736722 162736738 RARA_RXRA_MA0159.1 7.860077402278234 + +chr1 163923049 163923065 RARA_RXRA_MA0159.1 9.745680744462982 + +chr1 165878143 165878159 RARA_RXRA_MA0159.1 7.579233154061320 - +chr1 166975665 166975681 RARA_RXRA_MA0159.1 7.633792707549732 + +chr1 167220860 167220876 RARA_RXRA_MA0159.1 6.448171334456770 + +chr1 167221190 167221206 RARA_RXRA_MA0159.1 9.400423816365123 - +chr1 167617671 167617687 RARA_RXRA_MA0159.1 7.771604465902248 + +chr1 167936573 167936589 RARA_RXRA_MA0159.1 6.593541598543574 + +chr1 169485604 169485620 RARA_RXRA_MA0159.1 7.661139978322044 + +chr1 169680683 169680699 RARA_RXRA_MA0159.1 10.072168904348031 + +chr1 169680829 169680845 RARA_RXRA_MA0159.1 7.752971511121262 - +chr1 169794638 169794654 RARA_RXRA_MA0159.1 7.483920310154026 + +chr1 169795314 169795330 RARA_RXRA_MA0159.1 7.489221569331816 - +chr1 170532626 170532642 RARA_RXRA_MA0159.1 7.451464414830333 + +chr1 170532632 170532648 RARA_RXRA_MA0159.1 8.686211289277741 + +chr1 171314085 171314101 RARA_RXRA_MA0159.1 7.266303518836629 + +chr1 171781417 171781433 RARA_RXRA_MA0159.1 8.398198026322753 - +chr1 172338431 172338447 RARA_RXRA_MA0159.1 7.395510258978240 + +chr1 172725411 172725427 RARA_RXRA_MA0159.1 6.417165269577778 - +chr1 173298020 173298036 RARA_RXRA_MA0159.1 6.470648633802455 - +chr1 173355662 173355678 RARA_RXRA_MA0159.1 8.763650147384233 - +chr1 173867885 173867901 RARA_RXRA_MA0159.1 7.712434125007068 - +chr1 173868112 173868128 RARA_RXRA_MA0159.1 6.513144953588125 - +chr1 174874697 174874713 RARA_RXRA_MA0159.1 6.500508895259735 + +chr1 174998948 174998964 RARA_RXRA_MA0159.1 8.295919676665386 - +chr1 174999003 174999019 RARA_RXRA_MA0159.1 8.295919676665386 - +chr1 175142515 175142531 RARA_RXRA_MA0159.1 7.468429542085611 + +chr1 178412654 178412670 RARA_RXRA_MA0159.1 7.298522916210120 + +chr1 178542298 178542314 RARA_RXRA_MA0159.1 9.382500168793511 + +chr1 178543061 178543077 RARA_RXRA_MA0159.1 7.469486258037279 + +chr1 178579600 178579616 RARA_RXRA_MA0159.1 6.492138584463930 + +chr1 178973428 178973444 RARA_RXRA_MA0159.1 6.386394984007595 + +chr1 179034982 179034998 RARA_RXRA_MA0159.1 7.867996797642959 - +chr1 179081691 179081707 RARA_RXRA_MA0159.1 6.877304263155041 + +chr1 179088849 179088865 RARA_RXRA_MA0159.1 7.531523802121152 - +chr1 179551877 179551893 RARA_RXRA_MA0159.1 8.602330525645213 + +chr1 180632445 180632461 RARA_RXRA_MA0159.1 7.483923087893224 - +chr1 180632557 180632573 RARA_RXRA_MA0159.1 6.701165102373441 + +chr1 180909281 180909297 RARA_RXRA_MA0159.1 7.655676341781662 - +chr1 181430047 181430063 RARA_RXRA_MA0159.1 7.272299452573105 - +chr1 183023683 183023699 RARA_RXRA_MA0159.1 9.042494528327056 - +chr1 183195038 183195054 RARA_RXRA_MA0159.1 8.136244359830107 - +chr1 183591009 183591025 RARA_RXRA_MA0159.1 7.753254998953768 - +chr1 183898148 183898164 RARA_RXRA_MA0159.1 7.723402222412307 + +chr1 183912409 183912425 RARA_RXRA_MA0159.1 6.254477472639039 + +chr1 184755056 184755072 RARA_RXRA_MA0159.1 6.231174206459995 - +chr1 184973955 184973971 RARA_RXRA_MA0159.1 9.143996329081414 + +chr1 185045637 185045653 RARA_RXRA_MA0159.1 7.340408451881824 + +chr1 185046117 185046133 RARA_RXRA_MA0159.1 6.350016293901803 + +chr1 185170497 185170513 RARA_RXRA_MA0159.1 9.462541778717551 - +chr1 185317468 185317484 RARA_RXRA_MA0159.1 10.795494922600207 + +chr1 185317479 185317495 RARA_RXRA_MA0159.1 7.757161638746375 + +chr1 185596115 185596131 RARA_RXRA_MA0159.1 6.741662925586477 + +chr1 185636951 185636967 RARA_RXRA_MA0159.1 7.926008486670147 + +chr1 186559891 186559907 RARA_RXRA_MA0159.1 6.768380158277704 - +chr1 187411364 187411380 RARA_RXRA_MA0159.1 6.853649289519812 - +chr1 190084531 190084547 RARA_RXRA_MA0159.1 6.405130417662017 - diff --git a/demo/known_tfbs_chr1_hg38/RARA_RXRG_MA1149.1.bed b/demo/known_tfbs_chr1_hg38/RARA_RXRG_MA1149.1.bed new file mode 100644 index 0000000..238d9a4 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/RARA_RXRG_MA1149.1.bed @@ -0,0 +1,332 @@ +chr1 10097 10114 RARA_RXRG_MA1149.1 7.385466446799684 - +chr1 10103 10120 RARA_RXRG_MA1149.1 8.278094924749682 - +chr1 10169 10186 RARA_RXRG_MA1149.1 9.449016424521806 - +chr1 10175 10192 RARA_RXRG_MA1149.1 8.516505934597165 - +chr1 10346 10363 RARA_RXRG_MA1149.1 9.334506724154943 - +chr1 10352 10369 RARA_RXRG_MA1149.1 7.536783557651857 - +chr1 779220 779237 RARA_RXRG_MA1149.1 7.202066838773043 - +chr1 1157902 1157919 RARA_RXRG_MA1149.1 8.600625174551229 + +chr1 1231697 1231714 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7.762392614436177 - +chr1 9129604 9129621 RARA_RXRG_MA1149.1 7.119881743154476 - +chr1 9181464 9181481 RARA_RXRG_MA1149.1 7.814501887055894 + +chr1 9909951 9909968 RARA_RXRG_MA1149.1 6.948088083084414 + +chr1 9910960 9910977 RARA_RXRG_MA1149.1 7.492987561614983 - +chr1 10965334 10965351 RARA_RXRG_MA1149.1 7.128442803998025 + +chr1 10985486 10985503 RARA_RXRG_MA1149.1 7.351137150848952 - +chr1 11273031 11273048 RARA_RXRG_MA1149.1 7.543202287818248 - +chr1 11805852 11805869 RARA_RXRG_MA1149.1 7.397976091653755 - +chr1 11909247 11909264 RARA_RXRG_MA1149.1 7.059109586101323 - +chr1 11980363 11980380 RARA_RXRG_MA1149.1 7.254645275108537 + +chr1 12019454 12019471 RARA_RXRG_MA1149.1 6.992233920311566 - +chr1 12052068 12052085 RARA_RXRG_MA1149.1 7.566469843212913 - +chr1 12052268 12052285 RARA_RXRG_MA1149.1 7.105833594856316 - +chr1 12052311 12052328 RARA_RXRG_MA1149.1 7.474046506330668 - +chr1 12162067 12162084 RARA_RXRG_MA1149.1 7.290642677355510 + +chr1 12162182 12162199 RARA_RXRG_MA1149.1 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66396772 RARA_RXRG_MA1149.1 8.292558892922262 - +chr1 66397421 66397438 RARA_RXRG_MA1149.1 9.403886883650170 + +chr1 66758358 66758375 RARA_RXRG_MA1149.1 7.992634111728650 + +chr1 67172174 67172191 RARA_RXRG_MA1149.1 8.085440645632591 + +chr1 68496539 68496556 RARA_RXRG_MA1149.1 10.257132448668182 - +chr1 70204968 70204985 RARA_RXRG_MA1149.1 8.935675137338688 + +chr1 70411551 70411568 RARA_RXRG_MA1149.1 7.544087206287940 + +chr1 70504989 70505006 RARA_RXRG_MA1149.1 7.995638991032235 + +chr1 71053877 71053894 RARA_RXRG_MA1149.1 7.109333560796097 + +chr1 74732850 74732867 RARA_RXRG_MA1149.1 7.187518178585215 + +chr1 74812315 74812332 RARA_RXRG_MA1149.1 7.826965750962566 - +chr1 75796963 75796980 RARA_RXRG_MA1149.1 8.027378773602447 + +chr1 75981543 75981560 RARA_RXRG_MA1149.1 8.930061388802967 - +chr1 77682457 77682474 RARA_RXRG_MA1149.1 8.133400848308609 + +chr1 77770594 77770611 RARA_RXRG_MA1149.1 7.341380341979082 - +chr1 81598171 81598188 RARA_RXRG_MA1149.1 7.092853908097121 + +chr1 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7.195210738892325 + +chr1 117930062 117930079 RARA_RXRG_MA1149.1 7.333646536629855 - +chr1 117930073 117930090 RARA_RXRG_MA1149.1 7.734069133324173 - +chr1 119661993 119662010 RARA_RXRG_MA1149.1 7.666148244616401 + +chr1 119662612 119662629 RARA_RXRG_MA1149.1 7.601312073450889 + +chr1 120415107 120415124 RARA_RXRG_MA1149.1 7.330824508492134 + +chr1 144412495 144412512 RARA_RXRG_MA1149.1 7.330726615017427 + +chr1 144461562 144461579 RARA_RXRG_MA1149.1 7.330824508492134 - +chr1 145281035 145281052 RARA_RXRG_MA1149.1 6.933043685505383 + +chr1 145425505 145425522 RARA_RXRG_MA1149.1 7.330824508492134 - +chr1 145845546 145845563 RARA_RXRG_MA1149.1 7.153856118165164 - +chr1 145845857 145845874 RARA_RXRG_MA1149.1 9.129662257103428 + +chr1 145918528 145918545 RARA_RXRG_MA1149.1 8.698135726610944 - +chr1 145979181 145979198 RARA_RXRG_MA1149.1 8.323573518014920 - +chr1 146035741 146035758 RARA_RXRG_MA1149.1 7.348949794499627 + +chr1 146938812 146938829 RARA_RXRG_MA1149.1 7.330824508492134 + +chr1 147243511 147243528 RARA_RXRG_MA1149.1 8.937382949995524 - +chr1 147600467 147600484 RARA_RXRG_MA1149.1 8.353122733688402 + +chr1 148151903 148151920 RARA_RXRG_MA1149.1 7.330824508492134 - +chr1 148334757 148334774 RARA_RXRG_MA1149.1 7.228222437113472 + +chr1 149927803 149927820 RARA_RXRG_MA1149.1 7.954281246851063 - +chr1 150562497 150562514 RARA_RXRG_MA1149.1 13.672721561693717 + +chr1 150926584 150926601 RARA_RXRG_MA1149.1 7.853946538985372 + +chr1 150974509 150974526 RARA_RXRG_MA1149.1 6.937538291114148 - +chr1 151071141 151071158 RARA_RXRG_MA1149.1 7.775579873255047 + +chr1 151156509 151156526 RARA_RXRG_MA1149.1 9.420597544248597 - +chr1 151157141 151157158 RARA_RXRG_MA1149.1 6.963133406469819 + +chr1 151281579 151281596 RARA_RXRG_MA1149.1 8.053515725226756 - +chr1 151458120 151458137 RARA_RXRG_MA1149.1 7.122765299725446 - +chr1 151540482 151540499 RARA_RXRG_MA1149.1 8.148200847689004 - +chr1 152908434 152908451 RARA_RXRG_MA1149.1 7.469980398371016 + +chr1 153598794 153598811 RARA_RXRG_MA1149.1 9.220838732419004 - +chr1 153728136 153728153 RARA_RXRG_MA1149.1 7.115824797320119 - +chr1 153805501 153805518 RARA_RXRG_MA1149.1 7.921349511581431 - +chr1 153945770 153945787 RARA_RXRG_MA1149.1 7.395594117121794 + +chr1 153945918 153945935 RARA_RXRG_MA1149.1 7.283527298485295 + +chr1 153946037 153946054 RARA_RXRG_MA1149.1 8.146211543057296 - +chr1 154559310 154559327 RARA_RXRG_MA1149.1 6.989115281500382 - +chr1 154559523 154559540 RARA_RXRG_MA1149.1 7.114812454673467 + +chr1 155194077 155194094 RARA_RXRG_MA1149.1 6.926299185485060 + +chr1 156114868 156114885 RARA_RXRG_MA1149.1 7.068698871767200 - +chr1 156282498 156282515 RARA_RXRG_MA1149.1 7.881813996453944 - +chr1 156282694 156282711 RARA_RXRG_MA1149.1 8.097218332022246 + +chr1 156457195 156457212 RARA_RXRG_MA1149.1 8.244393928797951 - +chr1 156457376 156457393 RARA_RXRG_MA1149.1 7.420581372383292 + +chr1 157176850 157176867 RARA_RXRG_MA1149.1 9.093800053072304 + +chr1 157176977 157176994 RARA_RXRG_MA1149.1 7.237196498852004 + +chr1 157181953 157181970 RARA_RXRG_MA1149.1 11.155883767966955 - +chr1 157403522 157403539 RARA_RXRG_MA1149.1 8.045317533303956 + +chr1 157403907 157403924 RARA_RXRG_MA1149.1 8.165551112632022 - +chr1 157512188 157512205 RARA_RXRG_MA1149.1 9.701091820986182 + +chr1 158163162 158163179 RARA_RXRG_MA1149.1 8.691453275039253 - +chr1 158163241 158163258 RARA_RXRG_MA1149.1 8.644639245670382 + +chr1 158179741 158179758 RARA_RXRG_MA1149.1 10.758174713706065 + +chr1 159910580 159910597 RARA_RXRG_MA1149.1 7.017330197490493 + +chr1 159925239 159925256 RARA_RXRG_MA1149.1 8.136532963520445 - +chr1 160262280 160262297 RARA_RXRG_MA1149.1 8.667553676793458 + +chr1 160429227 160429244 RARA_RXRG_MA1149.1 10.060671035963910 - +chr1 161013856 161013873 RARA_RXRG_MA1149.1 7.516380264828118 + +chr1 161045992 161046009 RARA_RXRG_MA1149.1 7.197426995332174 - +chr1 161166577 161166594 RARA_RXRG_MA1149.1 7.587753964146595 - +chr1 161185992 161186009 RARA_RXRG_MA1149.1 8.247516952221417 - 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169162011 RARA_RXRG_MA1149.1 11.519952362938708 - +chr1 169368340 169368357 RARA_RXRG_MA1149.1 7.440707439194123 + +chr1 169485603 169485620 RARA_RXRG_MA1149.1 7.319409240424514 + +chr1 169680682 169680699 RARA_RXRG_MA1149.1 8.333549480931971 + +chr1 169680829 169680846 RARA_RXRG_MA1149.1 9.716947608720254 - +chr1 169692852 169692869 RARA_RXRG_MA1149.1 7.519870420670658 + +chr1 169795314 169795331 RARA_RXRG_MA1149.1 7.717742771845114 - +chr1 169893427 169893444 RARA_RXRG_MA1149.1 10.894206408863331 + +chr1 170532625 170532642 RARA_RXRG_MA1149.1 7.706691554932412 + +chr1 170532631 170532648 RARA_RXRG_MA1149.1 10.168410240016863 + +chr1 171742103 171742120 RARA_RXRG_MA1149.1 7.009561919373009 + diff --git a/demo/known_tfbs_chr1_hg38/RARA_var.2__MA0730.1.bed b/demo/known_tfbs_chr1_hg38/RARA_var.2__MA0730.1.bed new file mode 100644 index 0000000..314e014 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/RARA_var.2__MA0730.1.bed @@ -0,0 +1,216 @@ +chr1 10169 10185 RARA_var.2__MA0730.1 4.176796816738969 - +chr1 10346 10362 RARA_var.2__MA0730.1 3.014060113704388 - +chr1 779231 779247 RARA_var.2__MA0730.1 5.811204298490311 - +chr1 1407547 1407563 RARA_var.2__MA0730.1 6.215517151954502 + +chr1 1511604 1511620 RARA_var.2__MA0730.1 3.110366333317310 + +chr1 1678559 1678575 RARA_var.2__MA0730.1 6.428408333795712 - +chr1 2291245 2291261 RARA_var.2__MA0730.1 6.947691963930956 - +chr1 2526737 2526753 RARA_var.2__MA0730.1 2.292048436380143 + +chr1 2555921 2555937 RARA_var.2__MA0730.1 5.216950933502693 + +chr1 2577918 2577934 RARA_var.2__MA0730.1 3.325953865339763 + +chr1 2585836 2585852 RARA_var.2__MA0730.1 1.786755073110343 - +chr1 3625272 3625288 RARA_var.2__MA0730.1 3.733656007399452 + +chr1 3666655 3666671 RARA_var.2__MA0730.1 4.151405294034466 - +chr1 3677021 3677037 RARA_var.2__MA0730.1 2.350965874764838 - +chr1 6026577 6026593 RARA_var.2__MA0730.1 2.150769580757618 - +chr1 6206049 6206065 RARA_var.2__MA0730.1 11.600718538397865 + +chr1 6613920 6613936 RARA_var.2__MA0730.1 3.242397680082820 - +chr1 6625406 6625422 RARA_var.2__MA0730.1 1.750703516916042 + +chr1 7954184 7954200 RARA_var.2__MA0730.1 2.025507583650562 - +chr1 9069682 9069698 RARA_var.2__MA0730.1 3.371373245268595 - +chr1 9181465 9181481 RARA_var.2__MA0730.1 2.433681116833436 + +chr1 9909952 9909968 RARA_var.2__MA0730.1 2.563709643474060 + +chr1 9910960 9910976 RARA_var.2__MA0730.1 2.690080365612995 - +chr1 10965335 10965351 RARA_var.2__MA0730.1 1.985309579352156 + +chr1 10985486 10985502 RARA_var.2__MA0730.1 1.844053259914369 - +chr1 11909247 11909263 RARA_var.2__MA0730.1 3.780122400648648 - +chr1 12052068 12052084 RARA_var.2__MA0730.1 11.244253986806029 - +chr1 12079344 12079360 RARA_var.2__MA0730.1 2.649547312457304 - +chr1 12162068 12162084 RARA_var.2__MA0730.1 6.350180979838435 + +chr1 13749611 13749627 RARA_var.2__MA0730.1 1.674989124861952 - +chr1 15617235 15617251 RARA_var.2__MA0730.1 4.405144619652984 - +chr1 15975658 15975674 RARA_var.2__MA0730.1 4.952168883103945 + +chr1 16367974 16367990 RARA_var.2__MA0730.1 1.921877514591607 + +chr1 16513570 16513586 RARA_var.2__MA0730.1 1.498475428308920 + +chr1 16644860 16644876 RARA_var.2__MA0730.1 5.402404487140060 - +chr1 18956282 18956298 RARA_var.2__MA0730.1 3.033258482640801 + +chr1 19477301 19477317 RARA_var.2__MA0730.1 4.647808901074220 + +chr1 19485298 19485314 RARA_var.2__MA0730.1 3.181028213264284 + +chr1 20786970 20786986 RARA_var.2__MA0730.1 5.165447867001681 + +chr1 21294677 21294693 RARA_var.2__MA0730.1 1.632585951913070 - +chr1 21791763 21791779 RARA_var.2__MA0730.1 12.519489606427666 + +chr1 22039859 22039875 RARA_var.2__MA0730.1 1.531257399562465 - +chr1 24848421 24848437 RARA_var.2__MA0730.1 2.897048024980499 + +chr1 25022626 25022642 RARA_var.2__MA0730.1 5.699501081751813 + +chr1 25022866 25022882 RARA_var.2__MA0730.1 1.886188213558663 + +chr1 25232667 25232683 RARA_var.2__MA0730.1 1.751046055097267 + +chr1 25676046 25676062 RARA_var.2__MA0730.1 5.971870716479669 - 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RARA_var.2__MA0730.1 2.741968401199856 - +chr1 37926151 37926167 RARA_var.2__MA0730.1 2.375197753951881 - +chr1 37989809 37989825 RARA_var.2__MA0730.1 2.923731935522259 + +chr1 38028504 38028520 RARA_var.2__MA0730.1 3.011668717501522 - +chr1 39215190 39215206 RARA_var.2__MA0730.1 2.913851202424383 + +chr1 39509535 39509551 RARA_var.2__MA0730.1 4.997815505147267 + +chr1 39799691 39799707 RARA_var.2__MA0730.1 4.292099387878573 - +chr1 39955519 39955535 RARA_var.2__MA0730.1 2.296852614748390 - +chr1 39955807 39955823 RARA_var.2__MA0730.1 2.526870288360523 + +chr1 42036020 42036036 RARA_var.2__MA0730.1 4.290682219795801 + +chr1 42682712 42682728 RARA_var.2__MA0730.1 1.565964062015616 + +chr1 43221679 43221695 RARA_var.2__MA0730.1 1.637447357480238 + +chr1 43650341 43650357 RARA_var.2__MA0730.1 1.811265934565693 + +chr1 43974613 43974629 RARA_var.2__MA0730.1 6.618453244609315 + +chr1 44799837 44799853 RARA_var.2__MA0730.1 2.324284444146516 + +chr1 45327118 45327134 RARA_var.2__MA0730.1 2.076513381979270 + +chr1 45394569 45394585 RARA_var.2__MA0730.1 1.588069457437590 + +chr1 46198722 46198738 RARA_var.2__MA0730.1 11.425440582786479 + +chr1 46303683 46303699 RARA_var.2__MA0730.1 5.969611518077667 - +chr1 46604340 46604356 RARA_var.2__MA0730.1 1.656313255871227 + +chr1 46616273 46616289 RARA_var.2__MA0730.1 4.973663190843940 - +chr1 50333650 50333666 RARA_var.2__MA0730.1 5.471569014509623 - +chr1 50349147 50349163 RARA_var.2__MA0730.1 2.899646962306152 - +chr1 50960002 50960018 RARA_var.2__MA0730.1 2.216588839576676 - +chr1 50960106 50960122 RARA_var.2__MA0730.1 3.172567437896819 + +chr1 50969834 50969850 RARA_var.2__MA0730.1 2.759759309291312 - +chr1 51501538 51501554 RARA_var.2__MA0730.1 2.714502390055151 + +chr1 51518803 51518819 RARA_var.2__MA0730.1 2.574151631089505 + +chr1 52055619 52055635 RARA_var.2__MA0730.1 2.732236252851359 + +chr1 52365858 52365874 RARA_var.2__MA0730.1 3.106224941235340 + +chr1 53220754 53220770 RARA_var.2__MA0730.1 6.011218780374450 + 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RARA_var.2__MA0730.1 2.321800555440282 + +chr1 64956763 64956779 RARA_var.2__MA0730.1 3.791663323193119 + +chr1 64966455 64966471 RARA_var.2__MA0730.1 3.489899781945711 + +chr1 64966834 64966850 RARA_var.2__MA0730.1 2.387658994610820 - +chr1 65459432 65459448 RARA_var.2__MA0730.1 1.907234235982707 + +chr1 65812134 65812150 RARA_var.2__MA0730.1 3.140347843762124 - +chr1 66396755 66396771 RARA_var.2__MA0730.1 2.597026514011140 - +chr1 66397422 66397438 RARA_var.2__MA0730.1 3.236721421453236 + +chr1 66758359 66758375 RARA_var.2__MA0730.1 3.284201651754973 + +chr1 67172175 67172191 RARA_var.2__MA0730.1 5.404061456688136 + +chr1 67833293 67833309 RARA_var.2__MA0730.1 2.962097342074550 - +chr1 68496539 68496555 RARA_var.2__MA0730.1 2.967006477599577 - +chr1 70354297 70354313 RARA_var.2__MA0730.1 1.745752546420561 + +chr1 70411552 70411568 RARA_var.2__MA0730.1 2.044021326831898 + +chr1 70504990 70505006 RARA_var.2__MA0730.1 1.933582518712517 + +chr1 74674651 74674667 RARA_var.2__MA0730.1 2.429010771508758 - +chr1 75724560 75724576 RARA_var.2__MA0730.1 5.766320233531699 + +chr1 75785337 75785353 RARA_var.2__MA0730.1 4.858513891598602 - +chr1 75797344 75797360 RARA_var.2__MA0730.1 1.770594507233131 - +chr1 75981543 75981559 RARA_var.2__MA0730.1 2.736816122134523 - +chr1 76074490 76074506 RARA_var.2__MA0730.1 4.881694915195848 - +chr1 78655850 78655866 RARA_var.2__MA0730.1 2.478593336458512 - +chr1 79668104 79668120 RARA_var.2__MA0730.1 2.001476371361514 - +chr1 82152560 82152576 RARA_var.2__MA0730.1 5.389800974316126 - +chr1 82153356 82153372 RARA_var.2__MA0730.1 2.646741190116567 + +chr1 83485853 83485869 RARA_var.2__MA0730.1 6.907394652643100 + +chr1 83860720 83860736 RARA_var.2__MA0730.1 1.993317022777073 + +chr1 84078299 84078315 RARA_var.2__MA0730.1 4.089938114644408 - +chr1 84271437 84271453 RARA_var.2__MA0730.1 1.699556936840162 + +chr1 84271578 84271594 RARA_var.2__MA0730.1 2.029018205588531 + +chr1 84506523 84506539 RARA_var.2__MA0730.1 2.920329986343113 + +chr1 84599161 84599177 RARA_var.2__MA0730.1 2.728426242978417 - +chr1 84854197 84854213 RARA_var.2__MA0730.1 2.556253678709108 - +chr1 84997407 84997423 RARA_var.2__MA0730.1 3.045103170013445 + +chr1 85048389 85048405 RARA_var.2__MA0730.1 1.759186768937880 + +chr1 85259705 85259721 RARA_var.2__MA0730.1 1.651400846404945 - +chr1 85465089 85465105 RARA_var.2__MA0730.1 1.914163002755318 + +chr1 85707873 85707889 RARA_var.2__MA0730.1 4.669290679563379 - +chr1 87152203 87152219 RARA_var.2__MA0730.1 2.417527740615818 - +chr1 88683754 88683770 RARA_var.2__MA0730.1 5.039854675507665 + +chr1 88683765 88683781 RARA_var.2__MA0730.1 1.811167387641576 + +chr1 89822070 89822086 RARA_var.2__MA0730.1 1.770453353086226 - +chr1 91572124 91572140 RARA_var.2__MA0730.1 2.295899379647281 - +chr1 92961070 92961086 RARA_var.2__MA0730.1 6.207723338258989 + +chr1 93615531 93615547 RARA_var.2__MA0730.1 3.635948683834109 + +chr1 93693381 93693397 RARA_var.2__MA0730.1 7.948434913743795 - +chr1 93909744 93909760 RARA_var.2__MA0730.1 1.668182364106818 + +chr1 94541616 94541632 RARA_var.2__MA0730.1 4.146301624857012 + +chr1 94720632 94720648 RARA_var.2__MA0730.1 1.714703428547611 - +chr1 95095626 95095642 RARA_var.2__MA0730.1 1.683078358340925 - +chr1 95234036 95234052 RARA_var.2__MA0730.1 2.042845097462634 - +chr1 97138461 97138477 RARA_var.2__MA0730.1 6.408711521608146 + +chr1 98054502 98054518 RARA_var.2__MA0730.1 3.651175564942391 + +chr1 99218789 99218805 RARA_var.2__MA0730.1 6.226772042685506 - +chr1 99750060 99750076 RARA_var.2__MA0730.1 1.818608057789996 - +chr1 99759121 99759137 RARA_var.2__MA0730.1 2.837852981353883 - +chr1 100377747 100377763 RARA_var.2__MA0730.1 2.185548285984325 + +chr1 100895197 100895213 RARA_var.2__MA0730.1 7.113464676846773 - +chr1 100896398 100896414 RARA_var.2__MA0730.1 5.754735414261464 - +chr1 100896416 100896432 RARA_var.2__MA0730.1 1.863408133478698 + +chr1 101025935 101025951 RARA_var.2__MA0730.1 6.804835195141326 + +chr1 101026234 101026250 RARA_var.2__MA0730.1 1.839239612399074 + +chr1 101128565 101128581 RARA_var.2__MA0730.1 3.978535508380783 - +chr1 101247682 101247698 RARA_var.2__MA0730.1 4.051094932770436 - +chr1 101258150 101258166 RARA_var.2__MA0730.1 6.009047215778254 - +chr1 102434613 102434629 RARA_var.2__MA0730.1 6.371124878684971 + +chr1 103517727 103517743 RARA_var.2__MA0730.1 2.385150755689465 + +chr1 106996111 106996127 RARA_var.2__MA0730.1 6.678691471624735 - +chr1 107016239 107016255 RARA_var.2__MA0730.1 2.578270670883658 + +chr1 107460265 107460281 RARA_var.2__MA0730.1 2.406170446437488 + +chr1 107936525 107936541 RARA_var.2__MA0730.1 2.718447467303134 - +chr1 107950363 107950379 RARA_var.2__MA0730.1 2.602981730726443 + +chr1 107964761 107964777 RARA_var.2__MA0730.1 1.832353349601533 + +chr1 109090998 109091014 RARA_var.2__MA0730.1 1.750632250220813 - +chr1 109620043 109620059 RARA_var.2__MA0730.1 5.268549952153370 + +chr1 111128346 111128362 RARA_var.2__MA0730.1 6.821975455979784 + +chr1 111204413 111204429 RARA_var.2__MA0730.1 2.918659311734340 - +chr1 112466371 112466387 RARA_var.2__MA0730.1 3.047865267757047 + +chr1 112955985 112956001 RARA_var.2__MA0730.1 3.109040525881193 + +chr1 113073381 113073397 RARA_var.2__MA0730.1 3.858557898485187 + +chr1 113905201 113905217 RARA_var.2__MA0730.1 9.489669321331991 - +chr1 114780434 114780450 RARA_var.2__MA0730.1 7.606458675060004 - +chr1 116504516 116504532 RARA_var.2__MA0730.1 3.316559303378310 + +chr1 116515457 116515473 RARA_var.2__MA0730.1 5.673427438341451 + +chr1 116597468 116597484 RARA_var.2__MA0730.1 1.481068692757848 - +chr1 116737904 116737920 RARA_var.2__MA0730.1 2.847202013789882 - +chr1 116738960 116738976 RARA_var.2__MA0730.1 5.730429591351657 + +chr1 117001382 117001398 RARA_var.2__MA0730.1 1.622478385673024 + +chr1 117930073 117930089 RARA_var.2__MA0730.1 5.012278474709068 - +chr1 119266673 119266689 RARA_var.2__MA0730.1 1.607300918586288 - +chr1 119661994 119662010 RARA_var.2__MA0730.1 2.979611669403839 + +chr1 120844537 120844553 RARA_var.2__MA0730.1 1.790713468982233 - +chr1 144419053 144419069 RARA_var.2__MA0730.1 2.306929850566493 + +chr1 145845858 145845874 RARA_var.2__MA0730.1 3.641252965737595 + +chr1 145918539 145918555 RARA_var.2__MA0730.1 3.385532061118898 - +chr1 147243511 147243527 RARA_var.2__MA0730.1 4.860167304203633 - +chr1 148334758 148334774 RARA_var.2__MA0730.1 5.375264131040716 + +chr1 150236208 150236224 RARA_var.2__MA0730.1 1.813690670435743 + +chr1 150294074 150294090 RARA_var.2__MA0730.1 3.476878932362067 - +chr1 150562498 150562514 RARA_var.2__MA0730.1 13.089125494193642 + +chr1 150611812 150611828 RARA_var.2__MA0730.1 4.593687107468468 - +chr1 151008461 151008477 RARA_var.2__MA0730.1 3.027922032684291 + +chr1 151156509 151156525 RARA_var.2__MA0730.1 2.806405446916699 - +chr1 151157142 151157158 RARA_var.2__MA0730.1 3.875767130370414 + +chr1 151327267 151327283 RARA_var.2__MA0730.1 5.926538754220841 - +chr1 151458120 151458136 RARA_var.2__MA0730.1 1.799357273886236 - 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146052140 RBPJ_MA1116.1 8.648846806012362 - +chr1 146376848 146376857 RBPJ_MA1116.1 9.047614276896216 - +chr1 146376911 146376920 RBPJ_MA1116.1 8.648846806012363 + +chr1 146387178 146387187 RBPJ_MA1116.1 8.385225412028561 + +chr1 146387545 146387554 RBPJ_MA1116.1 8.411481445503412 + +chr1 147084667 147084676 RBPJ_MA1116.1 8.423004206265993 - +chr1 147172136 147172145 RBPJ_MA1116.1 8.493664110273786 - +chr1 147172190 147172199 RBPJ_MA1116.1 8.590694469231309 + +chr1 148038803 148038812 RBPJ_MA1116.1 8.648846806012362 - +chr1 148038866 148038875 RBPJ_MA1116.1 9.047614276896216 + +chr1 148334720 148334729 RBPJ_MA1116.1 9.047614276896216 + +chr1 148522706 148522715 RBPJ_MA1116.1 8.648846806012363 + +chr1 149899568 149899577 RBPJ_MA1116.1 8.683031545019812 - +chr1 150255874 150255883 RBPJ_MA1116.1 8.525565378661096 + +chr1 150268820 150268829 RBPJ_MA1116.1 8.616851389717509 + +chr1 150321345 150321354 RBPJ_MA1116.1 9.015237349627807 + +chr1 150364316 150364325 RBPJ_MA1116.1 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160262237 RBPJ_MA1116.1 8.514042617898514 + +chr1 160285033 160285042 RBPJ_MA1116.1 8.282664239633458 - +chr1 160712107 160712116 RBPJ_MA1116.1 9.152746963410060 - +chr1 160712200 160712209 RBPJ_MA1116.1 8.694554305782397 + +chr1 160712360 160712369 RBPJ_MA1116.1 8.580470372624710 - +chr1 160768314 160768323 RBPJ_MA1116.1 8.501088633304436 - +chr1 160838061 160838070 RBPJ_MA1116.1 8.457188945273447 - +chr1 160862891 160862900 RBPJ_MA1116.1 8.467279130330382 - +chr1 161020997 161021006 RBPJ_MA1116.1 8.569840302725485 + +chr1 161021112 161021121 RBPJ_MA1116.1 8.922900273839304 + +chr1 161098404 161098413 RBPJ_MA1116.1 8.512610042192868 + +chr1 161117698 161117707 RBPJ_MA1116.1 8.501088633304436 - +chr1 161177405 161177414 RBPJ_MA1116.1 8.359353538492593 - +chr1 161389960 161389969 RBPJ_MA1116.1 8.956777922621560 - +chr1 161440540 161440549 RBPJ_MA1116.1 8.411481445503412 - +chr1 161621731 161621740 RBPJ_MA1116.1 8.717979986406963 - +chr1 161706951 161706960 RBPJ_MA1116.1 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168466726 RBPJ_MA1116.1 8.366828249879887 + +chr1 168510170 168510179 RBPJ_MA1116.1 8.947377019195963 - +chr1 169012891 169012900 RBPJ_MA1116.1 8.569840302725485 + +chr1 169024977 169024986 RBPJ_MA1116.1 8.489565872541855 + +chr1 169586376 169586385 RBPJ_MA1116.1 8.922900273839304 + +chr1 169680993 169681002 RBPJ_MA1116.1 8.501088633304436 - +chr1 169681037 169681046 RBPJ_MA1116.1 8.726931233050804 - +chr1 169698001 169698010 RBPJ_MA1116.1 8.580470372624713 + +chr1 169916001 169916010 RBPJ_MA1116.1 8.591993133387295 + +chr1 170872636 170872645 RBPJ_MA1116.1 8.602217229993892 + +chr1 171188642 171188651 RBPJ_MA1116.1 9.072091022252875 + +chr1 172532714 172532723 RBPJ_MA1116.1 8.385225412028561 + +chr1 172725254 172725263 RBPJ_MA1116.1 8.730935322875192 + +chr1 172725599 172725608 RBPJ_MA1116.1 8.730935322875192 + +chr1 173868118 173868127 RBPJ_MA1116.1 8.387004700146752 - +chr1 174874889 174874898 RBPJ_MA1116.1 8.730935322875192 - +chr1 174969120 174969129 RBPJ_MA1116.1 8.751407978407464 - +chr1 175023514 175023523 RBPJ_MA1116.1 8.256792366097493 + +chr1 175029968 175029977 RBPJ_MA1116.1 8.524132802955450 - +chr1 175142016 175142025 RBPJ_MA1116.1 8.947377019195963 + +chr1 176897497 176897506 RBPJ_MA1116.1 8.726931233050804 + +chr1 178032050 178032059 RBPJ_MA1116.1 8.691559343100588 - +chr1 178055975 178055984 RBPJ_MA1116.1 8.468711706036029 + +chr1 178067420 178067429 RBPJ_MA1116.1 8.354627772878345 + +chr1 178543050 178543059 RBPJ_MA1116.1 8.846248422506509 - +chr1 178579731 178579740 RBPJ_MA1116.1 8.486189398886491 - +chr1 178934579 178934588 RBPJ_MA1116.1 8.461712653529831 + +chr1 178973359 178973368 RBPJ_MA1116.1 9.015237349627807 - +chr1 179025930 179025939 RBPJ_MA1116.1 8.691559343100588 + +chr1 179229685 179229694 RBPJ_MA1116.1 8.945255161858977 + +chr1 179815078 179815087 RBPJ_MA1116.1 9.152746963410060 - +chr1 179882742 179882751 RBPJ_MA1116.1 8.612847299893120 + +chr1 179954966 179954975 RBPJ_MA1116.1 8.719412562112611 - +chr1 180631813 180631822 RBPJ_MA1116.1 8.525565378661096 - +chr1 181033611 181033620 RBPJ_MA1116.1 8.787962174175796 + +chr1 181034234 181034243 RBPJ_MA1116.1 8.179855467814464 - +chr1 181044539 181044548 RBPJ_MA1116.1 8.854216750226458 - +chr1 181062231 181062240 RBPJ_MA1116.1 8.514042617898514 + +chr1 181062512 181062521 RBPJ_MA1116.1 8.499656057598791 + +chr1 181062541 181062550 RBPJ_MA1116.1 8.616851389717509 + +chr1 181105541 181105550 RBPJ_MA1116.1 8.574320051430970 + +chr1 181134752 181134761 RBPJ_MA1116.1 8.326774553866322 + +chr1 181430528 181430537 RBPJ_MA1116.1 8.312096434591805 - +chr1 181485724 181485733 RBPJ_MA1116.1 8.683031545019812 - +chr1 181514586 181514595 RBPJ_MA1116.1 8.616851389717509 - +chr1 182029920 182029929 RBPJ_MA1116.1 8.411481445503412 + +chr1 182391434 182391443 RBPJ_MA1116.1 8.730935322875192 - +chr1 182391960 182391969 RBPJ_MA1116.1 8.385225412028561 + +chr1 182615397 182615406 RBPJ_MA1116.1 8.789394749881442 - +chr1 183071409 183071418 RBPJ_MA1116.1 8.821771677149849 + +chr1 183471191 183471200 RBPJ_MA1116.1 8.488133296836207 - +chr1 183471617 183471626 RBPJ_MA1116.1 8.366150533640930 + +chr1 183471736 183471745 RBPJ_MA1116.1 8.486189398886491 + +chr1 183481266 183481275 RBPJ_MA1116.1 8.243344765170759 - +chr1 183481278 183481287 RBPJ_MA1116.1 8.436810437648717 - +chr1 183481286 183481295 RBPJ_MA1116.1 8.366150533640930 + +chr1 183604313 183604322 RBPJ_MA1116.1 8.624370060655703 + +chr1 183604723 183604732 RBPJ_MA1116.1 8.699034054487882 - +chr1 183897521 183897530 RBPJ_MA1116.1 8.719412562112611 - +chr1 184037518 184037527 RBPJ_MA1116.1 8.947377019195963 - +chr1 184754323 184754332 RBPJ_MA1116.1 8.512610042192867 - +chr1 184755336 184755345 RBPJ_MA1116.1 8.751407978407464 - +chr1 184941553 184941562 RBPJ_MA1116.1 8.616851389717509 + +chr1 184941672 184941681 RBPJ_MA1116.1 9.277460966466972 + +chr1 185156415 185156424 RBPJ_MA1116.1 8.457188945273447 - +chr1 185157200 185157209 RBPJ_MA1116.1 8.739885217644881 - +chr1 185170488 185170497 RBPJ_MA1116.1 8.179855467814464 - +chr1 185338898 185338907 RBPJ_MA1116.1 8.854216750226460 + +chr1 185596071 185596080 RBPJ_MA1116.1 8.489565872541855 + +chr1 185596080 185596089 RBPJ_MA1116.1 8.457188945273447 - +chr1 186194485 186194494 RBPJ_MA1116.1 8.514042617898514 - +chr1 186375186 186375195 RBPJ_MA1116.1 9.015237349627807 + +chr1 186375283 186375292 RBPJ_MA1116.1 8.947377019195963 + +chr1 186375374 186375383 RBPJ_MA1116.1 8.694554305782397 + +chr1 186375816 186375825 RBPJ_MA1116.1 8.366150533640930 + +chr1 186518995 186519004 RBPJ_MA1116.1 9.047614276896216 + +chr1 186829041 186829050 RBPJ_MA1116.1 8.569840302725485 + +chr1 186849938 186849947 RBPJ_MA1116.1 8.282664239633460 + +chr1 187948321 187948330 RBPJ_MA1116.1 8.719412562112611 + +chr1 187985870 187985879 RBPJ_MA1116.1 8.612847299893119 - +chr1 187986956 187986965 RBPJ_MA1116.1 8.726931233050804 + +chr1 187987009 187987018 RBPJ_MA1116.1 8.378351010642470 - +chr1 188050408 188050417 RBPJ_MA1116.1 8.256792366097491 - +chr1 192639826 192639835 RBPJ_MA1116.1 8.423004206265997 + +chr1 192984209 192984218 RBPJ_MA1116.1 8.398527460909337 + +chr1 193059468 193059477 RBPJ_MA1116.1 8.821771677149849 - +chr1 193059708 193059717 RBPJ_MA1116.1 8.739885217644881 - +chr1 193540250 193540259 RBPJ_MA1116.1 8.789394749881442 - +chr1 196217076 196217085 RBPJ_MA1116.1 8.590694469231309 + +chr1 197146400 197146409 RBPJ_MA1116.1 8.457188945273447 - +chr1 197201122 197201131 RBPJ_MA1116.1 9.277460966466972 - +chr1 197201177 197201186 RBPJ_MA1116.1 8.616851389717509 - +chr1 197201194 197201203 RBPJ_MA1116.1 9.047614276896216 + +chr1 197776475 197776484 RBPJ_MA1116.1 8.956777922621560 + +chr1 197776806 197776815 RBPJ_MA1116.1 8.179855467814464 + +chr1 199173492 199173501 RBPJ_MA1116.1 8.398527460909333 - +chr1 199274107 199274116 RBPJ_MA1116.1 8.844815846800863 + +chr1 199274223 199274232 RBPJ_MA1116.1 8.179855467814464 + +chr1 200410059 200410068 RBPJ_MA1116.1 8.558317541962900 + +chr1 200866789 200866798 RBPJ_MA1116.1 8.945255161858977 - +chr1 201171231 201171240 RBPJ_MA1116.1 8.789394749881442 - +chr1 201480723 201480732 RBPJ_MA1116.1 8.486189398886491 - +chr1 201482117 201482126 RBPJ_MA1116.1 8.461712653529831 - +chr1 201482629 201482638 RBPJ_MA1116.1 8.694554305782397 + +chr1 202010413 202010422 RBPJ_MA1116.1 8.683031545019812 - +chr1 202615848 202615857 RBPJ_MA1116.1 8.612847299893119 - +chr1 202888531 202888540 RBPJ_MA1116.1 8.282664239633460 + +chr1 203305563 203305572 RBPJ_MA1116.1 8.354627772878345 - +chr1 203327401 203327410 RBPJ_MA1116.1 8.739885217644881 + +chr1 203381148 203381157 RBPJ_MA1116.1 8.469187364917126 + +chr1 203796067 203796076 RBPJ_MA1116.1 8.945255161858977 - +chr1 203861544 203861553 RBPJ_MA1116.1 9.015237349627807 - +chr1 204480775 204480784 RBPJ_MA1116.1 8.368950107216873 + +chr1 204506802 204506811 RBPJ_MA1116.1 8.751407978407464 - +chr1 204807499 204807508 RBPJ_MA1116.1 8.179855467814464 + +chr1 205313943 205313952 RBPJ_MA1116.1 9.015237349627807 - +chr1 205775485 205775494 RBPJ_MA1116.1 8.683031545019812 - +chr1 206563111 206563120 RBPJ_MA1116.1 8.267821510527419 + +chr1 206563325 206563334 RBPJ_MA1116.1 8.846248422506509 + +chr1 206580141 206580150 RBPJ_MA1116.1 8.616851389717509 + +chr1 206635536 206635545 RBPJ_MA1116.1 8.457188945273447 - +chr1 206717580 206717589 RBPJ_MA1116.1 8.501088633304436 + +chr1 206769238 206769247 RBPJ_MA1116.1 8.694554305782397 + +chr1 206769704 206769713 RBPJ_MA1116.1 8.524132802955450 - +chr1 207053075 207053084 RBPJ_MA1116.1 8.739885217644881 + +chr1 207414874 207414883 RBPJ_MA1116.1 8.486189398886491 + +chr1 207415030 207415039 RBPJ_MA1116.1 8.730935322875192 - +chr1 207496599 207496608 RBPJ_MA1116.1 8.890523346570895 - +chr1 207869192 207869201 RBPJ_MA1116.1 8.743687250111407 - diff --git a/demo/known_tfbs_chr1_hg38/RELA_MA0107.1.bed b/demo/known_tfbs_chr1_hg38/RELA_MA0107.1.bed new file mode 100644 index 0000000..6e31181 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/RELA_MA0107.1.bed @@ -0,0 +1,472 @@ +chr1 1157714 1157723 RELA_MA0107.1 7.943617790224604 + +chr1 1231715 1231724 RELA_MA0107.1 7.538142786514356 - +chr1 1678167 1678176 RELA_MA0107.1 7.250462797380719 + +chr1 1891100 1891109 RELA_MA0107.1 9.242894713780943 - +chr1 1908947 1908956 RELA_MA0107.1 8.247964335283486 - +chr1 2195307 2195316 RELA_MA0107.1 10.341490336060160 + +chr1 2555880 2555889 RELA_MA0107.1 6.962782808247081 - +chr1 2556177 2556186 RELA_MA0107.1 7.795980510237932 - +chr1 2577611 2577620 RELA_MA0107.1 10.341490336060160 - +chr1 6026897 6026906 RELA_MA0107.1 7.250462797380719 + +chr1 6026898 6026907 RELA_MA0107.1 9.466026702827619 + +chr1 6206072 6206081 RELA_MA0107.1 9.466026702827619 + +chr1 6206073 6206082 RELA_MA0107.1 8.906413593450472 - +chr1 6359792 6359801 RELA_MA0107.1 10.793474161105713 - +chr1 6785035 6785044 RELA_MA0107.1 8.262059731803420 + +chr1 6785064 6785073 RELA_MA0107.1 8.549739720937058 - +chr1 6785228 6785237 RELA_MA0107.1 9.329893401637458 + +chr1 8427702 8427711 RELA_MA0107.1 7.508300521104294 - +chr1 8817318 8817327 RELA_MA0107.1 8.262059731803420 + +chr1 9037542 9037551 RELA_MA0107.1 8.262059731803420 - +chr1 9164070 9164079 RELA_MA0107.1 6.470309116680319 - +chr1 9413737 9413746 RELA_MA0107.1 9.694878538826497 - +chr1 9539748 9539757 RELA_MA0107.1 6.168533731026747 + +chr1 9687428 9687437 RELA_MA0107.1 7.838579923616432 + +chr1 9687428 9687437 RELA_MA0107.1 7.615447934569758 - +chr1 9687429 9687438 RELA_MA0107.1 11.545457307084359 - +chr1 9942965 9942974 RELA_MA0107.1 9.694878538826497 - +chr1 9943282 9943291 RELA_MA0107.1 8.454429768404918 + +chr1 9943283 9943292 RELA_MA0107.1 7.386596098570880 - +chr1 10033147 10033156 RELA_MA0107.1 8.262059731803420 + +chr1 10210289 10210298 RELA_MA0107.1 7.990126611559910 - +chr1 10430444 10430453 RELA_MA0107.1 8.683281604403795 - +chr1 10965513 10965522 RELA_MA0107.1 8.166749779271280 + +chr1 10965514 10965523 RELA_MA0107.1 8.618733604316834 - +chr1 10986232 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3656515 RELB_MA1117.1 6.954386653511111 + +chr1 3900324 3900334 RELB_MA1117.1 8.295435252041647 + +chr1 6026896 6026906 RELB_MA1117.1 7.152978973860272 - +chr1 6206070 6206080 RELB_MA1117.1 10.320471710335594 - +chr1 6393136 6393146 RELB_MA1117.1 8.545828523654766 - +chr1 6394010 6394020 RELB_MA1117.1 7.868271511309104 - +chr1 6490594 6490604 RELB_MA1117.1 8.814798185441129 - +chr1 7954450 7954460 RELB_MA1117.1 7.071094801276013 + +chr1 9163788 9163798 RELB_MA1117.1 7.121092982946143 + +chr1 9413357 9413367 RELB_MA1117.1 7.646243236710893 - +chr1 9589240 9589250 RELB_MA1117.1 7.008515169470170 - +chr1 9687425 9687435 RELB_MA1117.1 7.053857637044881 - +chr1 9687430 9687440 RELB_MA1117.1 7.725217113542191 + +chr1 9943284 9943294 RELB_MA1117.1 9.102692870695730 + +chr1 10399167 10399177 RELB_MA1117.1 7.427626166264475 - +chr1 10430348 10430358 RELB_MA1117.1 7.177284621675032 + +chr1 10965728 10965738 RELB_MA1117.1 8.514681904832756 - +chr1 12040017 12040027 RELB_MA1117.1 7.293854704274761 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2548525 REL_MA0101.1 7.388815046945045 - +chr1 2548860 2548869 REL_MA0101.1 7.976600045186054 - +chr1 2556045 2556054 REL_MA0101.1 7.388805672164769 + +chr1 2556046 2556055 REL_MA0101.1 7.388817269147515 + +chr1 2577611 2577620 REL_MA0101.1 10.096841915025028 - +chr1 2578468 2578477 REL_MA0101.1 7.976600045186054 + +chr1 2578487 2578496 REL_MA0101.1 7.388815046945045 + +chr1 2586082 2586091 REL_MA0101.1 8.264270451203803 + +chr1 3491617 3491626 REL_MA0101.1 7.506597353438414 - +chr1 3796552 3796561 REL_MA0101.1 7.388817269147515 - +chr1 3796553 3796562 REL_MA0101.1 7.388805672164768 - +chr1 6026897 6026906 REL_MA0101.1 8.199730888426235 + +chr1 6199728 6199737 REL_MA0101.1 7.388807894367237 + +chr1 6206072 6206081 REL_MA0101.1 9.586017957920149 + +chr1 6359792 6359801 REL_MA0101.1 9.509057472336488 - +chr1 6394068 6394077 REL_MA0101.1 7.429637805349042 - +chr1 6490062 6490071 REL_MA0101.1 7.388817269147515 + +chr1 6602433 6602442 REL_MA0101.1 7.794279321721613 - +chr1 6702101 6702110 REL_MA0101.1 7.388817269147515 + +chr1 6784975 6784984 REL_MA0101.1 7.388817269147515 - +chr1 6784976 6784985 REL_MA0101.1 8.081949727739362 - +chr1 6785228 6785237 REL_MA0101.1 9.626840160771675 + +chr1 8427702 8427711 REL_MA0101.1 7.388815046945045 - +chr1 9163787 9163796 REL_MA0101.1 8.264270451203801 - +chr1 9234406 9234415 REL_MA0101.1 8.122772486143358 - +chr1 9413737 9413746 REL_MA0101.1 8.998235181881610 - +chr1 9413738 9413747 REL_MA0101.1 8.264270451203801 - +chr1 9539878 9539887 REL_MA0101.1 7.506598290932701 - +chr1 9687429 9687438 REL_MA0101.1 10.279162638489469 - +chr1 9823634 9823643 REL_MA0101.1 8.081949727739362 + +chr1 9942965 9942974 REL_MA0101.1 8.998235181881610 - +chr1 9942966 9942975 REL_MA0101.1 7.794268696950449 - +chr1 10399056 10399065 REL_MA0101.1 8.592774240396711 + +chr1 10430444 10430453 REL_MA0101.1 8.528233427628258 - +chr1 10965513 10965522 REL_MA0101.1 8.892873902345556 + +chr1 10986192 10986201 REL_MA0101.1 8.592774240396711 + +chr1 11680850 11680859 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112956035 RFX5_MA0510.2 3.957013183766686 + +chr1 113759158 113759173 RFX5_MA0510.2 11.846430049767596 + +chr1 113759158 113759173 RFX5_MA0510.2 11.362381787072042 - +chr1 113759331 113759346 RFX5_MA0510.2 5.698456590109447 + +chr1 113759331 113759346 RFX5_MA0510.2 5.897147212694779 - +chr1 115099482 115099497 RFX5_MA0510.2 5.085229656043456 + +chr1 115099482 115099497 RFX5_MA0510.2 5.461188290544587 - +chr1 115649632 115649647 RFX5_MA0510.2 4.479328181328831 + +chr1 115649632 115649647 RFX5_MA0510.2 5.505129739807661 - +chr1 116373155 116373170 RFX5_MA0510.2 8.273743721221358 + +chr1 116373155 116373170 RFX5_MA0510.2 7.612302064731324 - +chr1 116737731 116737746 RFX5_MA0510.2 5.171939576678064 + +chr1 116737731 116737746 RFX5_MA0510.2 4.681782817526592 - +chr1 120914128 120914143 RFX5_MA0510.2 13.460139775006125 + +chr1 120914128 120914143 RFX5_MA0510.2 12.512296113681025 - +chr1 145214946 145214961 RFX5_MA0510.2 12.512296113681025 + +chr1 145214946 145214961 RFX5_MA0510.2 13.460139775006125 - +chr1 145859257 145859272 RFX5_MA0510.2 5.474122685387794 + +chr1 145859257 145859272 RFX5_MA0510.2 6.722660266190742 - +chr1 145979731 145979746 RFX5_MA0510.2 7.474863135328493 + +chr1 145979731 145979746 RFX5_MA0510.2 7.622046370930863 - +chr1 148458909 148458924 RFX5_MA0510.2 12.512296113681025 + +chr1 148458909 148458924 RFX5_MA0510.2 13.460139775006125 - +chr1 150293774 150293789 RFX5_MA0510.2 7.107837974187071 + +chr1 150293774 150293789 RFX5_MA0510.2 5.419811615972476 - +chr1 150611576 150611591 RFX5_MA0510.2 6.361903508446405 + +chr1 150611576 150611591 RFX5_MA0510.2 6.473650833837396 - +chr1 150611604 150611619 RFX5_MA0510.2 4.426191230433375 + +chr1 150611604 150611619 RFX5_MA0510.2 5.072480093077191 - +chr1 151327641 151327656 RFX5_MA0510.2 4.667517166191162 - +chr1 153671139 153671154 RFX5_MA0510.2 4.030961533950342 - +chr1 153977422 153977437 RFX5_MA0510.2 4.062647079303385 + +chr1 154183405 154183420 RFX5_MA0510.2 14.858888672299903 + +chr1 154183405 154183420 RFX5_MA0510.2 14.767752072624059 - +chr1 155194930 155194945 RFX5_MA0510.2 10.944911640306179 + +chr1 155194930 155194945 RFX5_MA0510.2 11.053451997694550 - +chr1 155208746 155208761 RFX5_MA0510.2 11.095904709250267 + +chr1 155208746 155208761 RFX5_MA0510.2 10.837059692908104 - +chr1 155323741 155323756 RFX5_MA0510.2 4.398078878925615 + +chr1 156106368 156106383 RFX5_MA0510.2 11.747762380819559 + +chr1 156106368 156106383 RFX5_MA0510.2 11.208196013622517 - +chr1 158286525 158286540 RFX5_MA0510.2 5.299841867367428 - diff --git a/demo/known_tfbs_chr1_hg38/RHOXF1_MA0719.1.bed b/demo/known_tfbs_chr1_hg38/RHOXF1_MA0719.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/RORA_MA0071.1.bed b/demo/known_tfbs_chr1_hg38/RORA_MA0071.1.bed new file mode 100644 index 0000000..48664d9 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/RORA_MA0071.1.bed @@ -0,0 +1,119 @@ +chr1 1678187 1678196 RORA_MA0071.1 8.714075861533892 - +chr1 3666655 3666664 RORA_MA0071.1 8.175082237767620 - +chr1 7771148 7771157 RORA_MA0071.1 7.797791796267029 - +chr1 7954120 7954129 RORA_MA0071.1 7.710791163998399 - +chr1 7954310 7954319 RORA_MA0071.1 8.308617142251462 + +chr1 9181541 9181550 RORA_MA0071.1 8.357400739029593 - +chr1 10985486 10985495 RORA_MA0071.1 7.615481628130063 - +chr1 13749622 13749631 RORA_MA0071.1 7.893101332135366 - +chr1 14914090 14914099 RORA_MA0071.1 8.942915599555610 + +chr1 15617714 15617723 RORA_MA0071.1 7.893101332135366 - +chr1 19312320 19312329 RORA_MA0071.1 8.239618139877425 - +chr1 19477582 19477591 RORA_MA0071.1 9.453740112212959 + +chr1 19485538 19485547 RORA_MA0071.1 7.749002247171719 + +chr1 19799480 19799489 RORA_MA0071.1 9.097070942025836 - +chr1 19799522 19799531 RORA_MA0071.1 8.868225251686940 - +chr1 20507901 20507910 RORA_MA0071.1 8.403936261231522 - +chr1 21334246 21334255 RORA_MA0071.1 8.462762226901260 - +chr1 26743984 26743993 RORA_MA0071.1 8.203255654379793 - +chr1 27659623 27659632 RORA_MA0071.1 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8.714080167037142 - +chr1 56565190 56565199 RORA_MA0071.1 7.903148165148603 + +chr1 56565353 56565362 RORA_MA0071.1 8.249770502322487 + +chr1 57167931 57167940 RORA_MA0071.1 10.013355007292700 + +chr1 58392287 58392296 RORA_MA0071.1 9.251216860002719 - +chr1 58573906 58573915 RORA_MA0071.1 8.403936261231522 + +chr1 59020618 59020627 RORA_MA0071.1 8.740392347345372 + +chr1 59433035 59433044 RORA_MA0071.1 7.710791163998399 - +chr1 59697086 59697095 RORA_MA0071.1 9.251216860002719 + +chr1 61332872 61332881 RORA_MA0071.1 9.656679884788399 - +chr1 61725581 61725590 RORA_MA0071.1 9.725675018159061 - +chr1 62160048 62160057 RORA_MA0071.1 8.426395872400253 - +chr1 64898618 64898627 RORA_MA0071.1 7.797786677276934 - +chr1 64957052 64957061 RORA_MA0071.1 9.502530494635351 + +chr1 65068467 65068476 RORA_MA0071.1 8.691601964922979 + +chr1 66336114 66336123 RORA_MA0071.1 7.998462820007032 - +chr1 66336409 66336418 RORA_MA0071.1 8.249770502322487 + +chr1 66396944 66396953 RORA_MA0071.1 8.134262604322936 - +chr1 66649054 66649063 RORA_MA0071.1 7.592993842904176 + +chr1 66758355 66758364 RORA_MA0071.1 7.664257725110274 + +chr1 67166383 67166392 RORA_MA0071.1 9.561371182247148 + +chr1 67172171 67172180 RORA_MA0071.1 9.050546669589799 + +chr1 67214379 67214388 RORA_MA0071.1 9.119538886319573 - +chr1 69382908 69382917 RORA_MA0071.1 9.001756287167407 + +chr1 70504997 70505006 RORA_MA0071.1 8.239618139877425 + +chr1 72623290 72623299 RORA_MA0071.1 10.349824982021522 + +chr1 74674538 74674547 RORA_MA0071.1 8.239618139877425 + +chr1 74812447 74812456 RORA_MA0071.1 8.203255654379793 - +chr1 75785496 75785505 RORA_MA0071.1 8.868225251686940 + +chr1 76154890 76154899 RORA_MA0071.1 8.511553045823527 + +chr1 76294714 76294723 RORA_MA0071.1 9.251216860002719 + +chr1 77219576 77219585 RORA_MA0071.1 9.907993519421032 - +chr1 77414032 77414041 RORA_MA0071.1 8.308617142251462 + +chr1 78143148 78143157 RORA_MA0071.1 8.511553045823527 - +chr1 78277537 78277546 RORA_MA0071.1 7.951942019747163 - +chr1 78655963 78655972 RORA_MA0071.1 8.762866680456160 + +chr1 79041115 79041124 RORA_MA0071.1 8.760595014979836 - +chr1 80218301 80218310 RORA_MA0071.1 7.615471211691256 + +chr1 81548278 81548287 RORA_MA0071.1 8.288408522299820 - +chr1 81549407 81549416 RORA_MA0071.1 9.907993519421032 - +chr1 83485991 83486000 RORA_MA0071.1 7.710782830873394 + +chr1 83500234 83500243 RORA_MA0071.1 8.586246429368488 + +chr1 83501180 83501189 RORA_MA0071.1 8.249770502322487 - +chr1 83508271 83508280 RORA_MA0071.1 9.224900374191241 + +chr1 84090640 84090649 RORA_MA0071.1 7.615471211691256 - +chr1 84574235 84574244 RORA_MA0071.1 9.561370348920063 - +chr1 86395695 86395704 RORA_MA0071.1 8.357400739029593 + +chr1 86396093 86396102 RORA_MA0071.1 8.249770502322487 + +chr1 87045800 87045809 RORA_MA0071.1 8.308611189934284 + +chr1 87449462 87449471 RORA_MA0071.1 8.511553045823527 + +chr1 87450091 87450100 RORA_MA0071.1 9.251216860002719 - +chr1 88868434 88868443 RORA_MA0071.1 9.656679884788399 - +chr1 89065042 89065051 RORA_MA0071.1 10.418818032078381 - +chr1 90509212 90509221 RORA_MA0071.1 7.844307477536806 - +chr1 90509908 90509917 RORA_MA0071.1 9.725675018159061 + +chr1 91022288 91022297 RORA_MA0071.1 10.601138616654154 + +chr1 91166239 91166248 RORA_MA0071.1 7.710791163998399 - +chr1 91804411 91804420 RORA_MA0071.1 8.239618139877425 + +chr1 93693392 93693401 RORA_MA0071.1 7.797791796267029 - +chr1 95073308 95073317 RORA_MA0071.1 7.797791796267029 + +chr1 95095242 95095251 RORA_MA0071.1 8.714075861533892 + +chr1 95095626 95095635 RORA_MA0071.1 7.893111748574173 - +chr1 97159127 97159136 RORA_MA0071.1 8.868225251686940 + +chr1 97864780 97864789 RORA_MA0071.1 9.119538886319573 + +chr1 99766213 99766222 RORA_MA0071.1 9.453740112212959 - +chr1 100046981 100046990 RORA_MA0071.1 8.452712358211732 + +chr1 100077185 100077194 RORA_MA0071.1 7.664257725110274 + diff --git a/demo/known_tfbs_chr1_hg38/RORA_var.2__MA0072.1.bed b/demo/known_tfbs_chr1_hg38/RORA_var.2__MA0072.1.bed new file mode 100644 index 0000000..6b2ec4a --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/RORA_var.2__MA0072.1.bed @@ -0,0 +1,108 @@ +chr1 778466 778479 RORA_var.2__MA0072.1 -0.872538417322491 - +chr1 3900116 3900129 RORA_var.2__MA0072.1 6.394438396684151 - +chr1 6784599 6784612 RORA_var.2__MA0072.1 -2.156550574630409 - +chr1 8097429 8097442 RORA_var.2__MA0072.1 -1.778480580646980 + +chr1 8764687 8764700 RORA_var.2__MA0072.1 -2.426802867177558 - +chr1 9539365 9539378 RORA_var.2__MA0072.1 -2.714484245186582 + +chr1 9943254 9943267 RORA_var.2__MA0072.1 -1.738476156393901 + +chr1 10985585 10985598 RORA_var.2__MA0072.1 -0.272141331186280 - +chr1 13713385 13713398 RORA_var.2__MA0072.1 -0.457543977596150 - +chr1 15836167 15836180 RORA_var.2__MA0072.1 -0.811137147396026 - +chr1 19251721 19251734 RORA_var.2__MA0072.1 5.935370958132792 + +chr1 20696612 20696625 RORA_var.2__MA0072.1 -2.026940919650167 - +chr1 24392063 24392076 RORA_var.2__MA0072.1 -1.742890346138317 - +chr1 26787404 26787417 RORA_var.2__MA0072.1 -1.459547057483662 + +chr1 28172783 28172796 RORA_var.2__MA0072.1 -2.569903315520076 - +chr1 28200148 28200161 RORA_var.2__MA0072.1 -2.407087434519402 - +chr1 28518981 28518994 RORA_var.2__MA0072.1 -1.330456250631747 - +chr1 28642917 28642930 RORA_var.2__MA0072.1 7.912522796068362 - +chr1 28648864 28648877 RORA_var.2__MA0072.1 10.414952792488876 - +chr1 30743938 30743951 RORA_var.2__MA0072.1 -2.659178578019764 + +chr1 31938507 31938520 RORA_var.2__MA0072.1 5.946417677754182 - +chr1 32650662 32650675 RORA_var.2__MA0072.1 13.126071583289292 - +chr1 36374133 36374146 RORA_var.2__MA0072.1 -2.362740377290965 - +chr1 37926140 37926153 RORA_var.2__MA0072.1 -2.050413562005988 + +chr1 38816109 38816122 RORA_var.2__MA0072.1 6.183132202154127 - +chr1 39195904 39195917 RORA_var.2__MA0072.1 -2.397815005258603 + +chr1 39215139 39215152 RORA_var.2__MA0072.1 -1.738476156393901 - +chr1 39215194 39215207 RORA_var.2__MA0072.1 -2.420568393196793 + +chr1 40508584 40508597 RORA_var.2__MA0072.1 -1.459547057483662 - +chr1 40665829 40665842 RORA_var.2__MA0072.1 -2.222462158088904 - +chr1 41623448 41623461 RORA_var.2__MA0072.1 -1.872005753391818 + +chr1 41751315 41751328 RORA_var.2__MA0072.1 -2.634441906101491 - +chr1 43172432 43172445 RORA_var.2__MA0072.1 6.153282471658054 - +chr1 44819516 44819529 RORA_var.2__MA0072.1 -1.093999583403115 + +chr1 45394520 45394533 RORA_var.2__MA0072.1 7.285415565019575 + +chr1 51236418 51236431 RORA_var.2__MA0072.1 -2.110133627249579 - +chr1 51285532 51285545 RORA_var.2__MA0072.1 -0.321412377764644 - +chr1 52055388 52055401 RORA_var.2__MA0072.1 -0.976216894967929 + +chr1 53890120 53890133 RORA_var.2__MA0072.1 -1.689685029927377 + +chr1 56045653 56045666 RORA_var.2__MA0072.1 -2.768877698902283 + +chr1 56045673 56045686 RORA_var.2__MA0072.1 -2.193513901221245 + +chr1 56330240 56330253 RORA_var.2__MA0072.1 -1.178861072822498 - +chr1 56565187 56565200 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RORA_var.2__MA0072.1 -0.980791526123219 - +chr1 66649016 66649029 RORA_var.2__MA0072.1 -1.943560536551239 - +chr1 66954359 66954372 RORA_var.2__MA0072.1 -1.292973966785322 + +chr1 67166380 67166393 RORA_var.2__MA0072.1 10.540635373655155 + +chr1 67172168 67172181 RORA_var.2__MA0072.1 13.626845741154002 + +chr1 67194753 67194766 RORA_var.2__MA0072.1 -2.327044331549795 - +chr1 67430470 67430483 RORA_var.2__MA0072.1 -2.204443673328944 + +chr1 68347550 68347563 RORA_var.2__MA0072.1 -2.500610940614240 - +chr1 68495961 68495974 RORA_var.2__MA0072.1 -2.636706189336830 - +chr1 69382905 69382918 RORA_var.2__MA0072.1 -2.467623333926179 + +chr1 69737554 69737567 RORA_var.2__MA0072.1 7.610830596017386 - +chr1 69737644 69737657 RORA_var.2__MA0072.1 -1.134125330124542 - +chr1 72623256 72623269 RORA_var.2__MA0072.1 -1.968998021711462 + +chr1 74734023 74734036 RORA_var.2__MA0072.1 -0.976216894967929 - +chr1 74858138 74858151 RORA_var.2__MA0072.1 -2.714484245186582 + +chr1 76939483 76939496 RORA_var.2__MA0072.1 -1.567083816154366 - +chr1 77219575 77219588 RORA_var.2__MA0072.1 -2.095143193657647 - +chr1 77414029 77414042 RORA_var.2__MA0072.1 -1.711638200984024 + +chr1 77770604 77770617 RORA_var.2__MA0072.1 4.720475395551636 - +chr1 77978598 77978611 RORA_var.2__MA0072.1 -2.050413562005988 + +chr1 77979434 77979447 RORA_var.2__MA0072.1 1.558183334785915 + +chr1 78088159 78088172 RORA_var.2__MA0072.1 -1.827270982910133 + +chr1 78277555 78277568 RORA_var.2__MA0072.1 -2.471625469548657 - +chr1 78371181 78371194 RORA_var.2__MA0072.1 -1.092303776372401 - +chr1 78377391 78377404 RORA_var.2__MA0072.1 6.051003740058899 + +chr1 78620104 78620117 RORA_var.2__MA0072.1 -0.775546704555007 + +chr1 78655960 78655973 RORA_var.2__MA0072.1 11.485386109020121 + +chr1 78854865 78854878 RORA_var.2__MA0072.1 -1.507363750910776 - +chr1 79193503 79193516 RORA_var.2__MA0072.1 -1.781858594339994 + +chr1 81548277 81548290 RORA_var.2__MA0072.1 -1.942199601910941 - +chr1 81549348 81549361 RORA_var.2__MA0072.1 -2.859848768432686 - +chr1 82153016 82153029 RORA_var.2__MA0072.1 -2.682928747450816 + +chr1 83508268 83508281 RORA_var.2__MA0072.1 -2.423131792949665 + +chr1 84506047 84506060 RORA_var.2__MA0072.1 -2.545734703142317 - +chr1 84854557 84854570 RORA_var.2__MA0072.1 -1.702883977449977 + +chr1 85335396 85335409 RORA_var.2__MA0072.1 -1.040989953947062 - +chr1 87449894 87449907 RORA_var.2__MA0072.1 -2.309020178742371 - +chr1 87464381 87464394 RORA_var.2__MA0072.1 -2.549404497614678 - +chr1 89201348 89201361 RORA_var.2__MA0072.1 -2.110612327129527 - +chr1 89201376 89201389 RORA_var.2__MA0072.1 6.980486931420814 - +chr1 89287168 89287181 RORA_var.2__MA0072.1 8.710549183286696 + +chr1 89287374 89287387 RORA_var.2__MA0072.1 -1.150688866497827 + +chr1 89719657 89719670 RORA_var.2__MA0072.1 -1.373016514202769 - +chr1 90509229 90509242 RORA_var.2__MA0072.1 7.677970633880230 - +chr1 91022310 91022323 RORA_var.2__MA0072.1 -1.855670030846319 - +chr1 91501618 91501631 RORA_var.2__MA0072.1 -2.378011740711034 - +chr1 94926881 94926894 RORA_var.2__MA0072.1 9.483723524633749 + +chr1 97163757 97163770 RORA_var.2__MA0072.1 -2.694768256976266 - +chr1 97848875 97848888 RORA_var.2__MA0072.1 -2.712788438155867 + +chr1 99766212 99766225 RORA_var.2__MA0072.1 -2.842316941194295 - +chr1 101137229 101137242 RORA_var.2__MA0072.1 -2.663510695216194 - diff --git a/demo/known_tfbs_chr1_hg38/RORB_MA1150.1.bed b/demo/known_tfbs_chr1_hg38/RORB_MA1150.1.bed new file mode 100644 index 0000000..23ac268 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/RORB_MA1150.1.bed @@ -0,0 +1,119 @@ +chr1 1678186 1678196 RORB_MA1150.1 8.899899373974973 - +chr1 3666428 3666438 RORB_MA1150.1 7.637119624363367 + +chr1 3666654 3666664 RORB_MA1150.1 7.402145398625027 - +chr1 6861570 6861580 RORB_MA1150.1 7.755621795753985 - +chr1 7954310 7954320 RORB_MA1150.1 7.524786753181369 + +chr1 9629626 9629636 RORB_MA1150.1 9.069652669814257 + +chr1 12449505 12449515 RORB_MA1150.1 7.512392760477818 + 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37926143 37926153 RORB_MA1150.1 7.911904155049472 + +chr1 39215197 39215207 RORB_MA1150.1 8.089735830755506 + +chr1 40508584 40508594 RORB_MA1150.1 7.736095835644093 - +chr1 40532020 40532030 RORB_MA1150.1 7.551377034679472 + +chr1 41623451 41623461 RORB_MA1150.1 9.589377100418217 + +chr1 42682326 42682336 RORB_MA1150.1 8.054333909233064 + +chr1 42682719 42682729 RORB_MA1150.1 7.404452273596966 + +chr1 42816814 42816824 RORB_MA1150.1 7.291734438789783 + +chr1 46247578 46247588 RORB_MA1150.1 7.762686117142199 + +chr1 47334500 47334510 RORB_MA1150.1 7.282047233191378 + +chr1 51236418 51236428 RORB_MA1150.1 7.309078210297551 - +chr1 52055391 52055401 RORB_MA1150.1 7.399020402688221 + +chr1 52404917 52404927 RORB_MA1150.1 7.702225939935843 - +chr1 56045676 56045686 RORB_MA1150.1 8.414874627750232 + +chr1 56106796 56106806 RORB_MA1150.1 8.482683824825493 - +chr1 56565190 56565200 RORB_MA1150.1 9.007575223405974 + +chr1 56565371 56565381 RORB_MA1150.1 7.854582571927095 - +chr1 58573558 58573568 RORB_MA1150.1 8.092210776410846 + +chr1 58968723 58968733 RORB_MA1150.1 7.282749470334602 + +chr1 61783018 61783028 RORB_MA1150.1 7.305055162010269 - +chr1 62160047 62160057 RORB_MA1150.1 9.131643608555015 - +chr1 63125401 63125411 RORB_MA1150.1 8.558539351196664 - +chr1 64171939 64171949 RORB_MA1150.1 7.465182683138476 + +chr1 64898617 64898627 RORB_MA1150.1 8.908884342430154 - +chr1 64898755 64898765 RORB_MA1150.1 7.723701842940544 + +chr1 64956785 64956795 RORB_MA1150.1 9.218884305868698 + +chr1 64957052 64957062 RORB_MA1150.1 7.410606138697966 + +chr1 66350516 66350526 RORB_MA1150.1 7.512392760477818 + +chr1 66397408 66397418 RORB_MA1150.1 7.291734438789783 + +chr1 66758355 66758365 RORB_MA1150.1 7.613454481087755 + +chr1 67166383 67166393 RORB_MA1150.1 8.723289975891468 + +chr1 67172171 67172181 RORB_MA1150.1 9.280875244609460 + +chr1 67214378 67214388 RORB_MA1150.1 8.583745545435427 - +chr1 69382908 69382918 RORB_MA1150.1 8.798020545623158 + +chr1 70504997 70505007 RORB_MA1150.1 7.279831418155895 + +chr1 70685451 70685461 RORB_MA1150.1 8.396326769945682 + +chr1 71053867 71053877 RORB_MA1150.1 8.396326769945682 - +chr1 72623259 72623269 RORB_MA1150.1 7.298234205840325 + +chr1 74812446 74812456 RORB_MA1150.1 8.230105550324016 - +chr1 75785496 75785506 RORB_MA1150.1 7.311980827368640 + +chr1 76154890 76154900 RORB_MA1150.1 8.704742118086916 + +chr1 77414032 77414042 RORB_MA1150.1 7.524786753181369 + +chr1 77682485 77682495 RORB_MA1150.1 7.458656631274884 + +chr1 78004697 78004707 RORB_MA1150.1 7.291734438789783 - +chr1 78143147 78143157 RORB_MA1150.1 7.900732439968449 - +chr1 78377504 78377514 RORB_MA1150.1 7.360036128486565 - +chr1 78655963 78655973 RORB_MA1150.1 10.434240328016903 + +chr1 80640837 80640847 RORB_MA1150.1 7.407278119203705 - +chr1 81548277 81548287 RORB_MA1150.1 8.220419609005399 - +chr1 83508271 83508281 RORB_MA1150.1 8.682436426411249 + +chr1 84479223 84479233 RORB_MA1150.1 8.380174943371015 + +chr1 85335396 85335406 RORB_MA1150.1 7.348896889820304 - +chr1 86395695 86395705 RORB_MA1150.1 7.529443774932368 + +chr1 87045800 87045810 RORB_MA1150.1 9.155308751830630 + +chr1 87449462 87449472 RORB_MA1150.1 8.247008626223716 + +chr1 87450190 87450200 RORB_MA1150.1 8.086056911309845 - +chr1 88192190 88192200 RORB_MA1150.1 7.959684890439922 + +chr1 88892038 88892048 RORB_MA1150.1 7.428939517365714 + +chr1 89198750 89198760 RORB_MA1150.1 8.086056911309845 - +chr1 89201348 89201358 RORB_MA1150.1 7.428939517365714 - +chr1 90509908 90509918 RORB_MA1150.1 7.431041290815282 + +chr1 92486766 92486776 RORB_MA1150.1 7.412504197329058 + +chr1 92563436 92563446 RORB_MA1150.1 7.514493704914644 + +chr1 93608196 93608206 RORB_MA1150.1 8.215796505438801 + +chr1 93615783 93615793 RORB_MA1150.1 7.565191345848290 + +chr1 94926884 94926894 RORB_MA1150.1 9.218884305868698 + +chr1 95095242 95095252 RORB_MA1150.1 8.436012017010773 + +chr1 97864780 97864790 RORB_MA1150.1 9.041479037298629 + +chr1 99752393 99752403 RORB_MA1150.1 8.243970137954429 - +chr1 100075972 100075982 RORB_MA1150.1 7.748375807977196 - +chr1 100077185 100077195 RORB_MA1150.1 7.613454481087755 + +chr1 100351510 100351520 RORB_MA1150.1 7.370933277840113 - +chr1 101052152 101052162 RORB_MA1150.1 7.529443774932368 - +chr1 101137229 101137239 RORB_MA1150.1 8.082372021899360 - +chr1 101199800 101199810 RORB_MA1150.1 7.628323419446644 - +chr1 101247909 101247919 RORB_MA1150.1 9.030581887945081 + +chr1 101388911 101388921 RORB_MA1150.1 8.203565545287507 + +chr1 101438058 101438068 RORB_MA1150.1 7.574927563628503 + +chr1 103517750 103517760 RORB_MA1150.1 9.161462616931631 - +chr1 106073245 106073255 RORB_MA1150.1 7.375556381406711 - +chr1 107132746 107132756 RORB_MA1150.1 7.439960459835962 + +chr1 107529935 107529945 RORB_MA1150.1 8.549841731542774 + +chr1 107935631 107935641 RORB_MA1150.1 9.030581887945081 - +chr1 108200667 108200677 RORB_MA1150.1 7.332630003526369 + +chr1 109532878 109532888 RORB_MA1150.1 9.047632902399631 + +chr1 110631525 110631535 RORB_MA1150.1 8.330550835979745 - +chr1 111449494 111449504 RORB_MA1150.1 7.953157318024472 + +chr1 112716114 112716124 RORB_MA1150.1 7.298901296909269 + +chr1 114780768 114780778 RORB_MA1150.1 7.562647591295402 - +chr1 115772067 115772077 RORB_MA1150.1 8.215796505438801 - +chr1 116738001 116738011 RORB_MA1150.1 7.430482998759258 + +chr1 119141026 119141036 RORB_MA1150.1 7.924985206060702 - +chr1 119348021 119348031 RORB_MA1150.1 8.071187972950954 - +chr1 119662609 119662619 RORB_MA1150.1 7.296074187022741 + +chr1 125168209 125168219 RORB_MA1150.1 8.521754606694667 - diff --git a/demo/known_tfbs_chr1_hg38/RORC_MA1151.1.bed b/demo/known_tfbs_chr1_hg38/RORC_MA1151.1.bed new file mode 100644 index 0000000..4775ec4 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/RORC_MA1151.1.bed @@ -0,0 +1,119 @@ +chr1 1678187 1678198 RORC_MA1151.1 7.797742399358722 - +chr1 3666426 3666437 RORC_MA1151.1 7.549013462032829 + +chr1 3676745 3676756 RORC_MA1151.1 7.415658891531508 + +chr1 6602893 6602904 RORC_MA1151.1 7.589483584623390 + +chr1 6861571 6861582 RORC_MA1151.1 8.104137153408459 - +chr1 9629624 9629635 RORC_MA1151.1 7.943265945975212 + +chr1 9943255 9943266 RORC_MA1151.1 7.398851930477361 + +chr1 12620038 12620049 RORC_MA1151.1 7.537148964938997 - +chr1 13713386 13713397 RORC_MA1151.1 7.390019786082124 - +chr1 15836168 15836179 RORC_MA1151.1 8.932562923604101 - +chr1 20696613 20696624 RORC_MA1151.1 9.218776440631141 - +chr1 21294688 21294699 RORC_MA1151.1 7.513631307402772 - +chr1 23720736 23720747 RORC_MA1151.1 8.061864202730298 + +chr1 23958981 23958992 RORC_MA1151.1 7.491983631568927 + +chr1 24392064 24392075 RORC_MA1151.1 8.271026865878483 - +chr1 26743984 26743995 RORC_MA1151.1 7.986537618209226 - +chr1 26787405 26787416 RORC_MA1151.1 7.918304602476877 + +chr1 28518982 28518993 RORC_MA1151.1 7.445910184983330 - +chr1 28648865 28648876 RORC_MA1151.1 10.108705808853985 - +chr1 30743939 30743950 RORC_MA1151.1 7.886797653888705 + +chr1 32650663 32650674 RORC_MA1151.1 10.334520612515602 - +chr1 33461150 33461161 RORC_MA1151.1 8.205489636959244 + +chr1 35193169 35193180 RORC_MA1151.1 8.384883791960172 + +chr1 36149947 36149958 RORC_MA1151.1 8.017033367762346 - +chr1 36374259 36374270 RORC_MA1151.1 8.108840920282642 - +chr1 36463968 36463979 RORC_MA1151.1 7.496627948434811 - +chr1 37926141 37926152 RORC_MA1151.1 8.546653672263179 + +chr1 39215195 39215206 RORC_MA1151.1 7.797742399358722 + +chr1 39215585 39215596 RORC_MA1151.1 8.136851187956843 - +chr1 40508585 40508596 RORC_MA1151.1 8.175036617362013 - +chr1 41623449 41623460 RORC_MA1151.1 8.538475558855083 + +chr1 42816812 42816823 RORC_MA1151.1 7.496213878140438 + +chr1 45550769 45550780 RORC_MA1151.1 7.409086070908527 + +chr1 46719379 46719390 RORC_MA1151.1 7.549065926387833 - +chr1 47334543 47334554 RORC_MA1151.1 7.380911533736914 - +chr1 50724794 50724805 RORC_MA1151.1 8.010868504411379 - +chr1 50968411 50968422 RORC_MA1151.1 7.435076975503240 + +chr1 51236419 51236430 RORC_MA1151.1 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151282217 RXRB_MA0855.1 1.009582749716560 + +chr1 151327234 151327247 RXRB_MA0855.1 4.838912408627247 + +chr1 152908478 152908491 RXRB_MA0855.1 1.668675886273346 - +chr1 153849622 153849635 RXRB_MA0855.1 1.551129361071855 - +chr1 154221072 154221085 RXRB_MA0855.1 -0.606820687991337 - +chr1 154272694 154272707 RXRB_MA0855.1 6.351852760476059 + +chr1 154608407 154608420 RXRB_MA0855.1 1.627835518768612 - +chr1 154860149 154860162 RXRB_MA0855.1 4.446974551546373 + +chr1 154974391 154974404 RXRB_MA0855.1 6.514975833498209 - +chr1 154974398 154974411 RXRB_MA0855.1 2.618891854598342 - +chr1 155017465 155017478 RXRB_MA0855.1 0.906505023763499 + +chr1 155194088 155194101 RXRB_MA0855.1 -0.392830298604109 + +chr1 155227349 155227362 RXRB_MA0855.1 0.431213847981762 + +chr1 155324199 155324212 RXRB_MA0855.1 0.300292150151549 + +chr1 156054574 156054587 RXRB_MA0855.1 2.648857504124097 + +chr1 156054603 156054616 RXRB_MA0855.1 -0.246062199646369 - diff --git a/demo/known_tfbs_chr1_hg38/RXRG_MA0856.1.bed b/demo/known_tfbs_chr1_hg38/RXRG_MA0856.1.bed new file mode 100644 index 0000000..f26910f --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/RXRG_MA0856.1.bed @@ -0,0 +1,238 @@ +chr1 10144 10157 RXRG_MA0856.1 4.702443340496897 - +chr1 10228 10241 RXRG_MA0856.1 4.702443340496897 - +chr1 10247 10260 RXRG_MA0856.1 2.012995005853027 - +chr1 10254 10267 RXRG_MA0856.1 2.738012928082577 - +chr1 10327 10340 RXRG_MA0856.1 4.702443340496897 - +chr1 10387 10400 RXRG_MA0856.1 5.709852543576257 - +chr1 10394 10407 RXRG_MA0856.1 4.702443340496897 - +chr1 10437 10450 RXRG_MA0856.1 4.702443340496897 - +chr1 1407335 1407348 RXRG_MA0856.1 1.331205861726634 + +chr1 1407706 1407719 RXRG_MA0856.1 3.936796283164389 - +chr1 1724364 1724377 RXRG_MA0856.1 1.986692757043804 - +chr1 2556006 2556019 RXRG_MA0856.1 1.570532201690778 - +chr1 2578279 2578292 RXRG_MA0856.1 2.072142513251205 + +chr1 3666648 3666661 RXRG_MA0856.1 11.748157548495811 - +chr1 3676938 3676951 RXRG_MA0856.1 2.989890380553296 - +chr1 5993055 5993068 RXRG_MA0856.1 4.447839269428377 - +chr1 6235406 6235419 RXRG_MA0856.1 1.210386981463114 - +chr1 6393407 6393420 RXRG_MA0856.1 1.338248384437650 + +chr1 6624923 6624936 RXRG_MA0856.1 1.370395412791775 + +chr1 6701806 6701819 RXRG_MA0856.1 7.845655147112370 - +chr1 6861409 6861422 RXRG_MA0856.1 1.333574556051731 - +chr1 6861641 6861654 RXRG_MA0856.1 0.311591060510589 - +chr1 9163770 9163783 RXRG_MA0856.1 1.135156720962262 + +chr1 9413254 9413267 RXRG_MA0856.1 0.846468963154922 - +chr1 9942748 9942761 RXRG_MA0856.1 6.988235616997402 + +chr1 10986206 10986219 RXRG_MA0856.1 0.329127245193386 + +chr1 11980356 11980369 RXRG_MA0856.1 1.186713766391154 + +chr1 12040521 12040534 RXRG_MA0856.1 1.367543512374029 + +chr1 15526734 15526747 RXRG_MA0856.1 2.298391998752114 + +chr1 15617714 15617727 RXRG_MA0856.1 4.037182357951864 - +chr1 15834791 15834804 RXRG_MA0856.1 0.673433251524621 + +chr1 15975657 15975670 RXRG_MA0856.1 6.367592922821158 + 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29182185 29182198 RXRG_MA0856.1 4.543305955860899 - +chr1 30718478 30718491 RXRG_MA0856.1 0.557577930197992 - +chr1 31065685 31065698 RXRG_MA0856.1 0.767006348361086 - +chr1 31549123 31549136 RXRG_MA0856.1 3.991084454139111 + +chr1 32222223 32222236 RXRG_MA0856.1 0.319036382620496 + +chr1 32394444 32394457 RXRG_MA0856.1 11.205980310404911 - +chr1 32981032 32981045 RXRG_MA0856.1 8.674707718688280 - +chr1 33181983 33181996 RXRG_MA0856.1 0.825030180630924 - +chr1 34360911 34360924 RXRG_MA0856.1 7.813253065884790 - +chr1 34859771 34859784 RXRG_MA0856.1 3.347049743132296 - +chr1 34860045 34860058 RXRG_MA0856.1 3.044789500203905 - +chr1 35079643 35079656 RXRG_MA0856.1 0.204626905014093 - +chr1 36386451 36386464 RXRG_MA0856.1 1.201508247689171 - +chr1 36464278 36464291 RXRG_MA0856.1 11.528407469708860 - +chr1 38012912 38012925 RXRG_MA0856.1 0.123212060994057 - +chr1 38475063 38475076 RXRG_MA0856.1 0.230439406197505 - +chr1 40161604 40161617 RXRG_MA0856.1 1.479015267521431 - +chr1 40532267 40532280 RXRG_MA0856.1 0.238293691081062 + +chr1 41751236 41751249 RXRG_MA0856.1 4.416839698584145 + +chr1 42658197 42658210 RXRG_MA0856.1 7.574307692588839 - +chr1 42924516 42924529 RXRG_MA0856.1 3.017041212520068 - +chr1 42931390 42931403 RXRG_MA0856.1 3.353319965994765 + +chr1 43389907 43389920 RXRG_MA0856.1 10.809475472320692 + +chr1 43991823 43991836 RXRG_MA0856.1 1.724624833254723 - +chr1 44213677 44213690 RXRG_MA0856.1 0.683570935454063 - +chr1 44213713 44213726 RXRG_MA0856.1 14.379591708885918 - +chr1 44355265 44355278 RXRG_MA0856.1 3.838530584056593 - +chr1 44631924 44631937 RXRG_MA0856.1 11.453677351181323 - +chr1 45011873 45011886 RXRG_MA0856.1 2.907825838416829 - +chr1 45583953 45583966 RXRG_MA0856.1 0.968703091502634 - +chr1 45686781 45686794 RXRG_MA0856.1 4.481932070109286 - +chr1 46198490 46198503 RXRG_MA0856.1 1.451691055859671 + +chr1 46442439 46442452 RXRG_MA0856.1 1.537338395839557 - +chr1 47334780 47334793 RXRG_MA0856.1 4.166476116152393 - +chr1 47436880 47436893 RXRG_MA0856.1 8.845045059906372 + +chr1 48498336 48498349 RXRG_MA0856.1 3.379919531633357 - +chr1 51491436 51491449 RXRG_MA0856.1 0.727310231080721 + +chr1 52637296 52637309 RXRG_MA0856.1 2.533023722380858 - +chr1 52843388 52843401 RXRG_MA0856.1 0.423157911345628 - +chr1 53238711 53238724 RXRG_MA0856.1 3.533650207239027 + +chr1 54801189 54801202 RXRG_MA0856.1 0.706956309971176 - +chr1 56821047 56821060 RXRG_MA0856.1 0.570058968644753 + +chr1 58573890 58573903 RXRG_MA0856.1 3.198128077556992 + +chr1 58815868 58815881 RXRG_MA0856.1 2.777848737270443 + +chr1 59008308 59008321 RXRG_MA0856.1 0.763306990530677 - +chr1 59296619 59296632 RXRG_MA0856.1 1.909953023739548 + +chr1 59697082 59697095 RXRG_MA0856.1 1.776592219547479 + +chr1 60978757 60978770 RXRG_MA0856.1 0.393667370577288 + +chr1 62160041 62160054 RXRG_MA0856.1 4.960399844582623 - +chr1 62687645 62687658 RXRG_MA0856.1 3.449391780185770 - +chr1 62800881 62800894 RXRG_MA0856.1 5.774146925986909 + +chr1 63594071 63594084 RXRG_MA0856.1 1.934184502864230 - +chr1 64960816 64960829 RXRG_MA0856.1 4.890279957379347 - +chr1 65068211 65068224 RXRG_MA0856.1 2.537802942209087 + +chr1 65148074 65148087 RXRG_MA0856.1 11.439879467076004 - +chr1 65812203 65812216 RXRG_MA0856.1 2.752671274378943 - +chr1 66984620 66984633 RXRG_MA0856.1 4.475414823968787 + +chr1 67053484 67053497 RXRG_MA0856.1 0.168097950526795 + +chr1 67430653 67430666 RXRG_MA0856.1 3.238127872465123 - +chr1 67760361 67760374 RXRG_MA0856.1 0.373120226000100 + +chr1 70410854 70410867 RXRG_MA0856.1 0.783410910770132 + +chr1 73573432 73573445 RXRG_MA0856.1 3.706741309832917 + +chr1 74714588 74714601 RXRG_MA0856.1 0.869906738630061 - +chr1 74812611 74812624 RXRG_MA0856.1 1.718097925665984 - +chr1 75724323 75724336 RXRG_MA0856.1 0.701960056997774 - +chr1 75727025 75727038 RXRG_MA0856.1 0.776397891938787 - +chr1 75785492 75785505 RXRG_MA0856.1 7.682074593598076 + +chr1 76154886 76154899 RXRG_MA0856.1 0.198750383666110 + +chr1 77219644 77219657 RXRG_MA0856.1 0.136073328791965 + +chr1 77414321 77414334 RXRG_MA0856.1 2.674253903465053 + +chr1 78004287 78004300 RXRG_MA0856.1 2.373717399005883 - +chr1 78004587 78004600 RXRG_MA0856.1 0.098690193519225 - +chr1 78377571 78377584 RXRG_MA0856.1 1.661701991994341 + +chr1 79260011 79260024 RXRG_MA0856.1 7.865200819289753 - +chr1 79461192 79461205 RXRG_MA0856.1 0.716167405944540 + +chr1 79468504 79468517 RXRG_MA0856.1 3.821964043562819 + +chr1 79695239 79695252 RXRG_MA0856.1 0.331918436777993 + +chr1 80639629 80639642 RXRG_MA0856.1 3.203319261544761 - +chr1 81437958 81437971 RXRG_MA0856.1 0.625355705358017 - +chr1 81549091 81549104 RXRG_MA0856.1 2.850697096293933 - +chr1 81598164 81598177 RXRG_MA0856.1 1.742095741721017 + +chr1 82152784 82152797 RXRG_MA0856.1 4.086934443686626 - +chr1 82152838 82152851 RXRG_MA0856.1 3.210885071342092 - +chr1 83406112 83406125 RXRG_MA0856.1 1.878332667602124 + +chr1 83501146 83501159 RXRG_MA0856.1 2.410677692191774 - +chr1 83508543 83508556 RXRG_MA0856.1 3.007450303635547 - +chr1 84988952 84988965 RXRG_MA0856.1 0.660584814449874 - +chr1 84995975 84995988 RXRG_MA0856.1 4.416409144625265 - +chr1 85201622 85201635 RXRG_MA0856.1 0.342671638466462 + +chr1 86616926 86616939 RXRG_MA0856.1 1.422466715238881 + +chr1 86755674 86755687 RXRG_MA0856.1 1.807088915368074 + +chr1 86915362 86915375 RXRG_MA0856.1 0.964672950890690 + +chr1 86915369 86915382 RXRG_MA0856.1 1.158676100543562 + +chr1 87587962 87587975 RXRG_MA0856.1 3.635063540288192 - +chr1 88683716 88683729 RXRG_MA0856.1 0.171154466836989 + +chr1 88868434 88868447 RXRG_MA0856.1 8.371550995953237 - +chr1 90509485 90509498 RXRG_MA0856.1 4.549953185017619 + +chr1 91804742 91804755 RXRG_MA0856.1 1.797773259994961 - +chr1 92080442 92080455 RXRG_MA0856.1 3.580150908414155 - +chr1 92298524 92298537 RXRG_MA0856.1 0.385819824697939 + +chr1 92537167 92537180 RXRG_MA0856.1 3.472166200248234 - +chr1 92951282 92951295 RXRG_MA0856.1 4.542394796820831 - +chr1 92951289 92951302 RXRG_MA0856.1 4.542394796820831 - +chr1 93179614 93179627 RXRG_MA0856.1 0.257642085835869 - +chr1 93180123 93180136 RXRG_MA0856.1 3.989483420556370 + +chr1 93615714 93615727 RXRG_MA0856.1 7.202659807269281 + +chr1 93704357 93704370 RXRG_MA0856.1 2.850697096293933 + +chr1 93708199 93708212 RXRG_MA0856.1 7.313257975484737 - +chr1 93878989 93879002 RXRG_MA0856.1 0.588191367080463 - +chr1 95072940 95072953 RXRG_MA0856.1 4.288940533881752 + +chr1 96722475 96722488 RXRG_MA0856.1 0.794215207839343 + +chr1 97163701 97163714 RXRG_MA0856.1 0.171154466836989 - +chr1 97920505 97920518 RXRG_MA0856.1 1.578332681751966 + +chr1 97921222 97921235 RXRG_MA0856.1 1.640675826872282 - +chr1 98054494 98054507 RXRG_MA0856.1 2.623923081639472 + +chr1 98662132 98662145 RXRG_MA0856.1 6.016935932436475 - +chr1 98871590 98871603 RXRG_MA0856.1 1.327478342599831 + +chr1 99759091 99759104 RXRG_MA0856.1 0.947826314471989 - +chr1 100250036 100250049 RXRG_MA0856.1 1.094210246421742 + +chr1 101025938 101025951 RXRG_MA0856.1 0.598624744434459 + +chr1 101388755 101388768 RXRG_MA0856.1 1.560534989399705 + +chr1 101407754 101407767 RXRG_MA0856.1 3.214428726529501 + +chr1 103525294 103525307 RXRG_MA0856.1 2.609788049343233 - +chr1 107016242 107016255 RXRG_MA0856.1 1.488650912872541 + +chr1 107499860 107499873 RXRG_MA0856.1 0.736557418212523 + +chr1 107963851 107963864 RXRG_MA0856.1 0.456140407521093 - +chr1 108692758 108692771 RXRG_MA0856.1 3.917951892345011 - +chr1 109041671 109041684 RXRG_MA0856.1 0.479941472171198 - +chr1 109075849 109075862 RXRG_MA0856.1 0.317206661612408 - +chr1 109100363 109100376 RXRG_MA0856.1 0.574311075873141 - +chr1 109425990 109426003 RXRG_MA0856.1 6.349142737314699 - +chr1 109426728 109426741 RXRG_MA0856.1 0.695334611124543 - +chr1 110407967 110407980 RXRG_MA0856.1 6.200840194488497 - +chr1 110619698 110619711 RXRG_MA0856.1 4.386774801659435 + +chr1 110787718 110787731 RXRG_MA0856.1 3.212111808276092 - +chr1 111508105 111508118 RXRG_MA0856.1 5.654686277614148 + +chr1 112619393 112619406 RXRG_MA0856.1 3.719743543740720 - +chr1 112674779 112674792 RXRG_MA0856.1 4.797431713135947 + +chr1 112674786 112674799 RXRG_MA0856.1 3.003443348123118 + +chr1 113390642 113390655 RXRG_MA0856.1 0.412602585056153 - +chr1 113929037 113929050 RXRG_MA0856.1 0.354061687471253 + +chr1 116504721 116504734 RXRG_MA0856.1 2.989599529130428 - +chr1 116737884 116737897 RXRG_MA0856.1 4.827489601629493 - +chr1 117059534 117059547 RXRG_MA0856.1 4.104937453862908 - +chr1 117654574 117654587 RXRG_MA0856.1 2.169057317428413 - +chr1 119266613 119266626 RXRG_MA0856.1 7.846169481689214 - +chr1 119266661 119266674 RXRG_MA0856.1 0.867386427317011 + +chr1 119323841 119323854 RXRG_MA0856.1 2.194160354931634 + +chr1 120850556 120850569 RXRG_MA0856.1 6.615575152214880 - +chr1 144412990 144413003 RXRG_MA0856.1 6.615575152214882 + +chr1 145281530 145281543 RXRG_MA0856.1 6.615575152214882 + +chr1 145927491 145927504 RXRG_MA0856.1 4.535895393005064 + +chr1 145996887 145996900 RXRG_MA0856.1 0.280350988279268 - +chr1 146938467 146938480 RXRG_MA0856.1 0.499421621344821 + +chr1 147669819 147669832 RXRG_MA0856.1 4.974703775662890 - +chr1 148152164 148152177 RXRG_MA0856.1 0.499421621344820 - +chr1 148523015 148523028 RXRG_MA0856.1 6.615575152214882 + +chr1 150010076 150010089 RXRG_MA0856.1 1.248917498885506 - +chr1 150268560 150268573 RXRG_MA0856.1 0.885752915226177 - +chr1 150562384 150562397 RXRG_MA0856.1 0.557897212967952 - +chr1 150562607 150562620 RXRG_MA0856.1 6.747270835091260 - +chr1 151070793 151070806 RXRG_MA0856.1 0.653438734332184 + +chr1 151156341 151156354 RXRG_MA0856.1 0.379239400111788 - +chr1 151189793 151189806 RXRG_MA0856.1 1.393183502130912 - +chr1 151282204 151282217 RXRG_MA0856.1 1.340754755988514 + +chr1 151327234 151327247 RXRG_MA0856.1 5.938142555872645 + +chr1 152908478 152908491 RXRG_MA0856.1 2.795160151559012 - +chr1 153849622 153849635 RXRG_MA0856.1 0.659014807291262 - +chr1 154272694 154272707 RXRG_MA0856.1 6.463404944122908 + +chr1 154608407 154608420 RXRG_MA0856.1 2.888280166239447 - +chr1 154860149 154860162 RXRG_MA0856.1 3.768295779696208 + +chr1 154974391 154974404 RXRG_MA0856.1 7.373297338429697 - +chr1 154974398 154974411 RXRG_MA0856.1 0.559569641356049 - +chr1 155017465 155017478 RXRG_MA0856.1 1.539303228544707 + +chr1 155194088 155194101 RXRG_MA0856.1 0.228520634466264 + +chr1 155324199 155324212 RXRG_MA0856.1 0.223165649467456 + +chr1 156054574 156054587 RXRG_MA0856.1 1.055832797639244 + +chr1 156488787 156488800 RXRG_MA0856.1 2.717751953926131 + +chr1 156591945 156591958 RXRG_MA0856.1 0.210863287229867 + +chr1 156740833 156740846 RXRG_MA0856.1 4.338713648442826 + +chr1 157176769 157176782 RXRG_MA0856.1 0.172496939988944 - +chr1 158286034 158286047 RXRG_MA0856.1 2.236048677710635 + +chr1 158830361 158830374 RXRG_MA0856.1 0.375135765601143 - +chr1 159925037 159925050 RXRG_MA0856.1 1.089844059013033 + +chr1 160343127 160343140 RXRG_MA0856.1 6.808385931406781 - +chr1 160790109 160790122 RXRG_MA0856.1 0.900330374243827 + +chr1 160855785 160855798 RXRG_MA0856.1 2.439512627011644 + +chr1 161020961 161020974 RXRG_MA0856.1 6.897204785462500 - +chr1 161133074 161133087 RXRG_MA0856.1 1.803380803144330 + diff --git a/demo/known_tfbs_chr1_hg38/Rarb_MA0857.1.bed b/demo/known_tfbs_chr1_hg38/Rarb_MA0857.1.bed new file mode 100644 index 0000000..a5da2dc --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/Rarb_MA0857.1.bed @@ -0,0 +1,234 @@ +chr1 2300996 2301011 Rarb_MA0857.1 -3.243012598187988 - +chr1 2585569 2585584 Rarb_MA0857.1 -4.529841861729970 - +chr1 3491413 3491428 Rarb_MA0857.1 -4.859478227871818 - +chr1 3656774 3656789 Rarb_MA0857.1 -4.305549508538622 + +chr1 6205670 6205685 Rarb_MA0857.1 1.751200346089322 - +chr1 8817526 8817541 Rarb_MA0857.1 -4.498703131524013 + +chr1 8879363 8879378 Rarb_MA0857.1 -2.959863138490507 - +chr1 9950872 9950887 Rarb_MA0857.1 7.936888197233103 + +chr1 10475114 10475129 Rarb_MA0857.1 4.260126401703988 - +chr1 10965643 10965658 Rarb_MA0857.1 4.501908226109892 + 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Rarb_MA0857.1 -4.728663387086673 + +chr1 114670572 114670587 Rarb_MA0857.1 -3.067971625750141 + +chr1 115099152 115099167 Rarb_MA0857.1 -1.823801834445627 + +chr1 115730005 115730020 Rarb_MA0857.1 -3.930288875056229 - +chr1 116288494 116288509 Rarb_MA0857.1 -3.206561337783564 - +chr1 117001461 117001476 Rarb_MA0857.1 -4.351194835615493 + +chr1 119141027 119141042 Rarb_MA0857.1 -4.654747280748326 - +chr1 120850461 120850476 Rarb_MA0857.1 -1.901170688849790 + +chr1 120850985 120851000 Rarb_MA0857.1 -4.229820083902330 - +chr1 144412561 144412576 Rarb_MA0857.1 0.939628059514426 + +chr1 144413083 144413098 Rarb_MA0857.1 -1.901170688849793 - +chr1 144560829 144560844 Rarb_MA0857.1 -1.182195127899486 - +chr1 145281101 145281116 Rarb_MA0857.1 0.939628059514426 + +chr1 145281623 145281638 Rarb_MA0857.1 -1.901170688849793 - +chr1 145979120 145979135 Rarb_MA0857.1 -2.597931193808230 + +chr1 146387542 146387557 Rarb_MA0857.1 -3.971115164558186 + +chr1 147046891 147046906 Rarb_MA0857.1 -3.304438781024658 + +chr1 148523108 148523123 Rarb_MA0857.1 -1.901170688849793 - +chr1 149928233 149928248 Rarb_MA0857.1 -2.585771256400905 - +chr1 150515799 150515814 Rarb_MA0857.1 -3.705893913655231 + +chr1 150561083 150561098 Rarb_MA0857.1 -0.499059112416556 + +chr1 150629652 150629667 Rarb_MA0857.1 -4.303514420581345 + +chr1 151070826 151070841 Rarb_MA0857.1 0.840276472099708 + +chr1 151156341 151156356 Rarb_MA0857.1 -3.172453309318290 - +chr1 151475399 151475414 Rarb_MA0857.1 -4.846452607470068 - +chr1 153659021 153659036 Rarb_MA0857.1 -2.403096781601375 + +chr1 153671698 153671713 Rarb_MA0857.1 -3.460459353028289 - +chr1 153727904 153727919 Rarb_MA0857.1 -3.473302960755985 + +chr1 153849851 153849866 Rarb_MA0857.1 7.936888197233103 - +chr1 154272693 154272708 Rarb_MA0857.1 -0.576846605436161 + +chr1 154860350 154860365 Rarb_MA0857.1 -0.794170949331822 - +chr1 155194087 155194102 Rarb_MA0857.1 5.248664979319778 + +chr1 155194415 155194430 Rarb_MA0857.1 -4.234298656363364 + +chr1 155273622 155273637 Rarb_MA0857.1 -1.146274592884085 + +chr1 155273630 155273645 Rarb_MA0857.1 -4.164326953918565 + +chr1 155323281 155323296 Rarb_MA0857.1 -1.554187847115274 + +chr1 156054310 156054325 Rarb_MA0857.1 -2.211675803668317 - +chr1 156194002 156194017 Rarb_MA0857.1 -1.650790152302531 + +chr1 156489032 156489047 Rarb_MA0857.1 -2.639599452777431 + +chr1 157806873 157806888 Rarb_MA0857.1 -1.332538869180726 - +chr1 157833161 157833176 Rarb_MA0857.1 -2.643616137946017 - +chr1 158179751 158179766 Rarb_MA0857.1 -2.634053543466091 + +chr1 158179882 158179897 Rarb_MA0857.1 -3.265812824365442 + +chr1 159781071 159781086 Rarb_MA0857.1 -4.606377052310981 - +chr1 160031334 160031349 Rarb_MA0857.1 -4.589787761452516 + +chr1 160263182 160263197 Rarb_MA0857.1 -4.929399702359166 - +chr1 160797399 160797414 Rarb_MA0857.1 -3.940027880479295 - +chr1 160862841 160862856 Rarb_MA0857.1 -4.812874740813619 + +chr1 161133203 161133218 Rarb_MA0857.1 -0.760120388400773 - +chr1 161390066 161390081 Rarb_MA0857.1 -4.092162499759569 + +chr1 161440702 161440717 Rarb_MA0857.1 3.477987657415018 + +chr1 161707279 161707294 Rarb_MA0857.1 -3.163957030421181 - +chr1 161766397 161766412 Rarb_MA0857.1 -3.784495129073268 - +chr1 165878244 165878259 Rarb_MA0857.1 -0.336851746645486 - +chr1 166490226 166490241 Rarb_MA0857.1 2.010406350781325 - +chr1 167222145 167222160 Rarb_MA0857.1 -4.053623060366370 - +chr1 167500143 167500158 Rarb_MA0857.1 -4.950344708393867 - +chr1 167540439 167540454 Rarb_MA0857.1 -3.311266194268402 - +chr1 167716540 167716555 Rarb_MA0857.1 -4.717524720883773 - +chr1 168178744 168178759 Rarb_MA0857.1 -0.802584818169267 + +chr1 168467374 168467389 Rarb_MA0857.1 -4.302991726467086 - +chr1 168504312 168504327 Rarb_MA0857.1 0.254928163725791 - +chr1 169024920 169024935 Rarb_MA0857.1 -3.107365249566787 + +chr1 169025244 169025259 Rarb_MA0857.1 -1.658929961600294 - +chr1 169594663 169594678 Rarb_MA0857.1 -0.181080446304638 - +chr1 170214709 170214724 Rarb_MA0857.1 -3.188501033564204 + +chr1 170853603 170853618 Rarb_MA0857.1 2.709706258020025 + +chr1 171251668 171251683 Rarb_MA0857.1 -0.210486786760687 - +chr1 171252006 171252021 Rarb_MA0857.1 -3.617507332510738 - +chr1 171645380 171645395 Rarb_MA0857.1 -3.935807108646180 - +chr1 171742150 171742165 Rarb_MA0857.1 -4.845731727107304 - +chr1 171781145 171781160 Rarb_MA0857.1 -3.706020262731151 + diff --git a/demo/known_tfbs_chr1_hg38/Rarb_var.2__MA0858.1.bed b/demo/known_tfbs_chr1_hg38/Rarb_var.2__MA0858.1.bed new file mode 100644 index 0000000..a5e3910 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/Rarb_var.2__MA0858.1.bed @@ -0,0 +1,108 @@ +chr1 10169 10185 Rarb_var.2__MA0858.1 -2.345860358085165 - +chr1 10346 10362 Rarb_var.2__MA0858.1 -3.233163421783568 - +chr1 778690 778706 Rarb_var.2__MA0858.1 -2.314762269602490 + +chr1 1033060 1033076 Rarb_var.2__MA0858.1 -3.307840797972691 + +chr1 1511604 1511620 Rarb_var.2__MA0858.1 -1.164157684762369 + +chr1 2547922 2547938 Rarb_var.2__MA0858.1 -2.664178855857585 - +chr1 2577918 2577934 Rarb_var.2__MA0858.1 -0.367604750881287 + +chr1 2585836 2585852 Rarb_var.2__MA0858.1 -3.348045762697465 - +chr1 3625272 3625288 Rarb_var.2__MA0858.1 -1.393780558632604 + +chr1 6206049 6206065 Rarb_var.2__MA0858.1 -1.271011132574883 + +chr1 6613920 6613936 Rarb_var.2__MA0858.1 0.466953883469617 - +chr1 9163823 9163839 Rarb_var.2__MA0858.1 -3.211334422360856 - +chr1 9181465 9181481 Rarb_var.2__MA0858.1 -0.771363442787272 + +chr1 9910960 9910976 Rarb_var.2__MA0858.1 -0.947678391487687 - +chr1 12052068 12052084 Rarb_var.2__MA0858.1 9.599388885404950 - +chr1 12079179 12079195 Rarb_var.2__MA0858.1 0.574361973815198 - +chr1 15524937 15524953 Rarb_var.2__MA0858.1 -2.242235888084238 + +chr1 16644564 16644580 Rarb_var.2__MA0858.1 -0.375358879707971 - +chr1 20786970 20786986 Rarb_var.2__MA0858.1 3.049831974996454 + +chr1 21791763 21791779 Rarb_var.2__MA0858.1 1.212643286509925 + +chr1 23484651 23484667 Rarb_var.2__MA0858.1 -3.173432862929858 - +chr1 23959156 23959172 Rarb_var.2__MA0858.1 -3.322884767866292 - +chr1 25676046 25676062 Rarb_var.2__MA0858.1 2.090008815195540 - +chr1 25906088 25906104 Rarb_var.2__MA0858.1 -2.275231215523339 + +chr1 27626313 27626329 Rarb_var.2__MA0858.1 -3.562175738403846 - +chr1 28088604 28088620 Rarb_var.2__MA0858.1 -2.842349275070280 - +chr1 28648854 28648870 Rarb_var.2__MA0858.1 6.240974291464014 - +chr1 28736538 28736554 Rarb_var.2__MA0858.1 4.263097899983967 + +chr1 31549696 31549712 Rarb_var.2__MA0858.1 -2.568836849931786 - +chr1 32651375 32651391 Rarb_var.2__MA0858.1 -1.409805881543291 - +chr1 32992973 32992989 Rarb_var.2__MA0858.1 -2.969104282154423 + +chr1 33350319 33350335 Rarb_var.2__MA0858.1 -2.141856253115436 + +chr1 34530602 34530618 Rarb_var.2__MA0858.1 -1.596288014811069 - +chr1 35269159 35269175 Rarb_var.2__MA0858.1 -2.658341493333552 + +chr1 36306904 36306920 Rarb_var.2__MA0858.1 -3.389658523384360 + +chr1 36386083 36386099 Rarb_var.2__MA0858.1 -1.857249468649835 + +chr1 37807835 37807851 Rarb_var.2__MA0858.1 2.041845145262355 - +chr1 37926151 37926167 Rarb_var.2__MA0858.1 -0.386988878909906 - +chr1 39215380 39215396 Rarb_var.2__MA0858.1 -0.262539099095633 + +chr1 41752216 41752232 Rarb_var.2__MA0858.1 -0.746533170695976 - +chr1 42036020 42036036 Rarb_var.2__MA0858.1 3.667927893902689 + +chr1 42958030 42958046 Rarb_var.2__MA0858.1 -0.757580218278057 - +chr1 43974613 43974629 Rarb_var.2__MA0858.1 4.481898817053525 + +chr1 44674659 44674675 Rarb_var.2__MA0858.1 -3.454955717643601 + +chr1 45012212 45012228 Rarb_var.2__MA0858.1 -3.542525043671465 + +chr1 45304269 45304285 Rarb_var.2__MA0858.1 -2.607027798111468 + +chr1 45340132 45340148 Rarb_var.2__MA0858.1 -2.680055769795929 - +chr1 46247582 46247598 Rarb_var.2__MA0858.1 -1.759718447483467 + +chr1 46604001 46604017 Rarb_var.2__MA0858.1 -2.851206257040805 + +chr1 46616273 46616289 Rarb_var.2__MA0858.1 3.490384901992979 - +chr1 50349007 50349023 Rarb_var.2__MA0858.1 -0.654381935127098 - +chr1 50349147 50349163 Rarb_var.2__MA0858.1 -0.462394018594316 - +chr1 50960106 50960122 Rarb_var.2__MA0858.1 -1.120065430991815 + +chr1 51518803 51518819 Rarb_var.2__MA0858.1 2.491711890246663 + +chr1 52056523 52056539 Rarb_var.2__MA0858.1 -3.381527029686204 - +chr1 52365858 52365874 Rarb_var.2__MA0858.1 4.431306642226112 + +chr1 53238648 53238664 Rarb_var.2__MA0858.1 0.546213034223034 - +chr1 55205243 55205259 Rarb_var.2__MA0858.1 7.054160016986059 + +chr1 56135439 56135455 Rarb_var.2__MA0858.1 5.351118160152421 - +chr1 57167935 57167951 Rarb_var.2__MA0858.1 -2.568627106767678 + +chr1 58574078 58574094 Rarb_var.2__MA0858.1 -3.558708490398075 - +chr1 58699786 58699802 Rarb_var.2__MA0858.1 -1.192299161291315 - +chr1 59026456 59026472 Rarb_var.2__MA0858.1 2.097532494399998 - +chr1 59266898 59266914 Rarb_var.2__MA0858.1 -0.920603643761963 - +chr1 61724905 61724921 Rarb_var.2__MA0858.1 -2.749683489162313 - +chr1 61742832 61742848 Rarb_var.2__MA0858.1 -0.317827330585728 - +chr1 61783105 61783121 Rarb_var.2__MA0858.1 0.106478639463494 + +chr1 63367423 63367439 Rarb_var.2__MA0858.1 -2.215382308742959 - +chr1 63594363 63594379 Rarb_var.2__MA0858.1 2.600531696968000 - +chr1 64172377 64172393 Rarb_var.2__MA0858.1 -3.111050773340874 - +chr1 64172738 64172754 Rarb_var.2__MA0858.1 0.624518277996488 - +chr1 64172827 64172843 Rarb_var.2__MA0858.1 18.286250420957224 + +chr1 65812134 65812150 Rarb_var.2__MA0858.1 1.263565686998266 - +chr1 66350412 66350428 Rarb_var.2__MA0858.1 -0.424406142184563 - +chr1 66350414 66350430 Rarb_var.2__MA0858.1 -0.802616304163187 + +chr1 66396755 66396771 Rarb_var.2__MA0858.1 -2.520900336890524 - +chr1 66397422 66397438 Rarb_var.2__MA0858.1 0.880162764247010 + +chr1 66649205 66649221 Rarb_var.2__MA0858.1 -3.306974924734088 - +chr1 67172175 67172191 Rarb_var.2__MA0858.1 2.944035027390427 + +chr1 69382723 69382739 Rarb_var.2__MA0858.1 -2.334341794815660 + +chr1 70204969 70204985 Rarb_var.2__MA0858.1 -3.438606479560194 + +chr1 70354521 70354537 Rarb_var.2__MA0858.1 -0.939058668398934 - +chr1 70411552 70411568 Rarb_var.2__MA0858.1 -3.528590446306157 + +chr1 70685629 70685645 Rarb_var.2__MA0858.1 -3.614142059570193 - +chr1 73573306 73573322 Rarb_var.2__MA0858.1 -2.467942342847262 - +chr1 74714298 74714314 Rarb_var.2__MA0858.1 -2.551881683873427 + +chr1 74812315 74812331 Rarb_var.2__MA0858.1 -1.166718158130040 - +chr1 74812354 74812370 Rarb_var.2__MA0858.1 -3.590811180476809 - +chr1 75785337 75785353 Rarb_var.2__MA0858.1 0.788451825026299 - +chr1 75786151 75786167 Rarb_var.2__MA0858.1 -0.863029208114638 + +chr1 75981543 75981559 Rarb_var.2__MA0858.1 2.514404309011295 - +chr1 75985987 75986003 Rarb_var.2__MA0858.1 2.198173512891591 - +chr1 77683247 77683263 Rarb_var.2__MA0858.1 -3.203888511514315 - +chr1 77770594 77770610 Rarb_var.2__MA0858.1 2.859923693429047 - +chr1 77979776 77979792 Rarb_var.2__MA0858.1 -3.000001944207439 - +chr1 79260361 79260377 Rarb_var.2__MA0858.1 4.140616858568325 - +chr1 81597969 81597985 Rarb_var.2__MA0858.1 -1.471680148213212 + +chr1 81599006 81599022 Rarb_var.2__MA0858.1 -1.073393386753906 + +chr1 82152560 82152576 Rarb_var.2__MA0858.1 2.326072161300823 - +chr1 83485853 83485869 Rarb_var.2__MA0858.1 7.248484076296466 + +chr1 84506523 84506539 Rarb_var.2__MA0858.1 -0.658323410179732 + +chr1 84620650 84620666 Rarb_var.2__MA0858.1 -0.923233103229505 + +chr1 85201378 85201394 Rarb_var.2__MA0858.1 -2.667393660222789 + +chr1 88683754 88683770 Rarb_var.2__MA0858.1 0.984622698909191 + +chr1 92961070 92961086 Rarb_var.2__MA0858.1 4.061260165324555 + +chr1 93615531 93615547 Rarb_var.2__MA0858.1 4.034316340719220 + +chr1 93693130 93693146 Rarb_var.2__MA0858.1 -3.141057698617764 - +chr1 93693381 93693397 Rarb_var.2__MA0858.1 -0.706348606682941 - diff --git a/demo/known_tfbs_chr1_hg38/Rarg_MA0859.1.bed b/demo/known_tfbs_chr1_hg38/Rarg_MA0859.1.bed new file mode 100644 index 0000000..d43d6c0 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/Rarg_MA0859.1.bed @@ -0,0 +1,235 @@ +chr1 2413095 2413110 Rarg_MA0859.1 -0.606585160500515 + +chr1 2585986 2586001 Rarg_MA0859.1 -2.503182310104951 + +chr1 3665917 3665932 Rarg_MA0859.1 -0.132479657147228 + +chr1 3676936 3676951 Rarg_MA0859.1 -2.410468012959067 - +chr1 6026568 6026583 Rarg_MA0859.1 -2.545631631206941 - +chr1 6205669 6205684 Rarg_MA0859.1 6.505365663004371 - +chr1 9942747 9942762 Rarg_MA0859.1 -0.764976200080128 + +chr1 9950873 9950888 Rarg_MA0859.1 11.219804579498392 + +chr1 10430831 10430846 Rarg_MA0859.1 -1.114990564415925 - +chr1 10475113 10475128 Rarg_MA0859.1 4.749147218340800 - +chr1 10940300 10940315 Rarg_MA0859.1 -2.578727875914061 + +chr1 10965644 10965659 Rarg_MA0859.1 6.808874925911290 + +chr1 11262747 11262762 Rarg_MA0859.1 -1.231534031472513 + +chr1 11909264 11909279 Rarg_MA0859.1 6.505365663004371 + +chr1 11909638 11909653 Rarg_MA0859.1 -1.748626004517783 - +chr1 12040184 12040199 Rarg_MA0859.1 6.505365663004371 + +chr1 12052278 12052293 Rarg_MA0859.1 -0.424520062528196 - +chr1 14599434 14599449 Rarg_MA0859.1 4.865645894473323 + +chr1 15617713 15617728 Rarg_MA0859.1 -1.410372805819620 - +chr1 16905179 16905194 Rarg_MA0859.1 -1.158877370274749 + +chr1 17536264 17536279 Rarg_MA0859.1 -2.705026649226413 + +chr1 19210567 19210582 Rarg_MA0859.1 -0.681218217624278 + +chr1 21762650 21762665 Rarg_MA0859.1 -1.364191917407919 + +chr1 23540001 23540016 Rarg_MA0859.1 -1.305105021252134 - +chr1 23800874 23800889 Rarg_MA0859.1 -2.090274478810307 + +chr1 25337973 25337988 Rarg_MA0859.1 -1.786722286506368 - +chr1 25998090 25998105 Rarg_MA0859.1 0.126855313814072 - +chr1 26621373 26621388 Rarg_MA0859.1 1.656192857903988 - +chr1 26864845 26864860 Rarg_MA0859.1 -1.977159964240131 + +chr1 27626171 27626186 Rarg_MA0859.1 4.823573381426884 + +chr1 27626304 27626319 Rarg_MA0859.1 0.637484727361531 - +chr1 27626552 27626567 Rarg_MA0859.1 -1.314738862303575 - +chr1 28518973 28518988 Rarg_MA0859.1 -0.239022616012443 - +chr1 28669527 28669542 Rarg_MA0859.1 -2.581168494038578 + +chr1 28669921 28669936 Rarg_MA0859.1 3.122940441279364 - +chr1 29182176 29182191 Rarg_MA0859.1 -2.327041606828844 - +chr1 29182257 29182272 Rarg_MA0859.1 -0.911003519732846 - +chr1 31788783 31788798 Rarg_MA0859.1 2.311636175371105 + +chr1 31938507 31938522 Rarg_MA0859.1 0.299694667430605 - +chr1 33036980 33036995 Rarg_MA0859.1 -0.987656330307604 - +chr1 33181982 33181997 Rarg_MA0859.1 -2.805565989228956 - +chr1 36463946 36463961 Rarg_MA0859.1 -1.763699757168256 - +chr1 39576009 39576024 Rarg_MA0859.1 -2.552486384712918 + +chr1 39598575 39598590 Rarg_MA0859.1 6.505365663004371 - +chr1 39996004 39996019 Rarg_MA0859.1 4.321683793904462 + +chr1 40097616 40097631 Rarg_MA0859.1 -2.609776651349238 + +chr1 40373797 40373812 Rarg_MA0859.1 -0.167671719789695 + +chr1 40980385 40980400 Rarg_MA0859.1 -1.525001313814364 - +chr1 41487336 41487351 Rarg_MA0859.1 -2.584539161774230 - +chr1 41751235 41751250 Rarg_MA0859.1 -2.735272154439955 + +chr1 41751278 41751293 Rarg_MA0859.1 -2.261369371590675 - +chr1 41751286 41751301 Rarg_MA0859.1 0.932330825207060 - +chr1 41751604 41751619 Rarg_MA0859.1 -2.826170817806912 - +chr1 41752020 41752035 Rarg_MA0859.1 3.074622548445785 + +chr1 43389914 43389929 Rarg_MA0859.1 4.328715277218036 + +chr1 43853907 43853922 Rarg_MA0859.1 -2.458774455647398 - +chr1 44631923 44631938 Rarg_MA0859.1 0.072601567120738 - +chr1 44674281 44674296 Rarg_MA0859.1 9.840566258385790 + +chr1 44730572 44730587 Rarg_MA0859.1 0.839366560180562 + +chr1 45052906 45052921 Rarg_MA0859.1 4.832177871565380 + +chr1 45499957 45499972 Rarg_MA0859.1 -0.179505543746782 + +chr1 45583951 45583966 Rarg_MA0859.1 1.579677541857757 - +chr1 46616832 46616847 Rarg_MA0859.1 -2.101731307442522 - +chr1 47334778 47334793 Rarg_MA0859.1 3.542348499077844 - +chr1 48730573 48730588 Rarg_MA0859.1 -2.054726658572256 + +chr1 52843442 52843457 Rarg_MA0859.1 6.103711130237708 - +chr1 53838430 53838445 Rarg_MA0859.1 -2.151905226366554 + +chr1 53838634 53838649 Rarg_MA0859.1 -0.924822445888551 + +chr1 54887569 54887584 Rarg_MA0859.1 -1.086418588320701 - +chr1 58573510 58573525 Rarg_MA0859.1 -0.853554635211794 - +chr1 58573637 58573652 Rarg_MA0859.1 -0.287822303263598 + +chr1 58968718 58968733 Rarg_MA0859.1 -2.309128996915206 + +chr1 59296619 59296634 Rarg_MA0859.1 6.232043254962192 + +chr1 61318982 61318997 Rarg_MA0859.1 -2.425198423855571 - +chr1 61725182 61725197 Rarg_MA0859.1 -1.925104032289404 + +chr1 62122609 62122624 Rarg_MA0859.1 -0.213868004524715 + +chr1 63125125 63125140 Rarg_MA0859.1 5.116326501678600 - +chr1 63523009 63523024 Rarg_MA0859.1 0.333679503562914 + +chr1 63594354 63594369 Rarg_MA0859.1 0.058953620666114 - +chr1 65812202 65812217 Rarg_MA0859.1 1.567996058247721 - +chr1 65895334 65895349 Rarg_MA0859.1 11.219804579498392 + +chr1 66342828 66342843 Rarg_MA0859.1 5.557184101772972 + +chr1 66343006 66343021 Rarg_MA0859.1 0.191646207404357 - +chr1 66350403 66350418 Rarg_MA0859.1 -0.654505096497504 - +chr1 66375004 66375019 Rarg_MA0859.1 -2.097753541318470 + +chr1 66397107 66397122 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111738710 111738725 Rarg_MA0859.1 1.191439617186840 - +chr1 112716226 112716241 Rarg_MA0859.1 6.545345060949229 + +chr1 113811887 113811902 Rarg_MA0859.1 -1.485156738600445 + +chr1 113858723 113858738 Rarg_MA0859.1 -1.583455987315288 - +chr1 113929553 113929568 Rarg_MA0859.1 -2.731783835395309 + +chr1 115099153 115099168 Rarg_MA0859.1 1.853569763258320 + +chr1 116288493 116288508 Rarg_MA0859.1 -0.558108279714345 - +chr1 120850984 120850999 Rarg_MA0859.1 -1.890738098704007 - +chr1 144412562 144412577 Rarg_MA0859.1 2.827079442888403 + +chr1 144546578 144546593 Rarg_MA0859.1 -1.130432934669883 - +chr1 144560828 144560843 Rarg_MA0859.1 0.163897276031940 - +chr1 145281102 145281117 Rarg_MA0859.1 2.827079442888403 + +chr1 145979121 145979136 Rarg_MA0859.1 -1.380307201925331 + +chr1 145979155 145979170 Rarg_MA0859.1 -2.833914569291124 + +chr1 146387392 146387407 Rarg_MA0859.1 -1.130432934669883 + +chr1 148522587 148522602 Rarg_MA0859.1 7.986127959031157 + +chr1 149927794 149927809 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Rarg_MA0859.1 0.075406307447910 + +chr1 167221994 167222009 Rarg_MA0859.1 -2.825565106363872 - +chr1 167222144 167222159 Rarg_MA0859.1 -2.336268825350977 - +chr1 167540438 167540453 Rarg_MA0859.1 -1.511159420307026 - +chr1 167714766 167714781 Rarg_MA0859.1 -1.179671649539067 + +chr1 167715503 167715518 Rarg_MA0859.1 -1.179671649539069 - +chr1 167716539 167716554 Rarg_MA0859.1 1.340996212831977 - +chr1 168178745 168178760 Rarg_MA0859.1 3.518313027599364 + +chr1 168467373 168467388 Rarg_MA0859.1 -2.223869590405606 - +chr1 169024921 169024936 Rarg_MA0859.1 -2.788907747509610 + +chr1 169161872 169161887 Rarg_MA0859.1 0.379336899502631 + +chr1 169309624 169309639 Rarg_MA0859.1 -2.044757910353866 - +chr1 169309644 169309659 Rarg_MA0859.1 -1.806045154032402 + +chr1 169594662 169594677 Rarg_MA0859.1 -1.542103476375494 - +chr1 170067412 170067427 Rarg_MA0859.1 -2.619259738492861 + +chr1 170853604 170853619 Rarg_MA0859.1 6.173758703408296 + +chr1 171251667 171251682 Rarg_MA0859.1 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a/demo/known_tfbs_chr1_hg38/Rarg_var.2__MA0860.1.bed b/demo/known_tfbs_chr1_hg38/Rarg_var.2__MA0860.1.bed new file mode 100644 index 0000000..723d890 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/Rarg_var.2__MA0860.1.bed @@ -0,0 +1,213 @@ +chr1 827480 827496 Rarg_var.2__MA0860.1 -3.811907494987392 - +chr1 1399691 1399707 Rarg_var.2__MA0860.1 0.947368236310978 + +chr1 1512293 1512309 Rarg_var.2__MA0860.1 -1.958312070173669 + +chr1 2585920 2585936 Rarg_var.2__MA0860.1 2.909253225870580 - +chr1 2586887 2586903 Rarg_var.2__MA0860.1 -3.736307596589905 - +chr1 6026380 6026396 Rarg_var.2__MA0860.1 -1.677099469290580 - +chr1 6393823 6393839 Rarg_var.2__MA0860.1 -5.485128658010159 + +chr1 7771072 7771088 Rarg_var.2__MA0860.1 -4.728140150713956 - +chr1 7771120 7771136 Rarg_var.2__MA0860.1 -3.570252291502296 - +chr1 7784028 7784044 Rarg_var.2__MA0860.1 -5.269274150520529 + +chr1 8878287 8878303 Rarg_var.2__MA0860.1 -4.120714833090899 - +chr1 9181454 9181470 Rarg_var.2__MA0860.1 -5.162421245566435 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35769394 Rarg_var.2__MA0860.1 1.360601694489049 - +chr1 35883133 35883149 Rarg_var.2__MA0860.1 -3.065469078341357 - +chr1 37514241 37514257 Rarg_var.2__MA0860.1 -4.161117187200999 + +chr1 37859893 37859909 Rarg_var.2__MA0860.1 -4.463829720157795 - +chr1 38559526 38559542 Rarg_var.2__MA0860.1 -4.162124153672796 + +chr1 39955807 39955823 Rarg_var.2__MA0860.1 -0.126704899129061 + +chr1 40039803 40039819 Rarg_var.2__MA0860.1 -1.034945123834496 - +chr1 40040102 40040118 Rarg_var.2__MA0860.1 0.223816166300290 - +chr1 40531544 40531560 Rarg_var.2__MA0860.1 -3.984376969337889 - +chr1 41728785 41728801 Rarg_var.2__MA0860.1 -1.868310795062867 - +chr1 41751529 41751545 Rarg_var.2__MA0860.1 -1.156107687591375 + +chr1 42036019 42036035 Rarg_var.2__MA0860.1 -0.702352616740418 + +chr1 42335319 42335335 Rarg_var.2__MA0860.1 -3.986394447600619 + +chr1 42456276 42456292 Rarg_var.2__MA0860.1 -2.252996782945313 + +chr1 44684588 44684604 Rarg_var.2__MA0860.1 -5.274406957133389 - +chr1 45521613 45521629 Rarg_var.2__MA0860.1 -1.181975509216407 + +chr1 45550596 45550612 Rarg_var.2__MA0860.1 -4.441537527784076 + +chr1 45550600 45550616 Rarg_var.2__MA0860.1 -2.246405833739821 - +chr1 46198188 46198204 Rarg_var.2__MA0860.1 -1.876078495618349 - +chr1 46247536 46247552 Rarg_var.2__MA0860.1 -5.608435505484511 - +chr1 47436990 47437006 Rarg_var.2__MA0860.1 -3.678582211286099 + +chr1 48794183 48794199 Rarg_var.2__MA0860.1 -3.263568848523552 - +chr1 50873561 50873577 Rarg_var.2__MA0860.1 -3.923866633422642 - +chr1 50977754 50977770 Rarg_var.2__MA0860.1 0.942420904483266 - +chr1 51285447 51285463 Rarg_var.2__MA0860.1 -0.488078032686302 + +chr1 52697954 52697970 Rarg_var.2__MA0860.1 -3.307404623972551 + +chr1 53220754 53220770 Rarg_var.2__MA0860.1 4.761831229192000 + +chr1 53220764 53220780 Rarg_var.2__MA0860.1 -3.924156039920071 + +chr1 54715703 54715719 Rarg_var.2__MA0860.1 -3.112565545889824 + +chr1 58392277 58392293 Rarg_var.2__MA0860.1 2.613366134779009 - +chr1 58815390 58815406 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Rarg_var.2__MA0860.1 6.637141610215998 - +chr1 73821721 73821737 Rarg_var.2__MA0860.1 -2.511842419613640 + +chr1 74198530 74198546 Rarg_var.2__MA0860.1 -3.036312471451327 - +chr1 75908926 75908942 Rarg_var.2__MA0860.1 -4.648856179783513 - +chr1 76425579 76425595 Rarg_var.2__MA0860.1 -5.652196938938820 - +chr1 77759371 77759387 Rarg_var.2__MA0860.1 -5.006722347358409 - +chr1 77779917 77779933 Rarg_var.2__MA0860.1 -1.124604250713288 - +chr1 78005249 78005265 Rarg_var.2__MA0860.1 -2.628166512720437 + +chr1 78143312 78143328 Rarg_var.2__MA0860.1 -1.582743148388249 - +chr1 78145273 78145289 Rarg_var.2__MA0860.1 -5.510485611656867 - +chr1 79472510 79472526 Rarg_var.2__MA0860.1 -2.821729650816956 + +chr1 79694496 79694512 Rarg_var.2__MA0860.1 2.923116450505166 + +chr1 81802171 81802187 Rarg_var.2__MA0860.1 -5.073517239429338 - +chr1 82152536 82152552 Rarg_var.2__MA0860.1 -2.622952279327318 + +chr1 83485863 83485879 Rarg_var.2__MA0860.1 -2.442318616020339 + +chr1 83500714 83500730 Rarg_var.2__MA0860.1 -2.141461445807037 - +chr1 83501025 83501041 Rarg_var.2__MA0860.1 -3.801735550181027 - +chr1 83508274 83508290 Rarg_var.2__MA0860.1 -4.043122433325416 + +chr1 84090719 84090735 Rarg_var.2__MA0860.1 4.621787949748554 - +chr1 85062108 85062124 Rarg_var.2__MA0860.1 -0.831015967017853 + +chr1 85201699 85201715 Rarg_var.2__MA0860.1 -0.860102766834783 - +chr1 86502600 86502616 Rarg_var.2__MA0860.1 5.990308256441748 + +chr1 86704073 86704089 Rarg_var.2__MA0860.1 -2.112653562206370 + +chr1 87058138 87058154 Rarg_var.2__MA0860.1 -1.891277422610671 + +chr1 89041407 89041423 Rarg_var.2__MA0860.1 -1.787700431499391 - +chr1 92080518 92080534 Rarg_var.2__MA0860.1 -4.736555779785028 + +chr1 92537217 92537233 Rarg_var.2__MA0860.1 -2.290647433602039 - +chr1 92538226 92538242 Rarg_var.2__MA0860.1 2.203300169379749 + +chr1 92961248 92961264 Rarg_var.2__MA0860.1 -4.916338000618961 + +chr1 93681249 93681265 Rarg_var.2__MA0860.1 -1.555014806204252 + +chr1 93909917 93909933 Rarg_var.2__MA0860.1 -4.341007172694475 - +chr1 94037514 94037530 Rarg_var.2__MA0860.1 -4.337584375424365 - +chr1 94926887 94926903 Rarg_var.2__MA0860.1 -4.922792205299539 + +chr1 97505949 97505965 Rarg_var.2__MA0860.1 -2.365169284381105 + +chr1 100076391 100076407 Rarg_var.2__MA0860.1 -2.240482885424541 - +chr1 100352991 100353007 Rarg_var.2__MA0860.1 6.601648991368748 + +chr1 100895908 100895924 Rarg_var.2__MA0860.1 -5.498198242217503 + +chr1 101052143 101052159 Rarg_var.2__MA0860.1 5.534682309698808 - +chr1 101136906 101136922 Rarg_var.2__MA0860.1 2.337991405346450 + +chr1 101236824 101236840 Rarg_var.2__MA0860.1 -2.883601136859388 + +chr1 101407754 101407770 Rarg_var.2__MA0860.1 -4.812543998239256 + +chr1 101567803 101567819 Rarg_var.2__MA0860.1 -5.668301561316833 + +chr1 106996111 106996127 Rarg_var.2__MA0860.1 -5.102632294537320 - +chr1 107431010 107431026 Rarg_var.2__MA0860.1 0.877621472189978 - +chr1 107451313 107451329 Rarg_var.2__MA0860.1 -3.227986417567809 + +chr1 107499328 107499344 Rarg_var.2__MA0860.1 -1.339158930271024 - +chr1 107935751 107935767 Rarg_var.2__MA0860.1 -2.114496413975365 + +chr1 109090988 109091004 Rarg_var.2__MA0860.1 -5.679649160180435 - +chr1 109532940 109532956 Rarg_var.2__MA0860.1 -4.216783498110118 + +chr1 110339516 110339532 Rarg_var.2__MA0860.1 -4.316160071240582 - +chr1 110631365 110631381 Rarg_var.2__MA0860.1 0.384151418269399 - +chr1 111139778 111139794 Rarg_var.2__MA0860.1 -2.590583278807452 - +chr1 111600672 111600688 Rarg_var.2__MA0860.1 -1.596459313603910 + +chr1 112707451 112707467 Rarg_var.2__MA0860.1 -1.771465436223464 + +chr1 113390784 113390800 Rarg_var.2__MA0860.1 -1.153108475444524 - +chr1 113858997 113859013 Rarg_var.2__MA0860.1 -2.798407139098004 - +chr1 113929950 113929966 Rarg_var.2__MA0860.1 -2.301523776275418 + +chr1 114108985 114109001 Rarg_var.2__MA0860.1 -4.088617831884833 + +chr1 114511088 114511104 Rarg_var.2__MA0860.1 -2.955248938214328 - +chr1 114670447 114670463 Rarg_var.2__MA0860.1 -1.563729075219245 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Rarg_var.2__MA0860.1 1.221295636246380 - +chr1 157403443 157403459 Rarg_var.2__MA0860.1 -5.630664540801794 + +chr1 158163163 158163179 Rarg_var.2__MA0860.1 -2.485500256451663 - +chr1 158179752 158179768 Rarg_var.2__MA0860.1 3.691276120048872 + +chr1 159122088 159122104 Rarg_var.2__MA0860.1 -2.922129655133355 + +chr1 159239767 159239783 Rarg_var.2__MA0860.1 2.029500285131946 - +chr1 159924879 159924895 Rarg_var.2__MA0860.1 3.208806130297116 + +chr1 159925101 159925117 Rarg_var.2__MA0860.1 3.300403883481328 + +chr1 159925240 159925256 Rarg_var.2__MA0860.1 9.372568560033164 - +chr1 159925578 159925594 Rarg_var.2__MA0860.1 1.371622589352253 + +chr1 160263182 160263198 Rarg_var.2__MA0860.1 -5.575912162475556 - +chr1 161159638 161159654 Rarg_var.2__MA0860.1 -0.466338748482963 - +chr1 161166156 161166172 Rarg_var.2__MA0860.1 -5.015385972406314 - +chr1 161440685 161440701 Rarg_var.2__MA0860.1 -5.212623628796707 + +chr1 161524463 161524479 Rarg_var.2__MA0860.1 -0.834412662074621 + +chr1 161530671 161530687 Rarg_var.2__MA0860.1 -4.575620143607887 + +chr1 161612276 161612292 Rarg_var.2__MA0860.1 -4.575620143607887 + +chr1 161707377 161707393 Rarg_var.2__MA0860.1 -2.855104550962577 - +chr1 165144883 165144899 Rarg_var.2__MA0860.1 -3.134561888378826 + +chr1 165828306 165828322 Rarg_var.2__MA0860.1 -0.895793368897498 - +chr1 166490224 166490240 Rarg_var.2__MA0860.1 5.349145435349148 - +chr1 167221986 167222002 Rarg_var.2__MA0860.1 -1.849862820299869 - +chr1 167222071 167222087 Rarg_var.2__MA0860.1 -5.179227211448627 - +chr1 167714612 167714628 Rarg_var.2__MA0860.1 -5.547592997712967 + +chr1 168504219 168504235 Rarg_var.2__MA0860.1 -3.776308821815920 + +chr1 168510144 168510160 Rarg_var.2__MA0860.1 5.418729836012481 - +chr1 169105867 169105883 Rarg_var.2__MA0860.1 -0.546052288859438 - +chr1 169161672 169161688 Rarg_var.2__MA0860.1 -2.325428885361559 + +chr1 169485846 169485862 Rarg_var.2__MA0860.1 -5.067603015833146 - +chr1 169680886 169680902 Rarg_var.2__MA0860.1 3.967773600654484 - +chr1 170074991 170075007 Rarg_var.2__MA0860.1 -1.833341316337989 - +chr1 171741563 171741579 Rarg_var.2__MA0860.1 -4.179206053560764 - +chr1 172181307 172181323 Rarg_var.2__MA0860.1 -5.301100337520711 - +chr1 172746299 172746315 Rarg_var.2__MA0860.1 -5.516275641757773 - +chr1 172819134 172819150 Rarg_var.2__MA0860.1 0.597161289270207 + +chr1 173195665 173195681 Rarg_var.2__MA0860.1 -1.810559045808638 - +chr1 173715404 173715420 Rarg_var.2__MA0860.1 -3.709135139073779 - diff --git a/demo/known_tfbs_chr1_hg38/Rfx1_MA0509.1.bed b/demo/known_tfbs_chr1_hg38/Rfx1_MA0509.1.bed new file mode 100644 index 0000000..b070819 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/Rfx1_MA0509.1.bed @@ -0,0 +1,355 @@ +chr1 1116410 1116423 Rfx1_MA0509.1 8.492876930303549 + +chr1 1116410 1116423 Rfx1_MA0509.1 7.086389521774277 - +chr1 1324886 1324899 Rfx1_MA0509.1 7.135566463109600 - +chr1 1399512 1399525 Rfx1_MA0509.1 7.733251240466365 - +chr1 1471676 1471689 Rfx1_MA0509.1 8.761771970476371 - +chr1 1511833 1511846 Rfx1_MA0509.1 10.259423797061878 + +chr1 1511882 1511895 Rfx1_MA0509.1 7.203562579057550 + +chr1 1511897 1511910 Rfx1_MA0509.1 7.203562579057550 + +chr1 1512060 1512073 Rfx1_MA0509.1 8.761771970476371 - +chr1 1615295 1615308 Rfx1_MA0509.1 11.425250275760689 + +chr1 1615295 1615308 Rfx1_MA0509.1 10.428344086745525 - +chr1 2391547 2391560 Rfx1_MA0509.1 8.610371732931009 + +chr1 2548472 2548485 Rfx1_MA0509.1 7.483107954789916 - +chr1 2548864 2548877 Rfx1_MA0509.1 9.784216250230445 + +chr1 2548864 2548877 Rfx1_MA0509.1 7.381207492515101 - +chr1 2578460 2578473 Rfx1_MA0509.1 7.381207492515100 + +chr1 2578460 2578473 Rfx1_MA0509.1 9.784216250230445 - +chr1 2643070 2643083 Rfx1_MA0509.1 7.716263466474837 + +chr1 3624743 3624756 Rfx1_MA0509.1 9.957353603420083 + +chr1 3796469 3796482 Rfx1_MA0509.1 7.949901417536510 - +chr1 3857185 3857198 Rfx1_MA0509.1 6.744180509833855 + +chr1 3857309 3857322 Rfx1_MA0509.1 7.411614417302352 - +chr1 5992239 5992252 Rfx1_MA0509.1 7.084553395086228 + +chr1 5992239 5992252 Rfx1_MA0509.1 8.283086504934655 - +chr1 6579845 6579858 Rfx1_MA0509.1 6.757112011297815 - +chr1 6701595 6701608 Rfx1_MA0509.1 6.608589923325034 - +chr1 8397492 8397505 Rfx1_MA0509.1 10.185329965195866 + +chr1 8878596 8878609 Rfx1_MA0509.1 6.594962009059997 - +chr1 8879075 8879088 Rfx1_MA0509.1 7.143301334302194 - +chr1 9069482 9069495 Rfx1_MA0509.1 7.331511628308412 + +chr1 9429044 9429057 Rfx1_MA0509.1 7.748710765133290 - +chr1 9539686 9539699 Rfx1_MA0509.1 9.186229624141347 + +chr1 10032760 10032773 Rfx1_MA0509.1 12.084704321223814 + +chr1 10032760 10032773 Rfx1_MA0509.1 10.400690455164927 - +chr1 10398756 10398769 Rfx1_MA0509.1 9.138313593248743 + +chr1 10398756 10398769 Rfx1_MA0509.1 12.247978762495382 - +chr1 10430736 10430749 Rfx1_MA0509.1 9.173254704726286 + +chr1 10430736 10430749 Rfx1_MA0509.1 7.766767296197018 - +chr1 11273526 11273539 Rfx1_MA0509.1 7.253363793491337 + +chr1 11273526 11273539 Rfx1_MA0509.1 7.630044456807465 - +chr1 11806386 11806399 Rfx1_MA0509.1 9.489324346254158 - +chr1 11934917 11934930 Rfx1_MA0509.1 6.555282468037293 + +chr1 12162134 12162147 Rfx1_MA0509.1 6.692841061293660 + +chr1 14914079 14914092 Rfx1_MA0509.1 7.648161131052578 + +chr1 15526694 15526707 Rfx1_MA0509.1 10.704499604812399 + +chr1 15526694 15526707 Rfx1_MA0509.1 9.298012196283132 - +chr1 15584723 15584736 Rfx1_MA0509.1 6.714360643092729 - +chr1 15835543 15835556 Rfx1_MA0509.1 7.515337445239121 + +chr1 16237219 16237232 Rfx1_MA0509.1 11.360403845644445 + +chr1 16237219 16237232 Rfx1_MA0509.1 14.550059326019113 - +chr1 16367918 16367931 Rfx1_MA0509.1 7.482209032794565 + +chr1 16514596 16514609 Rfx1_MA0509.1 7.065697396713145 - +chr1 16644337 16644350 Rfx1_MA0509.1 6.535077555904842 - +chr1 19210187 19210200 Rfx1_MA0509.1 7.234839505733785 - +chr1 19596866 19596879 Rfx1_MA0509.1 8.869305927892329 + +chr1 20081068 20081081 Rfx1_MA0509.1 9.807749060549630 + +chr1 20508222 20508235 Rfx1_MA0509.1 10.272319347389024 - +chr1 21176653 21176666 Rfx1_MA0509.1 9.355562396845507 + +chr1 21176653 21176666 Rfx1_MA0509.1 6.698772705569909 - +chr1 21762440 21762453 Rfx1_MA0509.1 6.608638787003657 - +chr1 21762743 21762756 Rfx1_MA0509.1 6.655407124114741 + +chr1 21783527 21783540 Rfx1_MA0509.1 9.649353927424524 + +chr1 21783527 21783540 Rfx1_MA0509.1 8.521703679953715 - +chr1 21791675 21791688 Rfx1_MA0509.1 7.391535662175310 - +chr1 21865963 21865976 Rfx1_MA0509.1 9.309438835880364 + +chr1 21865963 21865976 Rfx1_MA0509.1 11.061568592482351 - +chr1 22452005 22452018 Rfx1_MA0509.1 9.869898705816183 + +chr1 23019879 23019892 Rfx1_MA0509.1 9.016119420638942 + +chr1 23778510 23778523 Rfx1_MA0509.1 7.439376711987500 - +chr1 23800824 23800837 Rfx1_MA0509.1 8.118409546904209 + +chr1 25232684 25232697 Rfx1_MA0509.1 7.451277939830970 - +chr1 25239905 25239918 Rfx1_MA0509.1 9.260918234914090 - +chr1 25549812 25549825 Rfx1_MA0509.1 6.623740202071500 - +chr1 25616285 25616298 Rfx1_MA0509.1 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0000000..7282eef --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/Rxra_MA0512.2.bed @@ -0,0 +1,238 @@ +chr1 10144 10157 Rxra_MA0512.2 3.489464445126363 - +chr1 10228 10241 Rxra_MA0512.2 3.489464445126363 - +chr1 10327 10340 Rxra_MA0512.2 3.489464445126363 - +chr1 10387 10400 Rxra_MA0512.2 4.386182312071605 - +chr1 10394 10407 Rxra_MA0512.2 3.489464445126363 - +chr1 10437 10450 Rxra_MA0512.2 3.489464445126363 - +chr1 779231 779244 Rxra_MA0512.2 1.765125643791189 - +chr1 1407335 1407348 Rxra_MA0512.2 2.538063145840773 + +chr1 1407706 1407719 Rxra_MA0512.2 3.892133858014208 - +chr1 1724364 1724377 Rxra_MA0512.2 2.380975844341327 - +chr1 2413032 2413045 Rxra_MA0512.2 1.599015438105919 - +chr1 2556006 2556019 Rxra_MA0512.2 2.594583017072739 - +chr1 3491662 3491675 Rxra_MA0512.2 2.632174557708363 - +chr1 3666648 3666661 Rxra_MA0512.2 12.532455434561102 - +chr1 3676938 3676951 Rxra_MA0512.2 2.785390549831281 - +chr1 3900368 3900381 Rxra_MA0512.2 2.224244794154265 + +chr1 5993055 5993068 Rxra_MA0512.2 4.804554894691609 - +chr1 6026231 6026244 Rxra_MA0512.2 1.371674969350160 + +chr1 6235406 6235419 Rxra_MA0512.2 4.232909437508189 - +chr1 6624923 6624936 Rxra_MA0512.2 2.506952185979282 + +chr1 6701806 6701819 Rxra_MA0512.2 7.447972156663409 - +chr1 6861409 6861422 Rxra_MA0512.2 1.982891427768361 - +chr1 9163770 9163783 Rxra_MA0512.2 3.139847658790284 + +chr1 9942748 9942761 Rxra_MA0512.2 8.333796941049018 + +chr1 10986206 10986219 Rxra_MA0512.2 2.209960141567086 + +chr1 11980356 11980369 Rxra_MA0512.2 1.625076682305737 + +chr1 12040521 12040534 Rxra_MA0512.2 1.726947487467659 + +chr1 15526734 15526747 Rxra_MA0512.2 3.320653951440457 + +chr1 15617714 15617727 Rxra_MA0512.2 6.723480396739517 - +chr1 15834791 15834804 Rxra_MA0512.2 1.816968376237292 + +chr1 15975657 15975670 Rxra_MA0512.2 6.489005541047193 + +chr1 16236843 16236856 Rxra_MA0512.2 2.139611045610546 - +chr1 21345825 21345838 Rxra_MA0512.2 2.385536263446862 - +chr1 21866415 21866428 Rxra_MA0512.2 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2.320866225091748 + +chr1 31549123 31549136 Rxra_MA0512.2 3.240299982393241 + +chr1 32108252 32108265 Rxra_MA0512.2 1.570087560059827 + +chr1 32222382 32222395 Rxra_MA0512.2 1.253531327498078 - +chr1 32394444 32394457 Rxra_MA0512.2 11.686518349541359 - +chr1 32981032 32981045 Rxra_MA0512.2 9.510528409463465 - +chr1 32981541 32981554 Rxra_MA0512.2 1.444396954179183 - +chr1 33181983 33181996 Rxra_MA0512.2 1.372861800414177 - +chr1 34360911 34360924 Rxra_MA0512.2 6.224924433519410 - +chr1 34859771 34859784 Rxra_MA0512.2 5.752369165513137 - +chr1 34860045 34860058 Rxra_MA0512.2 3.627845873777355 - +chr1 36464278 36464291 Rxra_MA0512.2 11.088054309701992 - +chr1 37554347 37554360 Rxra_MA0512.2 1.978265187395319 + +chr1 38475063 38475076 Rxra_MA0512.2 2.626607711937337 - +chr1 38475327 38475340 Rxra_MA0512.2 4.673488032073709 + +chr1 40161604 40161617 Rxra_MA0512.2 1.479730382283105 - +chr1 40374092 40374105 Rxra_MA0512.2 1.296534563322058 - +chr1 40532267 40532280 Rxra_MA0512.2 1.243789213458391 + +chr1 40691517 40691530 Rxra_MA0512.2 4.849834242900472 + +chr1 41728536 41728549 Rxra_MA0512.2 1.283419923255742 + +chr1 41751236 41751249 Rxra_MA0512.2 5.074558478341785 + +chr1 41751490 41751503 Rxra_MA0512.2 2.301336327144011 - +chr1 42658197 42658210 Rxra_MA0512.2 8.887289192512611 - +chr1 42846462 42846475 Rxra_MA0512.2 3.555780681779642 + +chr1 42924516 42924529 Rxra_MA0512.2 3.136952923814055 - +chr1 42931390 42931403 Rxra_MA0512.2 2.699723276465317 + +chr1 43389907 43389920 Rxra_MA0512.2 10.039426121710529 + +chr1 43991823 43991836 Rxra_MA0512.2 1.384368484084608 - +chr1 44213713 44213726 Rxra_MA0512.2 14.038604910873060 - +chr1 44355265 44355278 Rxra_MA0512.2 3.550478203771406 - +chr1 44631924 44631937 Rxra_MA0512.2 11.111648532606365 - +chr1 45011873 45011886 Rxra_MA0512.2 2.980442038977487 - +chr1 45583953 45583966 Rxra_MA0512.2 2.326681868826628 - +chr1 45686781 45686794 Rxra_MA0512.2 4.367237768641278 - +chr1 46198490 46198503 Rxra_MA0512.2 1.647080093242289 + +chr1 46442439 46442452 Rxra_MA0512.2 4.264517257795370 - +chr1 47334780 47334793 Rxra_MA0512.2 4.973865300717195 - +chr1 47436880 47436893 Rxra_MA0512.2 7.601359675808771 + +chr1 48498336 48498349 Rxra_MA0512.2 1.249059307149611 - +chr1 51518910 51518923 Rxra_MA0512.2 1.547481791780390 + +chr1 52637296 52637309 Rxra_MA0512.2 1.304199444896408 - +chr1 53238711 53238724 Rxra_MA0512.2 2.846327441561913 + +chr1 54801189 54801202 Rxra_MA0512.2 1.906740789052074 - +chr1 56821047 56821060 Rxra_MA0512.2 2.872455664000594 + +chr1 58573532 58573545 Rxra_MA0512.2 1.559886082451176 - +chr1 58573890 58573903 Rxra_MA0512.2 3.773762155496875 + +chr1 58815868 58815881 Rxra_MA0512.2 3.834600877233125 + +chr1 59296619 59296632 Rxra_MA0512.2 3.318375311491732 + +chr1 59433035 59433048 Rxra_MA0512.2 2.267730464843705 - +chr1 59697082 59697095 Rxra_MA0512.2 2.403314185893248 + +chr1 60978757 60978770 Rxra_MA0512.2 1.501540651324434 + +chr1 61077517 61077530 Rxra_MA0512.2 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1.857623505617108 + +chr1 73573432 73573445 Rxra_MA0512.2 4.264657505956244 + +chr1 74732843 74732856 Rxra_MA0512.2 1.777026555029473 + +chr1 75785492 75785505 Rxra_MA0512.2 6.802267936354443 + +chr1 78377571 78377584 Rxra_MA0512.2 2.614041357701774 + +chr1 79260011 79260024 Rxra_MA0512.2 7.330166358060250 - +chr1 79461192 79461205 Rxra_MA0512.2 1.887881818198210 + +chr1 79468504 79468517 Rxra_MA0512.2 3.632782653301861 + +chr1 79695239 79695252 Rxra_MA0512.2 1.326238069663047 + +chr1 80639629 80639642 Rxra_MA0512.2 2.037462866042469 - +chr1 81437958 81437971 Rxra_MA0512.2 1.489564453067704 - +chr1 81548973 81548986 Rxra_MA0512.2 1.578954929940839 + +chr1 81549091 81549104 Rxra_MA0512.2 4.056881124518963 - +chr1 81598164 81598177 Rxra_MA0512.2 1.350843248035286 + +chr1 81801263 81801276 Rxra_MA0512.2 3.977300159277858 - +chr1 82152784 82152797 Rxra_MA0512.2 4.483385516317725 - +chr1 82152838 82152851 Rxra_MA0512.2 4.260458652232990 - +chr1 83406112 83406125 Rxra_MA0512.2 3.828189460601459 + +chr1 83501146 83501159 Rxra_MA0512.2 2.461520120400903 - +chr1 83508543 83508556 Rxra_MA0512.2 1.740347641502820 - +chr1 84995975 84995988 Rxra_MA0512.2 4.121977720052056 - +chr1 86755674 86755687 Rxra_MA0512.2 2.852348357227404 + +chr1 86756047 86756060 Rxra_MA0512.2 3.233859039252446 - +chr1 86915362 86915375 Rxra_MA0512.2 2.796512408392441 + +chr1 86915369 86915382 Rxra_MA0512.2 1.285994844171275 + +chr1 87449465 87449478 Rxra_MA0512.2 1.481588360361396 + +chr1 87587962 87587975 Rxra_MA0512.2 5.238671663870793 - +chr1 88868434 88868447 Rxra_MA0512.2 8.707435499505596 - +chr1 90509485 90509498 Rxra_MA0512.2 4.651076248063951 + +chr1 91572236 91572249 Rxra_MA0512.2 1.424431497389740 + +chr1 91804742 91804755 Rxra_MA0512.2 5.077499399238436 - +chr1 92080442 92080455 Rxra_MA0512.2 4.770886520578095 - +chr1 92537167 92537180 Rxra_MA0512.2 3.833569940130345 - +chr1 92584296 92584309 Rxra_MA0512.2 2.444335234439133 + +chr1 92951282 92951295 Rxra_MA0512.2 2.328523802869407 - +chr1 92951289 92951302 Rxra_MA0512.2 2.328523802869407 - +chr1 93180123 93180136 Rxra_MA0512.2 4.311895528506668 + +chr1 93615714 93615727 Rxra_MA0512.2 7.209624681058472 + +chr1 93704357 93704370 Rxra_MA0512.2 4.056881124518963 + +chr1 93708199 93708212 Rxra_MA0512.2 5.891208497307943 - +chr1 93909675 93909688 Rxra_MA0512.2 2.055676337903181 + +chr1 95072940 95072953 Rxra_MA0512.2 4.945373289524844 + +chr1 96722475 96722488 Rxra_MA0512.2 2.179435992998184 + +chr1 97920505 97920518 Rxra_MA0512.2 1.489118880499838 + +chr1 97921222 97921235 Rxra_MA0512.2 3.259738619626796 - +chr1 98054494 98054507 Rxra_MA0512.2 3.530186891792866 + +chr1 98662132 98662145 Rxra_MA0512.2 6.299082399711269 - +chr1 99759091 99759104 Rxra_MA0512.2 3.963952350782639 - +chr1 99759158 99759171 Rxra_MA0512.2 2.748885345827090 - +chr1 99970056 99970069 Rxra_MA0512.2 2.752767821884311 + +chr1 100076872 100076885 Rxra_MA0512.2 1.221539760055431 - +chr1 100250036 100250049 Rxra_MA0512.2 2.382870291915524 + +chr1 101025938 101025951 Rxra_MA0512.2 2.606201365977569 + +chr1 101179298 101179311 Rxra_MA0512.2 1.863988510156779 + +chr1 101407747 101407760 Rxra_MA0512.2 1.660306937050971 + +chr1 101407754 101407767 Rxra_MA0512.2 2.286859897758470 + +chr1 103525294 103525307 Rxra_MA0512.2 2.297861453628006 - +chr1 106996072 106996085 Rxra_MA0512.2 1.479582996017050 - +chr1 107016242 107016255 Rxra_MA0512.2 2.161755372406171 + +chr1 107499328 107499341 Rxra_MA0512.2 1.376187703153596 - +chr1 107963851 107963864 Rxra_MA0512.2 2.114508908314207 - +chr1 107963858 107963871 Rxra_MA0512.2 2.568710928389459 - +chr1 108692758 108692771 Rxra_MA0512.2 3.200184167839343 - +chr1 109425990 109426003 Rxra_MA0512.2 7.223033498495974 - +chr1 109984691 109984704 Rxra_MA0512.2 1.788597514038563 - +chr1 110407967 110407980 Rxra_MA0512.2 6.649495236004523 - +chr1 110619698 110619711 Rxra_MA0512.2 5.798005905597649 + +chr1 110787718 110787731 Rxra_MA0512.2 1.848770710658652 - +chr1 111508105 111508118 Rxra_MA0512.2 5.964531262694621 + +chr1 112619393 112619406 Rxra_MA0512.2 3.233882355310354 - +chr1 112674779 112674792 Rxra_MA0512.2 3.879080403549745 + +chr1 112674786 112674799 Rxra_MA0512.2 2.008664499549029 + +chr1 113929037 113929050 Rxra_MA0512.2 2.168736579161953 + +chr1 114717092 114717105 Rxra_MA0512.2 1.799275088090279 - +chr1 116504721 116504734 Rxra_MA0512.2 3.535684646441216 - +chr1 116737884 116737897 Rxra_MA0512.2 5.181224028165432 - +chr1 116738963 116738976 Rxra_MA0512.2 2.748713234282685 + +chr1 117059534 117059547 Rxra_MA0512.2 2.472018093865119 - +chr1 117367108 117367121 Rxra_MA0512.2 1.276741870323816 - +chr1 117654574 117654587 Rxra_MA0512.2 2.799913746199112 - +chr1 118960408 118960421 Rxra_MA0512.2 1.372862416532302 - +chr1 119266613 119266626 Rxra_MA0512.2 9.502471534209221 - +chr1 119323841 119323854 Rxra_MA0512.2 3.207567415982246 + +chr1 120850556 120850569 Rxra_MA0512.2 5.876388337654684 - +chr1 144412990 144413003 Rxra_MA0512.2 5.876388337654684 + +chr1 145281530 145281543 Rxra_MA0512.2 5.876388337654684 + +chr1 145927491 145927504 Rxra_MA0512.2 5.605259443876755 + +chr1 146938467 146938480 Rxra_MA0512.2 1.537847772893205 + +chr1 147669819 147669832 Rxra_MA0512.2 4.485837747655959 - +chr1 148152164 148152177 Rxra_MA0512.2 1.537847772893205 - +chr1 148523015 148523028 Rxra_MA0512.2 5.876388337654684 + +chr1 150010076 150010089 Rxra_MA0512.2 2.845477202315786 - +chr1 150562384 150562397 Rxra_MA0512.2 1.580248022186989 - +chr1 150562607 150562620 Rxra_MA0512.2 6.289244359702029 - +chr1 151070793 151070806 Rxra_MA0512.2 3.595072721120514 + +chr1 151156341 151156354 Rxra_MA0512.2 1.819903832870600 - +chr1 151156520 151156533 Rxra_MA0512.2 2.236685625171805 - +chr1 151189793 151189806 Rxra_MA0512.2 2.417552067777767 - +chr1 151282204 151282217 Rxra_MA0512.2 3.844298375332057 + +chr1 151327234 151327247 Rxra_MA0512.2 6.200306838117013 + +chr1 152908478 152908491 Rxra_MA0512.2 2.138105901058728 - +chr1 153977354 153977367 Rxra_MA0512.2 1.678022782609019 + +chr1 154272694 154272707 Rxra_MA0512.2 6.932341579159684 + +chr1 154608407 154608420 Rxra_MA0512.2 3.098247837580644 - +chr1 154860149 154860162 Rxra_MA0512.2 4.149411839673910 + +chr1 154974391 154974404 Rxra_MA0512.2 6.293410881200835 - +chr1 154974398 154974411 Rxra_MA0512.2 1.966507997967196 - +chr1 155017465 155017478 Rxra_MA0512.2 2.968279826244152 + +chr1 156054574 156054587 Rxra_MA0512.2 2.784527956438100 + +chr1 156114847 156114860 Rxra_MA0512.2 3.316997613420138 - +chr1 156488787 156488800 Rxra_MA0512.2 3.607951509771813 + +chr1 156591945 156591958 Rxra_MA0512.2 1.818598005613274 + +chr1 156728903 156728916 Rxra_MA0512.2 2.196011790337256 - +chr1 156740833 156740846 Rxra_MA0512.2 4.857989240332063 + +chr1 157176769 157176782 Rxra_MA0512.2 1.229722185586358 - +chr1 158179690 158179703 Rxra_MA0512.2 6.787264699993528 - +chr1 158286034 158286047 Rxra_MA0512.2 4.145732189107383 + +chr1 159925571 159925584 Rxra_MA0512.2 2.032045381922689 + +chr1 160263063 160263076 Rxra_MA0512.2 1.727635458811964 - +chr1 160343127 160343140 Rxra_MA0512.2 6.633656741203954 - diff --git a/demo/known_tfbs_chr1_hg38/SCRT1_MA0743.1.bed b/demo/known_tfbs_chr1_hg38/SCRT1_MA0743.1.bed new file mode 100644 index 0000000..35ff567 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/SCRT1_MA0743.1.bed @@ -0,0 +1,118 @@ +chr1 779268 779282 SCRT1_MA0743.1 4.428134024788273 - +chr1 1013586 1013600 SCRT1_MA0743.1 5.812816226469916 + +chr1 2050224 2050238 SCRT1_MA0743.1 8.304562460173933 + +chr1 2556422 2556436 SCRT1_MA0743.1 4.372720954233525 - +chr1 2653164 2653178 SCRT1_MA0743.1 4.589486676875519 + +chr1 2653887 2653901 SCRT1_MA0743.1 4.589486676875519 + +chr1 2653967 2653981 SCRT1_MA0743.1 4.289382408498903 + +chr1 2654930 2654944 SCRT1_MA0743.1 7.985112438202416 + +chr1 2683550 2683564 SCRT1_MA0743.1 4.289382408498903 + +chr1 2684353 2684367 SCRT1_MA0743.1 4.589486676875519 + +chr1 2688488 2688502 SCRT1_MA0743.1 4.589486676875519 + +chr1 2750241 2750255 SCRT1_MA0743.1 6.599566867556313 + +chr1 2750603 2750617 SCRT1_MA0743.1 4.589486676875519 + +chr1 3900602 3900616 SCRT1_MA0743.1 6.483851440037617 - +chr1 3910870 3910884 SCRT1_MA0743.1 6.080936274831524 - +chr1 6359568 6359582 SCRT1_MA0743.1 6.054960134348811 - +chr1 8878324 8878338 SCRT1_MA0743.1 6.349231377448632 - +chr1 10430560 10430574 SCRT1_MA0743.1 4.428807223349086 + +chr1 10940314 10940328 SCRT1_MA0743.1 6.957052530114078 + +chr1 13730748 13730762 SCRT1_MA0743.1 8.620300936799387 + +chr1 16236560 16236574 SCRT1_MA0743.1 12.608931627527879 + +chr1 16440845 16440859 SCRT1_MA0743.1 6.239847224652374 + +chr1 17536350 17536364 SCRT1_MA0743.1 4.617138148969460 - +chr1 23959719 23959733 SCRT1_MA0743.1 6.473432502510130 + +chr1 25337972 25337986 SCRT1_MA0743.1 7.986534754687698 - +chr1 25997873 25997887 SCRT1_MA0743.1 7.525922283108001 + +chr1 26336600 26336614 SCRT1_MA0743.1 6.305761864042526 - +chr1 26865846 26865860 SCRT1_MA0743.1 5.516261093397738 - +chr1 26921589 26921603 SCRT1_MA0743.1 4.400284811423697 - +chr1 27357652 27357666 SCRT1_MA0743.1 11.831512657187382 + +chr1 27489969 27489983 SCRT1_MA0743.1 7.760704713025712 - +chr1 28247435 28247449 SCRT1_MA0743.1 4.777241425858275 - +chr1 31065807 31065821 SCRT1_MA0743.1 5.753027549221263 + +chr1 31549380 31549394 SCRT1_MA0743.1 6.390992796463500 + +chr1 32013525 32013539 SCRT1_MA0743.1 6.357627968620410 + +chr1 32817744 32817758 SCRT1_MA0743.1 6.942130364201340 - +chr1 32992892 32992906 SCRT1_MA0743.1 6.091724856978542 + +chr1 33472424 33472438 SCRT1_MA0743.1 6.363570505394325 + +chr1 35506337 35506351 SCRT1_MA0743.1 4.090210022732403 - +chr1 36023598 36023612 SCRT1_MA0743.1 6.056156676784545 + +chr1 36386103 36386117 SCRT1_MA0743.1 7.064786892716638 - +chr1 38475000 38475014 SCRT1_MA0743.1 4.898438255425837 - +chr1 39996186 39996200 SCRT1_MA0743.1 5.210097944530931 + +chr1 40232658 40232672 SCRT1_MA0743.1 11.508794407839323 + +chr1 44674274 44674288 SCRT1_MA0743.1 4.482368477936545 + +chr1 44730828 44730842 SCRT1_MA0743.1 9.226081662462390 - +chr1 51235114 51235128 SCRT1_MA0743.1 13.515359322126002 - +chr1 52366186 52366200 SCRT1_MA0743.1 5.604821350159432 + +chr1 52366253 52366267 SCRT1_MA0743.1 7.733629916751996 + +chr1 55215607 55215621 SCRT1_MA0743.1 8.733545699736768 + +chr1 56296412 56296426 SCRT1_MA0743.1 4.824966942433772 + +chr1 56517089 56517103 SCRT1_MA0743.1 4.956100762631362 + +chr1 57167845 57167859 SCRT1_MA0743.1 5.857060907756656 - +chr1 58546064 58546078 SCRT1_MA0743.1 5.958303940695592 - +chr1 58996863 58996877 SCRT1_MA0743.1 5.919667268931200 + +chr1 62784133 62784147 SCRT1_MA0743.1 7.022710386911931 - +chr1 63368212 63368226 SCRT1_MA0743.1 5.099800801080239 + +chr1 65148981 65148995 SCRT1_MA0743.1 10.041890733696258 - +chr1 65149016 65149030 SCRT1_MA0743.1 7.398620918645651 - +chr1 65812313 65812327 SCRT1_MA0743.1 4.515951998837605 - +chr1 65895314 65895328 SCRT1_MA0743.1 5.382342652285985 + +chr1 66924850 66924864 SCRT1_MA0743.1 4.866584081599987 + +chr1 66930512 66930526 SCRT1_MA0743.1 9.302792965309658 - +chr1 66984644 66984658 SCRT1_MA0743.1 10.595529443115659 + +chr1 67054537 67054551 SCRT1_MA0743.1 5.406699618386476 + +chr1 67112871 67112885 SCRT1_MA0743.1 7.187640005243281 + +chr1 69966990 69967004 SCRT1_MA0743.1 4.729397214056987 + +chr1 69967420 69967434 SCRT1_MA0743.1 8.852590568222451 - +chr1 70359460 70359474 SCRT1_MA0743.1 5.427375276227036 + +chr1 71081303 71081317 SCRT1_MA0743.1 5.263398174641878 + +chr1 72623357 72623371 SCRT1_MA0743.1 4.567766039361408 + +chr1 74198542 74198556 SCRT1_MA0743.1 4.093960033853252 - +chr1 75339236 75339250 SCRT1_MA0743.1 5.050643323310885 + +chr1 75615157 75615171 SCRT1_MA0743.1 5.674224501165364 + +chr1 75726939 75726953 SCRT1_MA0743.1 4.477897906152599 + +chr1 75908934 75908948 SCRT1_MA0743.1 6.093859664481601 - +chr1 76154489 76154503 SCRT1_MA0743.1 7.169749186948443 - +chr1 76191404 76191418 SCRT1_MA0743.1 7.818375787175704 + +chr1 76871511 76871525 SCRT1_MA0743.1 13.930649726004891 + +chr1 77413433 77413447 SCRT1_MA0743.1 6.640828350538198 + +chr1 78061123 78061137 SCRT1_MA0743.1 4.966308712733396 - +chr1 78649897 78649911 SCRT1_MA0743.1 6.716099827869281 + +chr1 78854926 78854940 SCRT1_MA0743.1 4.088020740089789 - +chr1 79777842 79777856 SCRT1_MA0743.1 4.243176237121746 + +chr1 80639759 80639773 SCRT1_MA0743.1 4.194633045026651 - +chr1 81549716 81549730 SCRT1_MA0743.1 5.805428825749686 - +chr1 82152761 82152775 SCRT1_MA0743.1 9.719910590831612 - +chr1 82153319 82153333 SCRT1_MA0743.1 5.240974790280510 - +chr1 83508118 83508132 SCRT1_MA0743.1 4.582166906955900 + +chr1 84574580 84574594 SCRT1_MA0743.1 10.706473468184722 + +chr1 84599878 84599892 SCRT1_MA0743.1 5.119153114201669 - +chr1 84690747 84690761 SCRT1_MA0743.1 7.154105923452851 - +chr1 84854282 84854296 SCRT1_MA0743.1 8.934723526569552 - +chr1 84945561 84945575 SCRT1_MA0743.1 9.268974594183454 + +chr1 85048089 85048103 SCRT1_MA0743.1 8.105667508603139 + +chr1 85576706 85576720 SCRT1_MA0743.1 5.464242476380893 + +chr1 85991324 85991338 SCRT1_MA0743.1 4.236672984409583 - +chr1 86015995 86016009 SCRT1_MA0743.1 4.647858749316771 + +chr1 86502271 86502285 SCRT1_MA0743.1 9.331125953624303 + +chr1 86502458 86502472 SCRT1_MA0743.1 6.434879026293647 + +chr1 87052122 87052136 SCRT1_MA0743.1 4.812788550291376 - +chr1 87464457 87464471 SCRT1_MA0743.1 9.037261454662445 - +chr1 88684973 88684987 SCRT1_MA0743.1 5.594785453353364 - +chr1 89553020 89553034 SCRT1_MA0743.1 5.601528572265225 - +chr1 89692849 89692863 SCRT1_MA0743.1 4.669143824437421 + +chr1 90509880 90509894 SCRT1_MA0743.1 7.999761504868708 - +chr1 92538312 92538326 SCRT1_MA0743.1 6.369717768842645 - +chr1 92962609 92962623 SCRT1_MA0743.1 5.096270781650674 - +chr1 93703926 93703940 SCRT1_MA0743.1 6.650615089435569 + +chr1 93847562 93847576 SCRT1_MA0743.1 10.410654873639606 + +chr1 94854645 94854659 SCRT1_MA0743.1 5.975498087444856 - +chr1 97791478 97791492 SCRT1_MA0743.1 6.144897838482771 + +chr1 100075813 100075827 SCRT1_MA0743.1 5.685177036989804 + +chr1 100351334 100351348 SCRT1_MA0743.1 5.465452312461306 + +chr1 101051873 101051887 SCRT1_MA0743.1 10.515784547464625 - +chr1 101128255 101128269 SCRT1_MA0743.1 6.416842200674362 + +chr1 101199275 101199289 SCRT1_MA0743.1 11.242578906480734 + +chr1 101309919 101309933 SCRT1_MA0743.1 7.037839127442759 - diff --git a/demo/known_tfbs_chr1_hg38/SCRT2_MA0744.1.bed b/demo/known_tfbs_chr1_hg38/SCRT2_MA0744.1.bed new file mode 100644 index 0000000..f2fda05 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/SCRT2_MA0744.1.bed @@ -0,0 +1,118 @@ +chr1 778988 779000 SCRT2_MA0744.1 6.552579056847733 - +chr1 1407532 1407544 SCRT2_MA0744.1 4.902556189260670 - +chr1 2050224 2050236 SCRT2_MA0744.1 7.702984078144299 + +chr1 2654930 2654942 SCRT2_MA0744.1 7.614932057444390 + +chr1 2655555 2655567 SCRT2_MA0744.1 4.940214722713995 + +chr1 2750241 2750253 SCRT2_MA0744.1 4.612166135651324 + +chr1 3900604 3900616 SCRT2_MA0744.1 5.313731519959955 - +chr1 6026668 6026680 SCRT2_MA0744.1 4.553457028667809 - +chr1 8097605 8097617 SCRT2_MA0744.1 6.830189032712477 - +chr1 8764621 8764633 SCRT2_MA0744.1 6.861957340469552 + +chr1 8878326 8878338 SCRT2_MA0744.1 6.192279309688935 - +chr1 9069521 9069533 SCRT2_MA0744.1 6.341146821596217 - +chr1 10210834 10210846 SCRT2_MA0744.1 3.981910250023934 - +chr1 10430560 10430572 SCRT2_MA0744.1 6.003406276335083 + +chr1 11012598 11012610 SCRT2_MA0744.1 6.577712536946574 + +chr1 11262583 11262595 SCRT2_MA0744.1 4.239429282101665 + +chr1 13730748 13730760 SCRT2_MA0744.1 5.937717177649292 + +chr1 16236560 16236572 SCRT2_MA0744.1 13.114945752939001 + +chr1 18956159 18956171 SCRT2_MA0744.1 5.439405225215850 + +chr1 21293754 21293766 SCRT2_MA0744.1 6.582729838533769 + +chr1 21345714 21345726 SCRT2_MA0744.1 4.170366381230375 - +chr1 22039930 22039942 SCRT2_MA0744.1 4.440943117860736 + +chr1 23959719 23959731 SCRT2_MA0744.1 6.456446034751512 + +chr1 24392502 24392514 SCRT2_MA0744.1 4.458746237866664 - +chr1 25233257 25233269 SCRT2_MA0744.1 4.997166538438210 - +chr1 25337974 25337986 SCRT2_MA0744.1 10.112133424172734 - +chr1 26473219 26473231 SCRT2_MA0744.1 9.248090070294463 - +chr1 26921591 26921603 SCRT2_MA0744.1 3.934398597014207 - +chr1 27357652 27357664 SCRT2_MA0744.1 10.763141473262001 + +chr1 27489971 27489983 SCRT2_MA0744.1 8.634186387600476 - +chr1 28247437 28247449 SCRT2_MA0744.1 4.306871907148267 - +chr1 31549380 31549392 SCRT2_MA0744.1 5.550846236662595 + +chr1 32627697 32627709 SCRT2_MA0744.1 5.613352592676853 - +chr1 32817746 32817758 SCRT2_MA0744.1 7.561234192758960 - +chr1 33099500 33099512 SCRT2_MA0744.1 7.444722655686386 - +chr1 33099542 33099554 SCRT2_MA0744.1 6.606719081611636 - +chr1 33472424 33472436 SCRT2_MA0744.1 8.707022617948272 + +chr1 36464009 36464021 SCRT2_MA0744.1 6.175988466254506 - +chr1 36464162 36464174 SCRT2_MA0744.1 4.048523773101490 - +chr1 38475002 38475014 SCRT2_MA0744.1 3.872068904738364 - +chr1 39902116 39902128 SCRT2_MA0744.1 4.739741521684808 + +chr1 40097387 40097399 SCRT2_MA0744.1 4.391800531622806 + +chr1 40161211 40161223 SCRT2_MA0744.1 5.955602520228598 - +chr1 40161583 40161595 SCRT2_MA0744.1 7.367254484428414 + +chr1 40232658 40232670 SCRT2_MA0744.1 10.968954244720708 + +chr1 43221657 43221669 SCRT2_MA0744.1 8.197163505894093 - +chr1 43853908 43853920 SCRT2_MA0744.1 5.185321231062594 - +chr1 44674274 44674286 SCRT2_MA0744.1 4.202294891290908 + +chr1 44730830 44730842 SCRT2_MA0744.1 4.869433350078407 - +chr1 45053098 45053110 SCRT2_MA0744.1 5.476479809405221 + +chr1 45583544 45583556 SCRT2_MA0744.1 4.623763628533914 - +chr1 45750893 45750905 SCRT2_MA0744.1 5.686401072968662 + +chr1 46604503 46604515 SCRT2_MA0744.1 7.201086716407820 + +chr1 50725039 50725051 SCRT2_MA0744.1 4.442618482621165 + +chr1 51235116 51235128 SCRT2_MA0744.1 13.542985431207914 - +chr1 51518804 51518816 SCRT2_MA0744.1 5.941549899076216 + +chr1 52056559 52056571 SCRT2_MA0744.1 4.279881512570890 - +chr1 52366186 52366198 SCRT2_MA0744.1 6.956375706706267 + +chr1 52366253 52366265 SCRT2_MA0744.1 7.928491227145384 + +chr1 53220502 53220514 SCRT2_MA0744.1 4.558220728270367 - +chr1 55215607 55215619 SCRT2_MA0744.1 8.144605998625888 + +chr1 56296412 56296424 SCRT2_MA0744.1 5.080187022203519 + +chr1 57167847 57167859 SCRT2_MA0744.1 4.890300883735931 - +chr1 58699755 58699767 SCRT2_MA0744.1 4.292272709280413 + +chr1 62437323 62437335 SCRT2_MA0744.1 7.473539795805436 - +chr1 64223861 64223873 SCRT2_MA0744.1 4.540960815656952 + +chr1 64956707 64956719 SCRT2_MA0744.1 3.992411321992489 + +chr1 64960836 64960848 SCRT2_MA0744.1 4.166429833481971 + +chr1 65148983 65148995 SCRT2_MA0744.1 8.796925027883884 - +chr1 65149018 65149030 SCRT2_MA0744.1 7.387525739607426 - +chr1 65895314 65895326 SCRT2_MA0744.1 3.842053367873339 + +chr1 66445787 66445799 SCRT2_MA0744.1 4.574247741444258 - +chr1 66924850 66924862 SCRT2_MA0744.1 3.883344448034546 + +chr1 66930514 66930526 SCRT2_MA0744.1 6.716796994127173 - +chr1 66984644 66984656 SCRT2_MA0744.1 10.586513989648168 + +chr1 67736086 67736098 SCRT2_MA0744.1 4.008071212915955 + +chr1 68181439 68181451 SCRT2_MA0744.1 5.216115358961664 - +chr1 69966990 69967002 SCRT2_MA0744.1 4.506493779377841 + +chr1 69967422 69967434 SCRT2_MA0744.1 7.388715264012383 - +chr1 71053737 71053749 SCRT2_MA0744.1 4.145187068165669 - +chr1 75908936 75908948 SCRT2_MA0744.1 6.292906587334270 - +chr1 76154491 76154503 SCRT2_MA0744.1 6.032494231904377 - +chr1 76191404 76191416 SCRT2_MA0744.1 7.640453065435594 + +chr1 76871511 76871523 SCRT2_MA0744.1 13.542985431207912 + +chr1 77413433 77413445 SCRT2_MA0744.1 5.514398203612287 + +chr1 78649897 78649909 SCRT2_MA0744.1 5.913857870006380 + +chr1 79519559 79519571 SCRT2_MA0744.1 6.041070613620314 - +chr1 83485865 83485877 SCRT2_MA0744.1 5.843146464484007 + +chr1 84506040 84506052 SCRT2_MA0744.1 5.321519514491147 - +chr1 84574580 84574592 SCRT2_MA0744.1 6.829072999130690 + +chr1 84945561 84945573 SCRT2_MA0744.1 7.188036888855026 + +chr1 85048089 85048101 SCRT2_MA0744.1 5.937717177649292 + +chr1 85148847 85148859 SCRT2_MA0744.1 8.610186241195183 + +chr1 85200676 85200688 SCRT2_MA0744.1 3.928039668695289 - +chr1 86502271 86502283 SCRT2_MA0744.1 6.961767223436083 + +chr1 86502654 86502666 SCRT2_MA0744.1 7.253199292426855 + +chr1 87046176 87046188 SCRT2_MA0744.1 4.041892965229453 - +chr1 89525284 89525296 SCRT2_MA0744.1 7.367254484428414 + +chr1 89553022 89553034 SCRT2_MA0744.1 4.215204727381566 - +chr1 89681303 89681315 SCRT2_MA0744.1 6.281927895197721 + +chr1 90509434 90509446 SCRT2_MA0744.1 5.919665539285920 - +chr1 91166037 91166049 SCRT2_MA0744.1 4.762869798213485 - +chr1 92538314 92538326 SCRT2_MA0744.1 4.688033293919135 - +chr1 92962473 92962485 SCRT2_MA0744.1 7.817246529575166 - +chr1 92962611 92962623 SCRT2_MA0744.1 5.184306643162848 - +chr1 93847562 93847574 SCRT2_MA0744.1 9.271259186386114 + +chr1 93879073 93879085 SCRT2_MA0744.1 4.955404693915586 - +chr1 94418181 94418193 SCRT2_MA0744.1 4.707393665233655 + +chr1 94721312 94721324 SCRT2_MA0744.1 4.668857209923182 + +chr1 97921316 97921328 SCRT2_MA0744.1 6.191575068649613 + +chr1 101051875 101051887 SCRT2_MA0744.1 12.193985013981299 - +chr1 101128255 101128267 SCRT2_MA0744.1 4.795452295300414 + +chr1 101199275 101199287 SCRT2_MA0744.1 10.988184954136971 + +chr1 101293420 101293432 SCRT2_MA0744.1 4.542527961121763 - +chr1 101309496 101309508 SCRT2_MA0744.1 6.259300044699189 - +chr1 101309921 101309933 SCRT2_MA0744.1 8.459397893519144 - +chr1 101407779 101407791 SCRT2_MA0744.1 5.050207149956806 + +chr1 101438218 101438230 SCRT2_MA0744.1 4.033187345608208 - diff --git a/demo/known_tfbs_chr1_hg38/SHOX_MA0630.1.bed b/demo/known_tfbs_chr1_hg38/SHOX_MA0630.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/SIX1_MA1118.1.bed b/demo/known_tfbs_chr1_hg38/SIX1_MA1118.1.bed new file mode 100644 index 0000000..0ca208c --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/SIX1_MA1118.1.bed @@ -0,0 +1,119 @@ +chr1 9429017 9429027 SIX1_MA1118.1 8.612716230688806 + +chr1 9950689 9950699 SIX1_MA1118.1 8.186952371360565 + +chr1 11805983 11805993 SIX1_MA1118.1 9.093951958338959 - +chr1 11908117 11908127 SIX1_MA1118.1 8.122362509525628 + +chr1 13730886 13730896 SIX1_MA1118.1 8.525672430935268 - +chr1 20508123 20508133 SIX1_MA1118.1 7.632482362230231 + +chr1 20696812 20696822 SIX1_MA1118.1 8.263905288400775 - +chr1 25676180 25676190 SIX1_MA1118.1 7.543263414854511 + +chr1 26787604 26787614 SIX1_MA1118.1 7.847390367762922 - +chr1 27772818 27772828 SIX1_MA1118.1 7.779855839220499 - +chr1 28370197 28370207 SIX1_MA1118.1 8.154825968464589 - +chr1 28370209 28370219 SIX1_MA1118.1 8.154825968464589 + +chr1 29181951 29181961 SIX1_MA1118.1 8.035232095924853 + +chr1 32992280 32992290 SIX1_MA1118.1 9.565339944504247 + +chr1 34530419 34530429 SIX1_MA1118.1 8.515263864090256 - +chr1 35079460 35079470 SIX1_MA1118.1 7.847390367762922 - +chr1 36386104 36386114 SIX1_MA1118.1 7.777080016440415 + +chr1 36450727 36450737 SIX1_MA1118.1 7.716837751111713 - +chr1 38028244 38028254 SIX1_MA1118.1 7.477901123771279 - +chr1 38173437 38173447 SIX1_MA1118.1 7.518254248461551 - +chr1 38873559 38873569 SIX1_MA1118.1 7.252707636113632 - +chr1 40232677 40232687 SIX1_MA1118.1 10.741610821417984 + +chr1 41920163 41920173 SIX1_MA1118.1 7.383021479937010 - +chr1 43221701 43221711 SIX1_MA1118.1 10.265105782207668 + +chr1 44029906 44029916 SIX1_MA1118.1 8.346411169650237 - +chr1 44721890 44721900 SIX1_MA1118.1 8.263905288400775 + +chr1 44731158 44731168 SIX1_MA1118.1 7.847390367762922 + +chr1 45012219 45012229 SIX1_MA1118.1 7.341691602907761 - +chr1 45394381 45394391 SIX1_MA1118.1 7.502650031702349 - +chr1 48498390 48498400 SIX1_MA1118.1 8.345677269070668 + +chr1 48730268 48730278 SIX1_MA1118.1 8.629662086715806 + +chr1 50969685 50969695 SIX1_MA1118.1 7.284100170733183 + +chr1 50977513 50977523 SIX1_MA1118.1 7.129786313488929 - +chr1 51268318 51268328 SIX1_MA1118.1 7.735095980439336 + +chr1 51284808 51284818 SIX1_MA1118.1 9.591057327473225 - +chr1 51518524 51518534 SIX1_MA1118.1 11.340245523069791 + +chr1 51569658 51569668 SIX1_MA1118.1 7.433141264990114 + +chr1 51879083 51879093 SIX1_MA1118.1 8.115961246666535 + +chr1 52056069 52056079 SIX1_MA1118.1 7.203859397986003 - +chr1 52365830 52365840 SIX1_MA1118.1 8.419014768693138 - +chr1 56330501 56330511 SIX1_MA1118.1 8.575907705183566 - +chr1 58857876 58857886 SIX1_MA1118.1 9.093951958338959 + +chr1 59947582 59947592 SIX1_MA1118.1 8.486688757807844 - +chr1 61319064 61319074 SIX1_MA1118.1 7.406400936305232 + +chr1 61783018 61783028 SIX1_MA1118.1 8.997468774935200 + +chr1 62613786 62613796 SIX1_MA1118.1 8.994304693202325 - +chr1 62687684 62687694 SIX1_MA1118.1 8.419014768693138 - +chr1 64744969 64744979 SIX1_MA1118.1 9.208492412611688 - +chr1 64883153 64883163 SIX1_MA1118.1 7.807149736545661 + +chr1 64957265 64957275 SIX1_MA1118.1 7.995413010192712 - +chr1 66365083 66365093 SIX1_MA1118.1 9.208492412611688 - +chr1 66380686 66380696 SIX1_MA1118.1 7.525994808844970 - +chr1 66396296 66396306 SIX1_MA1118.1 7.641443748944977 - +chr1 66446258 66446268 SIX1_MA1118.1 7.581085306724354 - +chr1 66648860 66648870 SIX1_MA1118.1 7.848255949576003 + +chr1 66758360 66758370 SIX1_MA1118.1 8.400703658901625 - +chr1 66758498 66758508 SIX1_MA1118.1 8.992422625821417 - +chr1 67339820 67339830 SIX1_MA1118.1 7.665895106666519 + +chr1 68497273 68497283 SIX1_MA1118.1 7.744206184809847 - +chr1 70505022 70505032 SIX1_MA1118.1 7.735095980439336 + +chr1 72433376 72433386 SIX1_MA1118.1 8.954024755293347 + +chr1 74579593 74579603 SIX1_MA1118.1 7.581085306724354 + +chr1 76191243 76191253 SIX1_MA1118.1 8.086819174737926 + +chr1 77218853 77218863 SIX1_MA1118.1 8.994304693202325 + +chr1 77759230 77759240 SIX1_MA1118.1 7.164570386086502 + +chr1 77978235 77978245 SIX1_MA1118.1 7.522360212365835 - +chr1 78004111 78004121 SIX1_MA1118.1 12.058715159156865 + +chr1 78145283 78145293 SIX1_MA1118.1 7.603370583981309 + +chr1 78620343 78620353 SIX1_MA1118.1 10.537831668853633 - +chr1 78620434 78620444 SIX1_MA1118.1 8.115961246666535 - +chr1 78649962 78649972 SIX1_MA1118.1 7.457386880534846 - +chr1 79193471 79193481 SIX1_MA1118.1 10.313954020335295 - +chr1 79461116 79461126 SIX1_MA1118.1 9.565339944504247 + +chr1 79472264 79472274 SIX1_MA1118.1 8.111523191342300 - +chr1 79710920 79710930 SIX1_MA1118.1 8.262811109289508 + +chr1 79742316 79742326 SIX1_MA1118.1 8.486688757807844 - +chr1 80640837 80640847 SIX1_MA1118.1 7.205559461727112 + +chr1 80641013 80641023 SIX1_MA1118.1 7.383021479937010 - +chr1 80641020 80641030 SIX1_MA1118.1 7.433141264990114 - +chr1 81548694 81548704 SIX1_MA1118.1 7.341691602907761 - +chr1 81549420 81549430 SIX1_MA1118.1 8.215235616128787 - +chr1 81598086 81598096 SIX1_MA1118.1 8.001401041477903 + +chr1 82153125 82153135 SIX1_MA1118.1 8.053813222605871 - +chr1 83131333 83131343 SIX1_MA1118.1 7.319385766336175 - +chr1 84091035 84091045 SIX1_MA1118.1 7.433141264990114 - +chr1 84271623 84271633 SIX1_MA1118.1 7.209263616471778 + +chr1 84506537 84506547 SIX1_MA1118.1 8.115961246666535 - +chr1 84573411 84573421 SIX1_MA1118.1 7.680364437196319 - +chr1 84599560 84599570 SIX1_MA1118.1 7.784864459288706 - +chr1 84945836 84945846 SIX1_MA1118.1 7.673708631007330 - +chr1 84988935 84988945 SIX1_MA1118.1 7.784864459288706 - +chr1 84996803 84996813 SIX1_MA1118.1 8.784498026280108 + +chr1 85027746 85027756 SIX1_MA1118.1 9.777845227157705 + +chr1 86755954 86755964 SIX1_MA1118.1 7.381572288247633 + +chr1 86774575 86774585 SIX1_MA1118.1 9.169508739484266 + +chr1 87045931 87045941 SIX1_MA1118.1 8.685453876389733 - +chr1 87449600 87449610 SIX1_MA1118.1 7.164570386086502 - +chr1 88192065 88192075 SIX1_MA1118.1 7.847390367762922 + +chr1 88683913 88683923 SIX1_MA1118.1 7.477901123771279 + +chr1 89429196 89429206 SIX1_MA1118.1 8.648365885099459 + +chr1 89692980 89692990 SIX1_MA1118.1 7.581085306724354 + +chr1 90127405 90127415 SIX1_MA1118.1 10.537831668853633 + +chr1 92537269 92537279 SIX1_MA1118.1 7.544698607228624 - +chr1 92538910 92538920 SIX1_MA1118.1 8.311484711525905 + +chr1 92951276 92951286 SIX1_MA1118.1 8.070173837169994 + +chr1 93693404 93693414 SIX1_MA1118.1 7.673708631007330 - +chr1 93693561 93693571 SIX1_MA1118.1 7.581085306724354 - +chr1 93715708 93715718 SIX1_MA1118.1 8.988277178844459 + +chr1 95117371 95117381 SIX1_MA1118.1 8.046160900259068 + +chr1 96955155 96955165 SIX1_MA1118.1 8.304454563504509 + +chr1 97011081 97011091 SIX1_MA1118.1 7.546301234126782 - +chr1 99084612 99084622 SIX1_MA1118.1 8.383499160940511 + +chr1 99228297 99228307 SIX1_MA1118.1 8.111523191342300 + +chr1 100076949 100076959 SIX1_MA1118.1 7.433141264990114 - +chr1 100377807 100377817 SIX1_MA1118.1 7.433141264990114 - +chr1 100536271 100536281 SIX1_MA1118.1 7.475125128357170 + +chr1 101222385 101222395 SIX1_MA1118.1 7.433141264990114 + +chr1 101236386 101236396 SIX1_MA1118.1 8.612716230688806 - +chr1 101293542 101293552 SIX1_MA1118.1 9.208492412611688 - diff --git a/demo/known_tfbs_chr1_hg38/SIX2_MA1119.1.bed b/demo/known_tfbs_chr1_hg38/SIX2_MA1119.1.bed new file mode 100644 index 0000000..0df72cf --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/SIX2_MA1119.1.bed @@ -0,0 +1,353 @@ +chr1 2195223 2195238 SIX2_MA1119.1 6.932446036867905 + +chr1 2300586 2300601 SIX2_MA1119.1 8.549379890582438 - +chr1 6603245 6603260 SIX2_MA1119.1 8.015091420073240 + +chr1 8764605 8764620 SIX2_MA1119.1 7.594940192044330 + +chr1 9429013 9429028 SIX2_MA1119.1 6.963279394639006 + +chr1 10986207 10986222 SIX2_MA1119.1 8.453681979968184 - +chr1 11805982 11805997 SIX2_MA1119.1 9.203945183277526 - +chr1 12047443 12047458 SIX2_MA1119.1 6.940060849794452 - +chr1 13730885 13730900 SIX2_MA1119.1 9.131188580786278 - +chr1 19710964 19710979 SIX2_MA1119.1 7.443326936641775 + +chr1 20696811 20696826 SIX2_MA1119.1 8.402909896100837 - +chr1 23909348 23909363 SIX2_MA1119.1 9.468901238745728 + +chr1 24391621 24391636 SIX2_MA1119.1 7.196985813164896 + +chr1 25023080 25023095 SIX2_MA1119.1 7.409075181654540 + +chr1 25032138 25032153 SIX2_MA1119.1 8.326509280204988 - +chr1 25676176 25676191 SIX2_MA1119.1 8.516369756425577 + +chr1 26621439 26621454 SIX2_MA1119.1 8.813985664443337 - +chr1 26787603 26787618 SIX2_MA1119.1 9.464853894393213 - +chr1 26864865 26864880 SIX2_MA1119.1 7.277251062977605 - +chr1 27626310 27626325 SIX2_MA1119.1 6.922350314100042 + +chr1 28370196 28370211 SIX2_MA1119.1 10.418528354325613 - +chr1 28370205 28370220 SIX2_MA1119.1 7.302649859739902 + +chr1 28915124 28915139 SIX2_MA1119.1 8.985658117708999 - +chr1 28927152 28927167 SIX2_MA1119.1 7.063578812599403 + +chr1 32992276 32992291 SIX2_MA1119.1 8.884415059539762 + +chr1 32992283 32992298 SIX2_MA1119.1 7.034889589434354 + +chr1 32992907 32992922 SIX2_MA1119.1 9.128135719559165 + +chr1 34530418 34530433 SIX2_MA1119.1 7.052759181605637 - +chr1 35079459 35079474 SIX2_MA1119.1 8.027233830298426 - +chr1 36450726 36450741 SIX2_MA1119.1 7.159129206695536 - +chr1 36463999 36464014 SIX2_MA1119.1 7.101954605403547 - +chr1 38028243 38028258 SIX2_MA1119.1 9.346304392640031 - +chr1 38173436 38173451 SIX2_MA1119.1 7.656235555061761 - +chr1 40232531 40232546 SIX2_MA1119.1 6.994722295371886 - +chr1 40232560 40232575 SIX2_MA1119.1 8.180156453636670 - +chr1 40232673 40232688 SIX2_MA1119.1 11.105281788401610 + +chr1 41868486 41868501 SIX2_MA1119.1 9.088705764863532 + +chr1 41920162 41920177 SIX2_MA1119.1 8.991892786915280 - +chr1 42463206 42463221 SIX2_MA1119.1 7.441183577121349 - +chr1 43221697 43221712 SIX2_MA1119.1 9.134343403131787 + +chr1 44721886 44721901 SIX2_MA1119.1 8.319462255440213 + +chr1 44731154 44731169 SIX2_MA1119.1 7.433716371496091 + +chr1 45304076 45304091 SIX2_MA1119.1 7.136826652417318 + +chr1 45394380 45394395 SIX2_MA1119.1 7.392217082735478 - +chr1 46063069 46063084 SIX2_MA1119.1 7.212686314046534 - +chr1 48498386 48498401 SIX2_MA1119.1 7.338384091022619 + +chr1 48730264 48730279 SIX2_MA1119.1 7.288555393820731 + +chr1 50969681 50969696 SIX2_MA1119.1 7.784950310030991 + +chr1 51268314 51268329 SIX2_MA1119.1 7.160780651715893 + +chr1 51284807 51284822 SIX2_MA1119.1 9.881382844294247 - +chr1 51518520 51518535 SIX2_MA1119.1 10.416725046353120 + +chr1 51569654 51569669 SIX2_MA1119.1 10.156931929816464 + +chr1 51879079 51879094 SIX2_MA1119.1 7.094957377043979 + +chr1 52365829 52365844 SIX2_MA1119.1 8.464267986035795 - +chr1 54376677 54376692 SIX2_MA1119.1 6.978556398592879 - +chr1 56045220 56045235 SIX2_MA1119.1 7.197155451197831 + +chr1 56045331 56045346 SIX2_MA1119.1 9.242228953151464 + +chr1 56330500 56330515 SIX2_MA1119.1 7.811222158449792 - +chr1 58546334 58546349 SIX2_MA1119.1 6.965090040404395 + +chr1 58857872 58857887 SIX2_MA1119.1 7.737831623070463 + +chr1 58903541 58903556 SIX2_MA1119.1 7.272657982200303 - +chr1 59026234 59026249 SIX2_MA1119.1 8.059462019783705 + +chr1 59266937 59266952 SIX2_MA1119.1 7.415255305884149 - +chr1 59697316 59697331 SIX2_MA1119.1 7.925176652324965 + +chr1 59947581 59947596 SIX2_MA1119.1 7.424347071204502 - +chr1 61783014 61783029 SIX2_MA1119.1 9.372575605292047 + +chr1 62613785 62613800 SIX2_MA1119.1 7.215485150524207 - +chr1 62687683 62687698 SIX2_MA1119.1 6.950287107264550 - +chr1 63893227 63893242 SIX2_MA1119.1 8.597881688271356 + +chr1 64744968 64744983 SIX2_MA1119.1 9.482672607384011 - +chr1 65812020 65812035 SIX2_MA1119.1 7.815999879554128 - +chr1 66276134 66276149 SIX2_MA1119.1 7.889988972535531 - +chr1 66282459 66282474 SIX2_MA1119.1 9.238529287213170 - +chr1 66365082 66365097 SIX2_MA1119.1 11.524969745287104 - +chr1 66380521 66380536 SIX2_MA1119.1 7.439888855693484 + +chr1 66380685 66380700 SIX2_MA1119.1 8.351295076891226 - +chr1 66396295 66396310 SIX2_MA1119.1 10.346206838771582 - +chr1 66446257 66446272 SIX2_MA1119.1 7.701634112297182 - +chr1 66648856 66648871 SIX2_MA1119.1 8.251288703428555 + +chr1 66758378 66758393 SIX2_MA1119.1 7.456495640296601 - +chr1 67194449 67194464 SIX2_MA1119.1 7.438330085438914 + +chr1 67214612 67214627 SIX2_MA1119.1 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9.297668014513960 + diff --git a/demo/known_tfbs_chr1_hg38/SP8_MA0747.1.bed b/demo/known_tfbs_chr1_hg38/SP8_MA0747.1.bed new file mode 100644 index 0000000..4136e85 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/SP8_MA0747.1.bed @@ -0,0 +1,2157 @@ +chr1 181487 181498 SP8_MA0747.1 8.926505246918815 - +chr1 181535 181546 SP8_MA0747.1 10.098386052471694 - +chr1 181577 181588 SP8_MA0747.1 8.932628876873702 - +chr1 181584 181595 SP8_MA0747.1 7.940989228646932 - +chr1 181585 181596 SP8_MA0747.1 7.940989228646932 - +chr1 181586 181597 SP8_MA0747.1 7.940989228646932 - +chr1 181587 181598 SP8_MA0747.1 7.940989228646932 - +chr1 181588 181599 SP8_MA0747.1 7.940989228646932 - +chr1 181589 181600 SP8_MA0747.1 7.940989228646932 - +chr1 181590 181601 SP8_MA0747.1 9.001860583919466 - +chr1 827540 827551 SP8_MA0747.1 9.053003805866588 - +chr1 1019408 1019419 SP8_MA0747.1 10.887168353657179 - +chr1 1019481 1019492 SP8_MA0747.1 10.510756420560345 - +chr1 1019496 1019507 SP8_MA0747.1 9.053003805866588 - 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7.800686281766795 - +chr1 226870558 226870569 SP8_MA0747.1 8.329878112558644 - +chr1 226870565 226870576 SP8_MA0747.1 7.954393369046901 - +chr1 226870979 226870990 SP8_MA0747.1 7.426331651783548 - +chr1 226939842 226939853 SP8_MA0747.1 7.789785522491686 + +chr1 226939953 226939964 SP8_MA0747.1 8.102675926273232 + +chr1 226940245 226940256 SP8_MA0747.1 8.465217881704250 - +chr1 227563449 227563460 SP8_MA0747.1 7.790359385310767 - +chr1 227563837 227563848 SP8_MA0747.1 8.535747617452481 - +chr1 227728445 227728456 SP8_MA0747.1 7.738859305348534 + +chr1 227728482 227728493 SP8_MA0747.1 7.954393369046901 + +chr1 227728582 227728593 SP8_MA0747.1 8.465217881704250 + +chr1 227728587 227728598 SP8_MA0747.1 8.065072240334047 + +chr1 227735616 227735627 SP8_MA0747.1 7.578084210500411 - +chr1 227788072 227788083 SP8_MA0747.1 9.652580339351548 - +chr1 227788271 227788282 SP8_MA0747.1 10.257483239702360 - +chr1 227788304 227788315 SP8_MA0747.1 7.636735098639321 - +chr1 227788409 227788420 SP8_MA0747.1 8.422893598888576 - +chr1 227788472 227788483 SP8_MA0747.1 8.100153460283975 - +chr1 228037630 228037641 SP8_MA0747.1 7.290834788367725 + +chr1 228037726 228037737 SP8_MA0747.1 7.597965718622563 - +chr1 228082048 228082059 SP8_MA0747.1 8.121699377358837 + +chr1 228082056 228082067 SP8_MA0747.1 7.576912617963171 + +chr1 228082579 228082590 SP8_MA0747.1 10.966231773352057 + +chr1 228082632 228082643 SP8_MA0747.1 7.742725715665857 - +chr1 228083193 228083204 SP8_MA0747.1 7.394591894498732 - +chr1 228109385 228109396 SP8_MA0747.1 8.106585136040735 - +chr1 228109438 228109449 SP8_MA0747.1 10.662948187554179 - +chr1 228140133 228140144 SP8_MA0747.1 7.547816051919940 - +chr1 228140174 228140185 SP8_MA0747.1 7.454357604446862 - +chr1 228140562 228140573 SP8_MA0747.1 7.318917258912980 - +chr1 228165559 228165570 SP8_MA0747.1 8.791147332766780 + +chr1 228165585 228165596 SP8_MA0747.1 8.012060272832301 + +chr1 228165763 228165774 SP8_MA0747.1 7.261944242779060 + +chr1 228166100 228166111 SP8_MA0747.1 9.982355211308267 + +chr1 228166251 228166262 SP8_MA0747.1 8.092210451431036 - +chr1 228213715 228213726 SP8_MA0747.1 8.465217881704250 - +chr1 228213727 228213738 SP8_MA0747.1 8.920693234495962 - +chr1 228407079 228407090 SP8_MA0747.1 10.966231773352057 - +chr1 228407110 228407121 SP8_MA0747.1 10.966231773352057 - +chr1 228407140 228407151 SP8_MA0747.1 7.532249407564102 - +chr1 228459314 228459325 SP8_MA0747.1 7.726446658533911 + +chr1 228463857 228463868 SP8_MA0747.1 7.939378677934796 - +chr1 228487334 228487345 SP8_MA0747.1 8.515228286644144 + +chr1 228487357 228487368 SP8_MA0747.1 8.515228286644144 + +chr1 228635373 228635384 SP8_MA0747.1 9.049802933286941 + +chr1 228635425 228635436 SP8_MA0747.1 8.092210451431036 - +chr1 228635447 228635458 SP8_MA0747.1 7.817755051648140 - +chr1 228635557 228635568 SP8_MA0747.1 7.851731605421785 + +chr1 228646617 228646628 SP8_MA0747.1 7.817755051648140 - +chr1 228646727 228646738 SP8_MA0747.1 7.851731605421785 + +chr1 229035292 229035303 SP8_MA0747.1 7.333394357496713 - +chr1 229271460 229271471 SP8_MA0747.1 7.281079903588664 - +chr1 229342544 229342555 SP8_MA0747.1 9.053003805866588 + +chr1 229342610 229342621 SP8_MA0747.1 10.236043565537063 - +chr1 229342637 229342648 SP8_MA0747.1 10.966231773352057 - +chr1 229342642 229342653 SP8_MA0747.1 7.404346526431715 - +chr1 229558818 229558829 SP8_MA0747.1 7.348997366566079 + +chr1 229559194 229559205 SP8_MA0747.1 7.224205161231907 - +chr1 229625404 229625415 SP8_MA0747.1 8.115714973554217 + +chr1 229625735 229625746 SP8_MA0747.1 8.065072240334047 + +chr1 229625749 229625760 SP8_MA0747.1 8.121699377358837 + diff --git a/demo/known_tfbs_chr1_hg38/SPDEF_MA0686.1.bed b/demo/known_tfbs_chr1_hg38/SPDEF_MA0686.1.bed new file mode 100644 index 0000000..fca9b7b --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/SPDEF_MA0686.1.bed @@ -0,0 +1,118 @@ +chr1 827511 827521 SPDEF_MA0686.1 7.774593130185910 - +chr1 1399542 1399552 SPDEF_MA0686.1 9.213754412383224 + +chr1 1407306 1407316 SPDEF_MA0686.1 8.858030608380535 - +chr1 1407329 1407339 SPDEF_MA0686.1 6.624907781384997 - +chr1 1511918 1511928 SPDEF_MA0686.1 7.101316187546328 + +chr1 1630414 1630424 SPDEF_MA0686.1 6.706835642075209 - +chr1 2643273 2643283 SPDEF_MA0686.1 9.010505828537173 - +chr1 2684245 2684255 SPDEF_MA0686.1 7.263262423780741 - +chr1 3624788 3624798 SPDEF_MA0686.1 6.751051487687132 + +chr1 3747372 3747382 SPDEF_MA0686.1 8.980177678890463 + +chr1 6199349 6199359 SPDEF_MA0686.1 7.734400089321224 + +chr1 6236130 6236140 SPDEF_MA0686.1 8.129700261236533 - +chr1 6490353 6490363 SPDEF_MA0686.1 6.771119041316105 - +chr1 7954020 7954030 SPDEF_MA0686.1 8.121724215160238 - +chr1 7961236 7961246 SPDEF_MA0686.1 11.399096217868406 - +chr1 9539336 9539346 SPDEF_MA0686.1 8.337228885897590 - +chr1 10985695 10985705 SPDEF_MA0686.1 7.243413448709525 + +chr1 11262781 11262791 SPDEF_MA0686.1 10.262091462818727 - +chr1 11262814 11262824 SPDEF_MA0686.1 8.106961578579604 - +chr1 17054152 17054162 SPDEF_MA0686.1 7.630365506176427 - +chr1 18956505 18956515 SPDEF_MA0686.1 7.195874401859300 + +chr1 19477102 19477112 SPDEF_MA0686.1 8.168728552775823 - +chr1 19485535 19485545 SPDEF_MA0686.1 11.753808442183242 - +chr1 19485973 19485983 SPDEF_MA0686.1 8.053487254413470 + +chr1 19711017 19711027 SPDEF_MA0686.1 7.653476257205470 - +chr1 19799615 19799625 SPDEF_MA0686.1 8.463550062909414 - +chr1 20508177 20508187 SPDEF_MA0686.1 8.487815717868070 + +chr1 20661441 20661451 SPDEF_MA0686.1 10.093943306731795 + +chr1 21334329 21334339 SPDEF_MA0686.1 6.820291700472482 + +chr1 22025504 22025514 SPDEF_MA0686.1 8.866278204527687 - +chr1 23540085 23540095 SPDEF_MA0686.1 8.913654610515387 + +chr1 23554912 23554922 SPDEF_MA0686.1 8.129700261236533 - +chr1 24930536 24930546 SPDEF_MA0686.1 7.553195006176662 - +chr1 25232487 25232497 SPDEF_MA0686.1 6.839309986680557 - +chr1 25239885 25239895 SPDEF_MA0686.1 8.099488339990474 + +chr1 25247084 25247094 SPDEF_MA0686.1 8.000580396688891 + +chr1 25338339 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32394194 32394204 SPDEF_MA0686.1 8.107224801001191 - +chr1 33036776 33036786 SPDEF_MA0686.1 6.893787562885272 + +chr1 33182040 33182050 SPDEF_MA0686.1 7.173298360064899 + +chr1 35557432 35557442 SPDEF_MA0686.1 8.130316934188601 + +chr1 37808192 37808202 SPDEF_MA0686.1 7.233790532151677 - +chr1 37990082 37990092 SPDEF_MA0686.1 6.839309986680557 + +chr1 38012717 38012727 SPDEF_MA0686.1 7.371774665798540 - +chr1 38012942 38012952 SPDEF_MA0686.1 8.122727467198819 - +chr1 38475470 38475480 SPDEF_MA0686.1 7.558834222321289 - +chr1 39026784 39026794 SPDEF_MA0686.1 8.463550062909414 - +chr1 39606384 39606394 SPDEF_MA0686.1 8.965686592380688 + +chr1 39738762 39738772 SPDEF_MA0686.1 11.376357535211479 - +chr1 40040032 40040042 SPDEF_MA0686.1 6.751051487687132 + +chr1 40040709 40040719 SPDEF_MA0686.1 6.824547350099922 + +chr1 40373710 40373720 SPDEF_MA0686.1 7.195033790683246 + +chr1 40477200 40477210 SPDEF_MA0686.1 8.355292621003727 - +chr1 40709189 40709199 SPDEF_MA0686.1 6.751051487687132 + 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7.400975007356744 + +chr1 53238598 53238608 SPDEF_MA0686.1 6.824547350099922 + +chr1 55215410 55215420 SPDEF_MA0686.1 7.233790532151677 + +chr1 58699749 58699759 SPDEF_MA0686.1 7.263262423780741 - +chr1 58700029 58700039 SPDEF_MA0686.1 6.706835642075209 - +chr1 62784062 62784072 SPDEF_MA0686.1 8.469703230502938 + +chr1 63124918 63124928 SPDEF_MA0686.1 10.802894060852960 - +chr1 63523293 63523303 SPDEF_MA0686.1 8.477439691513656 - +chr1 64966002 64966012 SPDEF_MA0686.1 8.056204398823743 + +chr1 65067800 65067810 SPDEF_MA0686.1 9.591205319354987 - +chr1 65254565 65254575 SPDEF_MA0686.1 6.724899377181345 + +chr1 65420691 65420701 SPDEF_MA0686.1 7.583361168560843 + +chr1 65688079 65688089 SPDEF_MA0686.1 8.913654610515387 + +chr1 66335987 66335997 SPDEF_MA0686.1 7.175003924787317 + +chr1 66930324 66930334 SPDEF_MA0686.1 12.256546429560050 - +chr1 67430433 67430443 SPDEF_MA0686.1 10.632306353331192 - +chr1 67736090 67736100 SPDEF_MA0686.1 8.056204398823743 + +chr1 75786669 75786679 SPDEF_MA0686.1 8.099488339990474 - +chr1 76154879 76154889 SPDEF_MA0686.1 9.236493095040151 - +chr1 76425350 76425360 SPDEF_MA0686.1 8.410916623138579 - +chr1 77683158 77683168 SPDEF_MA0686.1 8.007031739667367 - +chr1 79193317 79193327 SPDEF_MA0686.1 7.320243128484654 - +chr1 80641203 80641213 SPDEF_MA0686.1 8.781131513651044 + +chr1 81549123 81549133 SPDEF_MA0686.1 9.283869501027851 + +chr1 84078574 84078584 SPDEF_MA0686.1 7.356757229105795 + +chr1 84506206 84506216 SPDEF_MA0686.1 6.901640252296639 - +chr1 85259683 85259693 SPDEF_MA0686.1 7.630365506176427 + +chr1 86395917 86395927 SPDEF_MA0686.1 8.825427034505628 - +chr1 86914576 86914586 SPDEF_MA0686.1 7.101316187546328 + +chr1 87449485 87449495 SPDEF_MA0686.1 7.966965243126131 + +chr1 88180740 88180750 SPDEF_MA0686.1 7.156891437422184 - +chr1 88992846 88992856 SPDEF_MA0686.1 8.987150472928176 + diff --git a/demo/known_tfbs_chr1_hg38/SPI1_MA0080.4.bed b/demo/known_tfbs_chr1_hg38/SPI1_MA0080.4.bed new file mode 100644 index 0000000..3f744ca --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/SPI1_MA0080.4.bed @@ -0,0 +1,938 @@ +chr1 827464 827477 SPI1_MA0080.4 0.582063278486827 + +chr1 827763 827776 SPI1_MA0080.4 0.669321604389240 - +chr1 1375567 1375580 SPI1_MA0080.4 2.343034893894526 + +chr1 1659001 1659014 SPI1_MA0080.4 6.452412186344253 - +chr1 2290901 2290914 SPI1_MA0080.4 4.230639941328104 - +chr1 2585551 2585564 SPI1_MA0080.4 2.472823967010645 - +chr1 2586067 2586080 SPI1_MA0080.4 0.969926385287152 - +chr1 3624785 3624798 SPI1_MA0080.4 6.998538900349857 + +chr1 3665556 3665569 SPI1_MA0080.4 6.297031051032609 + +chr1 3677683 3677696 SPI1_MA0080.4 5.076699106825638 - +chr1 8182961 8182974 SPI1_MA0080.4 8.894794162075950 + +chr1 8283412 8283425 SPI1_MA0080.4 5.833683029230678 + +chr1 8427653 8427666 SPI1_MA0080.4 11.970362791970079 + +chr1 8629965 8629978 SPI1_MA0080.4 2.509412097752103 + +chr1 8629998 8630011 SPI1_MA0080.4 2.946608776320459 - +chr1 9037619 9037632 SPI1_MA0080.4 6.272963684477332 - +chr1 9069711 9069724 SPI1_MA0080.4 8.892761612325174 - +chr1 9181874 9181887 SPI1_MA0080.4 0.592302388659756 - +chr1 9950791 9950804 SPI1_MA0080.4 1.946522949159887 + +chr1 10494899 10494912 SPI1_MA0080.4 4.105970021602995 + +chr1 10965331 10965344 SPI1_MA0080.4 10.681001760570677 + +chr1 10985937 10985950 SPI1_MA0080.4 1.077131400283889 + +chr1 11012459 11012472 SPI1_MA0080.4 2.159162541032158 - +chr1 11273460 11273473 SPI1_MA0080.4 1.053475121688755 - +chr1 11806251 11806264 SPI1_MA0080.4 2.704406351239300 + +chr1 11908051 11908064 SPI1_MA0080.4 1.490553552488952 + +chr1 11926386 11926399 SPI1_MA0080.4 4.004185443733355 - +chr1 13713260 13713273 SPI1_MA0080.4 3.579524856594247 - +chr1 13749395 13749408 SPI1_MA0080.4 0.601323740705628 + +chr1 14599944 14599957 SPI1_MA0080.4 3.517027875232396 + +chr1 15409895 15409908 SPI1_MA0080.4 0.935128666119702 + +chr1 15697074 15697087 SPI1_MA0080.4 6.005753331715958 + +chr1 15834676 15834689 SPI1_MA0080.4 2.362353629150100 - +chr1 16728545 16728558 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2.308274379061549 - +chr1 210400398 210400411 SPI1_MA0080.4 1.204793983288058 - +chr1 211260975 211260988 SPI1_MA0080.4 2.621362459377667 - +chr1 211383228 211383241 SPI1_MA0080.4 1.243673346268640 - +chr1 211579278 211579291 SPI1_MA0080.4 0.773500259099706 - +chr1 211607052 211607065 SPI1_MA0080.4 5.934207263038848 + +chr1 212186759 212186772 SPI1_MA0080.4 2.369022688458480 + +chr1 212665667 212665680 SPI1_MA0080.4 5.593073454466222 - +chr1 212678910 212678923 SPI1_MA0080.4 4.002646750929712 + +chr1 212683043 212683056 SPI1_MA0080.4 1.255556242368777 - +chr1 212794699 212794712 SPI1_MA0080.4 4.717954949111277 + +chr1 212794935 212794948 SPI1_MA0080.4 6.998538900349857 + +chr1 212833964 212833977 SPI1_MA0080.4 9.625492700959345 - +chr1 213015491 213015504 SPI1_MA0080.4 0.935128666119700 - +chr1 213103874 213103887 SPI1_MA0080.4 1.377888650141911 + +chr1 213623128 213623141 SPI1_MA0080.4 2.632346448097529 - +chr1 214427792 214427805 SPI1_MA0080.4 2.347721507969075 + +chr1 216006132 216006145 SPI1_MA0080.4 2.833151713141962 - +chr1 216702375 216702388 SPI1_MA0080.4 1.064180189946382 - +chr1 217027572 217027585 SPI1_MA0080.4 2.771569003979446 + +chr1 217494974 217494987 SPI1_MA0080.4 1.693814144930442 + +chr1 217495215 217495228 SPI1_MA0080.4 2.209820374697162 + +chr1 217495462 217495475 SPI1_MA0080.4 10.275852354123678 + +chr1 217620959 217620972 SPI1_MA0080.4 0.811475270742453 + +chr1 217631054 217631067 SPI1_MA0080.4 2.624383756373377 - +chr1 218164529 218164542 SPI1_MA0080.4 0.878786264296002 + +chr1 218285251 218285264 SPI1_MA0080.4 7.339146100219709 + +chr1 219090864 219090877 SPI1_MA0080.4 12.248400304768101 + +chr1 219174165 219174178 SPI1_MA0080.4 6.410117723990133 - +chr1 219188496 219188509 SPI1_MA0080.4 4.321072859435360 + +chr1 219188566 219188579 SPI1_MA0080.4 4.886901199500553 + +chr1 219189270 219189283 SPI1_MA0080.4 6.371233732638277 + +chr1 219416674 219416687 SPI1_MA0080.4 1.133141596265347 - +chr1 219460970 219460983 SPI1_MA0080.4 0.735058296861690 + +chr1 219460983 219460996 SPI1_MA0080.4 2.493524637996877 + +chr1 219461000 219461013 SPI1_MA0080.4 8.121880408401683 + +chr1 219476591 219476604 SPI1_MA0080.4 4.659371486079205 + +chr1 219582846 219582859 SPI1_MA0080.4 3.268828134991441 - +chr1 219988623 219988636 SPI1_MA0080.4 1.658696950275915 - +chr1 220089118 220089131 SPI1_MA0080.4 0.762986243039781 + +chr1 220089167 220089180 SPI1_MA0080.4 2.127239139071306 + +chr1 220089871 220089884 SPI1_MA0080.4 1.313744300557435 - +chr1 220090010 220090023 SPI1_MA0080.4 5.438234671894503 + +chr1 220219987 220220000 SPI1_MA0080.4 2.800054649795249 - +chr1 220220565 220220578 SPI1_MA0080.4 1.437594287716263 + +chr1 220272270 220272283 SPI1_MA0080.4 10.650167481703653 + +chr1 220272453 220272466 SPI1_MA0080.4 2.336443273595888 + +chr1 220337295 220337308 SPI1_MA0080.4 11.301251831878353 + +chr1 220655680 220655693 SPI1_MA0080.4 0.828615916662204 - +chr1 220711580 220711593 SPI1_MA0080.4 11.215305167879054 + +chr1 220733186 220733199 SPI1_MA0080.4 0.660538889162939 - +chr1 220733315 220733328 SPI1_MA0080.4 1.492766136456915 + +chr1 220770382 220770395 SPI1_MA0080.4 2.404395276497392 + +chr1 221046434 221046447 SPI1_MA0080.4 5.770640519688527 + +chr1 221069438 221069451 SPI1_MA0080.4 0.707887268730650 + +chr1 221069551 221069564 SPI1_MA0080.4 10.404114732307622 + +chr1 221069564 221069577 SPI1_MA0080.4 7.247791985444236 + +chr1 221070060 221070073 SPI1_MA0080.4 5.021505862276369 + +chr1 221070209 221070222 SPI1_MA0080.4 2.435783819220246 + +chr1 221157528 221157541 SPI1_MA0080.4 3.965800163294920 - +chr1 221167039 221167052 SPI1_MA0080.4 9.288435702249958 + +chr1 221167207 221167220 SPI1_MA0080.4 2.496280829462833 - +chr1 221439476 221439489 SPI1_MA0080.4 3.243192966998707 - +chr1 221708296 221708309 SPI1_MA0080.4 1.578053046122140 - +chr1 221712510 221712523 SPI1_MA0080.4 2.851353864527908 + +chr1 221741599 221741612 SPI1_MA0080.4 4.213412015781844 - +chr1 221754845 221754858 SPI1_MA0080.4 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diff --git a/demo/known_tfbs_chr1_hg38/Shox2_MA0720.1.bed b/demo/known_tfbs_chr1_hg38/Shox2_MA0720.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/Six3_MA0631.1.bed b/demo/known_tfbs_chr1_hg38/Six3_MA0631.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/Smad4_MA1153.1.bed b/demo/known_tfbs_chr1_hg38/Smad4_MA1153.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/Sox11_MA0869.1.bed b/demo/known_tfbs_chr1_hg38/Sox11_MA0869.1.bed new file mode 100644 index 0000000..46076b0 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/Sox11_MA0869.1.bed @@ -0,0 +1,227 @@ +chr1 790510 790524 Sox11_MA0869.1 -21.987998836886270 - +chr1 6359657 6359671 Sox11_MA0869.1 -24.012905398686467 + +chr1 6861763 6861777 Sox11_MA0869.1 -22.049034722296899 + +chr1 8604332 8604346 Sox11_MA0869.1 -29.154686484989458 - +chr1 8629577 8629591 Sox11_MA0869.1 -22.607870633642150 + +chr1 9942718 9942732 Sox11_MA0869.1 -17.055950452320840 - +chr1 10940207 10940221 Sox11_MA0869.1 -29.161265455546459 - +chr1 10985899 10985913 Sox11_MA0869.1 -24.278563160938717 - +chr1 10986179 10986193 Sox11_MA0869.1 -18.011458820435848 + +chr1 11908395 11908409 Sox11_MA0869.1 -25.668121142854783 + +chr1 12435899 12435913 Sox11_MA0869.1 -2.668536450490117 - +chr1 16441116 16441130 Sox11_MA0869.1 -29.237861753912043 - +chr1 16728657 16728671 Sox11_MA0869.1 -29.568103379641325 - +chr1 25032293 25032307 Sox11_MA0869.1 -19.257989953402927 + +chr1 25430705 25430719 Sox11_MA0869.1 -24.019484369243468 - +chr1 26787508 26787522 Sox11_MA0869.1 -29.298897639322671 - +chr1 27830996 27831010 Sox11_MA0869.1 -20.232014175127883 - +chr1 29182267 29182281 Sox11_MA0869.1 -28.757825135823488 - +chr1 32222625 32222639 Sox11_MA0869.1 -12.723110985108569 - +chr1 35506424 35506438 Sox11_MA0869.1 -29.040057576779265 + +chr1 35641713 35641727 Sox11_MA0869.1 -28.324873417597708 - +chr1 36023629 36023643 Sox11_MA0869.1 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Sox11_MA0869.1 -29.484928110718741 - +chr1 66282951 66282965 Sox11_MA0869.1 -28.120483994609916 - +chr1 66335745 66335759 Sox11_MA0869.1 -19.419788481105606 - +chr1 66336298 66336312 Sox11_MA0869.1 -13.678619353223583 + +chr1 66374434 66374448 Sox11_MA0869.1 -29.491507081275763 - +chr1 66396529 66396543 Sox11_MA0869.1 -29.209274640319961 + +chr1 66648987 66649001 Sox11_MA0869.1 -2.507001825922278 - +chr1 67340044 67340058 Sox11_MA0869.1 -23.730672957730690 + +chr1 68180834 68180848 Sox11_MA0869.1 -18.335121475608130 - +chr1 69737519 69737533 Sox11_MA0869.1 -24.278563160938717 - +chr1 70411254 70411268 Sox11_MA0869.1 -6.621165667700743 + +chr1 70411711 70411725 Sox11_MA0869.1 -4.550461274466324 - +chr1 70517950 70517964 Sox11_MA0869.1 -23.935056105420472 + +chr1 72433772 72433786 Sox11_MA0869.1 -16.469664122117550 + +chr1 74653209 74653223 Sox11_MA0869.1 -24.019484369243468 - +chr1 75985830 75985844 Sox11_MA0869.1 -23.728461604391406 - +chr1 76154344 76154358 Sox11_MA0869.1 -18.558037572899760 - +chr1 77672466 77672480 Sox11_MA0869.1 -23.912136481096397 + +chr1 77979793 77979807 Sox11_MA0869.1 -22.049034722296899 - +chr1 78371290 78371304 Sox11_MA0869.1 -25.334595442193944 - +chr1 78651220 78651234 Sox11_MA0869.1 -19.620876733169943 - +chr1 78651266 78651280 Sox11_MA0869.1 -23.581894855367114 - +chr1 79260185 79260199 Sox11_MA0869.1 -23.581894855367114 - +chr1 79469158 79469172 Sox11_MA0869.1 -19.675333648023567 - +chr1 79694644 79694658 Sox11_MA0869.1 -23.728461604391406 + +chr1 79742403 79742417 Sox11_MA0869.1 -29.237861753912043 + +chr1 81549370 81549384 Sox11_MA0869.1 -24.702485826116366 - +chr1 81598051 81598065 Sox11_MA0869.1 -8.230583580434836 + +chr1 81598452 81598466 Sox11_MA0869.1 -25.337879517125501 - +chr1 84090871 84090885 Sox11_MA0869.1 -27.705001620841827 + +chr1 84152796 84152810 Sox11_MA0869.1 -25.398915402536133 - +chr1 84271624 84271638 Sox11_MA0869.1 -29.157981380614903 - +chr1 84480132 84480146 Sox11_MA0869.1 -26.092299633176175 - 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Sox11_MA0869.1 -25.398915402536126 - +chr1 90358373 90358387 Sox11_MA0869.1 -27.008572044422067 - +chr1 92537432 92537446 Sox11_MA0869.1 -22.042455751739894 + +chr1 92537810 92537824 Sox11_MA0869.1 -25.337879517125501 + +chr1 92537841 92537855 Sox11_MA0869.1 -29.154686484989458 - +chr1 92537933 92537947 Sox11_MA0869.1 -19.951118358899226 - +chr1 92563855 92563869 Sox11_MA0869.1 -19.423072556037170 + +chr1 93681053 93681067 Sox11_MA0869.1 -25.887981073672812 + +chr1 94411589 94411603 Sox11_MA0869.1 -24.702485826116366 - +chr1 97461807 97461821 Sox11_MA0869.1 -23.323054792823715 + +chr1 99218867 99218881 Sox11_MA0869.1 -18.827243313218421 + +chr1 99228310 99228324 Sox11_MA0869.1 -27.069607929832692 - +chr1 99752149 99752163 Sox11_MA0869.1 -25.398915402536133 - +chr1 99784950 99784964 Sox11_MA0869.1 -25.337879517125501 + +chr1 100720018 100720032 Sox11_MA0869.1 -29.736487153199025 - +chr1 101051971 101051985 Sox11_MA0869.1 -29.205990565388401 - +chr1 101380119 101380133 Sox11_MA0869.1 -21.987998836886270 - +chr1 101438426 101438440 Sox11_MA0869.1 -25.398915402536126 - +chr1 101444537 101444551 Sox11_MA0869.1 -17.379613107493117 + +chr1 101567858 101567872 Sox11_MA0869.1 -21.645783294970141 + +chr1 104593369 104593383 Sox11_MA0869.1 -28.749034811927210 - +chr1 104747306 104747320 Sox11_MA0869.1 -18.299197510356354 - +chr1 104987308 104987322 Sox11_MA0869.1 -22.049034722296895 + +chr1 107451258 107451272 Sox11_MA0869.1 -28.489956020231951 - +chr1 107934715 107934729 Sox11_MA0869.1 -29.161265455546467 - +chr1 107950342 107950356 Sox11_MA0869.1 -22.938112259371433 + +chr1 109076215 109076229 Sox11_MA0869.1 -21.911441057222390 - +chr1 109283630 109283644 Sox11_MA0869.1 -11.388055029171134 + +chr1 109283630 109283644 Sox11_MA0869.1 -29.154697305683339 - +chr1 110872978 110872992 Sox11_MA0869.1 -27.628443841177948 + +chr1 111220020 111220034 Sox11_MA0869.1 -17.382908003118562 - +chr1 111449508 111449522 Sox11_MA0869.1 -27.362786078925694 - +chr1 113784223 113784237 Sox11_MA0869.1 -25.337879517125501 + +chr1 114758171 114758185 Sox11_MA0869.1 -18.561321647831317 + +chr1 116515250 116515264 Sox11_MA0869.1 -27.628443841177948 + +chr1 116769251 116769265 Sox11_MA0869.1 -24.019484369243472 + +chr1 116827400 116827414 Sox11_MA0869.1 -23.737251928287691 - +chr1 118915013 118915027 Sox11_MA0869.1 -18.191849622209283 - +chr1 119324134 119324148 Sox11_MA0869.1 -3.364966026909876 + +chr1 119565588 119565602 Sox11_MA0869.1 -29.161265455546474 + +chr1 119675596 119675610 Sox11_MA0869.1 -19.423072556037166 - +chr1 120534710 120534724 Sox11_MA0869.1 -22.076523659856633 + +chr1 121516572 121516586 Sox11_MA0869.1 -27.705001620841827 + +chr1 125179362 125179376 Sox11_MA0869.1 -24.641449940705741 + +chr1 143214813 143214827 Sox11_MA0869.1 -24.641449940705741 - +chr1 143222380 143222394 Sox11_MA0869.1 -28.120483994609916 + +chr1 143239379 143239393 Sox11_MA0869.1 -21.987998836886270 - +chr1 143251857 143251871 Sox11_MA0869.1 -21.987998836886270 + +chr1 149928081 149928095 Sox11_MA0869.1 -12.844318863875761 + +chr1 150234982 150234996 Sox11_MA0869.1 -29.154686484989458 + +chr1 150269210 150269224 Sox11_MA0869.1 -3.915067583457189 + +chr1 151156828 151156842 Sox11_MA0869.1 -29.040057576779265 + +chr1 151909282 151909296 Sox11_MA0869.1 -26.999893023860665 + +chr1 151984550 151984564 Sox11_MA0869.1 -23.847816520754211 - +chr1 152908211 152908225 Sox11_MA0869.1 -23.728461604391406 + +chr1 154157981 154157995 Sox11_MA0869.1 -29.154686484989458 + +chr1 155946688 155946702 Sox11_MA0869.1 -29.491507081275749 + +chr1 156054635 156054649 Sox11_MA0869.1 -28.123768069541473 + +chr1 156226175 156226189 Sox11_MA0869.1 -23.728461604391406 + +chr1 156456890 156456904 Sox11_MA0869.1 -29.491507081275756 + +chr1 156488710 156488724 Sox11_MA0869.1 -25.949016959083441 + +chr1 156767301 156767315 Sox11_MA0869.1 -23.996330719982943 - +chr1 157512144 157512158 Sox11_MA0869.1 -22.772953236276393 - +chr1 158150143 158150157 Sox11_MA0869.1 -29.040057576779265 + +chr1 158371815 158371829 Sox11_MA0869.1 -25.945732884151884 - +chr1 158830917 158830931 Sox11_MA0869.1 -18.211474350907913 + +chr1 159009744 159009758 Sox11_MA0869.1 -27.628443841177948 - +chr1 159012939 159012953 Sox11_MA0869.1 -19.423072556037166 + +chr1 160284895 160284909 Sox11_MA0869.1 -26.672935473062939 - +chr1 160285217 160285231 Sox11_MA0869.1 -20.008870169378294 + +chr1 160285217 160285231 Sox11_MA0869.1 -16.328747863409781 - +chr1 160454390 160454404 Sox11_MA0869.1 -20.378580924152175 + +chr1 160522929 160522943 Sox11_MA0869.1 -28.879033014590682 - +chr1 160522951 160522965 Sox11_MA0869.1 -23.581894855367114 + +chr1 160797913 160797927 Sox11_MA0869.1 -29.729908182642024 - +chr1 161118147 161118161 Sox11_MA0869.1 -27.003177098792221 - +chr1 161186087 161186101 Sox11_MA0869.1 -18.299197510356354 - +chr1 161422056 161422070 Sox11_MA0869.1 -29.491507081275749 + +chr1 161706811 161706825 Sox11_MA0869.1 -27.069607929832692 - +chr1 161707220 161707234 Sox11_MA0869.1 -29.157981380614910 + +chr1 162498242 162498256 Sox11_MA0869.1 -4.969227723165972 + +chr1 162701584 162701598 Sox11_MA0869.1 -29.161265455546459 - +chr1 167676356 167676370 Sox11_MA0869.1 -29.154697305683339 + +chr1 167676356 167676370 Sox11_MA0869.1 -27.766037506252452 - +chr1 167676492 167676506 Sox11_MA0869.1 -15.928780511014581 - +chr1 168145809 168145823 Sox11_MA0869.1 -26.645446535503201 - +chr1 168467530 168467544 Sox11_MA0869.1 -10.267464058421883 + +chr1 169012785 169012799 Sox11_MA0869.1 -19.257989953402927 - +chr1 169044648 169044662 Sox11_MA0869.1 -25.949016959083448 + +chr1 169161937 169161951 Sox11_MA0869.1 -29.298897639322671 - +chr1 169594632 169594646 Sox11_MA0869.1 -12.841034788944201 - +chr1 169915684 169915698 Sox11_MA0869.1 -18.302481585287914 + +chr1 170067431 170067445 Sox11_MA0869.1 -27.069607929832692 - +chr1 170853424 170853438 Sox11_MA0869.1 -29.491507081275749 + +chr1 171188815 171188829 Sox11_MA0869.1 -25.140075339992720 - +chr1 171251940 171251954 Sox11_MA0869.1 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Sox11_MA0869.1 -29.568103379641332 - +chr1 181099720 181099734 Sox11_MA0869.1 -29.161265455546474 + +chr1 182428136 182428150 Sox11_MA0869.1 -22.049034722296902 - +chr1 182604455 182604469 Sox11_MA0869.1 -27.955401391975673 + +chr1 182677811 182677825 Sox11_MA0869.1 -23.912136481096397 - +chr1 183481215 183481229 Sox11_MA0869.1 -19.681912618580572 + +chr1 183805294 183805308 Sox11_MA0869.1 -17.055950452320840 - +chr1 183842620 183842634 Sox11_MA0869.1 -27.793526443812191 + +chr1 183842987 183843001 Sox11_MA0869.1 -12.844318863875761 + +chr1 184755095 184755109 Sox11_MA0869.1 -24.974992737358484 + +chr1 184892517 184892531 Sox11_MA0869.1 -29.157981380614896 + +chr1 185560364 185560378 Sox11_MA0869.1 -29.154686484989458 - +chr1 186178831 186178845 Sox11_MA0869.1 -29.040057576779265 - diff --git a/demo/known_tfbs_chr1_hg38/Sox17_MA0078.1.bed b/demo/known_tfbs_chr1_hg38/Sox17_MA0078.1.bed new file mode 100644 index 0000000..ae49b76 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/Sox17_MA0078.1.bed @@ -0,0 +1,117 @@ +chr1 6701762 6701770 Sox17_MA0078.1 8.927117383480336 + +chr1 7994285 7994293 Sox17_MA0078.1 8.396490161827888 + +chr1 8817508 8817516 Sox17_MA0078.1 8.608664504632230 - +chr1 9037760 9037768 Sox17_MA0078.1 8.927117383480338 - +chr1 12040789 12040797 Sox17_MA0078.1 8.608664504632229 + +chr1 15231907 15231915 Sox17_MA0078.1 8.145176527195256 - +chr1 15835955 15835963 Sox17_MA0078.1 8.927117383480338 - +chr1 17141866 17141874 Sox17_MA0078.1 7.991026442603790 - +chr1 17438549 17438557 Sox17_MA0078.1 8.078037282979780 - +chr1 19477089 19477097 Sox17_MA0078.1 8.521653664256240 - +chr1 21294854 21294862 Sox17_MA0078.1 8.608664504632229 + +chr1 21866143 21866151 Sox17_MA0078.1 8.521653664256240 - +chr1 23168854 23168862 Sox17_MA0078.1 8.927117383480338 - +chr1 25906040 25906048 Sox17_MA0078.1 8.608664504632230 - +chr1 26865791 26865799 Sox17_MA0078.1 8.396490161827888 - +chr1 28200089 28200097 Sox17_MA0078.1 7.991026442603790 + +chr1 28927198 28927206 Sox17_MA0078.1 8.233971591806387 + +chr1 32981143 32981151 Sox17_MA0078.1 8.675803748847704 + +chr1 37860306 37860314 Sox17_MA0078.1 8.608664504632229 + +chr1 38474921 38474929 Sox17_MA0078.1 8.396490161827888 - +chr1 39026759 39026767 Sox17_MA0078.1 8.608664504632229 + +chr1 41955819 41955827 Sox17_MA0078.1 8.145176527195256 + +chr1 44739555 44739563 Sox17_MA0078.1 8.927117383480336 + +chr1 45011699 45011707 Sox17_MA0078.1 8.203200785408132 - +chr1 45491333 45491341 Sox17_MA0078.1 8.078037282979780 - +chr1 45550838 45550846 Sox17_MA0078.1 8.396490161827888 + +chr1 46442740 46442748 Sox17_MA0078.1 8.203200785408130 + +chr1 47351464 47351472 Sox17_MA0078.1 8.078037282979780 + +chr1 50724830 50724838 Sox17_MA0078.1 8.078037282979780 + +chr1 51285346 51285354 Sox17_MA0078.1 8.927117383480336 + +chr1 51501365 51501373 Sox17_MA0078.1 8.357350869999596 + +chr1 54376910 54376918 Sox17_MA0078.1 8.675803748847706 - +chr1 54801422 54801430 Sox17_MA0078.1 8.608664504632229 + +chr1 56516654 56516662 Sox17_MA0078.1 7.991026442603790 - +chr1 59007858 59007866 Sox17_MA0078.1 8.078037282979780 - +chr1 59020218 59020226 Sox17_MA0078.1 8.608664504632229 + +chr1 59947665 59947673 Sox17_MA0078.1 8.927117383480336 + +chr1 60978644 60978652 Sox17_MA0078.1 8.927117383480336 + +chr1 63125317 63125325 Sox17_MA0078.1 8.927117383480338 - +chr1 64895587 64895595 Sox17_MA0078.1 8.078037282979780 - +chr1 64960939 64960947 Sox17_MA0078.1 8.357350869999598 - +chr1 64987745 64987753 Sox17_MA0078.1 8.521653664256240 - +chr1 65459588 65459596 Sox17_MA0078.1 8.357350869999596 + +chr1 66350224 66350232 Sox17_MA0078.1 7.991026442603790 + +chr1 66351761 66351769 Sox17_MA0078.1 8.078037282979780 + +chr1 66364811 66364819 Sox17_MA0078.1 8.675803748847706 - +chr1 66365017 66365025 Sox17_MA0078.1 8.145176527195256 + +chr1 66374482 66374490 Sox17_MA0078.1 8.078037282979780 - +chr1 66380744 66380752 Sox17_MA0078.1 8.233971591806387 - +chr1 66381080 66381088 Sox17_MA0078.1 8.608664504632230 - +chr1 66397076 66397084 Sox17_MA0078.1 8.233971591806387 + +chr1 66446153 66446161 Sox17_MA0078.1 7.991026442603790 + +chr1 68347740 68347748 Sox17_MA0078.1 8.078037282979780 - +chr1 71081594 71081602 Sox17_MA0078.1 8.203200785408130 + +chr1 72433172 72433180 Sox17_MA0078.1 8.078037282979780 + +chr1 73573331 73573339 Sox17_MA0078.1 8.145176527195256 + +chr1 74811849 74811857 Sox17_MA0078.1 7.991026442603790 + +chr1 74858158 74858166 Sox17_MA0078.1 8.203200785408132 - +chr1 75233527 75233535 Sox17_MA0078.1 8.396490161827888 + +chr1 75614747 75614755 Sox17_MA0078.1 8.078037282979780 + +chr1 75724755 75724763 Sox17_MA0078.1 7.982657957173755 + +chr1 75796543 75796551 Sox17_MA0078.1 8.396490161827888 + +chr1 77927820 77927828 Sox17_MA0078.1 7.991026442603790 - +chr1 78277449 78277457 Sox17_MA0078.1 8.927117383480336 + +chr1 78281769 78281777 Sox17_MA0078.1 7.991026442603790 + +chr1 79519545 79519553 Sox17_MA0078.1 8.396490161827888 - +chr1 79711415 79711423 Sox17_MA0078.1 8.927117383480338 - +chr1 81437810 81437818 Sox17_MA0078.1 7.982657957173755 - +chr1 81801157 81801165 Sox17_MA0078.1 8.927117383480338 - +chr1 84988840 84988848 Sox17_MA0078.1 7.991026442603790 - +chr1 85335176 85335184 Sox17_MA0078.1 8.145176527195256 - +chr1 86704120 86704128 Sox17_MA0078.1 8.203200785408130 + +chr1 88401228 88401236 Sox17_MA0078.1 8.078037282979780 - +chr1 89022339 89022347 Sox17_MA0078.1 8.608664504632230 - +chr1 89022375 89022383 Sox17_MA0078.1 8.203200785408132 - +chr1 89041205 89041213 Sox17_MA0078.1 8.078037282979780 - +chr1 89524853 89524861 Sox17_MA0078.1 8.078037282979780 - +chr1 89693402 89693410 Sox17_MA0078.1 8.608664504632230 - +chr1 89855904 89855912 Sox17_MA0078.1 8.078037282979780 - +chr1 91166290 91166298 Sox17_MA0078.1 8.078037282979780 + +chr1 92485076 92485084 Sox17_MA0078.1 8.078037282979780 + +chr1 92962426 92962434 Sox17_MA0078.1 8.927117383480338 - +chr1 93909451 93909459 Sox17_MA0078.1 8.521653664256240 - +chr1 94411415 94411423 Sox17_MA0078.1 8.396490161827888 - +chr1 94721361 94721369 Sox17_MA0078.1 7.982657957173755 + +chr1 97462152 97462160 Sox17_MA0078.1 8.078037282979780 - +chr1 99180571 99180579 Sox17_MA0078.1 7.982657957173755 + +chr1 100895487 100895495 Sox17_MA0078.1 8.396490161827888 + +chr1 101293710 101293718 Sox17_MA0078.1 8.396490161827888 + +chr1 101309985 101309993 Sox17_MA0078.1 8.396490161827888 + +chr1 101364224 101364232 Sox17_MA0078.1 8.078037282979780 + +chr1 102434710 102434718 Sox17_MA0078.1 8.608664504632229 + +chr1 103327193 103327201 Sox17_MA0078.1 8.608664504632229 + +chr1 103515126 103515134 Sox17_MA0078.1 8.521653664256240 - +chr1 104468376 104468384 Sox17_MA0078.1 8.078037282979780 + +chr1 105137592 105137600 Sox17_MA0078.1 8.608664504632229 + +chr1 106727384 106727392 Sox17_MA0078.1 8.145176527195256 + +chr1 106996171 106996179 Sox17_MA0078.1 8.396490161827888 + +chr1 107451517 107451525 Sox17_MA0078.1 8.927117383480336 + +chr1 107777175 107777183 Sox17_MA0078.1 8.078037282979780 - +chr1 107949864 107949872 Sox17_MA0078.1 8.078037282979780 + +chr1 109532898 109532906 Sox17_MA0078.1 8.145176527195256 + +chr1 111601161 111601169 Sox17_MA0078.1 8.357350869999598 - +chr1 112715622 112715630 Sox17_MA0078.1 8.078037282979780 + +chr1 112955573 112955581 Sox17_MA0078.1 8.203200785408132 - +chr1 116769240 116769248 Sox17_MA0078.1 8.396490161827888 + +chr1 118136880 118136888 Sox17_MA0078.1 8.357350869999598 - +chr1 120534969 120534977 Sox17_MA0078.1 8.927117383480338 - +chr1 120850913 120850921 Sox17_MA0078.1 8.078037282979780 - +chr1 125176982 125176990 Sox17_MA0078.1 8.078037282979780 - +chr1 125181259 125181267 Sox17_MA0078.1 8.078037282979780 - +chr1 145845414 145845422 Sox17_MA0078.1 8.521653664256238 + +chr1 147600152 147600160 Sox17_MA0078.1 8.608664504632230 - +chr1 153842188 153842196 Sox17_MA0078.1 8.396490161827888 + +chr1 155946524 155946532 Sox17_MA0078.1 8.927117383480338 - +chr1 156456970 156456978 Sox17_MA0078.1 8.608664504632229 + +chr1 157512144 157512152 Sox17_MA0078.1 8.233971591806387 - diff --git a/demo/known_tfbs_chr1_hg38/Sox1_MA0870.1.bed b/demo/known_tfbs_chr1_hg38/Sox1_MA0870.1.bed new file mode 100644 index 0000000..f9c8f3c --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/Sox1_MA0870.1.bed @@ -0,0 +1,119 @@ +chr1 790425 790439 Sox1_MA0870.1 2.351519707561110 - +chr1 790510 790524 Sox1_MA0870.1 7.844739823594031 - +chr1 790565 790579 Sox1_MA0870.1 2.351519707561110 - +chr1 1157886 1157900 Sox1_MA0870.1 3.733009923481624 + +chr1 1678681 1678695 Sox1_MA0870.1 3.128780470713571 + +chr1 1678681 1678695 Sox1_MA0870.1 0.871085004919809 - +chr1 3900295 3900309 Sox1_MA0870.1 0.348922677322904 + +chr1 9943422 9943436 Sox1_MA0870.1 2.404767515337363 + +chr1 9943422 9943436 Sox1_MA0870.1 0.393605317858115 - +chr1 10986179 10986193 Sox1_MA0870.1 6.784305430960890 + +chr1 10986179 10986193 Sox1_MA0870.1 2.641462262039604 - +chr1 11908395 11908409 Sox1_MA0870.1 4.741323522318756 + +chr1 11908395 11908409 Sox1_MA0870.1 1.525404320187737 - +chr1 19477089 19477103 Sox1_MA0870.1 2.050797081841687 - +chr1 32222625 32222639 Sox1_MA0870.1 1.142373718248624 + +chr1 32520617 32520631 Sox1_MA0870.1 0.731316128968491 - +chr1 33099417 33099431 Sox1_MA0870.1 6.307667934816423 + +chr1 35031842 35031856 Sox1_MA0870.1 0.352690424936306 - +chr1 36386273 36386287 Sox1_MA0870.1 2.812630756229352 + +chr1 36386273 36386287 Sox1_MA0870.1 1.901426633899557 - +chr1 39509330 39509344 Sox1_MA0870.1 1.347163720465354 + +chr1 39509330 39509344 Sox1_MA0870.1 7.337903042552615 - +chr1 40097461 40097475 Sox1_MA0870.1 0.326413930503110 + +chr1 41361162 41361176 Sox1_MA0870.1 5.926459877795694 + +chr1 41361162 41361176 Sox1_MA0870.1 5.795556898035257 - +chr1 42932339 42932353 Sox1_MA0870.1 2.267599383976154 + +chr1 42932339 42932353 Sox1_MA0870.1 0.956939634578861 - +chr1 45687530 45687544 Sox1_MA0870.1 0.275736329273416 + +chr1 45687530 45687544 Sox1_MA0870.1 0.650767732733577 - +chr1 46719154 46719168 Sox1_MA0870.1 0.405486645156671 + +chr1 46719154 46719168 Sox1_MA0870.1 2.006311053033413 - +chr1 51236077 51236091 Sox1_MA0870.1 1.951004271958395 - +chr1 51501423 51501437 Sox1_MA0870.1 7.398054565825937 - +chr1 52637132 52637146 Sox1_MA0870.1 0.763269013735328 + +chr1 53326954 53326968 Sox1_MA0870.1 6.577809497808986 - +chr1 53838166 53838180 Sox1_MA0870.1 1.085407431528179 + +chr1 54801382 54801396 Sox1_MA0870.1 0.807786042087595 - +chr1 56516886 56516900 Sox1_MA0870.1 0.431045325636469 + +chr1 56821241 56821255 Sox1_MA0870.1 2.629584994266176 - +chr1 57547181 57547195 Sox1_MA0870.1 0.433927007300966 - +chr1 58573981 58573995 Sox1_MA0870.1 4.914004557258793 + +chr1 58573981 58573995 Sox1_MA0870.1 5.032644823377327 - +chr1 58903499 58903513 Sox1_MA0870.1 4.717085360104397 + +chr1 58903499 58903513 Sox1_MA0870.1 5.339408453650046 - +chr1 58968881 58968895 Sox1_MA0870.1 1.670843212083351 + +chr1 59020553 59020567 Sox1_MA0870.1 0.201119643617602 - +chr1 60390952 60390966 Sox1_MA0870.1 1.280107329522866 - +chr1 62160234 62160248 Sox1_MA0870.1 1.825165319832881 - +chr1 62800815 62800829 Sox1_MA0870.1 1.280882931850474 - +chr1 64171976 64171990 Sox1_MA0870.1 0.195509408997667 + +chr1 65895174 65895188 Sox1_MA0870.1 4.751172143755664 - +chr1 66282951 66282965 Sox1_MA0870.1 2.336963870281799 + +chr1 66335745 66335759 Sox1_MA0870.1 6.078829866992024 + +chr1 66335745 66335759 Sox1_MA0870.1 13.628615680177065 - +chr1 66336298 66336312 Sox1_MA0870.1 0.236239587223540 - +chr1 66402457 66402471 Sox1_MA0870.1 2.829458764234704 - +chr1 66436539 66436553 Sox1_MA0870.1 4.085756562002493 - +chr1 66726044 66726058 Sox1_MA0870.1 2.076728554367509 - +chr1 66758166 66758180 Sox1_MA0870.1 0.486117248348716 - +chr1 70411254 70411268 Sox1_MA0870.1 3.587318398819932 - +chr1 71053990 71054004 Sox1_MA0870.1 0.307024334013298 + +chr1 72433514 72433528 Sox1_MA0870.1 0.318990417470500 + +chr1 72433772 72433786 Sox1_MA0870.1 4.615206203766161 - +chr1 74517649 74517663 Sox1_MA0870.1 1.911270660625443 + +chr1 74517761 74517775 Sox1_MA0870.1 1.925876165004001 + +chr1 74653209 74653223 Sox1_MA0870.1 0.797130568847953 - +chr1 75908981 75908995 Sox1_MA0870.1 1.666030078375462 - +chr1 76154471 76154485 Sox1_MA0870.1 3.813224416783690 + +chr1 76154471 76154485 Sox1_MA0870.1 6.504821085936905 - +chr1 77770607 77770621 Sox1_MA0870.1 5.835503199564509 + +chr1 77927820 77927834 Sox1_MA0870.1 0.303534605324287 - +chr1 78619824 78619838 Sox1_MA0870.1 1.357386477997965 + +chr1 78650342 78650356 Sox1_MA0870.1 2.423945045517122 + +chr1 79460936 79460950 Sox1_MA0870.1 4.630300985963562 + +chr1 79711504 79711518 Sox1_MA0870.1 2.386204161212609 - +chr1 80640457 80640471 Sox1_MA0870.1 4.081259494676781 - +chr1 84599044 84599058 Sox1_MA0870.1 6.510175115384032 + +chr1 84599531 84599545 Sox1_MA0870.1 0.364778592479852 + +chr1 85062262 85062276 Sox1_MA0870.1 0.641399657489042 - +chr1 85062558 85062572 Sox1_MA0870.1 1.231688895861394 - +chr1 87045594 87045608 Sox1_MA0870.1 0.576117442351732 + +chr1 87450031 87450045 Sox1_MA0870.1 1.488098215338477 - +chr1 88192154 88192168 Sox1_MA0870.1 3.939446469292914 + +chr1 89198666 89198680 Sox1_MA0870.1 1.458929172846224 - +chr1 89524122 89524136 Sox1_MA0870.1 0.814761501046725 + +chr1 89524122 89524136 Sox1_MA0870.1 6.363263724339489 - +chr1 89670506 89670520 Sox1_MA0870.1 1.269444262263350 + +chr1 89843837 89843851 Sox1_MA0870.1 1.662715183490741 + +chr1 89843837 89843851 Sox1_MA0870.1 9.618849692576063 - +chr1 91804525 91804539 Sox1_MA0870.1 1.371563118794400 - +chr1 93179596 93179610 Sox1_MA0870.1 1.257854390278239 + +chr1 93345532 93345546 Sox1_MA0870.1 4.487595968015561 + +chr1 94418728 94418742 Sox1_MA0870.1 2.464456468990051 - +chr1 99218867 99218881 Sox1_MA0870.1 2.521318692462307 + +chr1 99218867 99218881 Sox1_MA0870.1 2.813541423870603 - +chr1 100377847 100377861 Sox1_MA0870.1 2.171819743589436 - +chr1 101051991 101052005 Sox1_MA0870.1 0.922032510099956 + +chr1 101199094 101199108 Sox1_MA0870.1 4.686984619611943 + +chr1 101438426 101438440 Sox1_MA0870.1 4.942547036772721 + +chr1 102174510 102174524 Sox1_MA0870.1 2.453812078326863 + +chr1 102435220 102435234 Sox1_MA0870.1 1.268470807374641 + +chr1 104467809 104467823 Sox1_MA0870.1 0.985995483389611 + +chr1 104747306 104747320 Sox1_MA0870.1 6.015538215155310 + +chr1 104747306 104747320 Sox1_MA0870.1 11.602333685957078 - +chr1 107016401 107016415 Sox1_MA0870.1 5.342771334752053 - +chr1 107451579 107451593 Sox1_MA0870.1 6.126999270032331 + +chr1 107777780 107777794 Sox1_MA0870.1 9.506397718191703 + +chr1 107950342 107950356 Sox1_MA0870.1 1.667577984925280 + +chr1 109283630 109283644 Sox1_MA0870.1 8.669205794753980 + +chr1 109283630 109283644 Sox1_MA0870.1 6.798668490244929 - +chr1 110339095 110339109 Sox1_MA0870.1 0.625475460045575 - +chr1 110339302 110339316 Sox1_MA0870.1 6.771068135034218 + +chr1 110339302 110339316 Sox1_MA0870.1 0.330126522741094 - +chr1 111220020 111220034 Sox1_MA0870.1 5.018545107147379 + +chr1 111508061 111508075 Sox1_MA0870.1 3.736355447379792 + +chr1 119662012 119662026 Sox1_MA0870.1 2.063791135068957 - +chr1 120535108 120535122 Sox1_MA0870.1 1.696076086182390 + +chr1 125183755 125183769 Sox1_MA0870.1 0.826277124877616 + +chr1 143239379 143239393 Sox1_MA0870.1 2.723387011743983 + diff --git a/demo/known_tfbs_chr1_hg38/Sox2_MA0143.3.bed b/demo/known_tfbs_chr1_hg38/Sox2_MA0143.3.bed new file mode 100644 index 0000000..1dad786 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/Sox2_MA0143.3.bed @@ -0,0 +1,237 @@ +chr1 1115958 1115965 Sox2_MA0143.3 9.227367117095792 + +chr1 1505148 1505155 Sox2_MA0143.3 9.227367117095792 - +chr1 1678656 1678663 Sox2_MA0143.3 9.822814603682898 - +chr1 1692505 1692512 Sox2_MA0143.3 9.822814603682898 - +chr1 1693353 1693360 Sox2_MA0143.3 8.883228360485566 - +chr1 1890428 1890435 Sox2_MA0143.3 9.822814603682898 + +chr1 2291315 2291322 Sox2_MA0143.3 8.883228360485566 + +chr1 6613305 6613312 Sox2_MA0143.3 8.883228360485566 - +chr1 6613592 6613599 Sox2_MA0143.3 8.883228360485566 + +chr1 9910009 9910016 Sox2_MA0143.3 9.227367117095792 - +chr1 11479108 11479115 Sox2_MA0143.3 9.822814603682898 - +chr1 12040790 12040797 Sox2_MA0143.3 9.039827515344346 + +chr1 13730569 13730576 Sox2_MA0143.3 8.883228360485566 + +chr1 15835162 15835169 Sox2_MA0143.3 8.883228360485566 + +chr1 15836260 15836267 Sox2_MA0143.3 8.883228360485566 + +chr1 15976059 15976066 Sox2_MA0143.3 9.227367117095792 - +chr1 16206845 16206852 Sox2_MA0143.3 8.883228360485566 + +chr1 16905627 16905634 Sox2_MA0143.3 9.822814603682898 + +chr1 17438549 17438556 Sox2_MA0143.3 8.695688758734118 - +chr1 21345828 21345835 Sox2_MA0143.3 9.227367117095792 + +chr1 23344548 23344555 Sox2_MA0143.3 8.883228360485566 - +chr1 23960048 23960055 Sox2_MA0143.3 9.635275001931451 + +chr1 24391744 24391751 Sox2_MA0143.3 8.883228360485566 - +chr1 24392251 24392258 Sox2_MA0143.3 9.227367117095792 + +chr1 25233064 25233071 Sox2_MA0143.3 9.635275001931451 + +chr1 25906040 25906047 Sox2_MA0143.3 9.039827515344346 - +chr1 25906199 25906206 Sox2_MA0143.3 9.227367117095792 - +chr1 26695622 26695629 Sox2_MA0143.3 8.883228360485566 + +chr1 27914864 27914871 Sox2_MA0143.3 9.822814603682898 + +chr1 28370121 28370128 Sox2_MA0143.3 8.883228360485566 + +chr1 28643403 28643410 Sox2_MA0143.3 9.227367117095792 + +chr1 28737174 28737181 Sox2_MA0143.3 8.695688758734118 + +chr1 28914711 28914718 Sox2_MA0143.3 9.635275001931451 + +chr1 31549540 31549547 Sox2_MA0143.3 8.883228360485566 - +chr1 31605955 31605962 Sox2_MA0143.3 9.227367117095792 - +chr1 32250035 32250042 Sox2_MA0143.3 9.822814603682898 + +chr1 32394824 32394831 Sox2_MA0143.3 8.883228360485566 + +chr1 32500760 32500767 Sox2_MA0143.3 9.635275001931451 - +chr1 33349770 33349777 Sox2_MA0143.3 9.822814603682898 - +chr1 33350011 33350018 Sox2_MA0143.3 8.883228360485566 + +chr1 33461426 33461433 Sox2_MA0143.3 8.883228360485566 - +chr1 33461441 33461448 Sox2_MA0143.3 9.822814603682898 - +chr1 35193155 35193162 Sox2_MA0143.3 9.227367117095792 + +chr1 35506398 35506405 Sox2_MA0143.3 9.635275001931451 - +chr1 35883136 35883143 Sox2_MA0143.3 9.822814603682898 + +chr1 38012896 38012903 Sox2_MA0143.3 9.227367117095792 + +chr1 39026760 39026767 Sox2_MA0143.3 9.039827515344346 + +chr1 39408682 39408689 Sox2_MA0143.3 9.227367117095792 + +chr1 39576012 39576019 Sox2_MA0143.3 9.227367117095792 - +chr1 39960705 39960712 Sox2_MA0143.3 9.227367117095792 - +chr1 40450289 40450296 Sox2_MA0143.3 9.227367117095792 - +chr1 40862325 40862332 Sox2_MA0143.3 8.883228360485566 - +chr1 42958593 42958600 Sox2_MA0143.3 9.822814603682898 + +chr1 44721256 44721263 Sox2_MA0143.3 9.227367117095792 - +chr1 45011699 45011706 Sox2_MA0143.3 9.039827515344346 - +chr1 45012042 45012049 Sox2_MA0143.3 9.822814603682898 + +chr1 45491333 45491340 Sox2_MA0143.3 8.695688758734118 - +chr1 45584781 45584788 Sox2_MA0143.3 9.635275001931451 + +chr1 46133181 46133188 Sox2_MA0143.3 9.227367117095792 - +chr1 46442741 46442748 Sox2_MA0143.3 9.039827515344346 + +chr1 50724831 50724838 Sox2_MA0143.3 8.695688758734118 + +chr1 51235468 51235475 Sox2_MA0143.3 9.227367117095792 - +chr1 51268376 51268383 Sox2_MA0143.3 9.822814603682898 + +chr1 51501366 51501373 Sox2_MA0143.3 9.039827515344346 + +chr1 51570094 51570101 Sox2_MA0143.3 9.822814603682898 - +chr1 52553391 52553398 Sox2_MA0143.3 9.635275001931451 - +chr1 56045413 56045420 Sox2_MA0143.3 9.822814603682898 - +chr1 56525622 56525629 Sox2_MA0143.3 9.227367117095792 + +chr1 59266976 59266983 Sox2_MA0143.3 9.635275001931451 - +chr1 61077684 61077691 Sox2_MA0143.3 9.635275001931451 - +chr1 61724765 61724772 Sox2_MA0143.3 8.883228360485566 - +chr1 64960939 64960946 Sox2_MA0143.3 9.039827515344346 - +chr1 64966880 64966887 Sox2_MA0143.3 8.883228360485566 + +chr1 65067634 65067641 Sox2_MA0143.3 9.822814603682898 + +chr1 65459589 65459596 Sox2_MA0143.3 9.039827515344346 + +chr1 65459602 65459609 Sox2_MA0143.3 9.822814603682898 - +chr1 66336582 66336589 Sox2_MA0143.3 9.822814603682898 - +chr1 66381080 66381087 Sox2_MA0143.3 9.039827515344346 - +chr1 67171782 67171789 Sox2_MA0143.3 9.635275001931451 - +chr1 67214434 67214441 Sox2_MA0143.3 8.883228360485566 - +chr1 67685189 67685196 Sox2_MA0143.3 9.227367117095792 + +chr1 67686699 67686706 Sox2_MA0143.3 9.227367117095792 + +chr1 67736201 67736208 Sox2_MA0143.3 8.883228360485566 - +chr1 69382813 69382820 Sox2_MA0143.3 9.822814603682898 - +chr1 69967379 69967386 Sox2_MA0143.3 9.227367117095792 - +chr1 70204973 70204980 Sox2_MA0143.3 8.883228360485566 - +chr1 70685632 70685639 Sox2_MA0143.3 9.822814603682898 + +chr1 71080751 71080758 Sox2_MA0143.3 9.822814603682898 - +chr1 72433173 72433180 Sox2_MA0143.3 8.695688758734118 + +chr1 75614748 75614755 Sox2_MA0143.3 8.695688758734118 + +chr1 77683746 77683753 Sox2_MA0143.3 8.883228360485566 + +chr1 78061157 78061164 Sox2_MA0143.3 9.822814603682898 + +chr1 78088173 78088180 Sox2_MA0143.3 8.695688758734118 + +chr1 78142921 78142928 Sox2_MA0143.3 9.822814603682898 - +chr1 78143124 78143131 Sox2_MA0143.3 8.883228360485566 + +chr1 78281723 78281730 Sox2_MA0143.3 9.227367117095792 - +chr1 78649721 78649728 Sox2_MA0143.3 9.822814603682898 + +chr1 78650066 78650073 Sox2_MA0143.3 9.822814603682898 + +chr1 78855468 78855475 Sox2_MA0143.3 8.883228360485566 + +chr1 79695060 79695067 Sox2_MA0143.3 8.883228360485566 + +chr1 80640204 80640211 Sox2_MA0143.3 9.635275001931451 - +chr1 81549312 81549319 Sox2_MA0143.3 9.822814603682898 - +chr1 83131583 83131590 Sox2_MA0143.3 9.635275001931451 - +chr1 83999251 83999258 Sox2_MA0143.3 9.822814603682898 - +chr1 84862994 84863001 Sox2_MA0143.3 9.822814603682898 - +chr1 84945298 84945305 Sox2_MA0143.3 9.227367117095792 - +chr1 85308447 85308454 Sox2_MA0143.3 9.635275001931451 + +chr1 85335208 85335215 Sox2_MA0143.3 9.822814603682898 - +chr1 85708084 85708091 Sox2_MA0143.3 9.227367117095792 + +chr1 87052289 87052296 Sox2_MA0143.3 9.635275001931451 - +chr1 87328355 87328362 Sox2_MA0143.3 9.227367117095792 + +chr1 87813761 87813768 Sox2_MA0143.3 9.227367117095792 + +chr1 88180639 88180646 Sox2_MA0143.3 9.227367117095792 + +chr1 88891336 88891343 Sox2_MA0143.3 9.227367117095792 + +chr1 89022339 89022346 Sox2_MA0143.3 9.039827515344346 - +chr1 89198673 89198680 Sox2_MA0143.3 9.227367117095792 + +chr1 89524853 89524860 Sox2_MA0143.3 8.695688758734118 - +chr1 89694065 89694072 Sox2_MA0143.3 9.227367117095792 + +chr1 89855904 89855911 Sox2_MA0143.3 8.695688758734118 - +chr1 90510055 90510062 Sox2_MA0143.3 9.635275001931451 + +chr1 91021592 91021599 Sox2_MA0143.3 8.883228360485566 + +chr1 92299391 92299398 Sox2_MA0143.3 9.227367117095792 - +chr1 92485077 92485084 Sox2_MA0143.3 8.695688758734118 + +chr1 92537636 92537643 Sox2_MA0143.3 9.227367117095792 - +chr1 92584719 92584726 Sox2_MA0143.3 9.227367117095792 - +chr1 92951229 92951236 Sox2_MA0143.3 9.822814603682898 - +chr1 93608485 93608492 Sox2_MA0143.3 8.883228360485566 + +chr1 93681022 93681029 Sox2_MA0143.3 9.822814603682898 - +chr1 93716155 93716162 Sox2_MA0143.3 8.695688758734118 - +chr1 93879296 93879303 Sox2_MA0143.3 9.227367117095792 - +chr1 96722493 96722500 Sox2_MA0143.3 9.822814603682898 + +chr1 97011188 97011195 Sox2_MA0143.3 9.822814603682898 - +chr1 97848781 97848788 Sox2_MA0143.3 9.822814603682898 - +chr1 98871245 98871252 Sox2_MA0143.3 9.822814603682898 + +chr1 99752051 99752058 Sox2_MA0143.3 9.822814603682898 - +chr1 99759094 99759101 Sox2_MA0143.3 9.227367117095792 + +chr1 100351571 100351578 Sox2_MA0143.3 8.883228360485566 + +chr1 100377786 100377793 Sox2_MA0143.3 8.883228360485566 - +chr1 100896775 100896782 Sox2_MA0143.3 9.822814603682898 + +chr1 101179325 101179332 Sox2_MA0143.3 9.227367117095792 - +chr1 101291580 101291587 Sox2_MA0143.3 8.883228360485566 + +chr1 101309719 101309726 Sox2_MA0143.3 9.822814603682898 + +chr1 101364225 101364232 Sox2_MA0143.3 8.695688758734118 + +chr1 102174251 102174258 Sox2_MA0143.3 8.883228360485566 + +chr1 103327194 103327201 Sox2_MA0143.3 9.039827515344346 + +chr1 105137603 105137610 Sox2_MA0143.3 9.227367117095792 + +chr1 107777175 107777182 Sox2_MA0143.3 8.695688758734118 - +chr1 107935701 107935708 Sox2_MA0143.3 9.227367117095792 - +chr1 107964348 107964355 Sox2_MA0143.3 9.227367117095792 + +chr1 108551695 108551702 Sox2_MA0143.3 9.635275001931451 + +chr1 108877348 108877355 Sox2_MA0143.3 9.822814603682898 + +chr1 109484201 109484208 Sox2_MA0143.3 9.822814603682898 - +chr1 109984597 109984604 Sox2_MA0143.3 8.883228360485566 - +chr1 111216050 111216057 Sox2_MA0143.3 8.883228360485566 - +chr1 112715623 112715630 Sox2_MA0143.3 8.695688758734118 + +chr1 113192017 113192024 Sox2_MA0143.3 9.822814603682898 - +chr1 113880739 113880746 Sox2_MA0143.3 9.635275001931451 + +chr1 114511060 114511067 Sox2_MA0143.3 9.822814603682898 + +chr1 114512025 114512032 Sox2_MA0143.3 9.635275001931451 - +chr1 114716556 114716563 Sox2_MA0143.3 9.227367117095792 + +chr1 114757473 114757480 Sox2_MA0143.3 8.883228360485566 - +chr1 115139249 115139256 Sox2_MA0143.3 9.822814603682898 + +chr1 116288498 116288505 Sox2_MA0143.3 9.227367117095792 + +chr1 116556702 116556709 Sox2_MA0143.3 9.822814603682898 - +chr1 118915117 118915124 Sox2_MA0143.3 8.883228360485566 + +chr1 119266699 119266706 Sox2_MA0143.3 9.822814603682898 - +chr1 119648286 119648293 Sox2_MA0143.3 9.227367117095792 - +chr1 120176212 120176219 Sox2_MA0143.3 8.883228360485566 - +chr1 120850913 120850920 Sox2_MA0143.3 8.695688758734118 - +chr1 120914463 120914470 Sox2_MA0143.3 9.822814603682898 + +chr1 125176982 125176989 Sox2_MA0143.3 8.695688758734118 - +chr1 125181259 125181266 Sox2_MA0143.3 8.695688758734118 - +chr1 144412861 144412868 Sox2_MA0143.3 8.883228360485566 + +chr1 144523646 144523653 Sox2_MA0143.3 9.822814603682898 + +chr1 145281401 145281408 Sox2_MA0143.3 8.883228360485566 + +chr1 145979434 145979441 Sox2_MA0143.3 8.883228360485566 + +chr1 147600152 147600159 Sox2_MA0143.3 9.039827515344346 - +chr1 148522886 148522893 Sox2_MA0143.3 8.883228360485566 + +chr1 150067164 150067171 Sox2_MA0143.3 9.822814603682898 + +chr1 150149797 150149804 Sox2_MA0143.3 9.822814603682898 - +chr1 150255635 150255642 Sox2_MA0143.3 9.822814603682898 - +chr1 150255865 150255872 Sox2_MA0143.3 9.227367117095792 + +chr1 150974252 150974259 Sox2_MA0143.3 9.822814603682898 - +chr1 151156523 151156530 Sox2_MA0143.3 9.227367117095792 + +chr1 151540131 151540138 Sox2_MA0143.3 8.883228360485566 + +chr1 151839892 151839899 Sox2_MA0143.3 8.883228360485566 - +chr1 151984699 151984706 Sox2_MA0143.3 9.227367117095792 + +chr1 153776081 153776088 Sox2_MA0143.3 8.883228360485566 + +chr1 153805348 153805355 Sox2_MA0143.3 8.883228360485566 - +chr1 154860037 154860044 Sox2_MA0143.3 8.883228360485566 - +chr1 154974472 154974479 Sox2_MA0143.3 8.883228360485566 - +chr1 155946644 155946651 Sox2_MA0143.3 9.822814603682898 + +chr1 156054154 156054161 Sox2_MA0143.3 9.227367117095792 - +chr1 156456971 156456978 Sox2_MA0143.3 9.039827515344346 + +chr1 157512405 157512412 Sox2_MA0143.3 8.883228360485566 + +chr1 159012946 159012953 Sox2_MA0143.3 9.039827515344346 + +chr1 159923524 159923531 Sox2_MA0143.3 9.227367117095792 - +chr1 160712223 160712230 Sox2_MA0143.3 8.883228360485566 + +chr1 161021061 161021068 Sox2_MA0143.3 9.227367117095792 + +chr1 161045374 161045381 Sox2_MA0143.3 8.883228360485566 - +chr1 161045742 161045749 Sox2_MA0143.3 9.822814603682898 - +chr1 161159760 161159767 Sox2_MA0143.3 8.883228360485566 - +chr1 161718721 161718728 Sox2_MA0143.3 9.822814603682898 + +chr1 161915455 161915462 Sox2_MA0143.3 9.039827515344346 + +chr1 162361893 162361900 Sox2_MA0143.3 8.695688758734118 - +chr1 165828716 165828723 Sox2_MA0143.3 9.822814603682898 + +chr1 165851324 165851331 Sox2_MA0143.3 9.227367117095792 + +chr1 166490477 166490484 Sox2_MA0143.3 8.883228360485566 - +chr1 166839714 166839721 Sox2_MA0143.3 9.822814603682898 + +chr1 166876219 166876226 Sox2_MA0143.3 8.883228360485566 - +chr1 167220292 167220299 Sox2_MA0143.3 9.635275001931451 + +chr1 167628333 167628340 Sox2_MA0143.3 8.883228360485566 - +chr1 167676954 167676961 Sox2_MA0143.3 8.883228360485566 + +chr1 167714918 167714925 Sox2_MA0143.3 9.822814603682898 + +chr1 168225676 168225683 Sox2_MA0143.3 9.822814603682898 + +chr1 168553913 168553920 Sox2_MA0143.3 8.883228360485566 - +chr1 169106185 169106192 Sox2_MA0143.3 8.883228360485566 + +chr1 169367707 169367714 Sox2_MA0143.3 9.039827515344346 + +chr1 169594776 169594783 Sox2_MA0143.3 9.039827515344346 - +chr1 169680703 169680710 Sox2_MA0143.3 9.822814603682898 - +chr1 169680870 169680877 Sox2_MA0143.3 8.695688758734118 - +chr1 169681006 169681013 Sox2_MA0143.3 8.695688758734118 + +chr1 169681158 169681165 Sox2_MA0143.3 9.227367117095792 + +chr1 170531565 170531572 Sox2_MA0143.3 8.883228360485566 - +chr1 172639307 172639314 Sox2_MA0143.3 9.227367117095792 + +chr1 173222630 173222637 Sox2_MA0143.3 8.883228360485566 + +chr1 173222920 173222927 Sox2_MA0143.3 9.227367117095792 - +chr1 173867907 173867914 Sox2_MA0143.3 9.227367117095792 - +chr1 173868162 173868169 Sox2_MA0143.3 8.695688758734118 + +chr1 174815340 174815347 Sox2_MA0143.3 9.227367117095792 - +chr1 175600617 175600624 Sox2_MA0143.3 8.883228360485566 - +chr1 177946172 177946179 Sox2_MA0143.3 8.883228360485566 - +chr1 178100679 178100686 Sox2_MA0143.3 9.822814603682898 + +chr1 178973343 178973350 Sox2_MA0143.3 8.883228360485566 + +chr1 179034826 179034833 Sox2_MA0143.3 8.883228360485566 + +chr1 181022190 181022197 Sox2_MA0143.3 9.039827515344346 - +chr1 181430267 181430274 Sox2_MA0143.3 9.227367117095792 - diff --git a/demo/known_tfbs_chr1_hg38/Sox3_MA0514.1.bed b/demo/known_tfbs_chr1_hg38/Sox3_MA0514.1.bed new file mode 100644 index 0000000..0648d02 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/Sox3_MA0514.1.bed @@ -0,0 +1,823 @@ +chr1 1019899 1019908 Sox3_MA0514.1 8.343108293361626 + +chr1 1115958 1115967 Sox3_MA0514.1 9.698701251845648 + +chr1 1505146 1505155 Sox3_MA0514.1 10.649974934694821 - +chr1 1693351 1693360 Sox3_MA0514.1 9.225503194342286 - +chr1 1890428 1890437 Sox3_MA0514.1 10.799805209265227 + +chr1 2548817 2548826 Sox3_MA0514.1 8.509809501733155 - +chr1 2548831 2548840 Sox3_MA0514.1 8.232177789377298 - +chr1 3491417 3491426 Sox3_MA0514.1 8.814694906667215 + +chr1 3677315 3677324 Sox3_MA0514.1 8.548359696118187 + +chr1 4267562 4267571 Sox3_MA0514.1 9.016750263854938 + +chr1 6394040 6394049 Sox3_MA0514.1 7.815106635338782 - +chr1 6613592 6613601 Sox3_MA0514.1 8.369256185544039 + +chr1 8097999 8098008 Sox3_MA0514.1 9.612942269377143 + +chr1 8283089 8283098 Sox3_MA0514.1 7.913617496210952 - +chr1 8397526 8397535 Sox3_MA0514.1 7.777662241349537 - +chr1 8427800 8427809 Sox3_MA0514.1 8.921723589804014 - +chr1 8604363 8604372 Sox3_MA0514.1 8.232177789377298 - +chr1 8629618 8629627 Sox3_MA0514.1 7.856035216149270 - +chr1 8703194 8703203 Sox3_MA0514.1 10.015232734787586 - +chr1 8764425 8764434 Sox3_MA0514.1 8.232177789377298 - +chr1 8817417 8817426 Sox3_MA0514.1 8.509809501733153 + 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221776845 Sox3_MA0514.1 8.058146649292617 - +chr1 221777196 221777205 Sox3_MA0514.1 7.644559682075344 + +chr1 221840319 221840328 Sox3_MA0514.1 8.401443356092017 + +chr1 221840465 221840474 Sox3_MA0514.1 8.058146649292617 - +chr1 222583190 222583199 Sox3_MA0514.1 8.232177789377298 - +chr1 222643947 222643956 Sox3_MA0514.1 7.794389956645750 - +chr1 222654933 222654942 Sox3_MA0514.1 9.199355302159871 + +chr1 222655111 222655120 Sox3_MA0514.1 7.575263534180197 + +chr1 222732888 222732897 Sox3_MA0514.1 9.612942269377143 + +chr1 222773162 222773171 Sox3_MA0514.1 8.232177789377298 - +chr1 223189990 223189999 Sox3_MA0514.1 7.768729966409193 - +chr1 223550711 223550720 Sox3_MA0514.1 8.880795008993525 + +chr1 223551141 223551150 Sox3_MA0514.1 8.232177789377298 + +chr1 223551148 223551157 Sox3_MA0514.1 8.232177789377298 + +chr1 223771692 223771701 Sox3_MA0514.1 8.814694906667215 - +chr1 223845893 223845902 Sox3_MA0514.1 8.730964734423118 + +chr1 224182582 224182591 Sox3_MA0514.1 8.112950249812096 + +chr1 224357509 224357518 Sox3_MA0514.1 10.799805209265227 + +chr1 224498215 224498224 Sox3_MA0514.1 8.401443356092019 - +chr1 224503366 224503375 Sox3_MA0514.1 8.603163296637666 + +chr1 224623953 224623962 Sox3_MA0514.1 7.627831966779129 + +chr1 224624031 224624040 Sox3_MA0514.1 9.612942269377143 - +chr1 224701264 224701273 Sox3_MA0514.1 7.537474922982923 + +chr1 224737038 224737047 Sox3_MA0514.1 9.188394216995114 + +chr1 225427599 225427608 Sox3_MA0514.1 10.331414641528475 - +chr1 225428599 225428608 Sox3_MA0514.1 8.122370426698298 + +chr1 225445198 225445207 Sox3_MA0514.1 9.698701251845648 + +chr1 225467190 225467199 Sox3_MA0514.1 7.584683711066399 - +chr1 225778340 225778349 Sox3_MA0514.1 10.649974934694820 + +chr1 226062483 226062492 Sox3_MA0514.1 8.535957393915570 + +chr1 226122049 226122058 Sox3_MA0514.1 10.386218242047955 + +chr1 226445151 226445160 Sox3_MA0514.1 7.794389956645750 - +chr1 226674971 226674980 Sox3_MA0514.1 9.612942269377143 - diff --git a/demo/known_tfbs_chr1_hg38/Sox5_MA0087.1.bed b/demo/known_tfbs_chr1_hg38/Sox5_MA0087.1.bed new file mode 100644 index 0000000..26e0e36 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/Sox5_MA0087.1.bed @@ -0,0 +1,236 @@ +chr1 6359656 6359662 Sox5_MA0087.1 8.423660251426679 - +chr1 7961203 7961209 Sox5_MA0087.1 8.423660251426679 - +chr1 8764534 8764540 Sox5_MA0087.1 8.423660251426679 - +chr1 11664742 11664748 Sox5_MA0087.1 8.423660251426679 - +chr1 18926919 18926925 Sox5_MA0087.1 8.423660251426679 - +chr1 19711068 19711074 Sox5_MA0087.1 8.423660251426679 - +chr1 21294757 21294763 Sox5_MA0087.1 8.423660251426679 + +chr1 23825827 23825833 Sox5_MA0087.1 8.423660251426679 + +chr1 24391718 24391724 Sox5_MA0087.1 8.423660251426679 - +chr1 25233066 25233072 Sox5_MA0087.1 8.423660251426679 + +chr1 25239880 25239886 Sox5_MA0087.1 8.423660251426679 + +chr1 31065421 31065427 Sox5_MA0087.1 8.423660251426679 - +chr1 31483311 31483317 Sox5_MA0087.1 8.423660251426679 - +chr1 32651210 32651216 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8.423660251426679 + +chr1 66984486 66984492 Sox5_MA0087.1 8.423660251426679 - +chr1 67171781 67171787 Sox5_MA0087.1 8.423660251426679 - +chr1 67214442 67214448 Sox5_MA0087.1 8.423660251426679 + +chr1 67214768 67214774 Sox5_MA0087.1 8.423660251426679 + +chr1 67340043 67340049 Sox5_MA0087.1 8.423660251426679 - +chr1 67736423 67736429 Sox5_MA0087.1 8.423660251426679 - +chr1 69320841 69320847 Sox5_MA0087.1 8.423660251426679 + +chr1 69321327 69321333 Sox5_MA0087.1 8.423660251426679 + +chr1 70205821 70205827 Sox5_MA0087.1 8.423660251426679 + +chr1 70411971 70411977 Sox5_MA0087.1 8.423660251426679 + +chr1 70412262 70412268 Sox5_MA0087.1 8.423660251426679 - +chr1 71967812 71967818 Sox5_MA0087.1 8.423660251426679 + +chr1 74197963 74197969 Sox5_MA0087.1 8.423660251426679 - +chr1 74517969 74517975 Sox5_MA0087.1 8.423660251426679 - +chr1 74653142 74653148 Sox5_MA0087.1 8.423660251426679 - +chr1 74653244 74653250 Sox5_MA0087.1 8.423660251426679 + +chr1 74733844 74733850 Sox5_MA0087.1 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8.423660251426679 - +chr1 170214635 170214641 Sox5_MA0087.1 8.423660251426679 - +chr1 170531958 170531964 Sox5_MA0087.1 8.423660251426679 - +chr1 171188767 171188773 Sox5_MA0087.1 8.423660251426679 - +chr1 171252038 171252044 Sox5_MA0087.1 8.423660251426679 + +chr1 171615457 171615463 Sox5_MA0087.1 8.423660251426679 + +chr1 172181223 172181229 Sox5_MA0087.1 8.423660251426679 + +chr1 172342827 172342833 Sox5_MA0087.1 8.423660251426679 + +chr1 172343954 172343960 Sox5_MA0087.1 8.423660251426679 + +chr1 172745812 172745818 Sox5_MA0087.1 8.423660251426679 - +chr1 172746076 172746082 Sox5_MA0087.1 8.423660251426679 - +chr1 173020405 173020411 Sox5_MA0087.1 8.423660251426679 + +chr1 173213046 173213052 Sox5_MA0087.1 8.423660251426679 - +chr1 173715601 173715607 Sox5_MA0087.1 8.423660251426679 - +chr1 173825201 173825207 Sox5_MA0087.1 8.423660251426679 + +chr1 174968834 174968840 Sox5_MA0087.1 8.423660251426679 - +chr1 174968943 174968949 Sox5_MA0087.1 8.423660251426679 + +chr1 175600804 175600810 Sox5_MA0087.1 8.423660251426679 - +chr1 176207983 176207989 Sox5_MA0087.1 8.423660251426679 - +chr1 176897702 176897708 Sox5_MA0087.1 8.423660251426679 - +chr1 178579774 178579780 Sox5_MA0087.1 8.423660251426679 - diff --git a/demo/known_tfbs_chr1_hg38/Sox6_MA0515.1.bed b/demo/known_tfbs_chr1_hg38/Sox6_MA0515.1.bed new file mode 100644 index 0000000..c9e9d87 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/Sox6_MA0515.1.bed @@ -0,0 +1,354 @@ +chr1 1019899 1019908 Sox6_MA0515.1 7.558045740196523 + +chr1 1115958 1115967 Sox6_MA0515.1 8.637466317032025 + +chr1 1505146 1505155 Sox6_MA0515.1 10.055508765327689 - +chr1 1890428 1890437 Sox6_MA0515.1 9.998538796050955 + +chr1 3677315 3677324 Sox6_MA0515.1 8.974536567822215 + +chr1 4267562 4267571 Sox6_MA0515.1 9.089416820227786 + +chr1 7961202 7961211 Sox6_MA0515.1 8.333963383573707 - +chr1 8097999 8098008 Sox6_MA0515.1 9.147938410174492 + +chr1 8427800 8427809 Sox6_MA0515.1 8.739970251911640 - +chr1 8703194 8703203 Sox6_MA0515.1 8.104431606125290 - +chr1 9037758 9037767 Sox6_MA0515.1 9.750454211199397 - +chr1 9069783 9069792 Sox6_MA0515.1 9.465275357781493 + +chr1 9164163 9164172 Sox6_MA0515.1 8.568120030229334 - +chr1 9629714 9629723 Sox6_MA0515.1 9.147938410174492 - +chr1 9910007 9910016 Sox6_MA0515.1 8.637466317032025 - +chr1 11479106 11479115 Sox6_MA0515.1 8.752346569437597 - +chr1 12436117 12436126 Sox6_MA0515.1 9.147938410174492 - +chr1 15834884 15834893 Sox6_MA0515.1 8.976088188492186 - +chr1 15976057 15976066 Sox6_MA0515.1 8.637466317032025 - +chr1 16012974 16012983 Sox6_MA0515.1 8.511761367770468 - +chr1 16544924 16544933 Sox6_MA0515.1 8.453239777823763 + +chr1 16728355 16728364 Sox6_MA0515.1 8.453239777823761 - +chr1 16905627 16905636 Sox6_MA0515.1 9.998538796050955 + +chr1 17141573 17141582 Sox6_MA0515.1 8.568120030229334 + +chr1 18926918 18926927 Sox6_MA0515.1 9.865334463604970 - +chr1 19477087 19477096 Sox6_MA0515.1 8.332411762903734 - +chr1 21345828 21345837 Sox6_MA0515.1 9.534211975329237 + 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28914866 28914875 Sox6_MA0515.1 7.728344341208857 + +chr1 28927199 28927208 Sox6_MA0515.1 7.684496799591429 + +chr1 28927501 28927510 Sox6_MA0515.1 8.568120030229334 + +chr1 29182181 29182190 Sox6_MA0515.1 7.817701132037413 + +chr1 31154935 31154944 Sox6_MA0515.1 8.568120030229334 - +chr1 31549022 31549031 Sox6_MA0515.1 8.339911146088163 + +chr1 31605953 31605962 Sox6_MA0515.1 9.534211975329237 - +chr1 32013566 32013575 Sox6_MA0515.1 7.728344341208857 - +chr1 32014438 32014447 Sox6_MA0515.1 8.454791398493734 + +chr1 32072825 32072834 Sox6_MA0515.1 8.625089999506068 - +chr1 32250035 32250044 Sox6_MA0515.1 9.649092227734808 + +chr1 32250055 32250064 Sox6_MA0515.1 7.728344341208857 + +chr1 32500758 32500767 Sox6_MA0515.1 10.081309427747382 - +chr1 32651209 32651218 Sox6_MA0515.1 8.187202237821717 - +chr1 32981144 32981153 Sox6_MA0515.1 9.057307199518641 + +chr1 33349890 33349899 Sox6_MA0515.1 9.115828789465345 - +chr1 34860032 34860041 Sox6_MA0515.1 8.104431606125290 - +chr1 35193155 35193164 Sox6_MA0515.1 9.883658543645383 + +chr1 35269261 35269270 Sox6_MA0515.1 8.453239777823761 - +chr1 35506396 35506405 Sox6_MA0515.1 10.774456439428139 - +chr1 38475328 38475337 Sox6_MA0515.1 8.861207936086613 - +chr1 39026760 39026769 Sox6_MA0515.1 9.966429175341810 + +chr1 39576010 39576019 Sox6_MA0515.1 9.883658543645382 - +chr1 39902011 39902020 Sox6_MA0515.1 9.230709041870918 + +chr1 40039729 40039738 Sox6_MA0515.1 8.568120030229334 - +chr1 40450287 40450296 Sox6_MA0515.1 8.637466317032025 - +chr1 40450458 40450467 Sox6_MA0515.1 7.843224593614428 - +chr1 42958593 42958602 Sox6_MA0515.1 9.477242006052503 + +chr1 44030663 44030672 Sox6_MA0515.1 7.556494119526549 - +chr1 44721254 44721263 Sox6_MA0515.1 7.670687199741234 - +chr1 44721300 44721309 Sox6_MA0515.1 8.104431606125290 - +chr1 45011697 45011706 Sox6_MA0515.1 10.138279397024114 - +chr1 45584781 45584790 Sox6_MA0515.1 9.356413991132476 + +chr1 46133179 46133188 Sox6_MA0515.1 9.362361753646930 - +chr1 47333608 47333617 Sox6_MA0515.1 8.072321985416144 - +chr1 47334338 47334347 Sox6_MA0515.1 8.454791398493734 + +chr1 50873577 50873586 Sox6_MA0515.1 7.480512898018517 + +chr1 51235466 51235475 Sox6_MA0515.1 7.670687199741234 - +chr1 51268376 51268385 Sox6_MA0515.1 10.170389017733260 + +chr1 51285347 51285356 Sox6_MA0515.1 9.578603989517093 + +chr1 51570092 51570101 Sox6_MA0515.1 10.170389017733260 - +chr1 52553389 52553398 Sox6_MA0515.1 10.253159649429687 - +chr1 52637083 52637092 Sox6_MA0515.1 8.219083131168134 - +chr1 55287963 55287972 Sox6_MA0515.1 9.637125579463799 + +chr1 56135534 56135543 Sox6_MA0515.1 8.104431606125290 - +chr1 56516914 56516923 Sox6_MA0515.1 8.974536567822215 + +chr1 56517165 56517174 Sox6_MA0515.1 7.817701132037413 + +chr1 56525622 56525631 Sox6_MA0515.1 10.055508765327689 + +chr1 58573801 58573810 Sox6_MA0515.1 9.344037673606518 - +chr1 58816016 58816025 Sox6_MA0515.1 7.799377051997000 - +chr1 59008108 59008117 Sox6_MA0515.1 7.686048420261400 - +chr1 59013776 59013785 Sox6_MA0515.1 9.147938410174492 + +chr1 59046445 59046454 Sox6_MA0515.1 8.104431606125290 + +chr1 59266974 59266983 Sox6_MA0515.1 9.356413991132476 - +chr1 59947666 59947675 Sox6_MA0515.1 7.537482867295251 + +chr1 60390997 60391006 Sox6_MA0515.1 8.861207936086615 + +chr1 61077682 61077691 Sox6_MA0515.1 8.561485095523992 - +chr1 61332491 61332500 Sox6_MA0515.1 8.104431606125290 + +chr1 61453330 61453339 Sox6_MA0515.1 8.536648806137864 - +chr1 62436474 62436483 Sox6_MA0515.1 8.275441793627001 - +chr1 62783896 62783905 Sox6_MA0515.1 9.115828789465345 - +chr1 62784466 62784475 Sox6_MA0515.1 8.861207936086615 + +chr1 62810968 62810977 Sox6_MA0515.1 8.104431606125290 + +chr1 63125216 63125225 Sox6_MA0515.1 8.739970251911640 + +chr1 63125315 63125324 Sox6_MA0515.1 9.578603989517092 - +chr1 64987780 64987789 Sox6_MA0515.1 7.652363119700823 - +chr1 65067634 65067643 Sox6_MA0515.1 9.998538796050955 + +chr1 65067831 65067840 Sox6_MA0515.1 8.104431606125290 - +chr1 65068687 65068696 Sox6_MA0515.1 8.104431606125290 + +chr1 65420341 65420350 Sox6_MA0515.1 8.219083131168135 + +chr1 65459589 65459598 Sox6_MA0515.1 8.274754621436115 + +chr1 65959010 65959019 Sox6_MA0515.1 8.104431606125290 + +chr1 65959203 65959212 Sox6_MA0515.1 7.686048420261400 - +chr1 65959249 65959258 Sox6_MA0515.1 9.344037673606518 + +chr1 66282958 66282967 Sox6_MA0515.1 8.187202237821717 + +chr1 66336580 66336589 Sox6_MA0515.1 9.998538796050955 - +chr1 66342745 66342754 Sox6_MA0515.1 9.147938410174492 - +chr1 66374440 66374449 Sox6_MA0515.1 9.230709041870918 + +chr1 66380742 66380751 Sox6_MA0515.1 7.512646577909122 - +chr1 66381078 66381087 Sox6_MA0515.1 8.446604843118418 - +chr1 66397077 66397086 Sox6_MA0515.1 7.684496799591429 + +chr1 66445612 66445621 Sox6_MA0515.1 8.454791398493734 + +chr1 67171780 67171789 Sox6_MA0515.1 10.774456439428139 - +chr1 67685189 67685198 Sox6_MA0515.1 9.883658543645383 + +chr1 67686699 67686708 Sox6_MA0515.1 8.465616095349720 + +chr1 68180868 68180877 Sox6_MA0515.1 8.976088188492186 - +chr1 69382811 69382820 Sox6_MA0515.1 10.170389017733260 - +chr1 69967377 69967386 Sox6_MA0515.1 10.055508765327689 - +chr1 70205058 70205067 Sox6_MA0515.1 7.583134816126838 - +chr1 70685632 70685641 Sox6_MA0515.1 7.785567452146807 + +chr1 71080749 71080758 Sox6_MA0515.1 9.998538796050955 - +chr1 74681283 74681292 Sox6_MA0515.1 9.172187451924213 + +chr1 74824833 74824842 Sox6_MA0515.1 7.799377051997000 - +chr1 75233157 75233166 Sox6_MA0515.1 7.686048420261400 + +chr1 75614748 75614757 Sox6_MA0515.1 7.524086753689637 + +chr1 75745511 75745520 Sox6_MA0515.1 9.146386789504520 + +chr1 75785027 75785036 Sox6_MA0515.1 8.104431606125290 + +chr1 76154619 76154628 Sox6_MA0515.1 8.453239777823763 + +chr1 76425520 76425529 Sox6_MA0515.1 9.693484241922665 + +chr1 78061157 78061166 Sox6_MA0515.1 9.649092227734808 + +chr1 78142919 78142928 Sox6_MA0515.1 9.998538796050955 - +chr1 78277450 78277459 Sox6_MA0515.1 9.750454211199399 + +chr1 78281721 78281730 Sox6_MA0515.1 9.534211975329237 - +chr1 78281835 78281844 Sox6_MA0515.1 9.693484241922665 - +chr1 78650011 78650020 Sox6_MA0515.1 7.799377051997000 - +chr1 78650066 78650075 Sox6_MA0515.1 10.170389017733260 + +chr1 79041011 79041020 Sox6_MA0515.1 8.511761367770468 - +chr1 79193537 79193546 Sox6_MA0515.1 9.089416820227786 - +chr1 79711601 79711610 Sox6_MA0515.1 9.344037673606518 - +chr1 80640202 80640211 Sox6_MA0515.1 10.774456439428139 - +chr1 81505847 81505856 Sox6_MA0515.1 7.932581384442984 + +chr1 81548711 81548720 Sox6_MA0515.1 9.752005831869370 + +chr1 81549310 81549319 Sox6_MA0515.1 10.170389017733260 - +chr1 83131581 83131590 Sox6_MA0515.1 8.561485095523992 - +chr1 83500941 83500950 Sox6_MA0515.1 7.799377051997000 - +chr1 83999249 83999258 Sox6_MA0515.1 9.477242006052503 - +chr1 84862557 84862566 Sox6_MA0515.1 9.465275357781492 - +chr1 84862992 84863001 Sox6_MA0515.1 10.170389017733260 - +chr1 85298246 85298255 Sox6_MA0515.1 7.932581384442985 - +chr1 85308447 85308456 Sox6_MA0515.1 10.774456439428139 + +chr1 85335206 85335215 Sox6_MA0515.1 9.998538796050955 - +chr1 85464561 85464570 Sox6_MA0515.1 7.480512898018517 - +chr1 85708084 85708093 Sox6_MA0515.1 7.670687199741236 + +chr1 87328355 87328364 Sox6_MA0515.1 9.883658543645383 + +chr1 87588159 87588168 Sox6_MA0515.1 8.447292015309307 - +chr1 87813761 87813770 Sox6_MA0515.1 10.055508765327689 + +chr1 88180639 88180648 Sox6_MA0515.1 10.055508765327689 + +chr1 88891336 88891345 Sox6_MA0515.1 9.362361753646931 + +chr1 89363790 89363799 Sox6_MA0515.1 7.989551353719718 - +chr1 89524566 89524575 Sox6_MA0515.1 8.626641620176040 + +chr1 89781237 89781246 Sox6_MA0515.1 8.536648806137864 + +chr1 89844138 89844147 Sox6_MA0515.1 8.568120030229334 + +chr1 89995366 89995375 Sox6_MA0515.1 8.976088188492186 + +chr1 90510055 90510064 Sox6_MA0515.1 8.561485095523992 + +chr1 92299389 92299398 Sox6_MA0515.1 9.534211975329237 - +chr1 92537325 92537334 Sox6_MA0515.1 9.261267041910092 - +chr1 92584717 92584726 Sox6_MA0515.1 7.670687199741234 - +chr1 92785522 92785531 Sox6_MA0515.1 7.799377051997000 - +chr1 92951227 92951236 Sox6_MA0515.1 9.649092227734808 - +chr1 93179764 93179773 Sox6_MA0515.1 8.739970251911640 - +chr1 93716153 93716162 Sox6_MA0515.1 7.524086753689636 - +chr1 93879294 93879303 Sox6_MA0515.1 9.534211975329237 - +chr1 93909449 93909458 Sox6_MA0515.1 9.750454211199397 - +chr1 94854513 94854522 Sox6_MA0515.1 8.511761367770468 - +chr1 94926628 94926637 Sox6_MA0515.1 8.454791398493734 - +chr1 96722493 96722502 Sox6_MA0515.1 10.170389017733260 + +chr1 97011186 97011195 Sox6_MA0515.1 10.170389017733260 - +chr1 97848779 97848788 Sox6_MA0515.1 9.998538796050955 - +chr1 97848799 97848808 Sox6_MA0515.1 9.865334463604970 - +chr1 98054458 98054467 Sox6_MA0515.1 7.729895961878828 - +chr1 98871245 98871254 Sox6_MA0515.1 9.998538796050955 + +chr1 99180606 99180615 Sox6_MA0515.1 7.583134816126838 - +chr1 99750022 99750031 Sox6_MA0515.1 7.799377051997000 + +chr1 99752049 99752058 Sox6_MA0515.1 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Sox6_MA0515.1 9.344037673606518 + +chr1 103327194 103327203 Sox6_MA0515.1 10.138279397024116 + +chr1 104593561 104593570 Sox6_MA0515.1 8.447292015309307 - +chr1 104878795 104878804 Sox6_MA0515.1 8.219083131168134 - +chr1 105137603 105137612 Sox6_MA0515.1 9.534211975329237 + +chr1 106996368 106996377 Sox6_MA0515.1 9.344037673606518 + +chr1 107499566 107499575 Sox6_MA0515.1 8.104431606125290 + +chr1 107777470 107777479 Sox6_MA0515.1 7.615015709473257 + +chr1 107777920 107777929 Sox6_MA0515.1 8.568120030229334 + +chr1 107935671 107935680 Sox6_MA0515.1 7.900471763733839 - +chr1 108200683 108200692 Sox6_MA0515.1 9.115828789465347 + +chr1 108661036 108661045 Sox6_MA0515.1 9.147938410174492 - +chr1 108877348 108877357 Sox6_MA0515.1 10.170389017733260 + +chr1 109484199 109484208 Sox6_MA0515.1 8.752346569437597 - +chr1 110872964 110872973 Sox6_MA0515.1 7.583134816126837 + +chr1 111220018 111220027 Sox6_MA0515.1 9.033058157768920 - +chr1 113783877 113783886 Sox6_MA0515.1 7.932581384442984 + 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150611833 150611842 Sox6_MA0515.1 8.104431606125290 + +chr1 151156523 151156532 Sox6_MA0515.1 10.055508765327689 + +chr1 151189931 151189940 Sox6_MA0515.1 7.556494119526551 + +chr1 151984699 151984708 Sox6_MA0515.1 7.842537421423541 + +chr1 154791520 154791529 Sox6_MA0515.1 7.799377051997000 - +chr1 155946644 155946653 Sox6_MA0515.1 10.170389017733260 + +chr1 156054152 156054161 Sox6_MA0515.1 9.362361753646930 - +chr1 156456971 156456980 Sox6_MA0515.1 10.138279397024116 + +chr1 157512142 157512151 Sox6_MA0515.1 7.684496799591427 - +chr1 157512603 157512612 Sox6_MA0515.1 8.104431606125290 - +chr1 158830260 158830269 Sox6_MA0515.1 9.344037673606518 - +chr1 159068535 159068544 Sox6_MA0515.1 8.974536567822213 - +chr1 159839301 159839310 Sox6_MA0515.1 9.033058157768920 - +chr1 159923522 159923531 Sox6_MA0515.1 10.055508765327689 - +chr1 160262886 160262895 Sox6_MA0515.1 8.626641620176040 + +chr1 161021061 161021070 Sox6_MA0515.1 9.362361753646931 + +chr1 161045740 161045749 Sox6_MA0515.1 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169012714 Sox6_MA0515.1 8.104431606125290 - +chr1 169367707 169367716 Sox6_MA0515.1 10.138279397024116 + +chr1 169586707 169586716 Sox6_MA0515.1 8.943978567783040 - +chr1 169594774 169594783 Sox6_MA0515.1 8.446604843118418 - +chr1 169681158 169681167 Sox6_MA0515.1 10.055508765327689 + +chr1 169794606 169794615 Sox6_MA0515.1 8.568120030229334 + +chr1 170214634 170214643 Sox6_MA0515.1 8.187202237821717 - +chr1 170531957 170531966 Sox6_MA0515.1 9.344037673606518 - +chr1 170882023 170882032 Sox6_MA0515.1 9.261267041910092 - +chr1 170932387 170932396 Sox6_MA0515.1 9.750454211199399 + +chr1 171485337 171485346 Sox6_MA0515.1 8.861207936086615 + +chr1 171615388 171615397 Sox6_MA0515.1 9.146386789504520 - +chr1 171781326 171781335 Sox6_MA0515.1 9.033058157768920 - +chr1 172342825 172342834 Sox6_MA0515.1 8.187202237821717 + +chr1 172342850 172342859 Sox6_MA0515.1 8.974536567822215 + +chr1 172343531 172343540 Sox6_MA0515.1 8.339911146088161 - +chr1 172358299 172358308 Sox6_MA0515.1 9.580155610187065 - +chr1 172639307 172639316 Sox6_MA0515.1 7.842537421423541 + +chr1 173213248 173213257 Sox6_MA0515.1 7.932581384442984 + +chr1 173222918 173222927 Sox6_MA0515.1 8.637466317032025 - +chr1 173355518 173355527 Sox6_MA0515.1 7.537482867295251 + +chr1 173715305 173715314 Sox6_MA0515.1 8.861207936086615 + +chr1 173867905 173867914 Sox6_MA0515.1 8.637466317032025 - +chr1 174005201 174005210 Sox6_MA0515.1 8.739970251911640 - +chr1 174022026 174022035 Sox6_MA0515.1 8.015352016139412 + +chr1 174815338 174815347 Sox6_MA0515.1 7.670687199741234 - +chr1 175390278 175390287 Sox6_MA0515.1 7.817701132037413 + +chr1 175600803 175600812 Sox6_MA0515.1 9.865334463604970 - +chr1 175600836 175600845 Sox6_MA0515.1 9.147938410174492 - +chr1 178100679 178100688 Sox6_MA0515.1 9.649092227734808 + +chr1 178579773 178579782 Sox6_MA0515.1 7.686048420261400 - +chr1 178659824 178659833 Sox6_MA0515.1 9.261267041910092 - +chr1 179129712 179129721 Sox6_MA0515.1 7.932581384442984 + +chr1 179129937 179129946 Sox6_MA0515.1 8.104431606125290 + +chr1 179954164 179954173 Sox6_MA0515.1 8.974536567822213 - +chr1 181022188 181022197 Sox6_MA0515.1 8.274754621436113 - +chr1 181033714 181033723 Sox6_MA0515.1 8.739970251911640 + +chr1 181430265 181430274 Sox6_MA0515.1 7.670687199741234 - +chr1 181430604 181430613 Sox6_MA0515.1 9.998538796050955 - +chr1 181514535 181514544 Sox6_MA0515.1 10.055508765327689 + +chr1 182391105 182391114 Sox6_MA0515.1 9.184563769450170 + +chr1 182588797 182588806 Sox6_MA0515.1 7.957417673829113 - +chr1 182615594 182615603 Sox6_MA0515.1 8.453239777823761 - +chr1 182616126 182616135 Sox6_MA0515.1 9.998538796050955 - +chr1 183071219 183071228 Sox6_MA0515.1 9.750454211199397 - +chr1 183071392 183071401 Sox6_MA0515.1 9.261267041910092 + +chr1 183195169 183195178 Sox6_MA0515.1 8.332411762903735 + +chr1 183481222 183481231 Sox6_MA0515.1 9.865334463604970 + +chr1 183590046 183590055 Sox6_MA0515.1 7.932581384442984 + +chr1 183957046 183957055 Sox6_MA0515.1 9.966429175341808 - +chr1 184036809 184036818 Sox6_MA0515.1 8.339911146088161 - +chr1 184491834 184491843 Sox6_MA0515.1 7.932581384442985 - +chr1 184649870 184649879 Sox6_MA0515.1 9.229157421200947 + +chr1 184867547 184867556 Sox6_MA0515.1 10.487725965340260 - +chr1 185045845 185045854 Sox6_MA0515.1 9.172187451924213 + +chr1 185157059 185157068 Sox6_MA0515.1 7.671374371932123 - +chr1 185157679 185157688 Sox6_MA0515.1 10.170389017733260 + diff --git a/demo/known_tfbs_chr1_hg38/Spz1_MA0111.1.bed b/demo/known_tfbs_chr1_hg38/Spz1_MA0111.1.bed new file mode 100644 index 0000000..a0be89a --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/Spz1_MA0111.1.bed @@ -0,0 +1,237 @@ +chr1 1116022 1116032 Spz1_MA0111.1 7.866079018431943 - +chr1 1692924 1692934 Spz1_MA0111.1 8.376908530922627 + +chr1 1746203 1746213 Spz1_MA0111.1 8.376908530922627 + +chr1 2195030 2195040 Spz1_MA0111.1 7.866076240692744 - +chr1 2548631 2548641 Spz1_MA0111.1 7.565979703612067 - +chr1 6027047 6027057 Spz1_MA0111.1 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7.175868217899701 - +chr1 167540150 167540159 TBX21_MA0690.1 7.363455594434423 + +chr1 167676448 167676457 TBX21_MA0690.1 8.688086317309059 - +chr1 168179337 168179346 TBX21_MA0690.1 6.993254045494019 - +chr1 168226637 168226646 TBX21_MA0690.1 7.368557198474999 + +chr1 168466663 168466672 TBX21_MA0690.1 7.396188390378196 + +chr1 169044781 169044790 TBX21_MA0690.1 7.645181234908683 + +chr1 169795709 169795718 TBX21_MA0690.1 7.859193742494158 + +chr1 172746028 172746037 TBX21_MA0690.1 12.172241303884270 - +chr1 173355882 173355891 TBX21_MA0690.1 7.592803174461188 + +chr1 174799981 174799990 TBX21_MA0690.1 7.140077556590589 - +chr1 174874617 174874626 TBX21_MA0690.1 7.859193742494158 + +chr1 175029721 175029730 TBX21_MA0690.1 7.538307041623057 + +chr1 175192481 175192490 TBX21_MA0690.1 7.292428984635009 + +chr1 175209768 175209777 TBX21_MA0690.1 7.645181234908685 - +chr1 175599043 175599052 TBX21_MA0690.1 6.961083810968486 - +chr1 175599368 175599377 TBX21_MA0690.1 8.633984776118949 - 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b/demo/known_tfbs_chr1_hg38/TBX2_MA0688.1.bed @@ -0,0 +1,119 @@ +chr1 1400059 1400069 TBX2_MA0688.1 8.076209978313765 + +chr1 1678015 1678025 TBX2_MA0688.1 8.545448265353800 - +chr1 3491611 3491621 TBX2_MA0688.1 8.447183964458816 + +chr1 7961242 7961252 TBX2_MA0688.1 7.826812741877151 + +chr1 8167431 8167441 TBX2_MA0688.1 8.096886460405765 + +chr1 8182969 8182979 TBX2_MA0688.1 9.025807689117865 + +chr1 9629695 9629705 TBX2_MA0688.1 9.195269048131092 + +chr1 9687693 9687703 TBX2_MA0688.1 8.844971544078041 + +chr1 9689412 9689422 TBX2_MA0688.1 7.632948179634671 + +chr1 16514031 16514041 TBX2_MA0688.1 9.196477030014977 - +chr1 18927242 18927252 TBX2_MA0688.1 7.453371889489202 + +chr1 19477480 19477490 TBX2_MA0688.1 8.140136741334590 - +chr1 21762514 21762524 TBX2_MA0688.1 7.575409429361908 + +chr1 24929823 24929833 TBX2_MA0688.1 9.773892772790141 + +chr1 25820027 25820037 TBX2_MA0688.1 8.353586346491223 + +chr1 26378579 26378589 TBX2_MA0688.1 8.591466130862749 - +chr1 26787468 26787478 TBX2_MA0688.1 8.397292387218334 - +chr1 27830593 27830603 TBX2_MA0688.1 9.788915422246454 - +chr1 32981160 32981170 TBX2_MA0688.1 7.774962621832175 + +chr1 33350351 33350361 TBX2_MA0688.1 7.856555140560084 - +chr1 33903165 33903175 TBX2_MA0688.1 8.239607360979777 - +chr1 35641780 35641790 TBX2_MA0688.1 8.412315036674649 + +chr1 38028220 38028230 TBX2_MA0688.1 7.450963275762604 + +chr1 38990997 38991007 TBX2_MA0688.1 8.018692785124681 + +chr1 39996081 39996091 TBX2_MA0688.1 8.529093915159013 + +chr1 40386073 40386083 TBX2_MA0688.1 7.487937908671612 - +chr1 40709298 40709308 TBX2_MA0688.1 7.930660820071387 + +chr1 41728837 41728847 TBX2_MA0688.1 8.783651500950304 + +chr1 42463167 42463177 TBX2_MA0688.1 7.713496544697486 + +chr1 42924332 42924342 TBX2_MA0688.1 7.619801142091982 + +chr1 43358588 43358598 TBX2_MA0688.1 7.942881822540527 + +chr1 44730998 44731008 TBX2_MA0688.1 9.124071990012848 - +chr1 44819533 44819543 TBX2_MA0688.1 7.795938222696310 + +chr1 48794160 48794170 TBX2_MA0688.1 7.562880621565613 + +chr1 52697668 52697678 TBX2_MA0688.1 7.521311174609932 - +chr1 56135483 56135493 TBX2_MA0688.1 8.923247335472203 - +chr1 56525720 56525730 TBX2_MA0688.1 8.108161968932929 - +chr1 58573600 58573610 TBX2_MA0688.1 8.606534875825842 + +chr1 58573871 58573881 TBX2_MA0688.1 7.913387726360422 + +chr1 58816082 58816092 TBX2_MA0688.1 8.015574471155279 - +chr1 58903545 58903555 TBX2_MA0688.1 7.418326623905661 + +chr1 59046758 59046768 TBX2_MA0688.1 8.959286101084370 + +chr1 59147068 59147078 TBX2_MA0688.1 7.926622698629141 + +chr1 59947691 59947701 TBX2_MA0688.1 10.458762858580455 + +chr1 61453429 61453439 TBX2_MA0688.1 7.574365730834535 + +chr1 62800559 62800569 TBX2_MA0688.1 8.259235816624848 - +chr1 63893224 63893234 TBX2_MA0688.1 8.421225414647516 + +chr1 64957031 64957041 TBX2_MA0688.1 10.439134402935382 + +chr1 65812409 65812419 TBX2_MA0688.1 7.774962621832175 - +chr1 65895107 65895117 TBX2_MA0688.1 8.768628851493990 + +chr1 66247963 66247973 TBX2_MA0688.1 7.855757878893234 - +chr1 66350370 66350380 TBX2_MA0688.1 10.351118003912532 - +chr1 67054188 67054198 TBX2_MA0688.1 8.002965391213191 - +chr1 67171806 67171816 TBX2_MA0688.1 7.904153794287867 - +chr1 67333298 67333308 TBX2_MA0688.1 10.458762858580455 + +chr1 67333313 67333323 TBX2_MA0688.1 8.064725601986559 - +chr1 70221248 70221258 TBX2_MA0688.1 7.893847205441381 - +chr1 70221600 70221610 TBX2_MA0688.1 7.677404779313700 + +chr1 70504439 70504449 TBX2_MA0688.1 8.335972344090598 - +chr1 70505008 70505018 TBX2_MA0688.1 9.054214032685548 - +chr1 73573284 73573294 TBX2_MA0688.1 9.588010270783942 - +chr1 73821655 73821665 TBX2_MA0688.1 9.521488682750446 + +chr1 74579586 74579596 TBX2_MA0688.1 10.806061917781447 + +chr1 75724963 75724973 TBX2_MA0688.1 8.421225414647516 - +chr1 75784747 75784757 TBX2_MA0688.1 8.195150761300747 - +chr1 75786411 75786421 TBX2_MA0688.1 7.649207303546057 + +chr1 75786581 75786591 TBX2_MA0688.1 8.297791611868277 + +chr1 75937646 75937656 TBX2_MA0688.1 7.760622724881832 + +chr1 75991533 75991543 TBX2_MA0688.1 8.801600341904097 - +chr1 76074414 76074424 TBX2_MA0688.1 9.588010270783942 + +chr1 76330985 76330995 TBX2_MA0688.1 8.423988743113448 + +chr1 76425510 76425520 TBX2_MA0688.1 7.540994128029897 + +chr1 76939494 76939504 TBX2_MA0688.1 7.558608130430525 - +chr1 77779560 77779570 TBX2_MA0688.1 8.076209978313765 - +chr1 77978394 77978404 TBX2_MA0688.1 8.136358711758856 + +chr1 77979264 77979274 TBX2_MA0688.1 7.694693439055110 - +chr1 78145403 78145413 TBX2_MA0688.1 8.412315036674649 - +chr1 79742059 79742069 TBX2_MA0688.1 7.801114745808703 + +chr1 81549427 81549437 TBX2_MA0688.1 7.774962621832175 - +chr1 82153196 82153206 TBX2_MA0688.1 7.557922458427559 + +chr1 82979715 82979725 TBX2_MA0688.1 7.852576776486606 - +chr1 83131320 83131330 TBX2_MA0688.1 7.747471604441040 - +chr1 84599908 84599918 TBX2_MA0688.1 8.353586346491223 + +chr1 84988974 84988984 TBX2_MA0688.1 7.646099300075463 - +chr1 85298395 85298405 TBX2_MA0688.1 9.896560276914379 + +chr1 85464555 85464565 TBX2_MA0688.1 9.494089201591368 + +chr1 88192051 88192061 TBX2_MA0688.1 9.686274571678926 + +chr1 88700980 88700990 TBX2_MA0688.1 8.101182256451530 - +chr1 88868439 88868449 TBX2_MA0688.1 8.773403599078170 - +chr1 88868504 88868514 TBX2_MA0688.1 9.054214032685548 - +chr1 88868672 88868682 TBX2_MA0688.1 7.809216863861479 - +chr1 89201410 89201420 TBX2_MA0688.1 8.705989555669118 + +chr1 89201430 89201440 TBX2_MA0688.1 9.108460630992127 + +chr1 89201556 89201566 TBX2_MA0688.1 7.534683878739688 - +chr1 89363824 89363834 TBX2_MA0688.1 8.821228797549169 + +chr1 89612038 89612048 TBX2_MA0688.1 7.485445984689715 - +chr1 89694095 89694105 TBX2_MA0688.1 9.280963047659716 + +chr1 89843199 89843209 TBX2_MA0688.1 8.005601615287267 - +chr1 91055288 91055298 TBX2_MA0688.1 7.767741479870385 + +chr1 91805020 91805030 TBX2_MA0688.1 8.363317327474780 - +chr1 92486726 92486736 TBX2_MA0688.1 7.494669316489712 - +chr1 92538310 92538320 TBX2_MA0688.1 7.529538244273879 - +chr1 92831979 92831989 TBX2_MA0688.1 8.879332273692331 - +chr1 93180152 93180162 TBX2_MA0688.1 10.336095354456218 + +chr1 95095820 95095830 TBX2_MA0688.1 7.923782249932940 - +chr1 95117170 95117180 TBX2_MA0688.1 8.488825280295218 + +chr1 97506046 97506056 TBX2_MA0688.1 7.523431795951226 - +chr1 99784825 99784835 TBX2_MA0688.1 9.110924952470162 - +chr1 101052110 101052120 TBX2_MA0688.1 8.237708043195616 + +chr1 101309731 101309741 TBX2_MA0688.1 8.879332273692331 - +chr1 101407785 101407795 TBX2_MA0688.1 9.195269048131092 + +chr1 101410423 101410433 TBX2_MA0688.1 9.588010270783942 + +chr1 101410431 101410441 TBX2_MA0688.1 9.588010270783942 + +chr1 101438476 101438486 TBX2_MA0688.1 7.567895314295572 + +chr1 103784193 103784203 TBX2_MA0688.1 10.011083701720748 - +chr1 104746870 104746880 TBX2_MA0688.1 8.208301881741539 - +chr1 107016249 107016259 TBX2_MA0688.1 8.013165857428680 + +chr1 107132757 107132767 TBX2_MA0688.1 8.915465476932320 - +chr1 107499858 107499868 TBX2_MA0688.1 7.548710655769008 + diff --git a/demo/known_tfbs_chr1_hg38/TBX4_MA0806.1.bed b/demo/known_tfbs_chr1_hg38/TBX4_MA0806.1.bed new file mode 100644 index 0000000..ff716de --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/TBX4_MA0806.1.bed @@ -0,0 +1,236 @@ +chr1 1630268 1630275 TBX4_MA0806.1 7.431130426154978 - +chr1 1678017 1678024 TBX4_MA0806.1 9.501070953000291 - +chr1 2684190 2684197 TBX4_MA0806.1 7.431130426154978 - +chr1 3491612 3491619 TBX4_MA0806.1 7.701182337135766 + +chr1 3665869 3665876 TBX4_MA0806.1 9.501070953000291 - +chr1 3772840 3772847 TBX4_MA0806.1 7.626092906639199 + +chr1 7961224 7961231 TBX4_MA0806.1 7.431130426154978 - +chr1 7961243 7961250 TBX4_MA0806.1 7.431130426154978 + +chr1 8182571 8182578 TBX4_MA0806.1 7.701182337135766 + +chr1 8182970 8182977 TBX4_MA0806.1 7.701182337135766 + +chr1 9629696 9629703 TBX4_MA0806.1 9.501070953000291 + +chr1 9687694 9687701 TBX4_MA0806.1 7.431130426154978 + +chr1 9689413 9689420 TBX4_MA0806.1 7.431130426154978 + +chr1 11805980 11805987 TBX4_MA0806.1 8.261104550921779 + +chr1 12229755 12229762 TBX4_MA0806.1 7.626092906639199 - +chr1 16514033 16514040 TBX4_MA0806.1 8.701854165060350 - +chr1 17536214 17536221 TBX4_MA0806.1 9.501070953000291 - +chr1 22053055 22053062 TBX4_MA0806.1 7.431130426154978 - +chr1 24848360 24848367 TBX4_MA0806.1 7.431130426154978 - +chr1 24848401 24848408 TBX4_MA0806.1 7.431130426154978 + +chr1 24929824 24929831 TBX4_MA0806.1 9.501070953000291 + +chr1 26378581 26378588 TBX4_MA0806.1 8.261104550921777 - +chr1 26787470 26787477 TBX4_MA0806.1 7.431130426154978 - +chr1 26787794 26787801 TBX4_MA0806.1 8.261104550921779 + +chr1 27234739 27234746 TBX4_MA0806.1 7.431130426154978 + +chr1 27626615 27626622 TBX4_MA0806.1 7.431130426154978 - +chr1 27659833 27659840 TBX4_MA0806.1 7.431130426154978 - +chr1 27830595 27830602 TBX4_MA0806.1 8.261104550921777 - +chr1 28506087 28506094 TBX4_MA0806.1 7.701182337135766 + +chr1 28506103 28506110 TBX4_MA0806.1 7.701182337135766 + +chr1 28669836 28669843 TBX4_MA0806.1 8.701854165060350 + +chr1 28736630 28736637 TBX4_MA0806.1 8.701854165060350 + +chr1 32335901 32335908 TBX4_MA0806.1 7.626092906639199 + +chr1 33350353 33350360 TBX4_MA0806.1 9.501070953000291 - +chr1 37554110 37554117 TBX4_MA0806.1 7.626092906639199 + +chr1 38990998 38991005 TBX4_MA0806.1 7.626092906639199 + +chr1 39491474 39491481 TBX4_MA0806.1 7.626092906639199 - +chr1 39996082 39996089 TBX4_MA0806.1 8.701854165060350 + +chr1 41728838 41728845 TBX4_MA0806.1 8.261104550921779 + +chr1 41751653 41751660 TBX4_MA0806.1 7.701182337135766 + +chr1 41752059 41752066 TBX4_MA0806.1 7.431130426154978 + +chr1 42682507 42682514 TBX4_MA0806.1 7.431130426154978 - +chr1 42924333 42924340 TBX4_MA0806.1 7.431130426154978 + +chr1 43172043 43172050 TBX4_MA0806.1 8.261104550921777 - +chr1 43358589 43358596 TBX4_MA0806.1 7.701182337135766 + +chr1 44731000 44731007 TBX4_MA0806.1 9.501070953000291 - +chr1 44819534 44819541 TBX4_MA0806.1 8.261104550921779 + +chr1 48498509 48498516 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187051862 TBX4_MA0806.1 8.701854165060350 + +chr1 187986994 187987001 TBX4_MA0806.1 7.701182337135765 - +chr1 189859884 189859891 TBX4_MA0806.1 9.501070953000291 - +chr1 192531081 192531088 TBX4_MA0806.1 8.701854165060350 - +chr1 192551656 192551663 TBX4_MA0806.1 9.501070953000291 - diff --git a/demo/known_tfbs_chr1_hg38/TBX5_MA0807.1.bed b/demo/known_tfbs_chr1_hg38/TBX5_MA0807.1.bed new file mode 100644 index 0000000..ce99632 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/TBX5_MA0807.1.bed @@ -0,0 +1,237 @@ +chr1 1630268 1630275 TBX5_MA0807.1 7.540991331424536 - +chr1 1658884 1658891 TBX5_MA0807.1 7.363898600970262 - +chr1 1678017 1678024 TBX5_MA0807.1 9.025037828737704 - +chr1 1724228 1724235 TBX5_MA0807.1 7.363898600970262 - +chr1 2547151 2547158 TBX5_MA0807.1 7.171615066900483 + +chr1 2656009 2656016 TBX5_MA0807.1 7.363898600970262 - +chr1 2683908 2683915 TBX5_MA0807.1 7.363898600970262 - +chr1 2684190 2684197 TBX5_MA0807.1 7.540991331424536 - +chr1 3665869 3665876 TBX5_MA0807.1 9.025037828737704 - +chr1 3910751 3910758 TBX5_MA0807.1 7.171615066900483 - +chr1 6822621 6822628 TBX5_MA0807.1 7.363898600970262 - +chr1 7961224 7961231 TBX5_MA0807.1 7.540991331424536 - +chr1 7961243 7961250 TBX5_MA0807.1 7.540991331424536 + +chr1 8025947 8025954 TBX5_MA0807.1 7.363898600970262 - +chr1 8167545 8167552 TBX5_MA0807.1 7.171615066900483 - +chr1 9629696 9629703 TBX5_MA0807.1 9.025037828737704 + +chr1 9687694 9687701 TBX5_MA0807.1 7.540991331424536 + +chr1 9689413 9689420 TBX5_MA0807.1 7.540991331424536 + +chr1 9950958 9950965 TBX5_MA0807.1 7.171615066900483 - +chr1 10986012 10986019 TBX5_MA0807.1 7.171615066900483 - +chr1 11664164 11664171 TBX5_MA0807.1 7.363898600970261 + +chr1 11805980 11805987 TBX5_MA0807.1 7.951341928149389 + +chr1 16236454 16236461 TBX5_MA0807.1 7.363898600970261 + +chr1 16352981 16352988 TBX5_MA0807.1 7.171615066900483 - +chr1 16514033 16514040 TBX5_MA0807.1 8.345558305500663 - +chr1 17536214 17536221 TBX5_MA0807.1 9.025037828737704 - +chr1 18927243 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100351919 100351931 TEAD2_MA1121.1 7.529378209126756 - +chr1 100352760 100352772 TEAD2_MA1121.1 7.250258161023876 - +chr1 101052116 101052128 TEAD2_MA1121.1 7.567751612172351 + +chr1 101238491 101238503 TEAD2_MA1121.1 7.203442787631886 + +chr1 101357379 101357391 TEAD2_MA1121.1 8.260266327873028 + +chr1 101444651 101444663 TEAD2_MA1121.1 9.860451159574570 + +chr1 103525842 103525854 TEAD2_MA1121.1 7.694770321469269 - +chr1 104388198 104388210 TEAD2_MA1121.1 10.086470049882665 - +chr1 104388320 104388332 TEAD2_MA1121.1 8.795422907451330 + +chr1 104467911 104467923 TEAD2_MA1121.1 7.298006931970509 + +chr1 104468030 104468042 TEAD2_MA1121.1 7.772212651480471 + +chr1 104759938 104759950 TEAD2_MA1121.1 9.067356569788723 + +chr1 107016645 107016657 TEAD2_MA1121.1 7.602794895016491 - +chr1 107140555 107140567 TEAD2_MA1121.1 7.633195520954001 - +chr1 107459789 107459801 TEAD2_MA1121.1 8.729701432955016 - +chr1 107950354 107950366 TEAD2_MA1121.1 7.243882365060951 - +chr1 107963685 107963697 TEAD2_MA1121.1 7.740265851845006 - +chr1 109425786 109425798 TEAD2_MA1121.1 7.194061137568662 + +chr1 109985046 109985058 TEAD2_MA1121.1 7.568517155102111 - diff --git a/demo/known_tfbs_chr1_hg38/TEAD3_MA0808.1.bed b/demo/known_tfbs_chr1_hg38/TEAD3_MA0808.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/TEAD4_MA0809.1.bed b/demo/known_tfbs_chr1_hg38/TEAD4_MA0809.1.bed new file mode 100644 index 0000000..f561f74 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/TEAD4_MA0809.1.bed @@ -0,0 +1,117 @@ +chr1 790269 790278 TEAD4_MA0809.1 7.879359713459246 - +chr1 790349 790358 TEAD4_MA0809.1 7.879359713459246 - +chr1 790419 790428 TEAD4_MA0809.1 8.159519490186268 - +chr1 2586364 2586373 TEAD4_MA0809.1 7.695457209201066 + +chr1 8427539 8427548 TEAD4_MA0809.1 7.801761997189697 - +chr1 8525543 8525552 TEAD4_MA0809.1 8.176437200304642 + +chr1 9037469 9037478 TEAD4_MA0809.1 8.108918481160826 + +chr1 10430910 10430919 TEAD4_MA0809.1 8.301959082001526 + +chr1 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20633646 TFAP2A_MA0003.3 7.803405749046035 - +chr1 20633812 20633822 TFAP2A_MA0003.3 9.332626367442987 - +chr1 20786719 20786729 TFAP2A_MA0003.3 8.095935140273639 + +chr1 20787107 20787117 TFAP2A_MA0003.3 8.171828950962212 + +chr1 20787107 20787117 TFAP2A_MA0003.3 7.663361971423464 - +chr1 21176449 21176459 TFAP2A_MA0003.3 7.828175380326610 - +chr1 21176518 21176528 TFAP2A_MA0003.3 8.486365432372175 - +chr1 21176604 21176614 TFAP2A_MA0003.3 8.095935140273639 + +chr1 21176871 21176881 TFAP2A_MA0003.3 7.946142511004622 + +chr1 21293764 21293774 TFAP2A_MA0003.3 8.363644937881855 - +chr1 21345541 21345551 TFAP2A_MA0003.3 8.103350933157895 - +chr1 21345610 21345620 TFAP2A_MA0003.3 8.122571990263292 + +chr1 21345610 21345620 TFAP2A_MA0003.3 9.923176854894923 - +chr1 22452265 22452275 TFAP2A_MA0003.3 8.295506355387733 + +chr1 22452265 22452275 TFAP2A_MA0003.3 9.816783732103517 - +chr1 23019748 23019758 TFAP2A_MA0003.3 8.163925850675138 - +chr1 23019841 23019851 TFAP2A_MA0003.3 8.105287708629174 + +chr1 23019841 23019851 TFAP2A_MA0003.3 7.596820729090429 - +chr1 23019994 23020004 TFAP2A_MA0003.3 7.642147982484897 + +chr1 23368900 23368910 TFAP2A_MA0003.3 8.730166723248852 + +chr1 23368900 23368910 TFAP2A_MA0003.3 9.027906230427513 - +chr1 23484309 23484319 TFAP2A_MA0003.3 8.689677111848003 + +chr1 23539891 23539901 TFAP2A_MA0003.3 8.394416252900323 + +chr1 23539891 23539901 TFAP2A_MA0003.3 9.392656582471597 - +chr1 23691888 23691898 TFAP2A_MA0003.3 7.569467005266060 - +chr1 23743902 23743912 TFAP2A_MA0003.3 8.536579303006295 - +chr1 23800961 23800971 TFAP2A_MA0003.3 7.731184788229554 + +chr1 23867902 23867912 TFAP2A_MA0003.3 7.655458871136394 + +chr1 23868067 23868077 TFAP2A_MA0003.3 9.609054187185096 + +chr1 23868067 23868077 TFAP2A_MA0003.3 8.618662810919480 - +chr1 23959361 23959371 TFAP2A_MA0003.3 7.490427606299025 + +chr1 23959361 23959371 TFAP2A_MA0003.3 8.278222073753614 - +chr1 23959703 23959713 TFAP2A_MA0003.3 8.163925850675138 + +chr1 23980143 23980153 TFAP2A_MA0003.3 8.246009358588324 + +chr1 24392124 24392134 TFAP2A_MA0003.3 8.167485429957623 + +chr1 24392124 24392134 TFAP2A_MA0003.3 9.858377628615852 - +chr1 24642844 24642854 TFAP2A_MA0003.3 8.415727940336875 + +chr1 24745317 24745327 TFAP2A_MA0003.3 8.824159387904242 + +chr1 24745329 24745339 TFAP2A_MA0003.3 8.648083215335667 + +chr1 24848254 24848264 TFAP2A_MA0003.3 8.754476338127070 + +chr1 24930214 24930224 TFAP2A_MA0003.3 7.655458871136394 + +chr1 24930414 24930424 TFAP2A_MA0003.3 7.699531415879707 + +chr1 24930414 24930424 TFAP2A_MA0003.3 7.657473983135830 - +chr1 24930505 24930515 TFAP2A_MA0003.3 7.900091398037438 + +chr1 24930505 24930515 TFAP2A_MA0003.3 7.877672377126018 - +chr1 25022448 25022458 TFAP2A_MA0003.3 7.946142511004621 - +chr1 25338494 25338504 TFAP2A_MA0003.3 8.117988433158214 - +chr1 25430181 25430191 TFAP2A_MA0003.3 8.536579303006295 + +chr1 25430992 25431002 TFAP2A_MA0003.3 8.042697679112496 - +chr1 25549722 25549732 TFAP2A_MA0003.3 7.907260960798129 - +chr1 25616253 25616263 TFAP2A_MA0003.3 7.900091398037438 + +chr1 25616253 25616263 TFAP2A_MA0003.3 7.877672377126018 - +chr1 25859321 25859331 TFAP2A_MA0003.3 8.543748865766982 + +chr1 25859405 25859415 TFAP2A_MA0003.3 8.805159806874736 + +chr1 25859405 25859415 TFAP2A_MA0003.3 8.191104573424495 - +chr1 25859483 25859493 TFAP2A_MA0003.3 8.171828950962212 + +chr1 25859483 25859493 TFAP2A_MA0003.3 7.663361971423464 - +chr1 25905519 25905529 TFAP2A_MA0003.3 8.163925850675138 + +chr1 25906013 25906023 TFAP2A_MA0003.3 7.878858849074277 - +chr1 25998277 25998287 TFAP2A_MA0003.3 7.920699303985681 + +chr1 26111340 26111350 TFAP2A_MA0003.3 7.892623460797808 + +chr1 26111474 26111484 TFAP2A_MA0003.3 9.332626367442987 + +chr1 26111751 26111761 TFAP2A_MA0003.3 7.780194477626147 - +chr1 26170090 26170100 TFAP2A_MA0003.3 7.706947208763967 - +chr1 26336491 26336501 TFAP2A_MA0003.3 8.287563113706565 + +chr1 26472642 26472652 TFAP2A_MA0003.3 7.998894585837771 + +chr1 26472642 26472652 TFAP2A_MA0003.3 7.769755094214868 - +chr1 26620637 26620647 TFAP2A_MA0003.3 7.600554085972561 + +chr1 26695547 26695557 TFAP2A_MA0003.3 7.529552138052434 - +chr1 26788150 26788160 TFAP2A_MA0003.3 8.634358512984035 + +chr1 26788150 26788160 TFAP2A_MA0003.3 9.477931574507213 - +chr1 26826656 26826666 TFAP2A_MA0003.3 8.163925850675138 - +chr1 26865175 26865185 TFAP2A_MA0003.3 7.555702393542528 + +chr1 26890217 26890227 TFAP2A_MA0003.3 10.535355144985557 + +chr1 26890217 26890227 TFAP2A_MA0003.3 10.026888165446811 - +chr1 27234478 27234488 TFAP2A_MA0003.3 8.095935140273639 + +chr1 27322459 27322469 TFAP2A_MA0003.3 8.626455412696963 + +chr1 27568756 27568766 TFAP2A_MA0003.3 8.602145797818743 + +chr1 27568756 27568766 TFAP2A_MA0003.3 9.069500126939850 - +chr1 27725661 27725671 TFAP2A_MA0003.3 9.542730800786284 + +chr1 27725661 27725671 TFAP2A_MA0003.3 8.589445073289705 - +chr1 27773054 27773064 TFAP2A_MA0003.3 7.642147982484897 - +chr1 28144749 28144759 TFAP2A_MA0003.3 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32336074 TFAP2A_MA0003.3 8.213422847474547 + +chr1 32336064 32336074 TFAP2A_MA0003.3 7.535341045993354 - +chr1 32394486 32394496 TFAP2A_MA0003.3 7.936304556321090 + +chr1 32500564 32500574 TFAP2A_MA0003.3 8.754476338127070 - +chr1 32500599 32500609 TFAP2A_MA0003.3 8.125891533445287 + +chr1 32500599 32500609 TFAP2A_MA0003.3 9.986398554045962 - +chr1 32817389 32817399 TFAP2A_MA0003.3 8.103350933157895 + +chr1 33180812 33180822 TFAP2A_MA0003.3 7.584948833637152 + +chr1 33181230 33181240 TFAP2A_MA0003.3 8.791686572240721 - +chr1 33256628 33256638 TFAP2A_MA0003.3 7.508438364676779 - +chr1 33256664 33256674 TFAP2A_MA0003.3 7.687671586301684 - +chr1 33256807 33256817 TFAP2A_MA0003.3 8.278222073753614 + +chr1 33256807 33256817 TFAP2A_MA0003.3 7.490427606299025 - +chr1 33349721 33349731 TFAP2A_MA0003.3 7.559650660871573 - +chr1 33349932 33349942 TFAP2A_MA0003.3 8.648083215335667 - +chr1 33350061 33350071 TFAP2A_MA0003.3 7.704955867935800 + +chr1 33350061 33350071 TFAP2A_MA0003.3 8.043808025532101 - +chr1 33350184 33350194 TFAP2A_MA0003.3 7.832593245769201 - +chr1 33350369 33350379 TFAP2A_MA0003.3 8.824159387904242 - +chr1 33472544 33472554 TFAP2A_MA0003.3 8.648083215335667 + +chr1 34985120 34985130 TFAP2A_MA0003.3 8.163925850675138 - +chr1 35192480 35192490 TFAP2A_MA0003.3 8.504366587841004 - +chr1 35192662 35192672 TFAP2A_MA0003.3 7.494965130042764 - +chr1 35557190 35557200 TFAP2A_MA0003.3 8.163925850675138 + +chr1 35557823 35557833 TFAP2A_MA0003.3 7.532021502811361 + +chr1 35557823 35557833 TFAP2A_MA0003.3 8.150201148323507 - +chr1 35718680 35718690 TFAP2A_MA0003.3 8.278222073753614 + +chr1 35718680 35718690 TFAP2A_MA0003.3 7.490427606299025 - +chr1 35769632 35769642 TFAP2A_MA0003.3 7.651075208737707 + +chr1 35770145 35770155 TFAP2A_MA0003.3 8.150614962023646 - +chr1 35931155 35931165 TFAP2A_MA0003.3 7.655458871136392 - +chr1 36223887 36223897 TFAP2A_MA0003.3 9.114843027772469 - +chr1 37514519 37514529 TFAP2A_MA0003.3 8.105287708629174 + +chr1 37514519 37514529 TFAP2A_MA0003.3 7.596820729090429 - +chr1 37931626 37931636 TFAP2A_MA0003.3 8.163925850675138 + +chr1 37931694 37931704 TFAP2A_MA0003.3 7.772778684741890 - +chr1 38012701 38012711 TFAP2A_MA0003.3 7.603163862799445 - +chr1 38028131 38028141 TFAP2A_MA0003.3 9.973804539229180 + +chr1 38028131 38028141 TFAP2A_MA0003.3 8.282912340570951 - +chr1 38046689 38046699 TFAP2A_MA0003.3 8.353926641499474 + +chr1 38859749 38859759 TFAP2A_MA0003.3 9.012833567379751 + +chr1 38991151 38991161 TFAP2A_MA0003.3 7.687671586301684 + +chr1 38991275 38991285 TFAP2A_MA0003.3 7.946142511004621 - +chr1 38991489 38991499 TFAP2A_MA0003.3 8.105287708629174 + +chr1 38991489 38991499 TFAP2A_MA0003.3 7.596820729090429 - +chr1 39491512 39491522 TFAP2A_MA0003.3 7.704955867935800 + +chr1 39491512 39491522 TFAP2A_MA0003.3 8.043808025532101 - +chr1 39576357 39576367 TFAP2A_MA0003.3 8.824159387904242 - +chr1 39576435 39576445 TFAP2A_MA0003.3 8.043808025532101 + +chr1 39576435 39576445 TFAP2A_MA0003.3 7.704955867935800 - +chr1 39576827 39576837 TFAP2A_MA0003.3 8.171828950962212 + +chr1 39576827 39576837 TFAP2A_MA0003.3 7.663361971423464 - +chr1 39576898 39576908 TFAP2A_MA0003.3 7.490427606299025 + +chr1 39576898 39576908 TFAP2A_MA0003.3 8.278222073753614 - +chr1 39788968 39788978 TFAP2A_MA0003.3 7.559650660871573 - +chr1 40040666 40040676 TFAP2A_MA0003.3 7.644757759311781 - +chr1 40161333 40161343 TFAP2A_MA0003.3 7.828175380326610 - +chr1 40450233 40450243 TFAP2A_MA0003.3 7.655458871136394 + +chr1 40450309 40450319 TFAP2A_MA0003.3 8.163925850675138 - +chr1 40450689 40450699 TFAP2A_MA0003.3 7.622986055472873 + +chr1 40477407 40477417 TFAP2A_MA0003.3 8.418725867778541 - +chr1 40665514 40665524 TFAP2A_MA0003.3 8.040488482350106 + +chr1 40665514 40665524 TFAP2A_MA0003.3 7.641734168784759 - +chr1 40665723 40665733 TFAP2A_MA0003.3 9.012833567379751 - +chr1 40862529 40862539 TFAP2A_MA0003.3 9.986398554045962 + +chr1 40862529 40862539 TFAP2A_MA0003.3 8.125891533445287 - +chr1 40980309 40980319 TFAP2A_MA0003.3 7.704955867935800 + +chr1 40980309 40980319 TFAP2A_MA0003.3 8.043808025532101 - +chr1 41241591 41241601 TFAP2A_MA0003.3 7.738600581113811 - +chr1 41241995 41242005 TFAP2A_MA0003.3 7.998894585837771 + +chr1 41241995 41242005 TFAP2A_MA0003.3 7.769755094214868 - +chr1 41361366 41361376 TFAP2A_MA0003.3 8.246009358588324 - +chr1 41662339 41662349 TFAP2A_MA0003.3 7.731184788229554 - +chr1 41662495 41662505 TFAP2A_MA0003.3 7.687671586301684 - +chr1 41728412 41728422 TFAP2A_MA0003.3 9.124896822524569 - +chr1 42035938 42035948 TFAP2A_MA0003.3 9.332626367442987 + +chr1 42334772 42334782 TFAP2A_MA0003.3 8.109021065511309 - +chr1 42335091 42335101 TFAP2A_MA0003.3 8.035904925245031 + +chr1 42456787 42456797 TFAP2A_MA0003.3 7.644757759311781 + +chr1 42682373 42682383 TFAP2A_MA0003.3 8.132705551824671 - +chr1 42766671 42766681 TFAP2A_MA0003.3 8.952180313334349 + +chr1 42817241 42817251 TFAP2A_MA0003.3 7.508438364676779 + +chr1 42931907 42931917 TFAP2A_MA0003.3 7.721838041948612 + +chr1 42958201 42958211 TFAP2A_MA0003.3 8.035904925245031 - +chr1 42958522 42958532 TFAP2A_MA0003.3 8.171828950962212 + +chr1 42958522 42958532 TFAP2A_MA0003.3 7.663361971423464 - +chr1 42958964 42958974 TFAP2A_MA0003.3 7.514737221177243 - +chr1 43172669 43172679 TFAP2A_MA0003.3 8.163925850675138 - +chr1 43358482 43358492 TFAP2A_MA0003.3 8.181210132309257 + +chr1 43358521 43358531 TFAP2A_MA0003.3 8.069106198297682 - +chr1 43946409 43946419 TFAP2A_MA0003.3 8.677083097031222 + +chr1 43946715 43946725 TFAP2A_MA0003.3 9.460647292873098 - +chr1 43974679 43974689 TFAP2A_MA0003.3 7.495374034424355 - +chr1 44030119 44030129 TFAP2A_MA0003.3 7.490427606299025 + +chr1 44030119 44030129 TFAP2A_MA0003.3 8.278222073753614 - +chr1 44030308 44030318 TFAP2A_MA0003.3 8.163925850675138 + +chr1 44632084 44632094 TFAP2A_MA0003.3 8.035281886228237 + +chr1 44775794 44775804 TFAP2A_MA0003.3 7.527437945706283 - +chr1 45011020 45011030 TFAP2A_MA0003.3 8.543748865766986 - +chr1 45011040 45011050 TFAP2A_MA0003.3 9.332626367442987 + +chr1 45340360 45340370 TFAP2A_MA0003.3 8.824159387904242 - +chr1 45550740 45550750 TFAP2A_MA0003.3 8.730166723248852 + +chr1 45550740 45550750 TFAP2A_MA0003.3 9.027906230427513 - +chr1 45583750 45583760 TFAP2A_MA0003.3 7.594883953619148 - +chr1 45584443 45584453 TFAP2A_MA0003.3 8.677083097031222 - +chr1 45584496 45584506 TFAP2A_MA0003.3 7.535341045993354 + +chr1 45584496 45584506 TFAP2A_MA0003.3 8.213422847474547 - +chr1 45686740 45686750 TFAP2A_MA0003.3 8.689677111848003 + +chr1 45686762 45686772 TFAP2A_MA0003.3 8.878113601158494 - +chr1 45686827 45686837 TFAP2A_MA0003.3 10.391638517490895 + +chr1 45686827 45686837 TFAP2A_MA0003.3 10.199604674637030 - +chr1 45750448 45750458 TFAP2A_MA0003.3 8.543748865766986 - +chr1 45803627 45803637 TFAP2A_MA0003.3 7.772778684741890 - +chr1 45803725 45803735 TFAP2A_MA0003.3 8.035281886228237 + +chr1 45803752 45803762 TFAP2A_MA0003.3 8.011595310366811 - +chr1 46133102 46133112 TFAP2A_MA0003.3 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47437630 TFAP2A_MA0003.3 8.754476338127070 + +chr1 47437758 47437768 TFAP2A_MA0003.3 9.088006391320686 + +chr1 47437758 47437768 TFAP2A_MA0003.3 8.659656685749614 - +chr1 48472276 48472286 TFAP2A_MA0003.3 7.581392158960536 - +chr1 50977642 50977652 TFAP2A_MA0003.3 7.687671586301684 - +chr1 50977651 50977661 TFAP2A_MA0003.3 8.762379438414143 + +chr1 50977651 50977661 TFAP2A_MA0003.3 9.436337677994878 - +chr1 50978049 50978059 TFAP2A_MA0003.3 7.619680875900183 + +chr1 50978049 50978059 TFAP2A_MA0003.3 7.803865765448391 - +chr1 51235474 51235484 TFAP2A_MA0003.3 8.363644937881855 + +chr1 51236233 51236243 TFAP2A_MA0003.3 8.648083215335667 - +chr1 51519308 51519318 TFAP2A_MA0003.3 8.246009358588324 - +chr1 51729926 51729936 TFAP2A_MA0003.3 8.561656186417895 + +chr1 52032957 52032967 TFAP2A_MA0003.3 8.183688780540235 + +chr1 52032957 52032967 TFAP2A_MA0003.3 9.603384054831682 - +chr1 52142069 52142079 TFAP2A_MA0003.3 7.587468160734891 + +chr1 52142156 52142166 TFAP2A_MA0003.3 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75937195 TFAP2A_MA0003.3 9.076915919824106 + +chr1 75937185 75937195 TFAP2A_MA0003.3 7.803921549861798 - +chr1 76074600 76074610 TFAP2A_MA0003.3 7.603163862799445 + +chr1 77413225 77413235 TFAP2A_MA0003.3 8.752255920972157 + +chr1 77413225 77413235 TFAP2A_MA0003.3 9.024407037793697 - +chr1 77682557 77682567 TFAP2A_MA0003.3 7.687671586301684 + +chr1 77682929 77682939 TFAP2A_MA0003.3 9.973804539229180 + +chr1 77682929 77682939 TFAP2A_MA0003.3 8.282912340570951 - +chr1 77759858 77759868 TFAP2A_MA0003.3 9.027906230427512 + +chr1 77759858 77759868 TFAP2A_MA0003.3 8.730166723248852 - +chr1 77759913 77759923 TFAP2A_MA0003.3 7.849858967378721 + +chr1 77978293 77978303 TFAP2A_MA0003.3 7.596820729090429 + +chr1 77978293 77978303 TFAP2A_MA0003.3 8.105287708629177 - +chr1 77979404 77979414 TFAP2A_MA0003.3 8.469409336526207 + +chr1 77979404 77979414 TFAP2A_MA0003.3 8.555854925468578 - +chr1 78088459 78088469 TFAP2A_MA0003.3 7.494965130042764 - +chr1 81801681 81801691 TFAP2A_MA0003.3 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TFAP2B_MA0811.1 7.795715781675678 + +chr1 181482699 181482710 TFAP2B_MA0811.1 9.001227395813011 - +chr1 181514667 181514678 TFAP2B_MA0811.1 9.365326500022807 + +chr1 181514667 181514678 TFAP2B_MA0811.1 9.959844479946995 - +chr1 182030101 182030112 TFAP2B_MA0811.1 7.544938333547218 + +chr1 182030101 182030112 TFAP2B_MA0811.1 7.875384218829261 - +chr1 182391345 182391356 TFAP2B_MA0811.1 9.705122163144996 + +chr1 182391345 182391356 TFAP2B_MA0811.1 8.960808496096572 - +chr1 182604259 182604270 TFAP2B_MA0811.1 7.431962581756087 - +chr1 182839815 182839826 TFAP2B_MA0811.1 7.529003135948945 + +chr1 182839815 182839826 TFAP2B_MA0811.1 8.591900493266378 - +chr1 183023307 183023318 TFAP2B_MA0811.1 7.712397096541341 - +chr1 183023407 183023418 TFAP2B_MA0811.1 8.359974277114656 + +chr1 183023407 183023418 TFAP2B_MA0811.1 8.432134218376090 - +chr1 183471592 183471603 TFAP2B_MA0811.1 8.563283260858395 - +chr1 183590855 183590866 TFAP2B_MA0811.1 7.760169360925047 + +chr1 183590855 183590866 TFAP2B_MA0811.1 7.770693316070139 - +chr1 184037412 184037423 TFAP2B_MA0811.1 9.132281588617595 + +chr1 184037412 184037423 TFAP2B_MA0811.1 9.937638714890392 - +chr1 184164436 184164447 TFAP2B_MA0811.1 8.191487717653324 + +chr1 184974279 184974290 TFAP2B_MA0811.1 7.859777891371253 + +chr1 184974279 184974290 TFAP2B_MA0811.1 7.555709979007282 - +chr1 184974553 184974564 TFAP2B_MA0811.1 7.974970501105332 - +chr1 185045266 185045277 TFAP2B_MA0811.1 9.174871047513328 + +chr1 185045266 185045277 TFAP2B_MA0811.1 10.251287548583221 - +chr1 185157271 185157282 TFAP2B_MA0811.1 8.401627790759738 - +chr1 185317643 185317654 TFAP2B_MA0811.1 8.209421476867899 + +chr1 185439847 185439858 TFAP2B_MA0811.1 7.588276591865256 - +chr1 186559651 186559662 TFAP2B_MA0811.1 8.112536915418577 + +chr1 186559651 186559662 TFAP2B_MA0811.1 8.126995922296391 - +chr1 192808621 192808632 TFAP2B_MA0811.1 8.116755478445302 - +chr1 193059394 193059405 TFAP2B_MA0811.1 8.483497112031440 + +chr1 193059394 193059405 TFAP2B_MA0811.1 8.201913782089257 - +chr1 193122379 193122390 TFAP2B_MA0811.1 9.020329266455780 + +chr1 193122379 193122390 TFAP2B_MA0811.1 8.064236589933390 - +chr1 193438520 193438531 TFAP2B_MA0811.1 7.622636258753339 + +chr1 193537855 193537866 TFAP2B_MA0811.1 8.688106921780001 + +chr1 193537855 193537866 TFAP2B_MA0811.1 7.603858995315525 - +chr1 194290035 194290046 TFAP2B_MA0811.1 10.224743169496314 + +chr1 194290035 194290046 TFAP2B_MA0811.1 9.492485847610311 - +chr1 196723616 196723627 TFAP2B_MA0811.1 7.639429529494908 + +chr1 198159116 198159127 TFAP2B_MA0811.1 7.421909285284379 - +chr1 198168247 198168258 TFAP2B_MA0811.1 8.194212051183086 - +chr1 199273966 199273977 TFAP2B_MA0811.1 7.654643791269672 + +chr1 199273966 199273977 TFAP2B_MA0811.1 8.568714413519164 - +chr1 200153379 200153390 TFAP2B_MA0811.1 7.531624919550475 + +chr1 200627820 200627831 TFAP2B_MA0811.1 9.276068066369932 + +chr1 200627820 200627831 TFAP2B_MA0811.1 9.276068066369932 - +chr1 200669523 200669534 TFAP2B_MA0811.1 8.749335664706116 + +chr1 200669523 200669534 TFAP2B_MA0811.1 8.328133266551399 - +chr1 200669549 200669560 TFAP2B_MA0811.1 7.759652754623897 + +chr1 200669564 200669575 TFAP2B_MA0811.1 7.552496815744184 + +chr1 200867023 200867034 TFAP2B_MA0811.1 7.683527432469107 - +chr1 200870161 200870172 TFAP2B_MA0811.1 8.030160852958685 - +chr1 200888661 200888672 TFAP2B_MA0811.1 9.096595115062357 + +chr1 200888661 200888672 TFAP2B_MA0811.1 8.354753701156621 - +chr1 201506967 201506978 TFAP2B_MA0811.1 8.990707630603161 + +chr1 201506967 201506978 TFAP2B_MA0811.1 8.990707630603161 - +chr1 201982878 201982889 TFAP2B_MA0811.1 9.136500151644320 + +chr1 201982878 201982889 TFAP2B_MA0811.1 8.875024868866959 - +chr1 201982919 201982930 TFAP2B_MA0811.1 7.720495642191211 - +chr1 202888701 202888712 TFAP2B_MA0811.1 8.681553155991031 + +chr1 202888701 202888712 TFAP2B_MA0811.1 8.110555339499715 - +chr1 202958023 202958034 TFAP2B_MA0811.1 7.829810645861656 - +chr1 202958504 202958515 TFAP2B_MA0811.1 7.811698650122282 + +chr1 202958504 202958515 TFAP2B_MA0811.1 8.525454081168256 - +chr1 203289703 203289714 TFAP2B_MA0811.1 7.740647477832952 + +chr1 203289703 203289714 TFAP2B_MA0811.1 7.611552364765510 - +chr1 203305876 203305887 TFAP2B_MA0811.1 8.175810860204487 + +chr1 205749328 205749339 TFAP2B_MA0811.1 8.638503400342861 + +chr1 205749328 205749339 TFAP2B_MA0811.1 9.853599106499928 - +chr1 207454245 207454256 TFAP2B_MA0811.1 7.691220801919092 + +chr1 207822763 207822774 TFAP2B_MA0811.1 8.682098790044613 + +chr1 207822763 207822774 TFAP2B_MA0811.1 8.211839686400648 - +chr1 207868749 207868760 TFAP2B_MA0811.1 7.974970501105332 - +chr1 207868865 207868876 TFAP2B_MA0811.1 8.219419723768087 + +chr1 209134205 209134216 TFAP2B_MA0811.1 8.590162371516639 + +chr1 209134205 209134216 TFAP2B_MA0811.1 8.141907233374233 - +chr1 209747856 209747867 TFAP2B_MA0811.1 8.904291513614627 + +chr1 209747856 209747867 TFAP2B_MA0811.1 7.718221653442682 - +chr1 209769136 209769147 TFAP2B_MA0811.1 7.838831553561533 - +chr1 210233075 210233086 TFAP2B_MA0811.1 7.903811622282035 + +chr1 210233075 210233086 TFAP2B_MA0811.1 7.443553538318485 - +chr1 210329230 210329241 TFAP2B_MA0811.1 9.200078013817331 + +chr1 210329230 210329241 TFAP2B_MA0811.1 9.210601968962422 - +chr1 211258814 211258825 TFAP2B_MA0811.1 8.155841861595077 + +chr1 211259224 211259235 TFAP2B_MA0811.1 8.559062962199476 + +chr1 211327325 211327336 TFAP2B_MA0811.1 8.373498681804090 + +chr1 211327527 211327538 TFAP2B_MA0811.1 9.059198100741245 + +chr1 211327527 211327538 TFAP2B_MA0811.1 8.731266787146335 - +chr1 211335753 211335764 TFAP2B_MA0811.1 7.502280151415491 - +chr1 211578072 211578083 TFAP2B_MA0811.1 7.801495908171940 + +chr1 211578072 211578083 TFAP2B_MA0811.1 7.493436173048022 - +chr1 211607082 211607093 TFAP2B_MA0811.1 7.810952615022467 + diff --git a/demo/known_tfbs_chr1_hg38/TFAP2B_var.2__MA0812.1.bed b/demo/known_tfbs_chr1_hg38/TFAP2B_var.2__MA0812.1.bed new file mode 100644 index 0000000..586b34d --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/TFAP2B_var.2__MA0812.1.bed @@ -0,0 +1,1047 @@ +chr1 779189 779199 TFAP2B_var.2__MA0812.1 8.658956023099584 + +chr1 779189 779199 TFAP2B_var.2__MA0812.1 8.405920341804022 - +chr1 1013455 1013465 TFAP2B_var.2__MA0812.1 10.645972561574736 + +chr1 1013455 1013465 TFAP2B_var.2__MA0812.1 11.172294903190535 - +chr1 1013493 1013503 TFAP2B_var.2__MA0812.1 7.525046786285116 + +chr1 1013493 1013503 TFAP2B_var.2__MA0812.1 7.875158176180098 - +chr1 1059713 1059723 TFAP2B_var.2__MA0812.1 7.909815182211752 - +chr1 1157796 1157806 TFAP2B_var.2__MA0812.1 9.117039359542519 + +chr1 1158083 1158093 TFAP2B_var.2__MA0812.1 8.192728642237038 + +chr1 1158083 1158093 TFAP2B_var.2__MA0812.1 7.658012303150453 - +chr1 1231786 1231796 TFAP2B_var.2__MA0812.1 8.941594662594049 + +chr1 1232100 1232110 TFAP2B_var.2__MA0812.1 8.302291087867804 + +chr1 1232100 1232110 TFAP2B_var.2__MA0812.1 7.427774558437623 - +chr1 1232219 1232229 TFAP2B_var.2__MA0812.1 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29181946 TFAP2B_var.2__MA0812.1 7.565045118516665 + +chr1 30718523 30718533 TFAP2B_var.2__MA0812.1 8.317979608056149 + +chr1 31155403 31155413 TFAP2B_var.2__MA0812.1 8.317979608056149 - +chr1 31296976 31296986 TFAP2B_var.2__MA0812.1 8.203838618714094 + +chr1 31296976 31296986 TFAP2B_var.2__MA0812.1 7.466866856274587 - +chr1 31788566 31788576 TFAP2B_var.2__MA0812.1 8.656496224336843 + +chr1 31788566 31788576 TFAP2B_var.2__MA0812.1 10.062879579964843 - +chr1 32108379 32108389 TFAP2B_var.2__MA0812.1 7.427774558437624 + +chr1 32108379 32108389 TFAP2B_var.2__MA0812.1 8.302291087867804 - +chr1 32179872 32179882 TFAP2B_var.2__MA0812.1 7.372139387633822 - +chr1 32179971 32179981 TFAP2B_var.2__MA0812.1 7.829376301177400 - +chr1 32292113 32292123 TFAP2B_var.2__MA0812.1 7.516056318966148 + +chr1 32292113 32292123 TFAP2B_var.2__MA0812.1 7.967868218161166 - +chr1 32336064 32336074 TFAP2B_var.2__MA0812.1 8.008123693045434 + +chr1 32336064 32336074 TFAP2B_var.2__MA0812.1 7.842617252342054 - +chr1 32394486 32394496 TFAP2B_var.2__MA0812.1 7.795831108901560 + +chr1 32500564 32500574 TFAP2B_var.2__MA0812.1 7.952167468233770 - +chr1 32500599 32500609 TFAP2B_var.2__MA0812.1 8.656496224336843 + +chr1 32500599 32500609 TFAP2B_var.2__MA0812.1 10.062879579964843 - +chr1 32817389 32817399 TFAP2B_var.2__MA0812.1 7.675964290816916 + +chr1 33181230 33181240 TFAP2B_var.2__MA0812.1 7.402713322443041 + +chr1 33181230 33181240 TFAP2B_var.2__MA0812.1 8.146770639897012 - +chr1 33256807 33256817 TFAP2B_var.2__MA0812.1 7.642311553223059 + +chr1 33256807 33256817 TFAP2B_var.2__MA0812.1 7.857497291532980 - +chr1 33349932 33349942 TFAP2B_var.2__MA0812.1 8.268733665852913 - +chr1 33350061 33350071 TFAP2B_var.2__MA0812.1 7.658012303150453 + +chr1 33350061 33350071 TFAP2B_var.2__MA0812.1 8.192728642237038 - +chr1 33350369 33350379 TFAP2B_var.2__MA0812.1 8.766927969647536 - +chr1 33472544 33472554 TFAP2B_var.2__MA0812.1 8.268733665852913 + +chr1 34985353 34985363 TFAP2B_var.2__MA0812.1 7.410521294400366 + 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TFAP2B_var.2__MA0812.1 7.642311553223055 - +chr1 40040666 40040676 TFAP2B_var.2__MA0812.1 7.525046786285116 + +chr1 40040666 40040676 TFAP2B_var.2__MA0812.1 7.875158176180098 - +chr1 40477407 40477417 TFAP2B_var.2__MA0812.1 7.641867760196376 + +chr1 40477407 40477417 TFAP2B_var.2__MA0812.1 7.721381477848875 - +chr1 40665514 40665524 TFAP2B_var.2__MA0812.1 8.256854623631199 + +chr1 40665514 40665524 TFAP2B_var.2__MA0812.1 7.526051054722912 - +chr1 40665723 40665733 TFAP2B_var.2__MA0812.1 8.729776457787196 - +chr1 40862529 40862539 TFAP2B_var.2__MA0812.1 10.062879579964843 + +chr1 40862529 40862539 TFAP2B_var.2__MA0812.1 8.656496224336841 - +chr1 40980309 40980319 TFAP2B_var.2__MA0812.1 7.658012303150453 + +chr1 40980309 40980319 TFAP2B_var.2__MA0812.1 8.192728642237038 - +chr1 41241995 41242005 TFAP2B_var.2__MA0812.1 8.207608681427963 + +chr1 41361366 41361376 TFAP2B_var.2__MA0812.1 7.530936358157075 + +chr1 41361366 41361376 TFAP2B_var.2__MA0812.1 7.602056078338790 - +chr1 41662339 41662349 TFAP2B_var.2__MA0812.1 7.592061342582024 - +chr1 41728412 41728422 TFAP2B_var.2__MA0812.1 8.652402477762786 - +chr1 42035938 42035948 TFAP2B_var.2__MA0812.1 9.117039359542519 + +chr1 42334772 42334782 TFAP2B_var.2__MA0812.1 7.915156508411648 - +chr1 42335091 42335101 TFAP2B_var.2__MA0812.1 7.372139387633822 + +chr1 42456787 42456797 TFAP2B_var.2__MA0812.1 7.875158176180098 + +chr1 42456787 42456797 TFAP2B_var.2__MA0812.1 7.525046786285116 - +chr1 42682373 42682383 TFAP2B_var.2__MA0812.1 7.466866856274589 + +chr1 42682373 42682383 TFAP2B_var.2__MA0812.1 8.203838618714094 - +chr1 42766671 42766681 TFAP2B_var.2__MA0812.1 8.533077078252699 + +chr1 42931907 42931917 TFAP2B_var.2__MA0812.1 7.592041369809234 + +chr1 42958201 42958211 TFAP2B_var.2__MA0812.1 7.372139387633822 - +chr1 42958522 42958532 TFAP2B_var.2__MA0812.1 7.958877750842198 + +chr1 42958522 42958532 TFAP2B_var.2__MA0812.1 7.608766360947216 - +chr1 43358482 43358492 TFAP2B_var.2__MA0812.1 7.967868218161166 + +chr1 43358482 43358492 TFAP2B_var.2__MA0812.1 7.516056318966148 - +chr1 43358521 43358531 TFAP2B_var.2__MA0812.1 7.424004495723756 + +chr1 43358521 43358531 TFAP2B_var.2__MA0812.1 8.476957780814317 - +chr1 43946409 43946419 TFAP2B_var.2__MA0812.1 8.498990467402301 + +chr1 43946715 43946725 TFAP2B_var.2__MA0812.1 8.883188468147679 - +chr1 43974679 43974689 TFAP2B_var.2__MA0812.1 7.653931604228932 - +chr1 44030119 44030129 TFAP2B_var.2__MA0812.1 7.857497291532980 + +chr1 44030119 44030129 TFAP2B_var.2__MA0812.1 7.642311553223055 - +chr1 44632084 44632094 TFAP2B_var.2__MA0812.1 7.856404754981809 + +chr1 45011020 45011030 TFAP2B_var.2__MA0812.1 8.206516144876794 - +chr1 45011040 45011050 TFAP2B_var.2__MA0812.1 9.117039359542519 + +chr1 45340360 45340370 TFAP2B_var.2__MA0812.1 8.766927969647536 - +chr1 45521606 45521616 TFAP2B_var.2__MA0812.1 7.534946315563265 - +chr1 45550740 45550750 TFAP2B_var.2__MA0812.1 8.732501247952719 + +chr1 45550740 45550750 TFAP2B_var.2__MA0812.1 9.336961314490722 - 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7.656486430710060 + +chr1 46302699 46302709 TFAP2B_var.2__MA0812.1 8.176640578794636 - +chr1 46303013 46303023 TFAP2B_var.2__MA0812.1 10.062879579964843 + +chr1 46303013 46303023 TFAP2B_var.2__MA0812.1 8.656496224336841 - +chr1 46303305 46303315 TFAP2B_var.2__MA0812.1 8.533077078252699 - +chr1 46303588 46303598 TFAP2B_var.2__MA0812.1 8.550961199771059 + +chr1 46303588 46303598 TFAP2B_var.2__MA0812.1 10.031854997819842 - +chr1 46616841 46616851 TFAP2B_var.2__MA0812.1 7.728091760457304 + +chr1 46616841 46616851 TFAP2B_var.2__MA0812.1 8.069809152881501 - +chr1 46668210 46668220 TFAP2B_var.2__MA0812.1 9.117039359542519 + +chr1 46718872 46718882 TFAP2B_var.2__MA0812.1 8.379665067892212 - +chr1 47437620 47437630 TFAP2B_var.2__MA0812.1 7.952167468233770 + +chr1 47437758 47437768 TFAP2B_var.2__MA0812.1 9.478760382643166 + +chr1 47437758 47437768 TFAP2B_var.2__MA0812.1 9.290836752809104 - +chr1 50977651 50977661 TFAP2B_var.2__MA0812.1 8.772756722836988 + +chr1 50977651 50977661 TFAP2B_var.2__MA0812.1 9.663522247866627 - +chr1 50977782 50977792 TFAP2B_var.2__MA0812.1 7.814052468959793 + +chr1 50978049 50978059 TFAP2B_var.2__MA0812.1 7.743248219505594 + +chr1 50978049 50978059 TFAP2B_var.2__MA0812.1 7.687836285573035 - +chr1 50978173 50978183 TFAP2B_var.2__MA0812.1 7.614839306391966 + +chr1 51235474 51235484 TFAP2B_var.2__MA0812.1 8.668651473362246 + +chr1 51236233 51236243 TFAP2B_var.2__MA0812.1 8.268733665852913 - +chr1 51519308 51519318 TFAP2B_var.2__MA0812.1 7.530936358157075 + +chr1 51519308 51519318 TFAP2B_var.2__MA0812.1 7.602056078338790 - +chr1 51729926 51729936 TFAP2B_var.2__MA0812.1 8.551830499450986 + +chr1 51879179 51879189 TFAP2B_var.2__MA0812.1 7.555914452398260 + +chr1 51879179 51879189 TFAP2B_var.2__MA0812.1 8.314168281526397 - +chr1 52032957 52032967 TFAP2B_var.2__MA0812.1 8.756063934210845 + +chr1 52032957 52032967 TFAP2B_var.2__MA0812.1 9.543655429781982 - +chr1 52055258 52055268 TFAP2B_var.2__MA0812.1 7.580201577564956 - +chr1 52142069 52142079 TFAP2B_var.2__MA0812.1 7.702992744621326 + +chr1 52142069 52142079 TFAP2B_var.2__MA0812.1 7.361275352197130 - +chr1 52142311 52142321 TFAP2B_var.2__MA0812.1 8.207608681427963 - +chr1 52366428 52366438 TFAP2B_var.2__MA0812.1 9.897373139261465 + +chr1 52366428 52366438 TFAP2B_var.2__MA0812.1 8.822002665040220 - +chr1 53196924 53196934 TFAP2B_var.2__MA0812.1 9.386207256693957 + +chr1 53196924 53196934 TFAP2B_var.2__MA0812.1 8.966352139347556 - +chr1 53238744 53238754 TFAP2B_var.2__MA0812.1 8.671376263527769 + +chr1 53238744 53238754 TFAP2B_var.2__MA0812.1 9.697067440142465 - +chr1 53326634 53326644 TFAP2B_var.2__MA0812.1 7.427226312765558 + +chr1 53326634 53326644 TFAP2B_var.2__MA0812.1 8.653771434171320 - +chr1 53327340 53327350 TFAP2B_var.2__MA0812.1 10.031854997819842 + +chr1 53327340 53327350 TFAP2B_var.2__MA0812.1 8.550961199771059 - +chr1 53327522 53327532 TFAP2B_var.2__MA0812.1 7.675964290816916 + +chr1 53946530 53946540 TFAP2B_var.2__MA0812.1 8.189134552391588 + +chr1 53946530 53946540 TFAP2B_var.2__MA0812.1 7.839023162496606 - +chr1 54801198 54801208 TFAP2B_var.2__MA0812.1 8.428170032714689 + +chr1 54801198 54801208 TFAP2B_var.2__MA0812.1 8.866963133738304 - +chr1 54886847 54886857 TFAP2B_var.2__MA0812.1 7.952167468233770 + +chr1 55214509 55214519 TFAP2B_var.2__MA0812.1 7.561073267175908 + +chr1 55214637 55214647 TFAP2B_var.2__MA0812.1 8.705742166540078 + +chr1 55214637 55214647 TFAP2B_var.2__MA0812.1 10.296730471359682 - +chr1 56106647 56106657 TFAP2B_var.2__MA0812.1 7.657855387118594 + +chr1 56106647 56106657 TFAP2B_var.2__MA0812.1 8.526203723017552 - +chr1 56821226 56821236 TFAP2B_var.2__MA0812.1 7.891042483808820 + +chr1 56821226 56821236 TFAP2B_var.2__MA0812.1 7.540931093913840 - +chr1 58546430 58546440 TFAP2B_var.2__MA0812.1 8.189134552391588 + +chr1 58546430 58546440 TFAP2B_var.2__MA0812.1 7.839023162496606 - +chr1 58546592 58546602 TFAP2B_var.2__MA0812.1 7.469270175525653 + +chr1 58816571 58816581 TFAP2B_var.2__MA0812.1 10.247484529156447 + 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TFAP2B_var.2__MA0812.1 7.475800844081880 + +chr1 193121979 193121989 TFAP2B_var.2__MA0812.1 7.641307284785261 - +chr1 197775316 197775326 TFAP2B_var.2__MA0812.1 8.729776457787196 + +chr1 197902951 197902961 TFAP2B_var.2__MA0812.1 8.008123693045434 + +chr1 197902951 197902961 TFAP2B_var.2__MA0812.1 7.842617252342054 - +chr1 197903044 197903054 TFAP2B_var.2__MA0812.1 8.541970732452093 + +chr1 197903044 197903054 TFAP2B_var.2__MA0812.1 10.124565039800910 - +chr1 198157175 198157185 TFAP2B_var.2__MA0812.1 7.372139387633822 + +chr1 199274082 199274092 TFAP2B_var.2__MA0812.1 8.558567489628059 + +chr1 200409863 200409873 TFAP2B_var.2__MA0812.1 9.543655429781982 + +chr1 200409863 200409873 TFAP2B_var.2__MA0812.1 8.756063934210845 - +chr1 200669565 200669575 TFAP2B_var.2__MA0812.1 8.029682000296399 + +chr1 200739313 200739323 TFAP2B_var.2__MA0812.1 7.829376301177400 - +chr1 201114382 201114392 TFAP2B_var.2__MA0812.1 9.193544039887001 + +chr1 201114382 201114392 TFAP2B_var.2__MA0812.1 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203650579 203650589 TFAP2B_var.2__MA0812.1 8.781747190155954 + +chr1 203650579 203650589 TFAP2B_var.2__MA0812.1 9.570812205885559 - +chr1 203795992 203796002 TFAP2B_var.2__MA0812.1 10.296730471359682 + +chr1 203795992 203796002 TFAP2B_var.2__MA0812.1 8.705742166540077 - +chr1 204453205 204453215 TFAP2B_var.2__MA0812.1 7.626987721005450 + +chr1 204453205 204453215 TFAP2B_var.2__MA0812.1 8.087193617671254 - +chr1 204807531 204807541 TFAP2B_var.2__MA0812.1 8.705742166540078 + +chr1 204807531 204807541 TFAP2B_var.2__MA0812.1 10.296730471359682 - +chr1 205227953 205227963 TFAP2B_var.2__MA0812.1 8.152473167352769 - +chr1 205228091 205228101 TFAP2B_var.2__MA0812.1 7.372139387633822 - +chr1 205321784 205321794 TFAP2B_var.2__MA0812.1 8.766927969647536 + +chr1 205441173 205441183 TFAP2B_var.2__MA0812.1 8.378924090511454 + +chr1 205441173 205441183 TFAP2B_var.2__MA0812.1 8.633112242343465 - +chr1 205775189 205775199 TFAP2B_var.2__MA0812.1 8.551830499450986 + +chr1 206051037 206051047 TFAP2B_var.2__MA0812.1 9.346956050247485 + +chr1 206051037 206051047 TFAP2B_var.2__MA0812.1 9.021487653422749 - +chr1 206053087 206053097 TFAP2B_var.2__MA0812.1 8.378924090511454 + +chr1 206053087 206053097 TFAP2B_var.2__MA0812.1 8.633112242343465 - +chr1 206557313 206557323 TFAP2B_var.2__MA0812.1 7.658012303150453 + +chr1 206557313 206557323 TFAP2B_var.2__MA0812.1 8.192728642237038 - +chr1 206635747 206635757 TFAP2B_var.2__MA0812.1 8.207608681427963 - +chr1 206739608 206739618 TFAP2B_var.2__MA0812.1 8.653771434171320 + +chr1 206739608 206739618 TFAP2B_var.2__MA0812.1 7.427226312765558 - +chr1 207050775 207050785 TFAP2B_var.2__MA0812.1 8.268733665852913 - +chr1 207321788 207321798 TFAP2B_var.2__MA0812.1 7.687836285573035 + +chr1 207321788 207321798 TFAP2B_var.2__MA0812.1 7.743248219505594 - +chr1 207751853 207751863 TFAP2B_var.2__MA0812.1 10.876758551959629 + +chr1 207751853 207751863 TFAP2B_var.2__MA0812.1 10.711252111256252 - +chr1 207752044 207752054 TFAP2B_var.2__MA0812.1 7.958877750842198 + +chr1 207752044 207752054 TFAP2B_var.2__MA0812.1 7.608766360947216 - +chr1 207868799 207868809 TFAP2B_var.2__MA0812.1 7.526051054722914 + +chr1 207868799 207868809 TFAP2B_var.2__MA0812.1 8.256854623631199 - +chr1 209354607 209354617 TFAP2B_var.2__MA0812.1 9.482530445357032 + +chr1 209354607 209354617 TFAP2B_var.2__MA0812.1 9.116170059862592 - +chr1 209751834 209751844 TFAP2B_var.2__MA0812.1 10.760498053459488 + +chr1 209751834 209751844 TFAP2B_var.2__MA0812.1 11.110609443354468 - +chr1 209768815 209768825 TFAP2B_var.2__MA0812.1 7.641287312012470 - +chr1 209769136 209769146 TFAP2B_var.2__MA0812.1 7.656486430710060 + +chr1 209769136 209769146 TFAP2B_var.2__MA0812.1 8.176640578794636 - +chr1 209784536 209784546 TFAP2B_var.2__MA0812.1 7.699526977075044 + +chr1 210343666 210343676 TFAP2B_var.2__MA0812.1 7.752367009123728 - +chr1 211259225 211259235 TFAP2B_var.2__MA0812.1 8.145942498796543 + +chr1 211260418 211260428 TFAP2B_var.2__MA0812.1 9.117539016271126 + +chr1 211260418 211260428 TFAP2B_var.2__MA0812.1 9.832093589579950 - +chr1 211326787 211326797 TFAP2B_var.2__MA0812.1 8.883188468147679 + +chr1 211335753 211335763 TFAP2B_var.2__MA0812.1 7.937028437827006 - +chr1 211382704 211382714 TFAP2B_var.2__MA0812.1 9.340082695012340 + +chr1 211382704 211382714 TFAP2B_var.2__MA0812.1 9.712611274038004 - +chr1 211416586 211416596 TFAP2B_var.2__MA0812.1 7.530936358157075 + +chr1 211416586 211416596 TFAP2B_var.2__MA0812.1 7.602056078338790 - +chr1 211578814 211578824 TFAP2B_var.2__MA0812.1 7.475800844081880 + +chr1 211578814 211578824 TFAP2B_var.2__MA0812.1 7.641307284785261 - +chr1 211675605 211675615 TFAP2B_var.2__MA0812.1 7.362761606799848 - +chr1 211675888 211675898 TFAP2B_var.2__MA0812.1 9.009067412994565 + +chr1 211675888 211675898 TFAP2B_var.2__MA0812.1 8.055808951909041 - +chr1 211830276 211830286 TFAP2B_var.2__MA0812.1 7.857497291532980 + +chr1 211830276 211830286 TFAP2B_var.2__MA0812.1 7.642311553223055 - +chr1 211830448 211830458 TFAP2B_var.2__MA0812.1 7.598590310792505 + +chr1 212186807 212186817 TFAP2B_var.2__MA0812.1 8.053084161743516 - +chr1 212285563 212285573 TFAP2B_var.2__MA0812.1 7.958877750842198 + +chr1 212285563 212285573 TFAP2B_var.2__MA0812.1 7.608766360947216 - +chr1 212286124 212286134 TFAP2B_var.2__MA0812.1 7.592061342582024 + +chr1 212414796 212414806 TFAP2B_var.2__MA0812.1 8.152473167352769 + +chr1 212567177 212567187 TFAP2B_var.2__MA0812.1 10.708527321090729 + +chr1 212567177 212567187 TFAP2B_var.2__MA0812.1 8.241105284760344 - +chr1 212609047 212609057 TFAP2B_var.2__MA0812.1 9.365709471445774 + +chr1 212609047 212609057 TFAP2B_var.2__MA0812.1 9.269946758193813 - +chr1 212665383 212665393 TFAP2B_var.2__MA0812.1 7.362761606799848 + +chr1 212665456 212665466 TFAP2B_var.2__MA0812.1 7.614291060719902 + +chr1 212699840 212699850 TFAP2B_var.2__MA0812.1 8.053104134516307 + +chr1 212699888 212699898 TFAP2B_var.2__MA0812.1 9.009067412994565 + +chr1 212699888 212699898 TFAP2B_var.2__MA0812.1 8.055808951909041 - +chr1 212700476 212700486 TFAP2B_var.2__MA0812.1 7.819233270348680 + +chr1 212858966 212858976 TFAP2B_var.2__MA0812.1 8.440367036271631 - +chr1 212950655 212950665 TFAP2B_var.2__MA0812.1 9.117039359542519 + +chr1 214281306 214281316 TFAP2B_var.2__MA0812.1 7.372139387633822 - +chr1 214281460 214281470 TFAP2B_var.2__MA0812.1 8.317979608056149 - +chr1 215567609 215567619 TFAP2B_var.2__MA0812.1 8.591216674655328 + +chr1 215567609 215567619 TFAP2B_var.2__MA0812.1 10.358415931195747 - +chr1 215567622 215567632 TFAP2B_var.2__MA0812.1 8.241974584440273 + +chr1 215567622 215567632 TFAP2B_var.2__MA0812.1 7.891863194545290 - +chr1 216601144 216601154 TFAP2B_var.2__MA0812.1 7.752367009123727 + +chr1 216601154 216601164 TFAP2B_var.2__MA0812.1 7.777337702660541 + +chr1 216601154 216601164 TFAP2B_var.2__MA0812.1 8.303660044276338 - +chr1 217630858 217630868 TFAP2B_var.2__MA0812.1 7.427774558437624 + +chr1 217630858 217630868 TFAP2B_var.2__MA0812.1 8.302291087867804 - +chr1 218284791 218284801 TFAP2B_var.2__MA0812.1 7.819233270348680 + +chr1 220272523 220272533 TFAP2B_var.2__MA0812.1 7.466866856274589 + +chr1 220272523 220272533 TFAP2B_var.2__MA0812.1 8.203838618714094 - +chr1 220718305 220718315 TFAP2B_var.2__MA0812.1 8.551830499450986 + +chr1 220786950 220786960 TFAP2B_var.2__MA0812.1 7.641307284785261 + +chr1 220786950 220786960 TFAP2B_var.2__MA0812.1 7.475800844081880 - +chr1 220787086 220787096 TFAP2B_var.2__MA0812.1 7.825912233976862 - +chr1 221839982 221839992 TFAP2B_var.2__MA0812.1 7.407436420617633 - +chr1 222617863 222617873 TFAP2B_var.2__MA0812.1 8.037947675468018 + +chr1 222617863 222617873 TFAP2B_var.2__MA0812.1 7.393136829610612 - +chr1 222773181 222773191 TFAP2B_var.2__MA0812.1 9.116170059862592 + +chr1 222773181 222773191 TFAP2B_var.2__MA0812.1 9.482530445357032 - +chr1 222814914 222814924 TFAP2B_var.2__MA0812.1 7.592061342582024 + +chr1 222815315 222815325 TFAP2B_var.2__MA0812.1 7.713115802677257 + +chr1 223143994 223144004 TFAP2B_var.2__MA0812.1 8.429039332394616 - +chr1 223364669 223364679 TFAP2B_var.2__MA0812.1 8.152473167352769 + +chr1 223845853 223845863 TFAP2B_var.2__MA0812.1 8.241974584440273 + +chr1 223845853 223845863 TFAP2B_var.2__MA0812.1 7.891863194545290 - +chr1 223846008 223846018 TFAP2B_var.2__MA0812.1 7.918622275957929 + +chr1 224114201 224114211 TFAP2B_var.2__MA0812.1 8.090255646376649 - +chr1 224183509 224183519 TFAP2B_var.2__MA0812.1 7.856404754981809 + +chr1 224357001 224357011 TFAP2B_var.2__MA0812.1 10.707658021410802 + +chr1 224357001 224357011 TFAP2B_var.2__MA0812.1 11.057769411305783 - +chr1 225427872 225427882 TFAP2B_var.2__MA0812.1 8.766927969647536 - +chr1 225428150 225428160 TFAP2B_var.2__MA0812.1 7.658012303150453 + +chr1 225428150 225428160 TFAP2B_var.2__MA0812.1 8.192728642237038 - +chr1 225467453 225467463 TFAP2B_var.2__MA0812.1 9.132419055462051 + +chr1 225467453 225467463 TFAP2B_var.2__MA0812.1 9.466281449757572 - +chr1 225475201 225475211 TFAP2B_var.2__MA0812.1 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11681406 TFAP2B_var.3__MA0813.1 11.901783547946035 + +chr1 11681394 11681406 TFAP2B_var.3__MA0813.1 10.980396971300582 - +chr1 11934671 11934683 TFAP2B_var.3__MA0813.1 9.604087310289842 + +chr1 11934671 11934683 TFAP2B_var.3__MA0813.1 9.730906074373312 - +chr1 12052333 12052345 TFAP2B_var.3__MA0813.1 8.012023018447854 + +chr1 12079070 12079082 TFAP2B_var.3__MA0813.1 7.237605171569221 + +chr1 12079428 12079440 TFAP2B_var.3__MA0813.1 7.908191296195914 + +chr1 12079428 12079440 TFAP2B_var.3__MA0813.1 6.846014389259575 - +chr1 12230193 12230205 TFAP2B_var.3__MA0813.1 6.859462190560190 + +chr1 12230193 12230205 TFAP2B_var.3__MA0813.1 6.880447417525668 - +chr1 12230288 12230300 TFAP2B_var.3__MA0813.1 8.327261186570190 + +chr1 12230288 12230300 TFAP2B_var.3__MA0813.1 7.234138262036202 - +chr1 12230694 12230706 TFAP2B_var.3__MA0813.1 8.063488508865280 + +chr1 12230694 12230706 TFAP2B_var.3__MA0813.1 7.531758384820303 - +chr1 13700154 13700166 TFAP2B_var.3__MA0813.1 8.237666326343996 + +chr1 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TFAP2B_var.3__MA0813.1 9.923883435320672 + +chr1 20696721 20696733 TFAP2B_var.3__MA0813.1 9.390445814534459 - +chr1 20696972 20696984 TFAP2B_var.3__MA0813.1 6.849141845085438 - +chr1 20787134 20787146 TFAP2B_var.3__MA0813.1 7.536414170004170 + +chr1 20787134 20787146 TFAP2B_var.3__MA0813.1 8.662972276221732 - +chr1 21176623 21176635 TFAP2B_var.3__MA0813.1 8.599344438295347 + +chr1 21176623 21176635 TFAP2B_var.3__MA0813.1 7.859889688551114 - +chr1 21334503 21334515 TFAP2B_var.3__MA0813.1 7.041041484605159 + +chr1 21345541 21345553 TFAP2B_var.3__MA0813.1 7.635010482874254 - +chr1 21782794 21782806 TFAP2B_var.3__MA0813.1 7.974772506632480 + +chr1 21782794 21782806 TFAP2B_var.3__MA0813.1 7.616439473218263 - +chr1 21866228 21866240 TFAP2B_var.3__MA0813.1 7.500433428444551 + +chr1 21866228 21866240 TFAP2B_var.3__MA0813.1 7.141908576994170 - +chr1 22053097 22053109 TFAP2B_var.3__MA0813.1 7.613357478804809 + +chr1 22053097 22053109 TFAP2B_var.3__MA0813.1 7.898036081366472 - +chr1 23019802 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TFAP2B_var.3__MA0813.1 7.085272092516420 - +chr1 107141118 107141130 TFAP2B_var.3__MA0813.1 7.792832433370718 + +chr1 107141118 107141130 TFAP2B_var.3__MA0813.1 7.667412457913474 - +chr1 107141119 107141131 TFAP2B_var.3__MA0813.1 8.556255143478651 + +chr1 107141119 107141131 TFAP2B_var.3__MA0813.1 7.900697093245050 - +chr1 107964109 107964121 TFAP2B_var.3__MA0813.1 9.451968960621837 + +chr1 107964109 107964121 TFAP2B_var.3__MA0813.1 9.543358323741295 - +chr1 108199937 108199949 TFAP2B_var.3__MA0813.1 6.971333123987415 + +chr1 108661164 108661176 TFAP2B_var.3__MA0813.1 8.986796620957684 + +chr1 108661164 108661176 TFAP2B_var.3__MA0813.1 9.404391110865131 - +chr1 108693117 108693129 TFAP2B_var.3__MA0813.1 9.034744303088036 + +chr1 108693117 108693129 TFAP2B_var.3__MA0813.1 9.014495438312000 - +chr1 109090588 109090600 TFAP2B_var.3__MA0813.1 7.669937722890847 - +chr1 109100444 109100456 TFAP2B_var.3__MA0813.1 8.627060195676417 + +chr1 109100444 109100456 TFAP2B_var.3__MA0813.1 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TFAP2C_var.3__MA0815.1 7.460830316216910 + +chr1 1019606 1019618 TFAP2C_var.3__MA0815.1 7.479639988941004 - +chr1 1019607 1019619 TFAP2C_var.3__MA0815.1 7.577854099366330 + +chr1 1019607 1019619 TFAP2C_var.3__MA0815.1 7.418823568070177 - +chr1 1324556 1324568 TFAP2C_var.3__MA0815.1 6.893637075502584 + +chr1 1349360 1349372 TFAP2C_var.3__MA0815.1 7.904736265754931 + +chr1 1349360 1349372 TFAP2C_var.3__MA0815.1 8.036592756223090 - +chr1 1407631 1407643 TFAP2C_var.3__MA0815.1 7.135100953805532 + +chr1 1407631 1407643 TFAP2C_var.3__MA0815.1 6.855510142330727 - +chr1 1471692 1471704 TFAP2C_var.3__MA0815.1 8.230540749060616 + +chr1 1471692 1471704 TFAP2C_var.3__MA0815.1 8.137638944154519 - +chr1 1692688 1692700 TFAP2C_var.3__MA0815.1 10.790356125428010 + +chr1 1692688 1692700 TFAP2C_var.3__MA0815.1 10.758648257027783 - +chr1 1692756 1692768 TFAP2C_var.3__MA0815.1 7.516325894813343 + +chr1 1692756 1692768 TFAP2C_var.3__MA0815.1 7.696841760644099 - +chr1 1693172 1693184 TFAP2C_var.3__MA0815.1 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86914237 TGIF1_MA0796.1 1.087762483476720 + +chr1 88701054 88701065 TGIF1_MA0796.1 1.500300731237269 - +chr1 89022515 89022526 TGIF1_MA0796.1 -0.897791100655733 + +chr1 89669840 89669851 TGIF1_MA0796.1 -0.074235523716524 + +chr1 89693929 89693940 TGIF1_MA0796.1 -0.193003440481488 + +chr1 89694226 89694237 TGIF1_MA0796.1 -0.066848047138906 - +chr1 92538178 92538189 TGIF1_MA0796.1 4.541751023351779 + +chr1 92975720 92975731 TGIF1_MA0796.1 2.741810874809253 - +chr1 93878683 93878694 TGIF1_MA0796.1 0.511120147479681 + +chr1 93878683 93878694 TGIF1_MA0796.1 3.913817349485248 - +chr1 93908795 93908806 TGIF1_MA0796.1 1.127692759186315 + +chr1 96515604 96515615 TGIF1_MA0796.1 2.637388924790469 + +chr1 96722477 96722488 TGIF1_MA0796.1 1.157887586835703 - +chr1 97159063 97159074 TGIF1_MA0796.1 1.644774872340048 + +chr1 97864585 97864596 TGIF1_MA0796.1 0.636583472651767 + +chr1 97864585 97864596 TGIF1_MA0796.1 0.784481802575753 - +chr1 99685707 99685718 TGIF1_MA0796.1 2.312022263178700 + +chr1 99685707 99685718 TGIF1_MA0796.1 3.711109298447323 - +chr1 100046785 100046796 TGIF1_MA0796.1 0.573199449751342 + +chr1 100046991 100047002 TGIF1_MA0796.1 -0.625857974714992 - +chr1 100523396 100523407 TGIF1_MA0796.1 -0.257599551718269 + +chr1 100523396 100523407 TGIF1_MA0796.1 -0.832621551992378 - +chr1 101222160 101222171 TGIF1_MA0796.1 1.654273793938932 + +chr1 101371329 101371340 TGIF1_MA0796.1 0.058689930876528 + +chr1 101371329 101371340 TGIF1_MA0796.1 -0.560055652834017 - +chr1 104878763 104878774 TGIF1_MA0796.1 0.586101662830879 + +chr1 107132759 107132770 TGIF1_MA0796.1 2.383335565901409 + +chr1 107132759 107132770 TGIF1_MA0796.1 7.913127796418383 - +chr1 107777500 107777511 TGIF1_MA0796.1 2.091214141926609 - +chr1 107935163 107935174 TGIF1_MA0796.1 2.230240614894780 + +chr1 107935163 107935174 TGIF1_MA0796.1 2.230240614894779 - +chr1 107963688 107963699 TGIF1_MA0796.1 2.767641365206839 + +chr1 107963688 107963699 TGIF1_MA0796.1 -0.649631240000089 - +chr1 107964153 107964164 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160429249 TGIF1_MA0796.1 -0.775289428918508 + +chr1 161045183 161045194 TGIF1_MA0796.1 2.312022263178700 + +chr1 161045183 161045194 TGIF1_MA0796.1 3.711109298447323 - +chr1 161202191 161202202 TGIF1_MA0796.1 1.316442462704599 + +chr1 161202191 161202202 TGIF1_MA0796.1 1.316442462704597 - +chr1 161225983 161225994 TGIF1_MA0796.1 3.362020207495827 + +chr1 161225983 161225994 TGIF1_MA0796.1 0.951121406590226 - +chr1 161530421 161530432 TGIF1_MA0796.1 -0.860552565815411 - +chr1 161707203 161707214 TGIF1_MA0796.1 -0.340606810029082 + +chr1 161766525 161766536 TGIF1_MA0796.1 2.278262738309317 + +chr1 162498463 162498474 TGIF1_MA0796.1 6.955351853639876 + +chr1 162498463 162498474 TGIF1_MA0796.1 1.406592542568952 - +chr1 162631058 162631069 TGIF1_MA0796.1 2.050769863666297 + +chr1 162631058 162631069 TGIF1_MA0796.1 2.201250709337869 - +chr1 162736736 162736747 TGIF1_MA0796.1 -0.157233704969808 - +chr1 167540147 167540158 TGIF1_MA0796.1 -0.193003440481488 + +chr1 167676395 167676406 TGIF1_MA0796.1 -0.695335384479880 - +chr1 168553889 168553900 TGIF1_MA0796.1 5.994515028454449 + +chr1 169012836 169012847 TGIF1_MA0796.1 4.541751023351779 + +chr1 169309445 169309456 TGIF1_MA0796.1 4.698169158795006 + +chr1 170074358 170074369 TGIF1_MA0796.1 1.128720150424114 + +chr1 172338477 172338488 TGIF1_MA0796.1 3.218941030625034 - +chr1 172449883 172449894 TGIF1_MA0796.1 2.084709764531134 + +chr1 173195675 173195686 TGIF1_MA0796.1 0.667045545467642 + +chr1 173429845 173429856 TGIF1_MA0796.1 -0.475875693927971 + +chr1 175307319 175307330 TGIF1_MA0796.1 -0.071816960075219 - +chr1 178094350 178094361 TGIF1_MA0796.1 0.687555860566087 + +chr1 178542469 178542480 TGIF1_MA0796.1 8.055295262458987 - +chr1 178973927 178973938 TGIF1_MA0796.1 0.346751720978047 + +chr1 179294187 179294198 TGIF1_MA0796.1 0.676745654825227 + +chr1 179317872 179317883 TGIF1_MA0796.1 -0.457908537470196 - +chr1 179317917 179317928 TGIF1_MA0796.1 0.344474738476147 - +chr1 179954367 179954378 TGIF1_MA0796.1 0.504070190156595 + +chr1 181033547 181033558 TGIF1_MA0796.1 1.451902663323326 - +chr1 181485665 181485676 TGIF1_MA0796.1 -0.456230528787233 - +chr1 181936485 181936496 TGIF1_MA0796.1 2.771114639607103 + +chr1 181936485 181936496 TGIF1_MA0796.1 0.378531430595078 - diff --git a/demo/known_tfbs_chr1_hg38/TGIF2_MA0797.1.bed b/demo/known_tfbs_chr1_hg38/TGIF2_MA0797.1.bed new file mode 100644 index 0000000..2861715 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/TGIF2_MA0797.1.bed @@ -0,0 +1,233 @@ +chr1 778986 778997 TGIF2_MA0797.1 5.097432764305791 - +chr1 1013580 1013591 TGIF2_MA0797.1 7.107499542393808 + +chr1 1013580 1013591 TGIF2_MA0797.1 7.554475978741102 - +chr1 2300486 2300497 TGIF2_MA0797.1 9.003895520472616 + +chr1 2300486 2300497 TGIF2_MA0797.1 7.585330952666498 - +chr1 2300546 2300557 TGIF2_MA0797.1 5.409525568496139 - +chr1 2548503 2548514 TGIF2_MA0797.1 5.251583602328439 - +chr1 2548549 2548560 TGIF2_MA0797.1 6.947805788957374 - +chr1 2578498 2578509 TGIF2_MA0797.1 5.251583602328437 + +chr1 2642897 2642908 TGIF2_MA0797.1 5.235092485298786 - +chr1 2683608 2683619 TGIF2_MA0797.1 5.517278001472730 + +chr1 2683608 2683619 TGIF2_MA0797.1 5.404981325229793 - +chr1 6603128 6603139 TGIF2_MA0797.1 8.231907675662544 + +chr1 8427574 8427585 TGIF2_MA0797.1 6.467608415598248 + +chr1 8427574 8427585 TGIF2_MA0797.1 7.452009578461488 - +chr1 9037600 9037611 TGIF2_MA0797.1 5.076155008340940 + +chr1 9429100 9429111 TGIF2_MA0797.1 7.991700712198928 + +chr1 9429100 9429111 TGIF2_MA0797.1 6.754686348013457 - +chr1 10032940 10032951 TGIF2_MA0797.1 5.656177434336487 + +chr1 10985399 10985410 TGIF2_MA0797.1 5.097528759499000 - +chr1 15617172 15617183 TGIF2_MA0797.1 5.261642454319020 - +chr1 16567081 16567092 TGIF2_MA0797.1 8.806580308553496 + +chr1 16567081 16567092 TGIF2_MA0797.1 8.265862846980996 - +chr1 16905600 16905611 TGIF2_MA0797.1 6.060399177816468 + +chr1 16905600 16905611 TGIF2_MA0797.1 9.743912785415830 - +chr1 19597358 19597369 TGIF2_MA0797.1 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51569537 TGIF2_MA0797.1 5.873772953514729 - +chr1 52404130 52404141 TGIF2_MA0797.1 5.982705138018903 - +chr1 52703356 52703367 TGIF2_MA0797.1 12.369004023982054 + +chr1 52703356 52703367 TGIF2_MA0797.1 11.919510038726187 - +chr1 56045334 56045345 TGIF2_MA0797.1 5.469028861889552 - +chr1 56106759 56106770 TGIF2_MA0797.1 6.383992931908245 - +chr1 59759583 59759594 TGIF2_MA0797.1 7.353687446747315 + +chr1 59759583 59759594 TGIF2_MA0797.1 6.511479828329006 - +chr1 60391079 60391090 TGIF2_MA0797.1 6.577926130782210 + +chr1 61641734 61641745 TGIF2_MA0797.1 5.223668883836677 + +chr1 61641734 61641745 TGIF2_MA0797.1 5.383409036689407 - +chr1 62810349 62810360 TGIF2_MA0797.1 5.438374365089227 - +chr1 63594294 63594305 TGIF2_MA0797.1 5.287319871420675 + +chr1 63594294 63594305 TGIF2_MA0797.1 5.446057877160811 - +chr1 64223668 64223679 TGIF2_MA0797.1 5.219744528921507 + +chr1 64744834 64744845 TGIF2_MA0797.1 5.032005874627766 + +chr1 64956968 64956979 TGIF2_MA0797.1 6.544895810169929 + +chr1 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TGIF2_MA0797.1 8.942922486047591 + +chr1 92538178 92538189 TGIF2_MA0797.1 8.037535572818086 - +chr1 92975720 92975731 TGIF2_MA0797.1 8.619306745540392 - +chr1 93878683 93878694 TGIF2_MA0797.1 8.023502554028955 + +chr1 93878683 93878694 TGIF2_MA0797.1 7.691875103072984 - +chr1 93908795 93908806 TGIF2_MA0797.1 6.119753053426745 + +chr1 96515604 96515615 TGIF2_MA0797.1 5.414342664666610 + +chr1 96722477 96722488 TGIF2_MA0797.1 5.970421083885681 + +chr1 96722477 96722488 TGIF2_MA0797.1 6.662762344469825 - +chr1 97864585 97864596 TGIF2_MA0797.1 5.854667891057528 + +chr1 97864585 97864596 TGIF2_MA0797.1 5.698952048642385 - +chr1 99685707 99685718 TGIF2_MA0797.1 6.467608415598248 + +chr1 99685707 99685718 TGIF2_MA0797.1 7.452009578461488 - +chr1 100046785 100046796 TGIF2_MA0797.1 5.668774843535344 + +chr1 100046785 100046796 TGIF2_MA0797.1 5.846231999695537 - +chr1 100046991 100047002 TGIF2_MA0797.1 5.314266053954987 - +chr1 101222160 101222171 TGIF2_MA0797.1 7.525191685819643 + +chr1 101222160 101222171 TGIF2_MA0797.1 6.167793238425711 - +chr1 101371329 101371340 TGIF2_MA0797.1 5.426250481444867 - +chr1 104878763 104878774 TGIF2_MA0797.1 5.789982006860466 + +chr1 107132759 107132770 TGIF2_MA0797.1 5.991863923225720 + +chr1 107132759 107132770 TGIF2_MA0797.1 10.307725642464959 - +chr1 107451522 107451533 TGIF2_MA0797.1 5.101880959020196 + +chr1 107777500 107777511 TGIF2_MA0797.1 6.731124424288786 - +chr1 107963688 107963699 TGIF2_MA0797.1 8.765859775109162 + +chr1 111738920 111738931 TGIF2_MA0797.1 5.789272222430563 - +chr1 113191972 113191983 TGIF2_MA0797.1 5.701469597550952 + +chr1 113191972 113191983 TGIF2_MA0797.1 5.852150342148962 - +chr1 113784239 113784250 TGIF2_MA0797.1 5.754017261365976 + +chr1 113929151 113929162 TGIF2_MA0797.1 6.034471864220700 - +chr1 114717092 114717103 TGIF2_MA0797.1 5.837527328861340 - +chr1 114780571 114780582 TGIF2_MA0797.1 6.663731319019495 + +chr1 114780571 114780582 TGIF2_MA0797.1 7.405496685587056 - +chr1 114780684 114780695 TGIF2_MA0797.1 5.993246971016720 + +chr1 115641720 115641731 TGIF2_MA0797.1 5.933896368767282 + +chr1 116110895 116110906 TGIF2_MA0797.1 11.436594166452007 + +chr1 116110895 116110906 TGIF2_MA0797.1 8.296315569333713 - +chr1 116288443 116288454 TGIF2_MA0797.1 15.313789734830625 + +chr1 116288443 116288454 TGIF2_MA0797.1 15.313789734830625 - +chr1 116504229 116504240 TGIF2_MA0797.1 5.773174378508800 + +chr1 116504229 116504240 TGIF2_MA0797.1 6.298619010198176 - +chr1 116738744 116738755 TGIF2_MA0797.1 5.289101812474037 - +chr1 119266637 119266648 TGIF2_MA0797.1 6.419915069141543 + +chr1 119266637 119266648 TGIF2_MA0797.1 6.213268359213963 - +chr1 119267028 119267039 TGIF2_MA0797.1 5.038924714438664 + +chr1 119267028 119267039 TGIF2_MA0797.1 5.220740039711650 - +chr1 121516708 121516719 TGIF2_MA0797.1 5.375165725899291 + +chr1 121516708 121516719 TGIF2_MA0797.1 5.824659711155154 - +chr1 125177492 125177503 TGIF2_MA0797.1 5.131828024725916 - +chr1 125179968 125179979 TGIF2_MA0797.1 5.131828024725916 - +chr1 125181769 125181780 TGIF2_MA0797.1 5.131828024725916 - +chr1 125183067 125183078 TGIF2_MA0797.1 5.131828024725916 - +chr1 125183524 125183535 TGIF2_MA0797.1 5.131828024725916 - +chr1 143184934 143184945 TGIF2_MA0797.1 5.131828024725916 + +chr1 143186707 143186718 TGIF2_MA0797.1 5.131828024725916 + +chr1 143193014 143193025 TGIF2_MA0797.1 5.131828024725916 + +chr1 143194780 143194791 TGIF2_MA0797.1 5.131828024725916 + +chr1 143195245 143195256 TGIF2_MA0797.1 5.131828024725916 + +chr1 143213741 143213752 TGIF2_MA0797.1 5.131828024725916 + +chr1 143214209 143214220 TGIF2_MA0797.1 5.131828024725916 + +chr1 143215984 143215995 TGIF2_MA0797.1 5.131828024725916 + +chr1 143231639 143231650 TGIF2_MA0797.1 5.131828024725916 + +chr1 143232107 143232118 TGIF2_MA0797.1 5.131828024725916 + +chr1 143237040 143237051 TGIF2_MA0797.1 5.131828024725916 + +chr1 143238150 143238161 TGIF2_MA0797.1 5.131828024725916 + +chr1 143245900 143245911 TGIF2_MA0797.1 5.131828024725916 - 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150611800 TGIF2_MA0797.1 5.177036732470285 - +chr1 152908465 152908476 TGIF2_MA0797.1 5.469028861889552 - +chr1 153599022 153599033 TGIF2_MA0797.1 5.228630603524376 + +chr1 153599022 153599033 TGIF2_MA0797.1 6.402465672898654 - +chr1 153842134 153842145 TGIF2_MA0797.1 5.706272594738135 + +chr1 153849772 153849783 TGIF2_MA0797.1 7.140700001681366 + +chr1 154559641 154559652 TGIF2_MA0797.1 8.974724327877617 + +chr1 154559641 154559652 TGIF2_MA0797.1 8.974724327877617 - +chr1 154608614 154608625 TGIF2_MA0797.1 5.993246971016720 + +chr1 154859908 154859919 TGIF2_MA0797.1 5.965106898147352 + +chr1 154859908 154859919 TGIF2_MA0797.1 5.793791947426453 - +chr1 155227163 155227174 TGIF2_MA0797.1 5.971819701343215 - +chr1 157653080 157653091 TGIF2_MA0797.1 7.272398691285476 + +chr1 157653080 157653091 TGIF2_MA0797.1 7.568694383034761 - +chr1 157806895 157806906 TGIF2_MA0797.1 7.755041302337022 + +chr1 157806895 157806906 TGIF2_MA0797.1 7.627543012400070 - +chr1 158831258 158831269 TGIF2_MA0797.1 5.728057570778881 + +chr1 161045183 161045194 TGIF2_MA0797.1 6.467608415598248 + +chr1 161045183 161045194 TGIF2_MA0797.1 7.452009578461488 - +chr1 161225983 161225994 TGIF2_MA0797.1 7.019883297457413 + +chr1 161225983 161225994 TGIF2_MA0797.1 7.577317774519901 - +chr1 161530421 161530432 TGIF2_MA0797.1 5.285176071582650 - +chr1 161766525 161766536 TGIF2_MA0797.1 6.910735311464797 + +chr1 162498463 162498474 TGIF2_MA0797.1 8.914991272180890 + +chr1 162498463 162498474 TGIF2_MA0797.1 6.938915988799813 - diff --git a/demo/known_tfbs_chr1_hg38/THAP1_MA0597.1.bed b/demo/known_tfbs_chr1_hg38/THAP1_MA0597.1.bed new file mode 100644 index 0000000..7c9d135 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/THAP1_MA0597.1.bed @@ -0,0 +1,467 @@ +chr1 181520 181528 THAP1_MA0597.1 6.669739749203089 - +chr1 827137 827145 THAP1_MA0597.1 7.035064217961685 + +chr1 1157466 1157474 THAP1_MA0597.1 6.889368271926072 + +chr1 1231984 1231992 THAP1_MA0597.1 6.889368271926072 - +chr1 1407556 1407564 THAP1_MA0597.1 7.584171770655395 - +chr1 1778651 1778659 THAP1_MA0597.1 6.640304928889968 - +chr1 1890919 1890927 THAP1_MA0597.1 7.867534075603542 - +chr1 1891086 1891094 THAP1_MA0597.1 7.867534075603542 + +chr1 2133300 2133308 THAP1_MA0597.1 6.889368271926072 + +chr1 2195002 2195010 THAP1_MA0597.1 7.318426522909832 - +chr1 2526785 2526793 THAP1_MA0597.1 6.889368271926072 - +chr1 2555924 2555932 THAP1_MA0597.1 7.035064217961685 - +chr1 2586349 2586357 THAP1_MA0597.1 6.640304928889968 + +chr1 3676869 3676877 THAP1_MA0597.1 7.373876462699396 - +chr1 3676878 3676886 THAP1_MA0597.1 7.035064217961685 + +chr1 3796365 3796373 THAP1_MA0597.1 6.889368271926072 + +chr1 3796488 3796496 THAP1_MA0597.1 7.015322447624786 - +chr1 3857158 3857166 THAP1_MA0597.1 7.154247939976413 + +chr1 3901184 3901192 THAP1_MA0597.1 6.889368271926072 - +chr1 6026027 6026035 THAP1_MA0597.1 7.035064217961685 + +chr1 6205692 6205700 THAP1_MA0597.1 6.640304928889968 + +chr1 6236017 6236025 THAP1_MA0597.1 7.867534075603542 + +chr1 6359890 6359898 THAP1_MA0597.1 6.722689756496607 - +chr1 7771639 7771647 THAP1_MA0597.1 6.640304928889968 + +chr1 7771643 7771651 THAP1_MA0597.1 6.889368271926072 + +chr1 7784054 7784062 THAP1_MA0597.1 6.640304928889968 + +chr1 8703154 8703162 THAP1_MA0597.1 6.640304928889968 - +chr1 8878882 8878890 THAP1_MA0597.1 6.640304928889968 - +chr1 9539591 9539599 THAP1_MA0597.1 7.584171770655395 - +chr1 9588834 9588842 THAP1_MA0597.1 6.640304928889968 + +chr1 9588842 9588850 THAP1_MA0597.1 6.640304928889968 + +chr1 9588850 9588858 THAP1_MA0597.1 6.640304928889968 + +chr1 9588858 9588866 THAP1_MA0597.1 6.640304928889968 + +chr1 9687665 9687673 THAP1_MA0597.1 6.889368271926072 - +chr1 9689510 9689518 THAP1_MA0597.1 6.795693924901803 + +chr1 9910406 9910414 THAP1_MA0597.1 6.889368271926072 - +chr1 10210536 10210544 THAP1_MA0597.1 6.889368271926072 - +chr1 10965120 10965128 THAP1_MA0597.1 7.584171770655395 + +chr1 11059759 11059767 THAP1_MA0597.1 7.867534075603542 - +chr1 11099648 11099656 THAP1_MA0597.1 6.824768910005687 + +chr1 11273069 11273077 THAP1_MA0597.1 6.640304928889968 + +chr1 11908573 11908581 THAP1_MA0597.1 7.035064217961685 - +chr1 11934572 11934580 THAP1_MA0597.1 6.722689756496607 + +chr1 12079542 12079550 THAP1_MA0597.1 7.318426522909832 - +chr1 12162305 12162313 THAP1_MA0597.1 7.584171770655395 + +chr1 13700640 13700648 THAP1_MA0597.1 6.889368271926072 - +chr1 14913809 14913817 THAP1_MA0597.1 6.640304928889968 - +chr1 14914056 14914064 THAP1_MA0597.1 6.824768910005687 - +chr1 15524616 15524624 THAP1_MA0597.1 6.889368271926072 + +chr1 15617978 15617986 THAP1_MA0597.1 7.584171770655395 + +chr1 15848117 15848125 THAP1_MA0597.1 6.685223180814969 - +chr1 15975430 15975438 THAP1_MA0597.1 6.889368271926072 + +chr1 16237173 16237181 THAP1_MA0597.1 7.015322447624786 - +chr1 16352969 16352977 THAP1_MA0597.1 6.896701034948701 + +chr1 16367095 16367103 THAP1_MA0597.1 6.722689756496607 + +chr1 16367888 16367896 THAP1_MA0597.1 7.373876462699396 - +chr1 16421032 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179882527 THAP1_MA0597.1 6.640304928889968 - +chr1 179882534 179882542 THAP1_MA0597.1 6.685223180814969 - +chr1 180154826 180154834 THAP1_MA0597.1 6.889368271926072 - +chr1 180230077 180230085 THAP1_MA0597.1 6.640304928889968 + +chr1 181022252 181022260 THAP1_MA0597.1 6.824768910005687 + +chr1 181022582 181022590 THAP1_MA0597.1 7.867534075603542 - +chr1 181190379 181190387 THAP1_MA0597.1 7.373876462699396 + +chr1 181936505 181936513 THAP1_MA0597.1 6.731960142676641 + +chr1 182030105 182030113 THAP1_MA0597.1 7.867534075603542 - +chr1 182589027 182589035 THAP1_MA0597.1 7.318426522909832 - +chr1 182616027 182616035 THAP1_MA0597.1 7.364543247932412 - +chr1 182789422 182789430 THAP1_MA0597.1 6.630772105562945 + +chr1 182839651 182839659 THAP1_MA0597.1 7.318426522909832 - +chr1 183023704 183023712 THAP1_MA0597.1 6.889368271926072 - +chr1 183590281 183590289 THAP1_MA0597.1 7.015322447624786 + +chr1 183604578 183604586 THAP1_MA0597.1 7.373876462699396 + +chr1 184386785 184386793 THAP1_MA0597.1 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202144691 THAP1_MA0597.1 6.889368271926072 - +chr1 202348615 202348623 THAP1_MA0597.1 6.722689756496607 - +chr1 202348692 202348700 THAP1_MA0597.1 6.889368271926072 - +chr1 202348904 202348912 THAP1_MA0597.1 6.640304928889968 - +chr1 202927064 202927072 THAP1_MA0597.1 6.731960142676641 + +chr1 203305512 203305520 THAP1_MA0597.1 7.318426522909832 - +chr1 203626787 203626795 THAP1_MA0597.1 6.685223180814969 + +chr1 203861779 203861787 THAP1_MA0597.1 7.584171770655395 - +chr1 205631796 205631804 THAP1_MA0597.1 6.630772105562945 + +chr1 205631806 205631814 THAP1_MA0597.1 6.889368271926072 + +chr1 205632073 205632081 THAP1_MA0597.1 7.015322447624786 + +chr1 205680128 205680136 THAP1_MA0597.1 6.640304928889968 + +chr1 206471224 206471232 THAP1_MA0597.1 7.035064217961685 - diff --git a/demo/known_tfbs_chr1_hg38/TP53_MA0106.3.bed b/demo/known_tfbs_chr1_hg38/TP53_MA0106.3.bed new file mode 100644 index 0000000..4914636 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/TP53_MA0106.3.bed @@ -0,0 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116738848 TP53_MA0106.3 7.377596599751987 - +chr1 116769851 116769868 TP53_MA0106.3 4.108294120847567 - +chr1 117367396 117367413 TP53_MA0106.3 5.041393456199261 + +chr1 145859144 145859161 TP53_MA0106.3 4.251244241378076 + +chr1 145859144 145859161 TP53_MA0106.3 4.103402938085283 - +chr1 153958620 153958637 TP53_MA0106.3 4.125479931413297 + +chr1 154559141 154559158 TP53_MA0106.3 4.099009416258851 + +chr1 154937276 154937293 TP53_MA0106.3 4.059273810075851 - +chr1 155563006 155563023 TP53_MA0106.3 4.055788585406662 + +chr1 156456679 156456696 TP53_MA0106.3 4.933954256479863 + +chr1 157403353 157403370 TP53_MA0106.3 5.213304327309494 - +chr1 159009324 159009341 TP53_MA0106.3 6.223259427729467 + +chr1 159009324 159009341 TP53_MA0106.3 6.177317224705540 - +chr1 159009935 159009952 TP53_MA0106.3 5.397099471026933 + +chr1 159009935 159009952 TP53_MA0106.3 4.457897751847957 - +chr1 159910498 159910515 TP53_MA0106.3 5.456735165997328 - diff --git a/demo/known_tfbs_chr1_hg38/TP63_MA0525.2.bed b/demo/known_tfbs_chr1_hg38/TP63_MA0525.2.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/TP73_MA0861.1.bed b/demo/known_tfbs_chr1_hg38/TP73_MA0861.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/TWIST1_MA1123.1.bed b/demo/known_tfbs_chr1_hg38/TWIST1_MA1123.1.bed new file mode 100644 index 0000000..a873f05 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/TWIST1_MA1123.1.bed @@ -0,0 +1,231 @@ +chr1 1013579 1013591 TWIST1_MA1123.1 8.113655762887589 + +chr1 1033025 1033037 TWIST1_MA1123.1 8.303520264589405 + +chr1 1511996 1512008 TWIST1_MA1123.1 8.306760915630104 + +chr1 3857593 3857605 TWIST1_MA1123.1 8.799776330461018 - +chr1 6026154 6026166 TWIST1_MA1123.1 7.985184712229835 - +chr1 6026368 6026380 TWIST1_MA1123.1 8.188227989439001 + +chr1 6490093 6490105 TWIST1_MA1123.1 8.097356510036848 + +chr1 8097821 8097833 TWIST1_MA1123.1 7.783330226357901 - +chr1 8283443 8283455 TWIST1_MA1123.1 7.375865118678573 - +chr1 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66335640 TWIST1_MA1123.1 8.216538278794665 + +chr1 66397196 66397208 TWIST1_MA1123.1 7.785622481500965 - +chr1 66402533 66402545 TWIST1_MA1123.1 9.882465503985674 - +chr1 66758310 66758322 TWIST1_MA1123.1 8.556386204232943 + +chr1 67736129 67736141 TWIST1_MA1123.1 7.674370847980182 - +chr1 68443066 68443078 TWIST1_MA1123.1 7.684596660231502 - +chr1 69320862 69320874 TWIST1_MA1123.1 8.500090085827621 + +chr1 69382904 69382916 TWIST1_MA1123.1 9.812143823419742 - +chr1 70205684 70205696 TWIST1_MA1123.1 10.405604453746870 + +chr1 70685529 70685541 TWIST1_MA1123.1 7.981781732421237 + +chr1 70685724 70685736 TWIST1_MA1123.1 8.609342524522987 + +chr1 72433362 72433374 TWIST1_MA1123.1 8.622213200873727 + +chr1 76154895 76154907 TWIST1_MA1123.1 7.435367769410742 - +chr1 76425618 76425630 TWIST1_MA1123.1 7.637412608162174 - +chr1 76939300 76939312 TWIST1_MA1123.1 8.184651594577273 + +chr1 77219247 77219259 TWIST1_MA1123.1 7.907137895949505 - +chr1 77413552 77413564 TWIST1_MA1123.1 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84620937 TWIST1_MA1123.1 8.693758266479916 - +chr1 84862470 84862482 TWIST1_MA1123.1 8.054682543442505 - +chr1 84863014 84863026 TWIST1_MA1123.1 7.743515808755076 + +chr1 84944850 84944862 TWIST1_MA1123.1 9.838866855547648 + +chr1 85048008 85048020 TWIST1_MA1123.1 8.719446440307518 - +chr1 85200673 85200685 TWIST1_MA1123.1 7.775141984716885 + +chr1 85298498 85298510 TWIST1_MA1123.1 10.261403535210526 + +chr1 85335141 85335153 TWIST1_MA1123.1 7.419042552217672 + +chr1 87057906 87057918 TWIST1_MA1123.1 9.098834612543058 - +chr1 87058067 87058079 TWIST1_MA1123.1 9.049623044239715 - +chr1 89041222 89041234 TWIST1_MA1123.1 8.153534255788150 - +chr1 89041408 89041420 TWIST1_MA1123.1 8.378667514019796 - +chr1 89525414 89525426 TWIST1_MA1123.1 7.926422729798373 + +chr1 89681453 89681465 TWIST1_MA1123.1 7.563454410569338 - +chr1 89694385 89694397 TWIST1_MA1123.1 8.701584764770310 + +chr1 89719793 89719805 TWIST1_MA1123.1 7.559237804150316 + +chr1 89781571 89781583 TWIST1_MA1123.1 10.237003005793900 - +chr1 89781765 89781777 TWIST1_MA1123.1 9.685269976056148 - +chr1 91165404 91165416 TWIST1_MA1123.1 7.490369636743094 + +chr1 91165981 91165993 TWIST1_MA1123.1 10.625253920559871 + +chr1 91500909 91500921 TWIST1_MA1123.1 7.546920367159101 - +chr1 91501104 91501116 TWIST1_MA1123.1 8.664228039749432 - +chr1 92485744 92485756 TWIST1_MA1123.1 10.187902777018079 + +chr1 93179614 93179626 TWIST1_MA1123.1 7.448354284387284 - +chr1 93345649 93345661 TWIST1_MA1123.1 9.084516367215873 + +chr1 93345945 93345957 TWIST1_MA1123.1 8.149602778700494 - +chr1 93703929 93703941 TWIST1_MA1123.1 7.475044152064096 - +chr1 94962745 94962757 TWIST1_MA1123.1 9.993834694932369 + +chr1 95043362 95043374 TWIST1_MA1123.1 7.906472506888838 - +chr1 95095991 95096003 TWIST1_MA1123.1 8.214714920005701 + +chr1 96722476 96722488 TWIST1_MA1123.1 7.816232722825820 + +chr1 97159415 97159427 TWIST1_MA1123.1 10.022991464823411 - +chr1 97848557 97848569 TWIST1_MA1123.1 7.933646406408801 + +chr1 97864584 97864596 TWIST1_MA1123.1 8.746868644175432 + +chr1 97920409 97920421 TWIST1_MA1123.1 8.273561513733005 + +chr1 98871613 98871625 TWIST1_MA1123.1 7.575618620065411 - +chr1 99758757 99758769 TWIST1_MA1123.1 8.853809244294714 + +chr1 100037776 100037788 TWIST1_MA1123.1 7.704557842208137 - +chr1 100046821 100046833 TWIST1_MA1123.1 8.051872164264164 - +chr1 100351750 100351762 TWIST1_MA1123.1 8.782309999646374 + +chr1 100523396 100523408 TWIST1_MA1123.1 8.773763247520275 - +chr1 100896654 100896666 TWIST1_MA1123.1 8.264026795872708 - +chr1 101235730 101235742 TWIST1_MA1123.1 7.593684553556370 - +chr1 101371288 101371300 TWIST1_MA1123.1 7.778017384993706 - +chr1 104388239 104388251 TWIST1_MA1123.1 8.869254691924828 + +chr1 104467937 104467949 TWIST1_MA1123.1 10.668682106042400 + +chr1 104747064 104747076 TWIST1_MA1123.1 9.029388006317472 - +chr1 104932409 104932421 TWIST1_MA1123.1 7.980746874120930 - +chr1 107057057 107057069 TWIST1_MA1123.1 8.322198189231031 - +chr1 107057306 107057318 TWIST1_MA1123.1 8.067349817702299 + +chr1 107057579 107057591 TWIST1_MA1123.1 8.681250842528263 - +chr1 107132699 107132711 TWIST1_MA1123.1 8.303532866652988 - +chr1 107529773 107529785 TWIST1_MA1123.1 8.773101155398225 - +chr1 107964669 107964681 TWIST1_MA1123.1 7.454996787057106 - +chr1 108560753 108560765 TWIST1_MA1123.1 8.976337706409987 + +chr1 108561172 108561184 TWIST1_MA1123.1 8.427095094892248 + +chr1 110630937 110630949 TWIST1_MA1123.1 8.242467905709670 + +chr1 110631443 110631455 TWIST1_MA1123.1 8.133420161189026 + +chr1 111600979 111600991 TWIST1_MA1123.1 8.000151945581333 + +chr1 111601024 111601036 TWIST1_MA1123.1 7.579620743469817 - +chr1 112957435 112957447 TWIST1_MA1123.1 8.533098329430382 - +chr1 113031441 113031453 TWIST1_MA1123.1 8.556386204232943 + +chr1 113191971 113191983 TWIST1_MA1123.1 8.695704711784684 + +chr1 113929150 113929162 TWIST1_MA1123.1 8.066760715498013 + +chr1 114757261 114757273 TWIST1_MA1123.1 10.082035166409179 + +chr1 115649584 115649596 TWIST1_MA1123.1 10.446967872692035 - +chr1 115976672 115976684 TWIST1_MA1123.1 9.688397266515876 + +chr1 116597102 116597114 TWIST1_MA1123.1 7.517423574015871 - +chr1 116737660 116737672 TWIST1_MA1123.1 9.703446123332052 + +chr1 119266887 119266899 TWIST1_MA1123.1 8.795310146973877 + +chr1 119675735 119675747 TWIST1_MA1123.1 8.212404580281243 - +chr1 120415221 120415233 TWIST1_MA1123.1 8.779893771739280 - +chr1 120942275 120942287 TWIST1_MA1123.1 7.387524370304584 - +chr1 120942848 120942860 TWIST1_MA1123.1 7.441909661698572 - +chr1 144523913 144523925 TWIST1_MA1123.1 7.634480422319268 - +chr1 144524334 144524346 TWIST1_MA1123.1 7.488583527422696 + +chr1 144546110 144546122 TWIST1_MA1123.1 7.748657367094208 - +chr1 145215932 145215944 TWIST1_MA1123.1 10.648064798181334 + +chr1 145858933 145858945 TWIST1_MA1123.1 8.880201335598572 + +chr1 146035970 146035982 TWIST1_MA1123.1 7.554436495364076 + +chr1 146037265 146037277 TWIST1_MA1123.1 9.440055009269082 - +chr1 146037642 146037654 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TWIST1_MA1123.1 7.887253000955543 - +chr1 155934526 155934538 TWIST1_MA1123.1 8.032960213750812 - +chr1 156226415 156226427 TWIST1_MA1123.1 7.562075038333655 - +chr1 157176996 157177008 TWIST1_MA1123.1 8.147071470598808 + +chr1 157833301 157833313 TWIST1_MA1123.1 7.946612353470774 + +chr1 158831258 158831270 TWIST1_MA1123.1 7.580187038613868 - +chr1 159121877 159121889 TWIST1_MA1123.1 8.574350118069956 - +chr1 159890070 159890082 TWIST1_MA1123.1 8.140421372808325 - +chr1 159890126 159890138 TWIST1_MA1123.1 8.256261917787070 - diff --git a/demo/known_tfbs_chr1_hg38/T_MA0009.2.bed b/demo/known_tfbs_chr1_hg38/T_MA0009.2.bed new file mode 100644 index 0000000..6b9a308 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/T_MA0009.2.bed @@ -0,0 +1,125 @@ +chr1 3677205 3677220 T_MA0009.2 6.283024128551499 + +chr1 3677205 3677220 T_MA0009.2 6.046089042599862 - +chr1 6822621 6822636 T_MA0009.2 6.845021506744260 + +chr1 6822621 6822636 T_MA0009.2 7.215345655970532 - +chr1 7961235 7961250 T_MA0009.2 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Tcf12_MA0521.1 8.389823022698916 + +chr1 18927669 18927679 Tcf12_MA0521.1 8.991381021984504 - +chr1 18956075 18956085 Tcf12_MA0521.1 9.760856458875928 - +chr1 19210090 19210100 Tcf12_MA0521.1 8.330226269615496 - +chr1 19312696 19312706 Tcf12_MA0521.1 10.678188760369494 - +chr1 19312697 19312707 Tcf12_MA0521.1 7.985202577079878 + +chr1 19800067 19800077 Tcf12_MA0521.1 7.919806571865969 - +chr1 21293757 21293767 Tcf12_MA0521.1 8.685474004312733 - +chr1 21293758 21293768 Tcf12_MA0521.1 9.661997828853645 + +chr1 21345458 21345468 Tcf12_MA0521.1 8.994291827928123 - +chr1 21783074 21783084 Tcf12_MA0521.1 8.617151996985404 + +chr1 22025630 22025640 Tcf12_MA0521.1 7.767342217714633 - +chr1 22025631 22025641 Tcf12_MA0521.1 8.864167240435680 + +chr1 23168810 23168820 Tcf12_MA0521.1 8.099050240100008 - +chr1 23368383 23368393 Tcf12_MA0521.1 9.464715907523567 - +chr1 23368384 23368394 Tcf12_MA0521.1 8.672986041625103 + +chr1 23743876 23743886 Tcf12_MA0521.1 9.290244279930951 - +chr1 23909015 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Tcf12_MA0521.1 10.377950981840186 + +chr1 39996190 39996200 Tcf12_MA0521.1 8.232383833359876 + +chr1 40161560 40161570 Tcf12_MA0521.1 9.574897826743786 + +chr1 40186554 40186564 Tcf12_MA0521.1 7.840687616164960 + +chr1 40373747 40373757 Tcf12_MA0521.1 9.464715907523567 - +chr1 40373748 40373758 Tcf12_MA0521.1 8.940498004449536 + +chr1 40450692 40450702 Tcf12_MA0521.1 9.760856458875928 - +chr1 40477317 40477327 Tcf12_MA0521.1 9.946651375666480 + +chr1 40628583 40628593 Tcf12_MA0521.1 8.609061521637866 - +chr1 40709086 40709096 Tcf12_MA0521.1 9.656799646183153 - +chr1 41003886 41003896 Tcf12_MA0521.1 8.019701877793839 - +chr1 41574370 41574380 Tcf12_MA0521.1 9.050125872567822 - +chr1 41574371 41574381 Tcf12_MA0521.1 8.177761915464160 + +chr1 41728820 41728830 Tcf12_MA0521.1 8.858944673757245 - +chr1 41728821 41728831 Tcf12_MA0521.1 9.875135605273094 + +chr1 41728950 41728960 Tcf12_MA0521.1 9.585283875789766 - +chr1 41728951 41728961 Tcf12_MA0521.1 10.061094237405236 + +chr1 42334827 42334837 Tcf12_MA0521.1 8.236601330773588 + +chr1 42463087 42463097 Tcf12_MA0521.1 9.035825026728489 - +chr1 42463322 42463332 Tcf12_MA0521.1 8.285008872232149 + +chr1 42682524 42682534 Tcf12_MA0521.1 9.655897106334145 - +chr1 42682525 42682535 Tcf12_MA0521.1 8.291560120788663 + +chr1 42924588 42924598 Tcf12_MA0521.1 9.094613275885063 - +chr1 42924589 42924599 Tcf12_MA0521.1 7.990425143758314 + +chr1 42924716 42924726 Tcf12_MA0521.1 9.131679203260113 + +chr1 43836620 43836630 Tcf12_MA0521.1 8.994291827928123 + +chr1 43853540 43853550 Tcf12_MA0521.1 8.127976234431895 - +chr1 43853541 43853551 Tcf12_MA0521.1 9.505032973634590 + +chr1 43853865 43853875 Tcf12_MA0521.1 8.759925654337419 - +chr1 44213509 44213519 Tcf12_MA0521.1 9.946651375666480 - +chr1 44674101 44674111 Tcf12_MA0521.1 7.777908169138577 + +chr1 44775462 44775472 Tcf12_MA0521.1 7.859461499830870 + +chr1 45011207 45011217 Tcf12_MA0521.1 9.875135605273094 - +chr1 45011208 45011218 Tcf12_MA0521.1 9.650674539655709 + +chr1 45011303 45011313 Tcf12_MA0521.1 10.081974145829415 + +chr1 45012255 45012265 Tcf12_MA0521.1 8.710922196385830 + +chr1 45394289 45394299 Tcf12_MA0521.1 8.945884286469560 + +chr1 45394314 45394324 Tcf12_MA0521.1 7.931129861063905 + +chr1 45491125 45491135 Tcf12_MA0521.1 8.979164153276368 + +chr1 45544213 45544223 Tcf12_MA0521.1 9.746001561934660 + +chr1 45550551 45550561 Tcf12_MA0521.1 9.608392104724590 - +chr1 45583455 45583465 Tcf12_MA0521.1 8.301232492702409 - +chr1 45584317 45584327 Tcf12_MA0521.1 10.202378398754025 - +chr1 45584318 45584328 Tcf12_MA0521.1 8.461012938695347 + +chr1 46668063 46668073 Tcf12_MA0521.1 8.969126592977464 + +chr1 46668188 46668198 Tcf12_MA0521.1 8.006930957983771 - +chr1 46668189 46668199 Tcf12_MA0521.1 8.006930957983771 + +chr1 47436583 47436593 Tcf12_MA0521.1 8.759925654337419 + +chr1 48472171 48472181 Tcf12_MA0521.1 8.285008872232149 + +chr1 50960413 50960423 Tcf12_MA0521.1 8.773495588931576 - +chr1 50968419 50968429 Tcf12_MA0521.1 9.284143557411451 + 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Tcf12_MA0521.1 9.875135605273094 + +chr1 62613402 62613412 Tcf12_MA0521.1 8.657469063096427 - +chr1 62687565 62687575 Tcf12_MA0521.1 9.470841014051011 + +chr1 62783973 62783983 Tcf12_MA0521.1 8.003403941789198 + +chr1 62784508 62784518 Tcf12_MA0521.1 9.977917333136640 - +chr1 62784509 62784519 Tcf12_MA0521.1 8.209663642697263 + +chr1 63124769 63124779 Tcf12_MA0521.1 7.990425143758314 - +chr1 63124770 63124780 Tcf12_MA0521.1 8.302883409986599 + +chr1 63523424 63523434 Tcf12_MA0521.1 8.477558794571719 - +chr1 63523559 63523569 Tcf12_MA0521.1 7.925931678393414 - +chr1 63523685 63523695 Tcf12_MA0521.1 9.656799646183153 - +chr1 63593413 63593423 Tcf12_MA0521.1 10.132610007798622 + +chr1 64895618 64895628 Tcf12_MA0521.1 10.088099252356859 + +chr1 65147803 65147813 Tcf12_MA0521.1 8.050642698641447 + +chr1 65215670 65215680 Tcf12_MA0521.1 7.791342834554440 + +chr1 65812387 65812397 Tcf12_MA0521.1 8.980057732786568 - +chr1 66247993 66248003 Tcf12_MA0521.1 7.971294336335278 - +chr1 66335793 66335803 Tcf12_MA0521.1 8.568744455526842 - +chr1 66336192 66336202 Tcf12_MA0521.1 9.366045376850817 - +chr1 66336193 66336203 Tcf12_MA0521.1 8.701979818538190 + +chr1 66350303 66350313 Tcf12_MA0521.1 8.438230564157477 + +chr1 66397197 66397207 Tcf12_MA0521.1 9.586221115941722 + +chr1 66402434 66402444 Tcf12_MA0521.1 9.576548744027976 - +chr1 66930512 66930522 Tcf12_MA0521.1 8.051811483247759 - +chr1 66984648 66984658 Tcf12_MA0521.1 8.294158211121534 + +chr1 67112470 67112480 Tcf12_MA0521.1 7.840687616164960 + +chr1 67760212 67760222 Tcf12_MA0521.1 7.911076781452147 - +chr1 68181437 68181447 Tcf12_MA0521.1 9.576548744027976 - +chr1 68496452 68496462 Tcf12_MA0521.1 9.661997828853645 - +chr1 68496453 68496463 Tcf12_MA0521.1 8.161256101238703 + +chr1 69967420 69967430 Tcf12_MA0521.1 8.746860343802178 - +chr1 69967445 69967455 Tcf12_MA0521.1 7.899778565941890 + +chr1 70354868 70354878 Tcf12_MA0521.1 8.759925654337419 - +chr1 70685806 70685816 Tcf12_MA0521.1 9.743551159545936 - +chr1 70685906 70685916 Tcf12_MA0521.1 9.562978809433819 + +chr1 72433110 72433120 Tcf12_MA0521.1 9.503382056350400 - +chr1 74198280 74198290 Tcf12_MA0521.1 9.126456636581677 - +chr1 74198281 74198291 Tcf12_MA0521.1 9.350917702199062 + +chr1 74734084 74734094 Tcf12_MA0521.1 8.467138045222791 + +chr1 75339240 75339250 Tcf12_MA0521.1 8.398399797219794 + +chr1 75614970 75614980 Tcf12_MA0521.1 7.862858604947828 - +chr1 75797135 75797145 Tcf12_MA0521.1 7.840687616164960 - +chr1 75908894 75908904 Tcf12_MA0521.1 8.204757970076972 - +chr1 76425319 76425329 Tcf12_MA0521.1 9.536876334331204 - +chr1 76425320 76425330 Tcf12_MA0521.1 10.061094237405236 + +chr1 76871515 76871525 Tcf12_MA0521.1 8.271049982186709 + +chr1 76939371 76939381 Tcf12_MA0521.1 7.948186107400452 + +chr1 77282054 77282064 Tcf12_MA0521.1 8.176383775890455 - +chr1 77282055 77282065 Tcf12_MA0521.1 9.029222612019121 + +chr1 77539107 77539117 Tcf12_MA0521.1 8.285008872232149 - +chr1 77927156 77927166 Tcf12_MA0521.1 8.945884286469560 - 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Tcf12_MA0521.1 7.703782373510846 - +chr1 104932554 104932564 Tcf12_MA0521.1 9.052330840953946 + +chr1 104932567 104932577 Tcf12_MA0521.1 8.122311059874482 - +chr1 104932677 104932687 Tcf12_MA0521.1 7.911266146406390 - +chr1 104987682 104987692 Tcf12_MA0521.1 9.190129663118258 + +chr1 107057155 107057165 Tcf12_MA0521.1 8.026646248297101 + +chr1 107057543 107057553 Tcf12_MA0521.1 10.132610007798622 - +chr1 107777653 107777663 Tcf12_MA0521.1 8.979436930986855 + +chr1 107777692 107777702 Tcf12_MA0521.1 7.971294336335278 - +chr1 107964730 107964740 Tcf12_MA0521.1 8.754703087658983 + +chr1 108560223 108560233 Tcf12_MA0521.1 9.655897106334145 - +chr1 108560224 108560234 Tcf12_MA0521.1 8.291560120788663 + +chr1 108661409 108661419 Tcf12_MA0521.1 10.453727694752109 - +chr1 108661410 108661420 Tcf12_MA0521.1 8.685474004312733 + +chr1 108692647 108692657 Tcf12_MA0521.1 8.773495588931576 - +chr1 109213875 109213885 Tcf12_MA0521.1 8.401742040008882 - +chr1 109283700 109283710 Tcf12_MA0521.1 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119140576 Tcf12_MA0521.1 8.226169456922721 - +chr1 119140567 119140577 Tcf12_MA0521.1 9.841855738466286 + +chr1 119140789 119140799 Tcf12_MA0521.1 7.724568689766828 + +chr1 119323854 119323864 Tcf12_MA0521.1 9.083405739374630 - +chr1 119323855 119323865 Tcf12_MA0521.1 8.858944673757245 + +chr1 119647666 119647676 Tcf12_MA0521.1 9.100738382412507 + +chr1 120176486 120176496 Tcf12_MA0521.1 8.969126592977464 - +chr1 120415327 120415337 Tcf12_MA0521.1 8.122311059874482 + +chr1 120558433 120558443 Tcf12_MA0521.1 10.087196712507851 - +chr1 120851095 120851105 Tcf12_MA0521.1 8.389823022698916 + +chr1 120942276 120942286 Tcf12_MA0521.1 9.514705345548336 + +chr1 120942482 120942492 Tcf12_MA0521.1 8.761576571621610 - +chr1 121097715 121097725 Tcf12_MA0521.1 9.422433472592449 - +chr1 121516708 121516718 Tcf12_MA0521.1 9.476039196721503 - +chr1 144461348 144461358 Tcf12_MA0521.1 8.122311059874482 - +chr1 144524144 144524154 Tcf12_MA0521.1 8.389823022698916 + +chr1 144524335 144524345 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Tcf12_MA0521.1 7.724568689766828 + +chr1 167617559 167617569 Tcf12_MA0521.1 9.576548744027976 + +chr1 167628211 167628221 Tcf12_MA0521.1 9.608392104724590 + +chr1 167936108 167936118 Tcf12_MA0521.1 8.183976291901315 + +chr1 167936933 167936943 Tcf12_MA0521.1 7.709713792825562 - +chr1 168466289 168466299 Tcf12_MA0521.1 8.746860343802178 + +chr1 169012837 169012847 Tcf12_MA0521.1 7.859461499830870 + +chr1 169025292 169025302 Tcf12_MA0521.1 9.052330840953946 + +chr1 169105811 169105821 Tcf12_MA0521.1 8.201117875889716 + +chr1 169309446 169309456 Tcf12_MA0521.1 9.144450123070182 + +chr1 169367976 169367986 Tcf12_MA0521.1 9.606163784213946 + +chr1 169594873 169594883 Tcf12_MA0521.1 9.576548744027976 + +chr1 169692869 169692879 Tcf12_MA0521.1 9.608392104724590 + +chr1 169909071 169909081 Tcf12_MA0521.1 8.711652190451936 + +chr1 170126942 170126952 Tcf12_MA0521.1 10.678188760369494 + +chr1 170127218 170127228 Tcf12_MA0521.1 9.854626658276354 - +chr1 170853701 170853711 Tcf12_MA0521.1 8.945884286469560 - +chr1 170882104 170882114 Tcf12_MA0521.1 7.812222742978621 - +chr1 170932243 170932253 Tcf12_MA0521.1 9.748937441565960 + +chr1 171251633 171251643 Tcf12_MA0521.1 9.133279424711896 - +chr1 171251887 171251897 Tcf12_MA0521.1 8.330226269615496 + +chr1 171314116 171314126 Tcf12_MA0521.1 8.954271696036196 + +chr1 172343407 172343417 Tcf12_MA0521.1 9.853733078766155 - +chr1 172393621 172393631 Tcf12_MA0521.1 8.259843637281490 + +chr1 172444007 172444017 Tcf12_MA0521.1 8.110987770676546 + +chr1 172450120 172450130 Tcf12_MA0521.1 7.877524136934852 - +chr1 172746442 172746452 Tcf12_MA0521.1 7.777908169138577 + +chr1 173429916 173429926 Tcf12_MA0521.1 8.045420131963011 - +chr1 174022016 174022026 Tcf12_MA0521.1 8.466235505373783 - +chr1 174022017 174022027 Tcf12_MA0521.1 8.302883409986599 + +chr1 174159951 174159961 Tcf12_MA0521.1 9.204795195105282 - +chr1 175192362 175192372 Tcf12_MA0521.1 9.574897826743786 + +chr1 175209366 175209376 Tcf12_MA0521.1 8.281179413090650 + 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179551404 Tcf12_MA0521.1 8.050642698641447 - +chr1 179882264 179882274 Tcf12_MA0521.1 8.093827673421572 + +chr1 180631835 180631845 Tcf12_MA0521.1 8.942948406838260 + +chr1 181022759 181022769 Tcf12_MA0521.1 9.655897106334145 - +chr1 181022760 181022770 Tcf12_MA0521.1 7.815749759173194 + +chr1 181062407 181062417 Tcf12_MA0521.1 9.050679923669755 + +chr1 181062461 181062471 Tcf12_MA0521.1 8.201117875889716 + +chr1 181062872 181062882 Tcf12_MA0521.1 8.980057732786568 - +chr1 181153327 181153337 Tcf12_MA0521.1 8.853695853737847 + +chr1 181398610 181398620 Tcf12_MA0521.1 9.574897826743786 + +chr1 181430428 181430438 Tcf12_MA0521.1 8.297685227316107 - +chr1 181514643 181514653 Tcf12_MA0521.1 8.932655260592730 + +chr1 182390753 182390763 Tcf12_MA0521.1 9.760856458875928 + +chr1 182604223 182604233 Tcf12_MA0521.1 7.757848556573635 + +chr1 182604346 182604356 Tcf12_MA0521.1 7.791342834554440 + +chr1 182604534 182604544 Tcf12_MA0521.1 9.574897826743786 + +chr1 182616186 182616196 Tcf12_MA0521.1 8.594395989650842 + +chr1 182677601 182677611 Tcf12_MA0521.1 9.760856458875928 - +chr1 183194977 183194987 Tcf12_MA0521.1 10.678188760369494 - +chr1 183471822 183471832 Tcf12_MA0521.1 8.940498004449536 - +chr1 183471823 183471833 Tcf12_MA0521.1 8.672986041625103 + +chr1 183481022 183481032 Tcf12_MA0521.1 8.036683808596004 - +chr1 183590622 183590632 Tcf12_MA0521.1 8.980057732786568 - +chr1 183604275 183604285 Tcf12_MA0521.1 10.377950981840186 + +chr1 183842149 183842159 Tcf12_MA0521.1 10.039691710898296 + +chr1 183911506 183911516 Tcf12_MA0521.1 10.132610007798622 + +chr1 183989271 183989281 Tcf12_MA0521.1 8.527355600105924 + +chr1 184037009 184037019 Tcf12_MA0521.1 10.132610007798622 - +chr1 184051652 184051662 Tcf12_MA0521.1 8.773495588931576 - +chr1 184754667 184754677 Tcf12_MA0521.1 9.366045376850817 - +chr1 184754668 184754678 Tcf12_MA0521.1 8.177761915464160 + +chr1 184755303 184755313 Tcf12_MA0521.1 9.372691190133441 - +chr1 184941531 184941541 Tcf12_MA0521.1 8.945884286469560 - 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193059307 Tcf12_MA0521.1 8.050642698641447 - +chr1 193059313 193059323 Tcf12_MA0521.1 9.503382056350400 - +chr1 193105271 193105281 Tcf12_MA0521.1 9.655897106334145 - +chr1 193105272 193105282 Tcf12_MA0521.1 8.291560120788663 + +chr1 193217141 193217151 Tcf12_MA0521.1 8.678372323645128 - +chr1 193537384 193537394 Tcf12_MA0521.1 9.743551159545936 - +chr1 193539904 193539914 Tcf12_MA0521.1 9.378816296660885 - +chr1 195697364 195697374 Tcf12_MA0521.1 9.221783658860630 + +chr1 197182520 197182530 Tcf12_MA0521.1 7.817445309657057 - +chr1 197201253 197201263 Tcf12_MA0521.1 8.285008872232149 + +chr1 197775900 197775910 Tcf12_MA0521.1 9.204795195105282 - +chr1 197775973 197775983 Tcf12_MA0521.1 7.911266146406390 - +chr1 197902503 197902513 Tcf12_MA0521.1 8.015322959099164 - +chr1 198176051 198176061 Tcf12_MA0521.1 7.839750376013002 + +chr1 198202465 198202475 Tcf12_MA0521.1 7.757848556573635 + +chr1 198599062 198599072 Tcf12_MA0521.1 7.674505639475321 - +chr1 198599063 198599073 Tcf12_MA0521.1 9.094613275885063 + +chr1 199041792 199041802 Tcf12_MA0521.1 8.728984833489813 - +chr1 199243431 199243441 Tcf12_MA0521.1 7.851618755974061 - +chr1 199243725 199243735 Tcf12_MA0521.1 9.655897106334145 + +chr1 199942283 199942293 Tcf12_MA0521.1 10.132610007798622 + +chr1 200153517 200153527 Tcf12_MA0521.1 9.481425478741528 - +chr1 200262738 200262748 Tcf12_MA0521.1 7.674505639475321 - +chr1 200262739 200262749 Tcf12_MA0521.1 8.570395372811033 + +chr1 200410542 200410552 Tcf12_MA0521.1 8.326884026826407 + +chr1 200415789 200415799 Tcf12_MA0521.1 10.039691710898296 + +chr1 200628649 200628659 Tcf12_MA0521.1 7.818338889167254 - +chr1 200739674 200739684 Tcf12_MA0521.1 8.902103395196407 + +chr1 200866699 200866709 Tcf12_MA0521.1 9.576548744027976 + +chr1 200888398 200888408 Tcf12_MA0521.1 8.201117875889716 - +chr1 201171186 201171196 Tcf12_MA0521.1 7.829364326967023 + +chr1 201468710 201468720 Tcf12_MA0521.1 9.576548744027976 + +chr1 201480531 201480541 Tcf12_MA0521.1 8.110987770676546 - 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205288483 Tcf12_MA0521.1 8.760819233847618 - +chr1 205749712 205749722 Tcf12_MA0521.1 8.099050240100008 + +chr1 206563227 206563237 Tcf12_MA0521.1 7.911076781452147 - +chr1 206612406 206612416 Tcf12_MA0521.1 9.875135605273094 - +chr1 206612407 206612417 Tcf12_MA0521.1 9.126456636581677 + +chr1 206679889 206679899 Tcf12_MA0521.1 10.273155344639992 - +chr1 206739682 206739692 Tcf12_MA0521.1 8.302883409986599 - +chr1 206739683 206739693 Tcf12_MA0521.1 8.466235505373783 + +chr1 206739947 206739957 Tcf12_MA0521.1 8.586183890913412 - +chr1 207454324 207454334 Tcf12_MA0521.1 8.127976234431895 - +chr1 207454325 207454335 Tcf12_MA0521.1 8.713303107736126 + +chr1 207620445 207620455 Tcf12_MA0521.1 8.413065329206818 + +chr1 207752068 207752078 Tcf12_MA0521.1 7.865852851115617 - +chr1 207868443 207868453 Tcf12_MA0521.1 8.389804509432343 + +chr1 207868479 207868489 Tcf12_MA0521.1 8.129602105496330 - +chr1 207868619 207868629 Tcf12_MA0521.1 7.769171845771572 - +chr1 207883338 207883348 Tcf12_MA0521.1 7.955130477903714 - +chr1 208244788 208244798 Tcf12_MA0521.1 7.851618755974061 - +chr1 208652429 208652439 Tcf12_MA0521.1 10.132610007798622 - +chr1 209086984 209086994 Tcf12_MA0521.1 9.340880141900158 + +chr1 209354511 209354521 Tcf12_MA0521.1 8.387076508021858 + +chr1 209827805 209827815 Tcf12_MA0521.1 8.808333195795981 - +chr1 210233211 210233221 Tcf12_MA0521.1 8.438230564157477 + +chr1 210343207 210343217 Tcf12_MA0521.1 8.093827673421572 + +chr1 210361355 210361365 Tcf12_MA0521.1 10.273894169147411 - +chr1 210400115 210400125 Tcf12_MA0521.1 9.853733078766155 - +chr1 211260830 211260840 Tcf12_MA0521.1 9.946651375666480 - +chr1 211327415 211327425 Tcf12_MA0521.1 9.968175940504910 - +chr1 211335839 211335849 Tcf12_MA0521.1 8.341663212731087 + +chr1 211336097 211336107 Tcf12_MA0521.1 9.290244279930951 + +chr1 211579125 211579135 Tcf12_MA0521.1 9.470841014051011 + +chr1 211675817 211675827 Tcf12_MA0521.1 9.092962358600873 + +chr1 211940014 211940024 Tcf12_MA0521.1 9.062896792377890 - +chr1 212559117 212559127 Tcf12_MA0521.1 8.269881197580396 + +chr1 212567214 212567224 Tcf12_MA0521.1 9.470841014051011 - +chr1 212567371 212567381 Tcf12_MA0521.1 8.897610822584078 - +chr1 212567385 212567395 Tcf12_MA0521.1 10.411445259820990 + +chr1 212665638 212665648 Tcf12_MA0521.1 7.985202577079878 - +chr1 212665639 212665649 Tcf12_MA0521.1 9.886458894471030 + +chr1 212857810 212857820 Tcf12_MA0521.1 7.942017602299753 - +chr1 212857811 212857821 Tcf12_MA0521.1 8.302883409986599 + +chr1 213015416 213015426 Tcf12_MA0521.1 7.919806571865969 - +chr1 216601205 216601215 Tcf12_MA0521.1 9.295466846609386 + +chr1 217482475 217482485 Tcf12_MA0521.1 7.862858604947828 + +chr1 217630913 217630923 Tcf12_MA0521.1 10.492393843578942 - +chr1 218164280 218164290 Tcf12_MA0521.1 8.002369234755962 + +chr1 218346251 218346261 Tcf12_MA0521.1 9.092962358600873 - +chr1 219465534 219465544 Tcf12_MA0521.1 10.061094237405236 - +chr1 219465535 219465545 Tcf12_MA0521.1 10.061094237405236 + 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222644347 Tcf12_MA0521.1 8.302883409986599 - diff --git a/demo/known_tfbs_chr1_hg38/Tcf21_MA0832.1.bed b/demo/known_tfbs_chr1_hg38/Tcf21_MA0832.1.bed new file mode 100644 index 0000000..3b6aa27 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/Tcf21_MA0832.1.bed @@ -0,0 +1,349 @@ +chr1 1630335 1630348 Tcf21_MA0832.1 7.722846509726698 + +chr1 1630335 1630348 Tcf21_MA0832.1 7.274511412691040 - +chr1 1678576 1678589 Tcf21_MA0832.1 4.622089308312352 + +chr1 2586495 2586508 Tcf21_MA0832.1 3.368187460648557 - +chr1 2642896 2642909 Tcf21_MA0832.1 3.769513808861341 - +chr1 2643099 2643112 Tcf21_MA0832.1 6.981412557060351 - +chr1 3677232 3677245 Tcf21_MA0832.1 3.293581498136356 - +chr1 6359985 6359998 Tcf21_MA0832.1 4.845813703066677 + +chr1 6359985 6359998 Tcf21_MA0832.1 4.837430752050111 - +chr1 6490296 6490309 Tcf21_MA0832.1 7.653036007327451 + +chr1 6490296 6490309 Tcf21_MA0832.1 5.813672284586527 - +chr1 8283442 8283455 Tcf21_MA0832.1 7.701556638860736 + +chr1 8283442 8283455 Tcf21_MA0832.1 7.345458300917243 - +chr1 8427546 8427559 Tcf21_MA0832.1 4.259103947984462 + +chr1 8427573 8427586 Tcf21_MA0832.1 6.967366330775073 + +chr1 8427729 8427742 Tcf21_MA0832.1 4.422690091676108 + +chr1 8764045 8764058 Tcf21_MA0832.1 4.363530135128563 + +chr1 10985762 10985775 Tcf21_MA0832.1 5.673241477911152 + +chr1 11909654 11909667 Tcf21_MA0832.1 3.917474415092705 + +chr1 12040657 12040670 Tcf21_MA0832.1 4.544332557805506 - +chr1 12078704 12078717 Tcf21_MA0832.1 4.426709833622400 - +chr1 12078773 12078786 Tcf21_MA0832.1 6.220313458580665 + +chr1 13749248 13749261 Tcf21_MA0832.1 10.414692398792869 + +chr1 13749248 13749261 Tcf21_MA0832.1 10.860530470646228 - +chr1 14599959 14599972 Tcf21_MA0832.1 3.434673198009813 + +chr1 15684459 15684472 Tcf21_MA0832.1 3.525034427028962 - +chr1 15835233 15835246 Tcf21_MA0832.1 3.404785391385957 + +chr1 15975700 15975713 Tcf21_MA0832.1 4.015972584700850 - +chr1 16352375 16352388 Tcf21_MA0832.1 4.239517250607153 + +chr1 16905302 16905315 Tcf21_MA0832.1 3.354937486905520 + +chr1 18956074 18956087 Tcf21_MA0832.1 3.310158544502853 + +chr1 19312695 19312708 Tcf21_MA0832.1 7.628291069559519 - +chr1 20081150 20081163 Tcf21_MA0832.1 3.362225860451397 + +chr1 21293756 21293769 Tcf21_MA0832.1 6.263055357554892 + +chr1 21866306 21866319 Tcf21_MA0832.1 5.987152479332995 - +chr1 22026120 22026133 Tcf21_MA0832.1 4.515648341164992 - +chr1 23743875 23743888 Tcf21_MA0832.1 7.833078029550193 + +chr1 23743875 23743888 Tcf21_MA0832.1 8.609964535850864 - +chr1 23980629 23980642 Tcf21_MA0832.1 4.422690091676108 - +chr1 24392511 24392524 Tcf21_MA0832.1 5.650189841364306 + +chr1 24392511 24392524 Tcf21_MA0832.1 4.868527096001844 - +chr1 24745172 24745185 Tcf21_MA0832.1 6.266304771421317 - +chr1 24848143 24848156 Tcf21_MA0832.1 4.265320883227460 + +chr1 25430790 25430803 Tcf21_MA0832.1 5.190675008812960 - +chr1 25676142 25676155 Tcf21_MA0832.1 6.443423146613631 + +chr1 26378501 26378514 Tcf21_MA0832.1 4.828706178489551 - +chr1 26473216 26473229 Tcf21_MA0832.1 7.441951412815328 - +chr1 27234650 27234663 Tcf21_MA0832.1 5.129356325084747 + +chr1 27234650 27234663 Tcf21_MA0832.1 3.632511129469621 - +chr1 27357654 27357667 Tcf21_MA0832.1 5.577179646822181 + +chr1 27726146 27726159 Tcf21_MA0832.1 3.884547844824519 - +chr1 28648700 28648713 Tcf21_MA0832.1 3.499202761987423 - +chr1 32627694 32627707 Tcf21_MA0832.1 9.773298321306275 + +chr1 32627694 32627707 Tcf21_MA0832.1 8.704041419029750 - +chr1 33099497 33099510 Tcf21_MA0832.1 6.454110365484924 - +chr1 34530199 34530212 Tcf21_MA0832.1 3.191685624777750 - +chr1 35193175 35193188 Tcf21_MA0832.1 4.203375920025834 + +chr1 35193175 35193188 Tcf21_MA0832.1 4.608132197717227 - +chr1 36023361 36023374 Tcf21_MA0832.1 6.632144690250669 + +chr1 36023549 36023562 Tcf21_MA0832.1 7.203055793972116 + +chr1 36023549 36023562 Tcf21_MA0832.1 5.694803168549374 - +chr1 38475584 38475597 Tcf21_MA0832.1 6.390346964557607 - +chr1 38816022 38816035 Tcf21_MA0832.1 6.849875412541149 - +chr1 39509626 39509639 Tcf21_MA0832.1 6.370348803344858 + +chr1 39883516 39883529 Tcf21_MA0832.1 7.049005508950254 - +chr1 39996130 39996143 Tcf21_MA0832.1 5.625792862020007 + +chr1 39996130 39996143 Tcf21_MA0832.1 4.600094339942594 - +chr1 40450691 40450704 Tcf21_MA0832.1 3.440462165319397 + +chr1 40628582 40628595 Tcf21_MA0832.1 4.492532814497280 - +chr1 40699980 40699993 Tcf21_MA0832.1 3.505146857447262 + +chr1 42463086 42463099 Tcf21_MA0832.1 7.328071566048647 + +chr1 42463086 42463099 Tcf21_MA0832.1 8.086898228719996 - +chr1 43853539 43853552 Tcf21_MA0832.1 5.358752243056221 + +chr1 45011301 45011314 Tcf21_MA0832.1 9.806389374759007 + +chr1 45011301 45011314 Tcf21_MA0832.1 9.022661303681922 - +chr1 45394312 45394325 Tcf21_MA0832.1 4.572667570216818 + +chr1 45491123 45491136 Tcf21_MA0832.1 4.224339674026224 - +chr1 45544211 45544224 Tcf21_MA0832.1 10.675709948660232 + +chr1 45544211 45544224 Tcf21_MA0832.1 10.836365056562249 - +chr1 45584316 45584329 Tcf21_MA0832.1 8.491219759036694 - +chr1 46063003 46063016 Tcf21_MA0832.1 3.305675263616773 + +chr1 46604505 46604518 Tcf21_MA0832.1 4.158076802331244 + +chr1 46668061 46668074 Tcf21_MA0832.1 3.749216930519938 - +chr1 47314706 47314719 Tcf21_MA0832.1 3.357701058339729 + +chr1 51236175 51236188 Tcf21_MA0832.1 9.159766546943517 + +chr1 52703355 52703368 Tcf21_MA0832.1 6.142348704180400 + +chr1 54376874 54376887 Tcf21_MA0832.1 3.985939373287377 + +chr1 55205183 55205196 Tcf21_MA0832.1 7.689100851287480 + +chr1 56296207 56296220 Tcf21_MA0832.1 4.221964316340078 - +chr1 56525945 56525958 Tcf21_MA0832.1 4.116056201187912 - +chr1 58968390 58968403 Tcf21_MA0832.1 4.165415914239617 + +chr1 58997201 58997214 Tcf21_MA0832.1 3.914027070584975 - +chr1 59020396 59020409 Tcf21_MA0832.1 5.848854002680529 - +chr1 59759589 59759602 Tcf21_MA0832.1 7.165067313649979 - +chr1 61050112 61050125 Tcf21_MA0832.1 3.798770347376829 + +chr1 62613401 62613414 Tcf21_MA0832.1 4.426709833622400 - +chr1 62784507 62784520 Tcf21_MA0832.1 6.565162601467089 - 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4.474210173060885 - +chr1 78854925 78854938 Tcf21_MA0832.1 5.407564360520754 - +chr1 79260333 79260346 Tcf21_MA0832.1 4.280276498411443 - +chr1 79519600 79519613 Tcf21_MA0832.1 3.939853213782537 + +chr1 80218049 80218062 Tcf21_MA0832.1 9.731587496587597 - +chr1 81598049 81598062 Tcf21_MA0832.1 5.421409916502713 - +chr1 82153225 82153238 Tcf21_MA0832.1 7.996918135958047 - +chr1 83485867 83485880 Tcf21_MA0832.1 7.623172031244497 - +chr1 83487600 83487613 Tcf21_MA0832.1 5.410700058854315 + +chr1 83487600 83487613 Tcf21_MA0832.1 6.995168467826577 - +chr1 83860562 83860575 Tcf21_MA0832.1 4.636809690678398 - +chr1 83999128 83999141 Tcf21_MA0832.1 11.926651688737827 + +chr1 83999128 83999141 Tcf21_MA0832.1 11.913030438125144 - +chr1 84078511 84078524 Tcf21_MA0832.1 3.935723263573045 + +chr1 84599644 84599657 Tcf21_MA0832.1 5.648328998195337 + +chr1 84690746 84690759 Tcf21_MA0832.1 3.910041326156628 - +chr1 84854281 84854294 Tcf21_MA0832.1 3.314058356068070 - +chr1 84944850 84944863 Tcf21_MA0832.1 6.176476461799681 - +chr1 85048212 85048225 Tcf21_MA0832.1 5.255297274403643 + +chr1 85200673 85200686 Tcf21_MA0832.1 5.378852546888949 + +chr1 85200673 85200686 Tcf21_MA0832.1 5.997580970469900 - +chr1 85298498 85298511 Tcf21_MA0832.1 5.627195188074120 - +chr1 86016261 86016274 Tcf21_MA0832.1 5.207774337724782 - +chr1 87046173 87046186 Tcf21_MA0832.1 8.404757393162317 - +chr1 88180699 88180712 Tcf21_MA0832.1 3.783513710802543 - +chr1 88892051 88892064 Tcf21_MA0832.1 4.691945089675004 + +chr1 89694119 89694132 Tcf21_MA0832.1 3.878834567390061 + +chr1 89781629 89781642 Tcf21_MA0832.1 3.462116082041442 - +chr1 89843097 89843110 Tcf21_MA0832.1 4.665605479162682 + +chr1 89844108 89844121 Tcf21_MA0832.1 3.866546289584553 + +chr1 91501647 91501660 Tcf21_MA0832.1 3.387083713425739 + +chr1 92485744 92485757 Tcf21_MA0832.1 7.179427114727794 - +chr1 92785060 92785073 Tcf21_MA0832.1 4.056373117711949 + +chr1 92785060 92785073 Tcf21_MA0832.1 5.420027816018237 - +chr1 92962470 92962483 Tcf21_MA0832.1 13.189566369297600 + +chr1 92962470 92962483 Tcf21_MA0832.1 12.701752743280274 - +chr1 93346491 93346504 Tcf21_MA0832.1 4.158636228403346 + +chr1 93693317 93693330 Tcf21_MA0832.1 3.312759999914339 - +chr1 93704376 93704389 Tcf21_MA0832.1 8.185537388222741 - +chr1 93847564 93847577 Tcf21_MA0832.1 3.597420031750925 + +chr1 93878682 93878695 Tcf21_MA0832.1 3.989469569385716 + +chr1 93909871 93909884 Tcf21_MA0832.1 7.685310448911891 - +chr1 94411480 94411493 Tcf21_MA0832.1 8.882488960070361 - +chr1 94962745 94962758 Tcf21_MA0832.1 3.762667411049202 - +chr1 96955347 96955360 Tcf21_MA0832.1 5.818403339072965 - +chr1 97848557 97848570 Tcf21_MA0832.1 5.586019772841142 - +chr1 97864584 97864597 Tcf21_MA0832.1 6.111249467831726 - +chr1 99685706 99685719 Tcf21_MA0832.1 6.283870098960057 + +chr1 99685725 99685738 Tcf21_MA0832.1 6.916024344606161 + +chr1 99758406 99758419 Tcf21_MA0832.1 5.306587327862936 + +chr1 99758406 99758419 Tcf21_MA0832.1 5.005286088116613 - +chr1 99786880 99786893 Tcf21_MA0832.1 3.582949037738329 - +chr1 100523395 100523408 Tcf21_MA0832.1 8.444923616758979 + +chr1 101235563 101235576 Tcf21_MA0832.1 7.011418563088288 - +chr1 101410833 101410846 Tcf21_MA0832.1 3.130059613967541 + +chr1 103327142 103327155 Tcf21_MA0832.1 7.608201115885190 + +chr1 103327142 103327155 Tcf21_MA0832.1 7.647069089242084 - +chr1 107056844 107056857 Tcf21_MA0832.1 6.382842168127105 + +chr1 107056844 107056857 Tcf21_MA0832.1 6.414803183633165 - +chr1 107529772 107529785 Tcf21_MA0832.1 4.501816528681806 + +chr1 107777531 107777544 Tcf21_MA0832.1 6.661778940559630 + +chr1 107777531 107777544 Tcf21_MA0832.1 5.744089586121263 - +chr1 107777651 107777664 Tcf21_MA0832.1 5.645211918003127 - +chr1 107935162 107935175 Tcf21_MA0832.1 6.018975780389281 + +chr1 107935162 107935175 Tcf21_MA0832.1 6.007547127505786 - +chr1 107964728 107964741 Tcf21_MA0832.1 3.333358216366382 - +chr1 108661408 108661421 Tcf21_MA0832.1 8.863332182024635 - +chr1 109214091 109214104 Tcf21_MA0832.1 8.420096880289890 + +chr1 109214091 109214104 Tcf21_MA0832.1 7.488597124284129 - +chr1 110384881 110384894 Tcf21_MA0832.1 5.623934087076814 - +chr1 110787359 110787372 Tcf21_MA0832.1 4.222359312790479 - +chr1 112957434 112957447 Tcf21_MA0832.1 9.352480318716950 + +chr1 113191971 113191984 Tcf21_MA0832.1 6.783144518558437 - +chr1 115099129 115099142 Tcf21_MA0832.1 4.045810860710361 - +chr1 115099445 115099458 Tcf21_MA0832.1 5.763202801182214 - +chr1 116110894 116110907 Tcf21_MA0832.1 3.428064520791096 + +chr1 116288442 116288455 Tcf21_MA0832.1 9.311568770971025 + +chr1 116288442 116288455 Tcf21_MA0832.1 9.766683553842951 - +chr1 116373299 116373312 Tcf21_MA0832.1 6.126675596405836 - +chr1 116504228 116504241 Tcf21_MA0832.1 3.655985073064807 + +chr1 119675734 119675747 Tcf21_MA0832.1 3.286107327356462 + +chr1 120415050 120415063 Tcf21_MA0832.1 3.718116482277833 + +chr1 120415050 120415063 Tcf21_MA0832.1 3.718116482277832 - +chr1 120942274 120942287 Tcf21_MA0832.1 8.294430084814049 + +chr1 120942274 120942287 Tcf21_MA0832.1 7.970161336203009 - +chr1 121516707 121516720 Tcf21_MA0832.1 4.437166997357838 - +chr1 144103711 144103724 Tcf21_MA0832.1 3.177386937474098 - +chr1 144461623 144461636 Tcf21_MA0832.1 4.716644748479530 + +chr1 144461623 144461636 Tcf21_MA0832.1 5.155703134496616 - +chr1 144524334 144524347 Tcf21_MA0832.1 5.298721560948344 - +chr1 144546109 144546122 Tcf21_MA0832.1 5.602113170577452 + +chr1 144552361 144552374 Tcf21_MA0832.1 4.425388420725852 + +chr1 144552361 144552374 Tcf21_MA0832.1 4.579201963851456 - +chr1 145885848 145885861 Tcf21_MA0832.1 9.205708547853412 + +chr1 145885848 145885861 Tcf21_MA0832.1 7.809903683086353 - +chr1 146035970 146035983 Tcf21_MA0832.1 9.620328600907021 + +chr1 146035970 146035983 Tcf21_MA0832.1 11.310465868629421 - +chr1 146037264 146037277 Tcf21_MA0832.1 3.471298141031918 + +chr1 146038009 146038022 Tcf21_MA0832.1 3.528257675021769 + +chr1 146038009 146038022 Tcf21_MA0832.1 4.302992239457514 - 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150876904 Tcf21_MA0832.1 3.458942121945193 + +chr1 150876891 150876904 Tcf21_MA0832.1 5.392631882772337 - +chr1 151059507 151059520 Tcf21_MA0832.1 8.716102742583429 + +chr1 151059507 151059520 Tcf21_MA0832.1 7.785340814217010 - +chr1 151790713 151790726 Tcf21_MA0832.1 5.623742528451906 - +chr1 152459906 152459919 Tcf21_MA0832.1 4.384052448939568 - +chr1 153599021 153599034 Tcf21_MA0832.1 5.847195604558963 + +chr1 153599021 153599034 Tcf21_MA0832.1 6.667660930203898 - +chr1 153599161 153599174 Tcf21_MA0832.1 6.266799802357270 - +chr1 154791387 154791400 Tcf21_MA0832.1 6.352473133385441 - +chr1 154870334 154870347 Tcf21_MA0832.1 6.204858943446016 - +chr1 155563254 155563267 Tcf21_MA0832.1 3.121125779977209 + +chr1 156226414 156226427 Tcf21_MA0832.1 8.218422479812769 + +chr1 156226414 156226427 Tcf21_MA0832.1 8.381356801594277 - +chr1 156338701 156338714 Tcf21_MA0832.1 3.262765204939294 + +chr1 156505429 156505442 Tcf21_MA0832.1 5.502959605835602 + +chr1 157653079 157653092 Tcf21_MA0832.1 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169486214 Tcf21_MA0832.1 4.240453672730075 - +chr1 169909069 169909082 Tcf21_MA0832.1 5.614471729102470 - +chr1 170126940 170126953 Tcf21_MA0832.1 7.858024229986666 + +chr1 170882103 170882116 Tcf21_MA0832.1 4.767527412798000 - +chr1 170932241 170932254 Tcf21_MA0832.1 6.301389253092720 - +chr1 171251599 171251612 Tcf21_MA0832.1 4.272023202989065 - +chr1 171251632 171251645 Tcf21_MA0832.1 6.671769744112849 - +chr1 171314114 171314127 Tcf21_MA0832.1 9.440647467015550 + +chr1 171314114 171314127 Tcf21_MA0832.1 9.596674830946222 - +chr1 171742007 171742020 Tcf21_MA0832.1 4.910897639068826 + +chr1 171841626 171841639 Tcf21_MA0832.1 7.238103705055417 + +chr1 171841626 171841639 Tcf21_MA0832.1 6.782988922183488 - +chr1 172343406 172343419 Tcf21_MA0832.1 4.590119650695229 + +chr1 172343406 172343419 Tcf21_MA0832.1 5.686836312590306 - +chr1 175029742 175029755 Tcf21_MA0832.1 3.545992494835552 + +chr1 176193435 176193448 Tcf21_MA0832.1 3.635273654741972 + +chr1 176207197 176207210 Tcf21_MA0832.1 3.400191810378530 + +chr1 178606165 178606178 Tcf21_MA0832.1 4.255821155658651 + +chr1 178973383 178973396 Tcf21_MA0832.1 4.257122603402200 + +chr1 178973475 178973488 Tcf21_MA0832.1 3.607898061153310 + +chr1 179954391 179954404 Tcf21_MA0832.1 5.177641352536755 + +chr1 180631833 180631846 Tcf21_MA0832.1 5.521852942383090 - +chr1 181514641 181514654 Tcf21_MA0832.1 3.236015556640870 + +chr1 182390751 182390764 Tcf21_MA0832.1 3.310158544502851 - +chr1 182616184 182616197 Tcf21_MA0832.1 4.057101673632012 + +chr1 182789644 182789657 Tcf21_MA0832.1 3.424084146048685 - +chr1 183024057 183024070 Tcf21_MA0832.1 4.341860953394131 - +chr1 183071352 183071365 Tcf21_MA0832.1 6.392309497707609 + +chr1 183071352 183071365 Tcf21_MA0832.1 5.477476694181465 - +chr1 183194976 183194989 Tcf21_MA0832.1 8.498061177709420 - +chr1 183195329 183195342 Tcf21_MA0832.1 5.600352986665132 + +chr1 183480866 183480879 Tcf21_MA0832.1 3.739594393321888 + +chr1 183481021 183481034 Tcf21_MA0832.1 3.709109790692935 - 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193059325 Tcf21_MA0832.1 6.651637784144396 + +chr1 193271114 193271127 Tcf21_MA0832.1 5.174760588659185 + +chr1 193537383 193537396 Tcf21_MA0832.1 5.830834332095966 - +chr1 194295852 194295865 Tcf21_MA0832.1 4.081358884067851 - +chr1 195195413 195195426 Tcf21_MA0832.1 3.360837208162538 + diff --git a/demo/known_tfbs_chr1_hg38/Tcf7_MA0769.1.bed b/demo/known_tfbs_chr1_hg38/Tcf7_MA0769.1.bed new file mode 100644 index 0000000..c55fe47 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/Tcf7_MA0769.1.bed @@ -0,0 +1,354 @@ +chr1 1505047 1505058 Tcf7_MA0769.1 7.883416687340566 + +chr1 3656761 3656772 Tcf7_MA0769.1 5.740607766414374 + +chr1 3665604 3665615 Tcf7_MA0769.1 5.530733678796252 - +chr1 3666651 3666662 Tcf7_MA0769.1 5.785583601201789 - +chr1 4267532 4267543 Tcf7_MA0769.1 11.910176554554372 - +chr1 4267626 4267637 Tcf7_MA0769.1 7.003414284528710 + +chr1 6026230 6026241 Tcf7_MA0769.1 7.494008076960402 + +chr1 6490827 6490838 Tcf7_MA0769.1 9.806083576744971 + +chr1 7994130 7994141 Tcf7_MA0769.1 5.960511055445929 - +chr1 8397748 8397759 Tcf7_MA0769.1 7.003414284528711 - +chr1 8427608 8427619 Tcf7_MA0769.1 5.550269710479729 + +chr1 8764709 8764720 Tcf7_MA0769.1 14.800227140156681 + +chr1 8764726 8764737 Tcf7_MA0769.1 5.920416449469748 + +chr1 8817850 8817861 Tcf7_MA0769.1 6.294881484272104 - +chr1 9163898 9163909 Tcf7_MA0769.1 8.394388058737562 + +chr1 9164030 9164041 Tcf7_MA0769.1 5.589792382356102 - +chr1 9629516 9629527 Tcf7_MA0769.1 6.671497922764348 + +chr1 9910606 9910617 Tcf7_MA0769.1 7.494008076960402 + +chr1 10495215 10495226 Tcf7_MA0769.1 5.943396513294203 - +chr1 10495237 10495248 Tcf7_MA0769.1 6.062092298854941 - +chr1 10940181 10940192 Tcf7_MA0769.1 7.832534641746103 + +chr1 10965074 10965085 Tcf7_MA0769.1 6.140755808092786 + +chr1 12040700 12040711 Tcf7_MA0769.1 5.578398353349557 - +chr1 12620170 12620181 Tcf7_MA0769.1 5.738732920637702 + +chr1 13700710 13700721 Tcf7_MA0769.1 5.629438177355316 - +chr1 13730653 13730664 Tcf7_MA0769.1 5.729875366612539 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33461414 33461425 Tcf7_MA0769.1 6.818888326677856 + +chr1 35193264 35193275 Tcf7_MA0769.1 6.927077979886960 - +chr1 37595877 37595888 Tcf7_MA0769.1 6.472098944464011 - +chr1 37931554 37931565 Tcf7_MA0769.1 6.254463196254220 - +chr1 38475073 38475084 Tcf7_MA0769.1 8.226708778280065 - +chr1 39576236 39576247 Tcf7_MA0769.1 7.884831002192556 + +chr1 39576710 39576721 Tcf7_MA0769.1 6.294881484272104 - +chr1 39901657 39901668 Tcf7_MA0769.1 6.498710478572911 + +chr1 40161607 40161618 Tcf7_MA0769.1 6.863553113204937 - +chr1 40450626 40450637 Tcf7_MA0769.1 6.581024611911462 - +chr1 41623319 41623330 Tcf7_MA0769.1 5.531082369138119 + +chr1 42658487 42658498 Tcf7_MA0769.1 9.044334686334913 - +chr1 43172639 43172650 Tcf7_MA0769.1 5.856256992443082 + +chr1 45304148 45304159 Tcf7_MA0769.1 9.589752269052680 - +chr1 45544146 45544157 Tcf7_MA0769.1 8.048533050195655 - +chr1 51268451 51268462 Tcf7_MA0769.1 8.596333756880085 - +chr1 52033505 52033516 Tcf7_MA0769.1 9.755220918974358 - +chr1 52056703 52056714 Tcf7_MA0769.1 7.402256427108161 - +chr1 52403896 52403907 Tcf7_MA0769.1 5.524567103880448 + +chr1 52637411 52637422 Tcf7_MA0769.1 5.530733678796253 + +chr1 53838318 53838329 Tcf7_MA0769.1 6.917501301877733 + +chr1 54376730 54376741 Tcf7_MA0769.1 5.496514400722286 + +chr1 56135402 56135413 Tcf7_MA0769.1 6.344201522360060 - +chr1 56296590 56296601 Tcf7_MA0769.1 6.676090200967299 - +chr1 56565397 56565408 Tcf7_MA0769.1 7.548786083240220 + +chr1 56821194 56821205 Tcf7_MA0769.1 5.668794080205443 - +chr1 58584377 58584388 Tcf7_MA0769.1 5.476772009742978 - +chr1 58700184 58700195 Tcf7_MA0769.1 5.598360691052906 + +chr1 59020631 59020642 Tcf7_MA0769.1 6.124371409449378 - +chr1 59046416 59046427 Tcf7_MA0769.1 8.615521098221697 + +chr1 59046690 59046701 Tcf7_MA0769.1 7.014268253313850 - +chr1 59697301 59697312 Tcf7_MA0769.1 5.803015712598463 - +chr1 59947580 59947591 Tcf7_MA0769.1 5.493537948521688 - +chr1 60391442 60391453 Tcf7_MA0769.1 5.901229108128137 + +chr1 60978655 60978666 Tcf7_MA0769.1 7.341650177088179 - +chr1 62160312 62160323 Tcf7_MA0769.1 8.553874903532707 + +chr1 62801071 62801082 Tcf7_MA0769.1 6.855669250963837 - +chr1 63368066 63368077 Tcf7_MA0769.1 5.504529162605145 + +chr1 64224009 64224020 Tcf7_MA0769.1 5.766566547871916 + +chr1 64895599 64895610 Tcf7_MA0769.1 8.206259823993276 - +chr1 64898771 64898782 Tcf7_MA0769.1 6.010608263758723 - +chr1 64956653 64956664 Tcf7_MA0769.1 5.618074608756030 - +chr1 64957184 64957195 Tcf7_MA0769.1 5.987699587356053 + +chr1 64987710 64987721 Tcf7_MA0769.1 7.481926432301368 - +chr1 65068210 65068221 Tcf7_MA0769.1 6.122615800470664 + +chr1 66247459 66247470 Tcf7_MA0769.1 7.062359233887027 - +chr1 66335763 66335774 Tcf7_MA0769.1 6.158218876010673 + +chr1 66397327 66397338 Tcf7_MA0769.1 5.473933405837979 + +chr1 67340082 67340093 Tcf7_MA0769.1 6.730519694807968 - +chr1 68495905 68495916 Tcf7_MA0769.1 5.579500798588981 - +chr1 69321150 69321161 Tcf7_MA0769.1 8.958006619794521 + +chr1 69321242 69321253 Tcf7_MA0769.1 6.405912712530293 - +chr1 69382721 69382732 Tcf7_MA0769.1 7.808971809778581 + +chr1 69737847 69737858 Tcf7_MA0769.1 6.242052112482221 + +chr1 70517846 70517857 Tcf7_MA0769.1 6.284636032226374 + +chr1 70518041 70518052 Tcf7_MA0769.1 7.197156658041695 + +chr1 72623636 72623647 Tcf7_MA0769.1 8.552978514475422 - +chr1 74197901 74197912 Tcf7_MA0769.1 8.834131367449496 - +chr1 74198692 74198703 Tcf7_MA0769.1 6.517682491466620 - +chr1 74681807 74681818 Tcf7_MA0769.1 10.744200568544803 - +chr1 74714505 74714516 Tcf7_MA0769.1 6.344201522360061 + +chr1 75339149 75339160 Tcf7_MA0769.1 6.294673578131272 - +chr1 75784688 75784699 Tcf7_MA0769.1 6.141803141812274 + +chr1 75909415 75909426 Tcf7_MA0769.1 7.681470989198041 + +chr1 75937354 75937365 Tcf7_MA0769.1 7.693892756380644 + +chr1 75937675 75937686 Tcf7_MA0769.1 6.666546109085181 + +chr1 75985994 75986005 Tcf7_MA0769.1 6.191313253208958 - +chr1 76074358 76074369 Tcf7_MA0769.1 9.021594279687136 - +chr1 76191235 76191246 Tcf7_MA0769.1 7.019382291906797 - +chr1 77219068 77219079 Tcf7_MA0769.1 5.668794080205443 + +chr1 77414118 77414129 Tcf7_MA0769.1 6.173162451588482 - +chr1 77672428 77672439 Tcf7_MA0769.1 9.471472360468473 + +chr1 78004572 78004583 Tcf7_MA0769.1 7.673213368455146 - +chr1 78377609 78377620 Tcf7_MA0769.1 7.317940490965919 - +chr1 78649792 78649803 Tcf7_MA0769.1 5.866915754431829 - +chr1 79468503 79468514 Tcf7_MA0769.1 8.094415026140897 + +chr1 79668045 79668056 Tcf7_MA0769.1 6.790356176349665 + +chr1 79694368 79694379 Tcf7_MA0769.1 11.375946217802962 + +chr1 79694797 79694808 Tcf7_MA0769.1 5.661104998113865 + +chr1 79741997 79742008 Tcf7_MA0769.1 5.866163819595164 - +chr1 79742314 79742325 Tcf7_MA0769.1 8.868267100340431 - +chr1 80639596 80639607 Tcf7_MA0769.1 7.582489161478838 - +chr1 80639928 80639939 Tcf7_MA0769.1 6.675334835186062 + +chr1 80640376 80640387 Tcf7_MA0769.1 6.864938741921536 + +chr1 80656355 80656366 Tcf7_MA0769.1 5.777225309860663 + +chr1 81548641 81548652 Tcf7_MA0769.1 6.093332949084282 - +chr1 81598905 81598916 Tcf7_MA0769.1 8.375200717395950 - +chr1 82152825 82152836 Tcf7_MA0769.1 6.595540348808470 - +chr1 82152834 82152845 Tcf7_MA0769.1 10.378944446067043 - +chr1 82153215 82153226 Tcf7_MA0769.1 5.500907697117404 + +chr1 83406082 83406093 Tcf7_MA0769.1 6.349230037582966 - +chr1 83500442 83500453 Tcf7_MA0769.1 5.645684310308280 - +chr1 83500835 83500846 Tcf7_MA0769.1 6.144579832008925 - +chr1 83501308 83501319 Tcf7_MA0769.1 8.134861116736047 - +chr1 83501382 83501393 Tcf7_MA0769.1 7.884831002192556 - +chr1 83508505 83508516 Tcf7_MA0769.1 5.866964829314755 + +chr1 84298625 84298636 Tcf7_MA0769.1 5.566336918911966 + +chr1 84389348 84389359 Tcf7_MA0769.1 5.829533732204892 - +chr1 84945260 84945271 Tcf7_MA0769.1 9.608724281946389 - +chr1 85308565 85308576 Tcf7_MA0769.1 7.118492506755196 - +chr1 87045991 87046002 Tcf7_MA0769.1 13.248853197062679 + +chr1 87449797 87449808 Tcf7_MA0769.1 7.082073151590150 - +chr1 88701532 88701543 Tcf7_MA0769.1 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103783923 Tcf7_MA0769.1 8.157564969186161 + +chr1 103784244 103784255 Tcf7_MA0769.1 8.284904427323193 + +chr1 103958705 103958716 Tcf7_MA0769.1 6.243986892026287 - +chr1 104746721 104746732 Tcf7_MA0769.1 6.284657989926446 + +chr1 104760194 104760205 Tcf7_MA0769.1 9.634082873526662 + +chr1 105028174 105028185 Tcf7_MA0769.1 9.811960172668439 + +chr1 107010961 107010972 Tcf7_MA0769.1 5.579866015062080 - +chr1 107016134 107016145 Tcf7_MA0769.1 6.499531689846143 + +chr1 107057813 107057824 Tcf7_MA0769.1 6.827324065576295 + +chr1 107451774 107451785 Tcf7_MA0769.1 6.112219805249424 + +chr1 107777946 107777957 Tcf7_MA0769.1 7.962557270721848 - +chr1 107934653 107934664 Tcf7_MA0769.1 7.284567137502784 + +chr1 107935841 107935852 Tcf7_MA0769.1 6.603976087706907 + +chr1 107935927 107935938 Tcf7_MA0769.1 10.783171541666555 + +chr1 108559664 108559675 Tcf7_MA0769.1 6.124371409449378 - +chr1 109100366 109100377 Tcf7_MA0769.1 11.158288511893099 - +chr1 109425709 109425720 Tcf7_MA0769.1 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115649095 Tcf7_MA0769.1 8.529193031681304 + +chr1 116597062 116597073 Tcf7_MA0769.1 7.321184565811379 + +chr1 116597504 116597515 Tcf7_MA0769.1 9.381336871407932 - +chr1 118960083 118960094 Tcf7_MA0769.1 5.494633204411572 + +chr1 119267198 119267209 Tcf7_MA0769.1 6.490478523090698 - +chr1 119323934 119323945 Tcf7_MA0769.1 8.011208827882859 - +chr1 119565047 119565058 Tcf7_MA0769.1 6.348221994671166 + +chr1 119565346 119565357 Tcf7_MA0769.1 6.092935786129579 - +chr1 119675623 119675634 Tcf7_MA0769.1 6.472098944464013 + +chr1 121097792 121097803 Tcf7_MA0769.1 6.188639594256414 + +chr1 144551552 144551563 Tcf7_MA0769.1 6.605611104425169 + +chr1 149812336 149812347 Tcf7_MA0769.1 5.715766243895708 + +chr1 150363853 150363864 Tcf7_MA0769.1 6.420682122866716 + +chr1 151458232 151458243 Tcf7_MA0769.1 6.170843726967944 + +chr1 152047990 152048001 Tcf7_MA0769.1 6.249555211092580 + +chr1 152189751 152189762 Tcf7_MA0769.1 6.331388841250253 + +chr1 153727825 153727836 Tcf7_MA0769.1 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159121838 Tcf7_MA0769.1 6.059058334835206 - +chr1 159122060 159122071 Tcf7_MA0769.1 7.046007147505574 + +chr1 159925373 159925384 Tcf7_MA0769.1 8.198576360782800 + +chr1 161045790 161045801 Tcf7_MA0769.1 6.277323786230386 + +chr1 161098155 161098166 Tcf7_MA0769.1 6.452791101814630 + +chr1 161530585 161530596 Tcf7_MA0769.1 5.987699587356053 - +chr1 161612190 161612201 Tcf7_MA0769.1 5.987699587356053 - +chr1 161707112 161707123 Tcf7_MA0769.1 6.404150456550305 + +chr1 162630997 162631008 Tcf7_MA0769.1 7.548786083240219 - +chr1 162951835 162951846 Tcf7_MA0769.1 5.797158504498842 + +chr1 164558871 164558882 Tcf7_MA0769.1 5.500907697117404 - +chr1 165857230 165857241 Tcf7_MA0769.1 7.046007147505574 - +chr1 166840108 166840119 Tcf7_MA0769.1 6.554843751441079 - +chr1 167044110 167044121 Tcf7_MA0769.1 5.530424311980068 + +chr1 167455788 167455799 Tcf7_MA0769.1 8.311209194235849 + +chr1 167500353 167500364 Tcf7_MA0769.1 5.993953958410375 - +chr1 167540184 167540195 Tcf7_MA0769.1 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173213108 Tcf7_MA0769.1 11.158288511893099 - +chr1 173298090 173298101 Tcf7_MA0769.1 6.294881484272104 + +chr1 174815402 174815413 Tcf7_MA0769.1 7.844445714218815 + +chr1 174875210 174875221 Tcf7_MA0769.1 6.423195385204393 - +chr1 174999770 174999781 Tcf7_MA0769.1 6.059455497789910 + +chr1 175209557 175209568 Tcf7_MA0769.1 5.987699587356053 + +chr1 175209819 175209830 Tcf7_MA0769.1 11.375946217802962 - +chr1 175307501 175307512 Tcf7_MA0769.1 7.644309729223582 - +chr1 175600771 175600782 Tcf7_MA0769.1 6.415629841840172 - +chr1 175601312 175601323 Tcf7_MA0769.1 5.737836565844200 - +chr1 176897835 176897846 Tcf7_MA0769.1 6.664179128494587 + +chr1 178067174 178067185 Tcf7_MA0769.1 6.424299044152315 + +chr1 178093403 178093414 Tcf7_MA0769.1 6.442250405188008 - +chr1 178608474 178608485 Tcf7_MA0769.1 7.902604028682178 + +chr1 178660259 178660270 Tcf7_MA0769.1 8.838670795758082 - +chr1 178973650 178973661 Tcf7_MA0769.1 8.106217694535081 - +chr1 179002844 179002855 Tcf7_MA0769.1 6.673428124985449 + +chr1 179002898 179002909 Tcf7_MA0769.1 5.618074608756030 + +chr1 179129702 179129713 Tcf7_MA0769.1 10.783171541666555 - +chr1 179815197 179815208 Tcf7_MA0769.1 5.618074608756030 + +chr1 180155162 180155173 Tcf7_MA0769.1 6.537471643863062 + +chr1 181105041 181105052 Tcf7_MA0769.1 5.851106693171640 - +chr1 181129115 181129126 Tcf7_MA0769.1 7.118959515048530 + +chr1 181482977 181482988 Tcf7_MA0769.1 5.866964829314754 - +chr1 181937001 181937012 Tcf7_MA0769.1 5.848920201030330 - +chr1 181937369 181937380 Tcf7_MA0769.1 6.656505272303614 + +chr1 182391410 182391421 Tcf7_MA0769.1 8.543883141634064 + +chr1 182677360 182677371 Tcf7_MA0769.1 5.645684310308280 - +chr1 182677799 182677810 Tcf7_MA0769.1 5.605555247249646 - +chr1 182677856 182677867 Tcf7_MA0769.1 7.851721983087713 + +chr1 183652458 183652469 Tcf7_MA0769.1 6.854009021322820 - +chr1 183652506 183652517 Tcf7_MA0769.1 8.679078563857153 - +chr1 183841998 183842009 Tcf7_MA0769.1 6.144579832008926 + +chr1 183842439 183842450 Tcf7_MA0769.1 8.155350030800911 - +chr1 184492020 184492031 Tcf7_MA0769.1 5.571718962686852 - +chr1 184492093 184492104 Tcf7_MA0769.1 6.101063271976694 + +chr1 184866927 184866938 Tcf7_MA0769.1 7.482602571520920 - +chr1 185439753 185439764 Tcf7_MA0769.1 7.945146711915489 + +chr1 185526718 185526729 Tcf7_MA0769.1 6.351230085588175 - +chr1 185560106 185560117 Tcf7_MA0769.1 7.118959515048530 - +chr1 185636937 185636948 Tcf7_MA0769.1 5.866163819595164 - +chr1 185637075 185637086 Tcf7_MA0769.1 5.524479307741929 + +chr1 186178810 186178821 Tcf7_MA0769.1 6.292077872599463 + +chr1 186482710 186482721 Tcf7_MA0769.1 6.575051434743608 - +chr1 186512684 186512695 Tcf7_MA0769.1 5.669556459633246 - +chr1 186519048 186519059 Tcf7_MA0769.1 7.427978243628572 - +chr1 186559898 186559909 Tcf7_MA0769.1 10.181585151268461 - +chr1 186559918 186559929 Tcf7_MA0769.1 5.917617653768624 + +chr1 186680324 186680335 Tcf7_MA0769.1 6.829327149471417 - +chr1 187072692 187072703 Tcf7_MA0769.1 5.630948309130027 - +chr1 187986010 187986021 Tcf7_MA0769.1 6.603976087706907 + +chr1 188130477 188130488 Tcf7_MA0769.1 7.633208632928252 + +chr1 188130530 188130541 Tcf7_MA0769.1 6.424299044152315 + +chr1 190759873 190759884 Tcf7_MA0769.1 11.289618151262570 + +chr1 192446236 192446247 Tcf7_MA0769.1 5.579866015062080 + +chr1 192517178 192517189 Tcf7_MA0769.1 7.981744612063459 + +chr1 192545321 192545332 Tcf7_MA0769.1 11.709185349676911 - +chr1 192559291 192559302 Tcf7_MA0769.1 11.832284226912419 - +chr1 192609829 192609840 Tcf7_MA0769.1 7.753492614042691 - diff --git a/demo/known_tfbs_chr1_hg38/Tcfl5_MA0632.1.bed b/demo/known_tfbs_chr1_hg38/Tcfl5_MA0632.1.bed new file mode 100644 index 0000000..374bf60 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/Tcfl5_MA0632.1.bed @@ -0,0 +1,584 @@ +chr1 1308048 1308057 Tcfl5_MA0632.1 6.419046714166879 + +chr1 1308048 1308057 Tcfl5_MA0632.1 6.419046714166879 - +chr1 1399387 1399396 Tcfl5_MA0632.1 6.730928765689734 + +chr1 1399387 1399396 Tcfl5_MA0632.1 6.730928765689734 - +chr1 1630560 1630569 Tcfl5_MA0632.1 6.421364011439080 + +chr1 1630560 1630569 Tcfl5_MA0632.1 6.421364011439080 - +chr1 1658980 1658989 Tcfl5_MA0632.1 6.835940476114793 + +chr1 1658980 1658989 Tcfl5_MA0632.1 6.835940476114793 - +chr1 1891165 1891174 Tcfl5_MA0632.1 6.628158408973621 + +chr1 1891165 1891174 Tcfl5_MA0632.1 6.628158408973621 - +chr1 2205471 2205480 Tcfl5_MA0632.1 6.835940476114793 + +chr1 2205471 2205480 Tcfl5_MA0632.1 6.835940476114793 - +chr1 2412782 2412791 Tcfl5_MA0632.1 6.520829401276361 + +chr1 2412782 2412791 Tcfl5_MA0632.1 6.520829401276361 - +chr1 2586913 2586922 Tcfl5_MA0632.1 6.628158408973621 + +chr1 2586913 2586922 Tcfl5_MA0632.1 6.628158408973621 - +chr1 2653458 2653467 Tcfl5_MA0632.1 6.523146698548563 + +chr1 2653458 2653467 Tcfl5_MA0632.1 6.523146698548563 - +chr1 2750414 2750423 Tcfl5_MA0632.1 6.415817690851303 + +chr1 2750414 2750423 Tcfl5_MA0632.1 6.415817690851303 - +chr1 3624803 3624812 Tcfl5_MA0632.1 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27490137 27490147 YY2_MA0748.1 11.417957276785325 + +chr1 27726079 27726089 YY2_MA0748.1 7.616020136192265 - +chr1 27830834 27830844 YY2_MA0748.1 7.860118973693904 - +chr1 27914572 27914582 YY2_MA0748.1 8.069193319432580 - +chr1 28328879 28328889 YY2_MA0748.1 8.803982868257494 + +chr1 28369602 28369612 YY2_MA0748.1 9.012255162813846 + +chr1 28643382 28643392 YY2_MA0748.1 9.062113435902727 + +chr1 29181517 29181527 YY2_MA0748.1 7.778539037328702 - +chr1 30718864 30718874 YY2_MA0748.1 7.806378902596093 - +chr1 31065703 31065713 YY2_MA0748.1 8.592673844618277 - +chr1 31296748 31296758 YY2_MA0748.1 8.075010907068474 - +chr1 31549410 31549420 YY2_MA0748.1 7.484651028251849 - +chr1 32108049 32108059 YY2_MA0748.1 8.863686366203199 + +chr1 32394406 32394416 YY2_MA0748.1 8.658626517133927 + +chr1 32500586 32500596 YY2_MA0748.1 7.562160475624264 + +chr1 32651132 32651142 YY2_MA0748.1 9.438456119827634 + +chr1 32651300 32651310 YY2_MA0748.1 7.690567956991559 + +chr1 32817627 32817637 YY2_MA0748.1 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YY2_MA0748.1 8.840728636646077 + +chr1 54887294 54887304 YY2_MA0748.1 8.160007548276013 - +chr1 55215345 55215355 YY2_MA0748.1 7.616020136192263 + +chr1 56135661 56135671 YY2_MA0748.1 8.397137267230086 + +chr1 58700044 58700054 YY2_MA0748.1 8.462392253407907 + +chr1 61725112 61725122 YY2_MA0748.1 8.803982868257494 + +chr1 64745171 64745181 YY2_MA0748.1 7.827329159831484 - +chr1 65067701 65067711 YY2_MA0748.1 8.085459727476715 + +chr1 65067743 65067753 YY2_MA0748.1 7.590199440877409 - +chr1 65420723 65420733 YY2_MA0748.1 8.355544125664203 - +chr1 66930390 66930400 YY2_MA0748.1 8.443515206001344 - +chr1 67054005 67054015 YY2_MA0748.1 7.782341324822067 + +chr1 70685601 70685611 YY2_MA0748.1 7.768488702737828 - +chr1 74197824 74197834 YY2_MA0748.1 8.625836703271508 - +chr1 77682730 77682740 YY2_MA0748.1 8.437267158903834 - +chr1 77683716 77683726 YY2_MA0748.1 9.350126442672883 + +chr1 77779545 77779555 YY2_MA0748.1 9.012255162813847 - +chr1 77979074 77979084 YY2_MA0748.1 10.193248776331513 - +chr1 85201579 85201589 YY2_MA0748.1 7.656581119784573 + +chr1 86704012 86704022 YY2_MA0748.1 7.435717808874635 + diff --git a/demo/known_tfbs_chr1_hg38/ZBED1_MA0749.1.bed b/demo/known_tfbs_chr1_hg38/ZBED1_MA0749.1.bed new file mode 100644 index 0000000..e69de29 diff --git a/demo/known_tfbs_chr1_hg38/ZBTB18_MA0698.1.bed b/demo/known_tfbs_chr1_hg38/ZBTB18_MA0698.1.bed new file mode 100644 index 0000000..3ea9ca8 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/ZBTB18_MA0698.1.bed @@ -0,0 +1,345 @@ +chr1 1511996 1512008 ZBTB18_MA0698.1 8.463333929067913 + +chr1 1678017 1678029 ZBTB18_MA0698.1 6.159506089669895 - +chr1 2133273 2133285 ZBTB18_MA0698.1 7.127244548643737 - +chr1 2133462 2133474 ZBTB18_MA0698.1 6.259729364752458 + +chr1 2133499 2133511 ZBTB18_MA0698.1 6.058023432626314 + +chr1 2133533 2133545 ZBTB18_MA0698.1 6.259729364752458 + +chr1 2642896 2642908 ZBTB18_MA0698.1 7.881185643070863 + +chr1 2653215 2653227 ZBTB18_MA0698.1 6.267702730745309 - +chr1 3656255 3656267 ZBTB18_MA0698.1 7.208022389930667 + +chr1 3656605 3656617 ZBTB18_MA0698.1 7.517812464460540 - +chr1 3665869 3665881 ZBTB18_MA0698.1 6.028853886647643 - +chr1 3857593 3857605 ZBTB18_MA0698.1 6.686623152551166 - +chr1 8097626 8097638 ZBTB18_MA0698.1 6.997920803590830 + +chr1 8283443 8283455 ZBTB18_MA0698.1 9.874615598235014 - +chr1 8427574 8427586 ZBTB18_MA0698.1 7.159805970203965 - +chr1 8427730 8427742 ZBTB18_MA0698.1 8.461678881981646 - +chr1 9413274 9413286 ZBTB18_MA0698.1 6.965062660982150 + +chr1 9413399 9413411 ZBTB18_MA0698.1 8.499312984819257 + +chr1 9950586 9950598 ZBTB18_MA0698.1 6.630245530495483 - +chr1 11012586 11012598 ZBTB18_MA0698.1 6.770594935747416 - +chr1 12040591 12040603 ZBTB18_MA0698.1 8.582534398473575 - +chr1 12040616 12040628 ZBTB18_MA0698.1 6.154752570839805 - +chr1 12078704 12078716 ZBTB18_MA0698.1 6.770565061905463 + +chr1 12078773 12078785 ZBTB18_MA0698.1 6.488894464580686 + +chr1 12436177 12436189 ZBTB18_MA0698.1 6.085951584285564 - +chr1 13749248 13749260 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8.951427479717463 + +chr1 33099497 33099509 ZBTB18_MA0698.1 6.834069164491310 + +chr1 34530199 34530211 ZBTB18_MA0698.1 7.474545746766286 + +chr1 34530543 34530555 ZBTB18_MA0698.1 8.304361010836384 - +chr1 35506451 35506463 ZBTB18_MA0698.1 6.568101298281048 - +chr1 36023550 36023562 ZBTB18_MA0698.1 10.673046593018874 - +chr1 37288976 37288988 ZBTB18_MA0698.1 9.709902971307496 + +chr1 38816022 38816034 ZBTB18_MA0698.1 8.354759088811536 + +chr1 39509626 39509638 ZBTB18_MA0698.1 6.530932121799343 + +chr1 40097154 40097166 ZBTB18_MA0698.1 8.050002236073071 + +chr1 40161208 40161220 ZBTB18_MA0698.1 8.371786835268191 + +chr1 40628582 40628594 ZBTB18_MA0698.1 7.245458824485828 + +chr1 42456132 42456144 ZBTB18_MA0698.1 10.601633683639824 - +chr1 43368311 43368323 ZBTB18_MA0698.1 6.982292277240498 - +chr1 43974754 43974766 ZBTB18_MA0698.1 7.546861091745100 + +chr1 45011302 45011314 ZBTB18_MA0698.1 7.119581476291660 - +chr1 45052975 45052987 ZBTB18_MA0698.1 7.957391948563548 + +chr1 45394313 45394325 ZBTB18_MA0698.1 9.283928317482172 - +chr1 45544212 45544224 ZBTB18_MA0698.1 6.712725994895020 - +chr1 45550912 45550924 ZBTB18_MA0698.1 7.480786050688300 + +chr1 45751026 45751038 ZBTB18_MA0698.1 7.277704722490591 - +chr1 46302635 46302647 ZBTB18_MA0698.1 6.653029184475076 + +chr1 46668062 46668074 ZBTB18_MA0698.1 6.506674130156626 - +chr1 50349022 50349034 ZBTB18_MA0698.1 6.464049427523096 + +chr1 50969039 50969051 ZBTB18_MA0698.1 9.488046129831776 - +chr1 51235113 51235125 ZBTB18_MA0698.1 6.260824460604896 + +chr1 51285199 51285211 ZBTB18_MA0698.1 9.164869552331744 + +chr1 51729331 51729343 ZBTB18_MA0698.1 6.554787701791632 - +chr1 52056204 52056216 ZBTB18_MA0698.1 6.800381769253097 + +chr1 54801397 54801409 ZBTB18_MA0698.1 6.675576439003322 + +chr1 55205183 55205195 ZBTB18_MA0698.1 7.389850116984333 + +chr1 55205184 55205196 ZBTB18_MA0698.1 6.505656550062526 - +chr1 56135555 56135567 ZBTB18_MA0698.1 7.120873956217325 + +chr1 56296207 56296219 ZBTB18_MA0698.1 10.319568400205283 + +chr1 56565385 56565397 ZBTB18_MA0698.1 6.252278641316090 + +chr1 57125162 57125174 ZBTB18_MA0698.1 7.302640645452271 + +chr1 58392249 58392261 ZBTB18_MA0698.1 6.065261923377194 - +chr1 58573820 58573832 ZBTB18_MA0698.1 9.180696385674882 + +chr1 58784505 58784517 ZBTB18_MA0698.1 7.385187002931483 + +chr1 58997052 58997064 ZBTB18_MA0698.1 8.415602836802023 + +chr1 59697008 59697020 ZBTB18_MA0698.1 7.509869665311796 + +chr1 59759589 59759601 ZBTB18_MA0698.1 7.145474982544475 + +chr1 62613401 62613413 ZBTB18_MA0698.1 6.770565061905463 + +chr1 62784507 62784519 ZBTB18_MA0698.1 6.674299157053184 + +chr1 63124769 63124781 ZBTB18_MA0698.1 7.312547508585596 - +chr1 63523424 63523436 ZBTB18_MA0698.1 7.638745179378646 - +chr1 64172428 64172440 ZBTB18_MA0698.1 9.916499541813176 + +chr1 64882910 64882922 ZBTB18_MA0698.1 6.284371505144642 + +chr1 64882960 64882972 ZBTB18_MA0698.1 10.422812822225435 + +chr1 64895617 64895629 ZBTB18_MA0698.1 9.648228773083222 - +chr1 65812373 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11736192 ZEB1_MA0103.3 9.424375655970884 - +chr1 11805976 11805986 ZEB1_MA0103.3 9.324129584728508 - +chr1 11806295 11806305 ZEB1_MA0103.3 8.390906697815288 - +chr1 11806441 11806451 ZEB1_MA0103.3 9.316774659617444 - +chr1 11909246 11909256 ZEB1_MA0103.3 8.666279271091438 + +chr1 11926088 11926098 ZEB1_MA0103.3 8.160861474489561 - +chr1 12019459 12019469 ZEB1_MA0103.3 8.105940047752760 + +chr1 12079156 12079166 ZEB1_MA0103.3 8.566584100408589 - +chr1 13700656 13700666 ZEB1_MA0103.3 8.703501219056811 + +chr1 13730751 13730761 ZEB1_MA0103.3 8.285207949202094 - +chr1 13731158 13731168 ZEB1_MA0103.3 8.754694827962734 - +chr1 14913876 14913886 ZEB1_MA0103.3 8.827581778080011 - +chr1 14914096 14914106 ZEB1_MA0103.3 8.102030624030261 + +chr1 15603504 15603514 ZEB1_MA0103.3 8.247370192727795 - +chr1 15975978 15975988 ZEB1_MA0103.3 8.989966840357258 + +chr1 16217447 16217457 ZEB1_MA0103.3 8.860779906173539 + +chr1 16237187 16237197 ZEB1_MA0103.3 9.849538368977372 - +chr1 16352250 16352260 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167676755 ZEB1_MA0103.3 8.690242347911949 + +chr1 167716464 167716474 ZEB1_MA0103.3 8.658667198232061 + +chr1 168225942 168225952 ZEB1_MA0103.3 9.348226283824344 - +chr1 168554410 168554420 ZEB1_MA0103.3 9.016808530094023 + +chr1 169105810 169105820 ZEB1_MA0103.3 8.823578870345079 - +chr1 169106011 169106021 ZEB1_MA0103.3 8.646434482678499 - +chr1 169586665 169586675 ZEB1_MA0103.3 8.367443587458977 - +chr1 169711426 169711436 ZEB1_MA0103.3 8.827581778080011 + +chr1 171645387 171645397 ZEB1_MA0103.3 9.317253713944732 + +chr1 172449891 172449901 ZEB1_MA0103.3 9.502738989602193 + +chr1 172725028 172725038 ZEB1_MA0103.3 8.564804127350769 + +chr1 173355625 173355635 ZEB1_MA0103.3 8.547321651333384 - +chr1 173868749 173868759 ZEB1_MA0103.3 8.182089419899301 + +chr1 174022257 174022267 ZEB1_MA0103.3 9.003070604621875 + +chr1 174159866 174159876 ZEB1_MA0103.3 8.190729069811876 - +chr1 175413004 175413014 ZEB1_MA0103.3 8.878353075466094 - +chr1 175413266 175413276 ZEB1_MA0103.3 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181022350 ZEB1_MA0103.3 9.303515788472584 + +chr1 181022813 181022823 ZEB1_MA0103.3 8.387092366131794 - +chr1 181062460 181062470 ZEB1_MA0103.3 8.410535360954187 - +chr1 181504717 181504727 ZEB1_MA0103.3 8.983583839996173 - +chr1 181514423 181514433 ZEB1_MA0103.3 9.083312479850218 + +chr1 181514548 181514558 ZEB1_MA0103.3 8.885708000577159 + +chr1 181514600 181514610 ZEB1_MA0103.3 8.095647623669178 - +chr1 182428183 182428193 ZEB1_MA0103.3 8.053005830530804 - +chr1 182604222 182604232 ZEB1_MA0103.3 8.340135400429205 - +chr1 182677544 182677554 ZEB1_MA0103.3 8.267248450311929 + +chr1 183022857 183022867 ZEB1_MA0103.3 9.059869485027823 + +chr1 183023982 183023992 ZEB1_MA0103.3 8.298945874674244 + +chr1 183024006 183024016 ZEB1_MA0103.3 9.303515788472584 + +chr1 183070992 183071002 ZEB1_MA0103.3 8.577907891615386 + +chr1 183195220 183195230 ZEB1_MA0103.3 8.520810336675666 - +chr1 183636132 183636142 ZEB1_MA0103.3 9.240625287470904 - +chr1 183807739 183807749 ZEB1_MA0103.3 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193121743 ZEB1_MA0103.3 8.023016182286705 + +chr1 193449400 193449410 ZEB1_MA0103.3 8.461994885549444 + +chr1 194289664 194289674 ZEB1_MA0103.3 8.048263148949379 + +chr1 194289766 194289776 ZEB1_MA0103.3 8.976269107596591 - +chr1 194289935 194289945 ZEB1_MA0103.3 9.236264928416739 + +chr1 194295803 194295813 ZEB1_MA0103.3 8.410535360954187 - +chr1 194830602 194830612 ZEB1_MA0103.3 8.202531915345959 - +chr1 196952197 196952207 ZEB1_MA0103.3 8.223409766517069 - +chr1 197182521 197182531 ZEB1_MA0103.3 8.221177780671153 + +chr1 197775535 197775545 ZEB1_MA0103.3 8.369378667397042 + +chr1 197902504 197902514 ZEB1_MA0103.3 8.230047414483471 + +chr1 198056593 198056603 ZEB1_MA0103.3 8.827581778080011 - +chr1 198202464 198202474 ZEB1_MA0103.3 8.340135400429205 - +chr1 198937300 198937310 ZEB1_MA0103.3 8.048263148949378 - +chr1 199172789 199172799 ZEB1_MA0103.3 8.414858880740185 - +chr1 199243608 199243618 ZEB1_MA0103.3 8.216022009208189 + +chr1 199977930 199977940 ZEB1_MA0103.3 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203007168 ZEB1_MA0103.3 8.127895141581408 - +chr1 203007302 203007312 ZEB1_MA0103.3 8.210305429784446 + +chr1 203026624 203026634 ZEB1_MA0103.3 9.089695480211299 - +chr1 203273216 203273226 ZEB1_MA0103.3 8.397152089172305 - +chr1 203290351 203290361 ZEB1_MA0103.3 8.398261622926354 + +chr1 203290384 203290394 ZEB1_MA0103.3 8.658149766843728 - +chr1 203290549 203290559 ZEB1_MA0103.3 8.727853138225969 + diff --git a/demo/known_tfbs_chr1_hg38/ZIC1_MA0696.1.bed b/demo/known_tfbs_chr1_hg38/ZIC1_MA0696.1.bed new file mode 100644 index 0000000..a6798bd --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/ZIC1_MA0696.1.bed @@ -0,0 +1,827 @@ +chr1 181745 181758 ZIC1_MA0696.1 6.651156188703776 + +chr1 827426 827439 ZIC1_MA0696.1 5.100817684641422 - +chr1 827644 827657 ZIC1_MA0696.1 5.703049490766197 + +chr1 1019460 1019473 ZIC1_MA0696.1 4.417791430123376 + +chr1 1033127 1033140 ZIC1_MA0696.1 5.070661421207509 - +chr1 1033404 1033417 ZIC1_MA0696.1 9.507562436631263 + +chr1 1157846 1157859 ZIC1_MA0696.1 7.018595772587270 - +chr1 1157998 1158011 ZIC1_MA0696.1 9.123999874467195 + +chr1 1308002 1308015 ZIC1_MA0696.1 6.253835269723819 + +chr1 1308054 1308067 ZIC1_MA0696.1 5.133086470847759 + +chr1 1324638 1324651 ZIC1_MA0696.1 8.009712969258043 + +chr1 1349413 1349426 ZIC1_MA0696.1 8.010328930092667 - +chr1 1511794 1511807 ZIC1_MA0696.1 8.428327529481400 - +chr1 1511848 1511861 ZIC1_MA0696.1 7.287290449664515 + +chr1 1574531 1574544 ZIC1_MA0696.1 7.552236356298025 + +chr1 1630218 1630231 ZIC1_MA0696.1 8.150288691622734 + +chr1 1630452 1630465 ZIC1_MA0696.1 8.233546310397708 + +chr1 1677909 1677922 ZIC1_MA0696.1 4.479036361025178 + +chr1 1678188 1678201 ZIC1_MA0696.1 5.035413564252336 + +chr1 1678457 1678470 ZIC1_MA0696.1 7.333896103898231 + +chr1 1693171 1693184 ZIC1_MA0696.1 5.583066249946693 + +chr1 1746451 1746464 ZIC1_MA0696.1 5.583066249946693 + +chr1 1778460 1778473 ZIC1_MA0696.1 6.736547860878832 + +chr1 1778848 1778861 ZIC1_MA0696.1 7.535485765225879 - +chr1 1890872 1890885 ZIC1_MA0696.1 4.474236341830307 - +chr1 1908884 1908897 ZIC1_MA0696.1 7.991220816395156 + +chr1 1919136 1919149 ZIC1_MA0696.1 6.106729472231280 + +chr1 1919702 1919715 ZIC1_MA0696.1 4.386161073743824 + +chr1 2050225 2050238 ZIC1_MA0696.1 4.388803545007461 - +chr1 2133397 2133410 ZIC1_MA0696.1 7.316389745017100 + +chr1 2133460 2133473 ZIC1_MA0696.1 8.883603160727459 + +chr1 2133531 2133544 ZIC1_MA0696.1 5.915483508633442 + +chr1 2227944 2227957 ZIC1_MA0696.1 4.803160512002679 - +chr1 2290684 2290697 ZIC1_MA0696.1 4.840475852332886 + +chr1 2300858 2300871 ZIC1_MA0696.1 10.459683333617749 + +chr1 2300914 2300927 ZIC1_MA0696.1 4.933155721166361 - +chr1 2391590 2391603 ZIC1_MA0696.1 6.083616982866580 - +chr1 2412409 2412422 ZIC1_MA0696.1 5.845961320689523 + +chr1 2412694 2412707 ZIC1_MA0696.1 4.920914607518432 - +chr1 2412901 2412914 ZIC1_MA0696.1 6.263073158279738 + +chr1 2546487 2546500 ZIC1_MA0696.1 6.792138354403885 + +chr1 2547113 2547126 ZIC1_MA0696.1 6.551721393678156 - +chr1 2555886 2555899 ZIC1_MA0696.1 6.408357039190390 - +chr1 2556409 2556422 ZIC1_MA0696.1 5.826684769537700 + +chr1 2556484 2556497 ZIC1_MA0696.1 9.287365726388334 + +chr1 2586138 2586151 ZIC1_MA0696.1 7.704481114273561 + +chr1 2642638 2642651 ZIC1_MA0696.1 5.269130555263854 - +chr1 2643078 2643091 ZIC1_MA0696.1 5.704055952526896 - +chr1 2643220 2643233 ZIC1_MA0696.1 6.241141690845059 + +chr1 2654768 2654781 ZIC1_MA0696.1 5.194366633594862 + +chr1 2683791 2683804 ZIC1_MA0696.1 5.010003821671328 + +chr1 2750482 2750495 ZIC1_MA0696.1 5.010003821671328 + +chr1 3772511 3772524 ZIC1_MA0696.1 9.145815255467104 + +chr1 3796356 3796369 ZIC1_MA0696.1 4.581749193152501 + +chr1 3856803 3856816 ZIC1_MA0696.1 5.991447466060799 + +chr1 3857333 3857346 ZIC1_MA0696.1 6.685039718345242 - +chr1 3901174 3901187 ZIC1_MA0696.1 6.259982332503156 + +chr1 3910870 3910883 ZIC1_MA0696.1 5.245258051909584 + +chr1 5992059 5992072 ZIC1_MA0696.1 5.112973151574947 + +chr1 5992192 5992205 ZIC1_MA0696.1 4.882717573954871 + +chr1 6026251 6026264 ZIC1_MA0696.1 6.994390309905754 + +chr1 6026819 6026832 ZIC1_MA0696.1 9.175629503724448 - +chr1 6199461 6199474 ZIC1_MA0696.1 6.168743886629653 - +chr1 6393162 6393175 ZIC1_MA0696.1 5.994734021211463 - +chr1 6580092 6580105 ZIC1_MA0696.1 6.944915416476390 - +chr1 6613810 6613823 ZIC1_MA0696.1 5.062619087674275 + +chr1 6625597 6625610 ZIC1_MA0696.1 5.112973151574947 + +chr1 6701630 6701643 ZIC1_MA0696.1 5.367692517907237 + +chr1 6785609 6785622 ZIC1_MA0696.1 5.845961320689523 - +chr1 6785680 6785693 ZIC1_MA0696.1 6.698616055462776 - +chr1 7771420 7771433 ZIC1_MA0696.1 5.720611086876527 - +chr1 7954237 7954250 ZIC1_MA0696.1 5.682749279798213 + +chr1 7961631 7961644 ZIC1_MA0696.1 6.427048139601648 - +chr1 8283186 8283199 ZIC1_MA0696.1 8.768747460271381 + +chr1 8817938 8817951 ZIC1_MA0696.1 4.897474591633043 - +chr1 8818020 8818033 ZIC1_MA0696.1 5.845961320689523 + +chr1 8878248 8878261 ZIC1_MA0696.1 7.943445985242801 + +chr1 9181447 9181460 ZIC1_MA0696.1 6.651156188703778 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197201052 ZIC4_MA0751.1 7.505378190654735 + +chr1 197775031 197775045 ZIC4_MA0751.1 7.981999084124848 + +chr1 197775449 197775463 ZIC4_MA0751.1 9.968566077414565 + +chr1 197902532 197902546 ZIC4_MA0751.1 9.766901908768734 + +chr1 198056442 198056456 ZIC4_MA0751.1 8.448862461538170 + +chr1 198157132 198157146 ZIC4_MA0751.1 9.168554523892059 - +chr1 198353070 198353084 ZIC4_MA0751.1 9.903201994870042 - +chr1 200620584 200620598 ZIC4_MA0751.1 6.976682875744107 + +chr1 201170900 201170914 ZIC4_MA0751.1 7.362887212718155 + +chr1 201171301 201171315 ZIC4_MA0751.1 9.343125330558507 - +chr1 201469197 201469211 ZIC4_MA0751.1 9.336093626031589 + +chr1 201469279 201469293 ZIC4_MA0751.1 9.123907363739709 - +chr1 201482393 201482407 ZIC4_MA0751.1 8.265283769077328 + +chr1 201513116 201513130 ZIC4_MA0751.1 7.548475974026115 + +chr1 201982971 201982985 ZIC4_MA0751.1 7.495054979853478 + +chr1 202144369 202144383 ZIC4_MA0751.1 7.912513887870274 - +chr1 202342125 202342139 ZIC4_MA0751.1 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44722123 ZNF143_MA0088.2 12.421482386051840 - +chr1 44731362 44731377 ZNF143_MA0088.2 18.182092343229012 - +chr1 44739665 44739680 ZNF143_MA0088.2 5.029215610906026 + +chr1 44820191 44820206 ZNF143_MA0088.2 11.874917831888204 - +chr1 45340505 45340520 ZNF143_MA0088.2 2.070414752390694 - +chr1 45550764 45550779 ZNF143_MA0088.2 4.111692506214057 - +chr1 45583922 45583937 ZNF143_MA0088.2 0.488865201592240 - +chr1 46043842 46043857 ZNF143_MA0088.2 0.013666912529932 + +chr1 46133001 46133016 ZNF143_MA0088.2 2.616703020024847 - +chr1 46616286 46616301 ZNF143_MA0088.2 4.697965348996334 + +chr1 51268194 51268209 ZNF143_MA0088.2 1.778283566037530 - +chr1 51501263 51501278 ZNF143_MA0088.2 0.296019934340845 - +chr1 51519236 51519251 ZNF143_MA0088.2 2.074126013660346 + +chr1 52032842 52032857 ZNF143_MA0088.2 0.108735168856994 - +chr1 52055349 52055364 ZNF143_MA0088.2 4.899070992046598 - +chr1 52637434 52637449 ZNF143_MA0088.2 -0.341409484583187 - +chr1 53197062 53197077 ZNF143_MA0088.2 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84388901 ZNF143_MA0088.2 1.502280306449757 + +chr1 84479616 84479631 ZNF143_MA0088.2 2.844328176535615 - +chr1 84573931 84573946 ZNF143_MA0088.2 3.070103243003477 + +chr1 84854578 84854593 ZNF143_MA0088.2 1.939456320341373 + +chr1 84854611 84854626 ZNF143_MA0088.2 1.637279971740152 - +chr1 84969960 84969975 ZNF143_MA0088.2 0.207624196168758 - +chr1 85298304 85298319 ZNF143_MA0088.2 4.094174144165777 + +chr1 85298418 85298433 ZNF143_MA0088.2 0.570154283541007 - +chr1 86617193 86617208 ZNF143_MA0088.2 2.837390763771960 + +chr1 86913889 86913904 ZNF143_MA0088.2 1.452304555778261 - +chr1 87045660 87045675 ZNF143_MA0088.2 -0.109634419324516 + +chr1 87057552 87057567 ZNF143_MA0088.2 4.403880622211510 + +chr1 87057930 87057945 ZNF143_MA0088.2 5.442774037261891 - +chr1 87813317 87813332 ZNF143_MA0088.2 0.456882371739477 - +chr1 89693977 89693992 ZNF143_MA0088.2 2.549055604381280 + +chr1 89694089 89694104 ZNF143_MA0088.2 2.549628743729669 - +chr1 89781146 89781161 ZNF143_MA0088.2 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101357677 101357692 ZNF143_MA0088.2 -0.189010820229582 - +chr1 101364439 101364454 ZNF143_MA0088.2 4.270907731904429 - +chr1 101389177 101389192 ZNF143_MA0088.2 4.892863184939420 - +chr1 102434522 102434537 ZNF143_MA0088.2 -0.341497237024031 + +chr1 103784089 103784104 ZNF143_MA0088.2 -0.071444431375097 + +chr1 104759962 104759977 ZNF143_MA0088.2 1.894558066737741 - +chr1 104768391 104768406 ZNF143_MA0088.2 1.272952980795516 + +chr1 104932894 104932909 ZNF143_MA0088.2 1.522096844024994 - +chr1 104987502 104987517 ZNF143_MA0088.2 1.845432842042363 - +chr1 106072942 106072957 ZNF143_MA0088.2 3.027075616424006 + +chr1 107010788 107010803 ZNF143_MA0088.2 0.425718067641358 - +chr1 107964805 107964820 ZNF143_MA0088.2 2.306987606199442 - +chr1 108692952 108692967 ZNF143_MA0088.2 1.140865932410164 - +chr1 109100123 109100138 ZNF143_MA0088.2 4.970072203706106 + +chr1 109426262 109426277 ZNF143_MA0088.2 2.791596553074305 + +chr1 109619927 109619942 ZNF143_MA0088.2 2.380030555938506 + +chr1 109687923 109687938 ZNF143_MA0088.2 2.216222180460029 - +chr1 110631036 110631051 ZNF143_MA0088.2 1.152890577953295 + +chr1 110631325 110631340 ZNF143_MA0088.2 0.430465108740062 + +chr1 111222410 111222425 ZNF143_MA0088.2 -0.249128270512427 - +chr1 112715986 112716001 ZNF143_MA0088.2 6.790701295184384 + +chr1 112955894 112955909 ZNF143_MA0088.2 1.533936265829566 + +chr1 112956913 112956928 ZNF143_MA0088.2 0.814799602105611 - +chr1 113858529 113858544 ZNF143_MA0088.2 0.823425542342244 - +chr1 114670368 114670383 ZNF143_MA0088.2 1.588177609779219 - +chr1 115098988 115099003 ZNF143_MA0088.2 8.025596000868948 - +chr1 115608292 115608307 ZNF143_MA0088.2 4.215929780856527 + +chr1 116737805 116737820 ZNF143_MA0088.2 2.541420503709785 + +chr1 116738888 116738903 ZNF143_MA0088.2 0.761975407306050 + +chr1 116827002 116827017 ZNF143_MA0088.2 0.505268480880213 + +chr1 117059754 117059769 ZNF143_MA0088.2 3.610587002705513 + +chr1 117059891 117059906 ZNF143_MA0088.2 2.376825153201024 + +chr1 117060218 117060233 ZNF143_MA0088.2 7.377552126092571 - +chr1 117060314 117060329 ZNF143_MA0088.2 0.206765369572044 - +chr1 117928999 117929014 ZNF143_MA0088.2 1.258894539542356 - +chr1 119140828 119140843 ZNF143_MA0088.2 1.407111268847398 + +chr1 119348149 119348164 ZNF143_MA0088.2 5.278063890942104 + +chr1 119565234 119565249 ZNF143_MA0088.2 0.821131808512644 - +chr1 119648321 119648336 ZNF143_MA0088.2 10.573200886582377 + +chr1 119675575 119675590 ZNF143_MA0088.2 2.925211028421427 + +chr1 120724416 120724431 ZNF143_MA0088.2 3.666640296599188 + +chr1 145425698 145425713 ZNF143_MA0088.2 0.066560374387083 - +chr1 145845710 145845725 ZNF143_MA0088.2 0.291098315302873 - +chr1 145932800 145932815 ZNF143_MA0088.2 3.974268834580769 - +chr1 145957568 145957583 ZNF143_MA0088.2 5.896866736401583 - +chr1 146037489 146037504 ZNF143_MA0088.2 7.585655846531074 + +chr1 147670603 147670618 ZNF143_MA0088.2 0.929906190498776 + +chr1 148334692 148334707 ZNF143_MA0088.2 1.052665368561086 + +chr1 149813314 149813329 ZNF143_MA0088.2 0.905465068962749 - +chr1 149888230 149888245 ZNF143_MA0088.2 7.474867545939945 - +chr1 149899503 149899518 ZNF143_MA0088.2 1.003891087605546 + +chr1 149899570 149899585 ZNF143_MA0088.2 6.037406841637119 + +chr1 149998051 149998066 ZNF143_MA0088.2 -0.268850976112272 + +chr1 151157225 151157240 ZNF143_MA0088.2 2.124191840429109 - +chr1 151327596 151327611 ZNF143_MA0088.2 1.746717603417694 + +chr1 151611989 151612004 ZNF143_MA0088.2 1.420193560278708 + +chr1 152908339 152908354 ZNF143_MA0088.2 2.056437210280082 + +chr1 153946785 153946800 ZNF143_MA0088.2 3.223715765717506 + diff --git a/demo/known_tfbs_chr1_hg38/ZNF24_MA1124.1.bed b/demo/known_tfbs_chr1_hg38/ZNF24_MA1124.1.bed new file mode 100644 index 0000000..c1e2fbe --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/ZNF24_MA1124.1.bed @@ -0,0 +1,348 @@ +chr1 1308328 1308340 ZNF24_MA1124.1 11.835452097444435 - +chr1 1308332 1308344 ZNF24_MA1124.1 7.029366007367321 - +chr1 1308340 1308352 ZNF24_MA1124.1 10.234111142034481 - +chr1 1308344 1308356 ZNF24_MA1124.1 6.581982054431357 - +chr1 3666364 3666376 ZNF24_MA1124.1 5.923373569468873 - +chr1 3677662 3677674 ZNF24_MA1124.1 6.717584539914206 + +chr1 6393374 6393386 ZNF24_MA1124.1 9.295344079636404 - +chr1 6861494 6861506 ZNF24_MA1124.1 12.260983604421561 - +chr1 7961245 7961257 ZNF24_MA1124.1 7.647167782645274 - +chr1 8283387 8283399 ZNF24_MA1124.1 6.338905979576518 - +chr1 8764454 8764466 ZNF24_MA1124.1 7.136397245262267 + +chr1 8878793 8878805 ZNF24_MA1124.1 7.490590097534124 + +chr1 8878797 8878809 ZNF24_MA1124.1 7.804300248904729 + +chr1 9069505 9069517 ZNF24_MA1124.1 6.445888672673615 + +chr1 9413532 9413544 ZNF24_MA1124.1 7.071170840720846 - +chr1 9539284 9539296 ZNF24_MA1124.1 7.140927715640434 + +chr1 10210196 10210208 ZNF24_MA1124.1 5.939007366568954 + +chr1 10965123 10965135 ZNF24_MA1124.1 6.382825454499862 + +chr1 12040097 12040109 ZNF24_MA1124.1 5.850110801901629 - +chr1 12040101 12040113 ZNF24_MA1124.1 5.850110801901629 - 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8.619418285234353 - +chr1 31549239 31549251 ZNF24_MA1124.1 5.782065091882466 + +chr1 31549243 31549255 ZNF24_MA1124.1 8.651432841276998 + +chr1 31549247 31549259 ZNF24_MA1124.1 7.370440361068754 + +chr1 32394635 32394647 ZNF24_MA1124.1 5.744505033428257 + +chr1 32650731 32650743 ZNF24_MA1124.1 6.959202636772345 + +chr1 33461288 33461300 ZNF24_MA1124.1 6.379118918679146 - +chr1 33903020 33903032 ZNF24_MA1124.1 7.140504073415824 - +chr1 37901658 37901670 ZNF24_MA1124.1 6.823888480005077 + +chr1 39196059 39196071 ZNF24_MA1124.1 8.840899839446429 + +chr1 39196063 39196075 ZNF24_MA1124.1 9.737731227604993 + +chr1 39666974 39666986 ZNF24_MA1124.1 7.606306563587337 + +chr1 39955818 39955830 ZNF24_MA1124.1 6.829855298889335 + +chr1 40097104 40097116 ZNF24_MA1124.1 6.391636725342206 + +chr1 40186666 40186678 ZNF24_MA1124.1 6.034802170601282 + +chr1 40980256 40980268 ZNF24_MA1124.1 6.720384064038678 + +chr1 41003943 41003955 ZNF24_MA1124.1 7.029952294036163 + +chr1 41003947 41003959 ZNF24_MA1124.1 9.949152085062746 + +chr1 41662442 41662454 ZNF24_MA1124.1 6.061163396607006 + +chr1 43221634 43221646 ZNF24_MA1124.1 7.868360307157451 + +chr1 44730653 44730665 ZNF24_MA1124.1 6.613198260303923 - +chr1 45686900 45686912 ZNF24_MA1124.1 11.083661221283682 - +chr1 45686904 45686916 ZNF24_MA1124.1 7.137441879974492 - +chr1 45803393 45803405 ZNF24_MA1124.1 7.526843925711166 - +chr1 45803397 45803409 ZNF24_MA1124.1 12.051595375275465 - +chr1 45803401 45803413 ZNF24_MA1124.1 11.590600405919416 - +chr1 46616641 46616653 ZNF24_MA1124.1 6.452504273301637 - +chr1 47351475 47351487 ZNF24_MA1124.1 7.132785361966979 + +chr1 48498565 48498577 ZNF24_MA1124.1 5.896618921037074 + +chr1 48730622 48730634 ZNF24_MA1124.1 6.238509543740435 + +chr1 51235121 51235133 ZNF24_MA1124.1 6.759973083356799 - +chr1 51491395 51491407 ZNF24_MA1124.1 5.831860752296467 - +chr1 52033068 52033080 ZNF24_MA1124.1 6.433145001335463 - +chr1 52404149 52404161 ZNF24_MA1124.1 7.536237929435549 - +chr1 53326419 53326431 ZNF24_MA1124.1 6.025441269727118 + +chr1 53326423 53326435 ZNF24_MA1124.1 8.918819483911721 + +chr1 54715635 54715647 ZNF24_MA1124.1 9.325616919503243 - +chr1 54715639 54715651 ZNF24_MA1124.1 9.981193810530476 - +chr1 56045503 56045515 ZNF24_MA1124.1 10.270656925511727 + +chr1 56296303 56296315 ZNF24_MA1124.1 6.264813516895801 - +chr1 57125292 57125304 ZNF24_MA1124.1 8.259482882925784 - +chr1 57167925 57167937 ZNF24_MA1124.1 8.711575830547757 - +chr1 58578224 58578236 ZNF24_MA1124.1 9.100671567455379 - +chr1 61332687 61332699 ZNF24_MA1124.1 7.558036800386380 + +chr1 61332691 61332703 ZNF24_MA1124.1 5.802847231882636 + +chr1 61724821 61724833 ZNF24_MA1124.1 6.677958975864079 + +chr1 62613720 62613732 ZNF24_MA1124.1 8.579563971833435 + +chr1 62613724 62613736 ZNF24_MA1124.1 7.835170574194480 + +chr1 62784790 62784802 ZNF24_MA1124.1 9.934614699625371 + +chr1 62810176 62810188 ZNF24_MA1124.1 7.467699413535867 + +chr1 62810180 62810192 ZNF24_MA1124.1 14.488765164313712 + +chr1 64957122 64957134 ZNF24_MA1124.1 7.531793789082966 - +chr1 64957126 64957138 ZNF24_MA1124.1 7.137441879974492 - +chr1 65068562 65068574 ZNF24_MA1124.1 7.302155327578745 + +chr1 65688010 65688022 ZNF24_MA1124.1 6.984445378119833 + +chr1 66283034 66283046 ZNF24_MA1124.1 6.311657596994225 + +chr1 66283905 66283917 ZNF24_MA1124.1 7.149007661760546 + +chr1 66283924 66283936 ZNF24_MA1124.1 7.824687217722657 + +chr1 66283928 66283940 ZNF24_MA1124.1 11.510760633734906 + +chr1 66283932 66283944 ZNF24_MA1124.1 11.839060418421026 + +chr1 66284022 66284034 ZNF24_MA1124.1 5.939866783295335 - +chr1 66335867 66335879 ZNF24_MA1124.1 6.254821319145715 + +chr1 66365146 66365158 ZNF24_MA1124.1 10.952863322411471 - +chr1 66365150 66365162 ZNF24_MA1124.1 14.488765164313712 - +chr1 66374974 66374986 ZNF24_MA1124.1 9.158388951609775 + +chr1 66380842 66380854 ZNF24_MA1124.1 6.471870337594137 - +chr1 66649002 66649014 ZNF24_MA1124.1 6.077714214461478 + +chr1 67339720 67339732 ZNF24_MA1124.1 10.770794043197322 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5.850110801901629 + +chr1 77219742 77219754 ZNF24_MA1124.1 5.850110801901629 + +chr1 77770814 77770826 ZNF24_MA1124.1 6.042410937712291 + +chr1 77770818 77770830 ZNF24_MA1124.1 8.207050244937353 + +chr1 78145471 78145483 ZNF24_MA1124.1 8.972958437457271 - +chr1 78619839 78619851 ZNF24_MA1124.1 7.587876115807736 - +chr1 79040443 79040455 ZNF24_MA1124.1 7.713258616590247 + +chr1 79777919 79777931 ZNF24_MA1124.1 6.803937555341336 - +chr1 79777923 79777935 ZNF24_MA1124.1 11.919745463687880 - +chr1 81505710 81505722 ZNF24_MA1124.1 5.795384155576999 - +chr1 81548875 81548887 ZNF24_MA1124.1 10.831226518356265 - +chr1 81598875 81598887 ZNF24_MA1124.1 8.733677937656399 - +chr1 81598879 81598891 ZNF24_MA1124.1 7.521852357487160 - +chr1 81598912 81598924 ZNF24_MA1124.1 6.336165691519356 + +chr1 84854377 84854389 ZNF24_MA1124.1 6.382825454499862 + +chr1 84995876 84995888 ZNF24_MA1124.1 8.632959661140829 + +chr1 86617104 86617116 ZNF24_MA1124.1 6.198739383727618 - +chr1 86704174 86704186 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90358530 ZNF24_MA1124.1 7.142860439115698 + +chr1 90358522 90358534 ZNF24_MA1124.1 8.492451723848299 + +chr1 90509578 90509590 ZNF24_MA1124.1 9.009108186972204 - +chr1 90509965 90509977 ZNF24_MA1124.1 5.850110801901629 + +chr1 90510314 90510326 ZNF24_MA1124.1 6.238976065117088 - +chr1 91501181 91501193 ZNF24_MA1124.1 6.076060395126519 + +chr1 91501185 91501197 ZNF24_MA1124.1 11.839060418421026 + +chr1 91752469 91752481 ZNF24_MA1124.1 7.396674091526217 - +chr1 93033857 93033869 ZNF24_MA1124.1 7.211558132216491 + +chr1 93079687 93079699 ZNF24_MA1124.1 6.329795050146235 - +chr1 93079691 93079703 ZNF24_MA1124.1 7.966420515884578 - +chr1 93346779 93346791 ZNF24_MA1124.1 7.836893829785927 + +chr1 93607990 93608002 ZNF24_MA1124.1 5.818312106100773 - +chr1 93615473 93615485 ZNF24_MA1124.1 8.535936706086753 + +chr1 93681003 93681015 ZNF24_MA1124.1 6.149690813778832 + +chr1 93681007 93681019 ZNF24_MA1124.1 10.119635040706187 + +chr1 93693485 93693497 ZNF24_MA1124.1 7.167766077728984 - +chr1 93703957 93703969 ZNF24_MA1124.1 5.893577955298902 - +chr1 93703985 93703997 ZNF24_MA1124.1 7.792076003992408 + +chr1 93704236 93704248 ZNF24_MA1124.1 5.785082931115451 + +chr1 93716259 93716271 ZNF24_MA1124.1 6.729949545707854 - +chr1 93879449 93879461 ZNF24_MA1124.1 8.107659576838618 + +chr1 93879453 93879465 ZNF24_MA1124.1 7.149259352909772 + +chr1 94411467 94411479 ZNF24_MA1124.1 6.516564331554359 - +chr1 94962809 94962821 ZNF24_MA1124.1 5.992674273215255 - +chr1 95234440 95234452 ZNF24_MA1124.1 6.216479485986988 - +chr1 96515704 96515716 ZNF24_MA1124.1 7.136894347116125 + +chr1 96955094 96955106 ZNF24_MA1124.1 9.293776174162307 + +chr1 97159193 97159205 ZNF24_MA1124.1 7.029952294036163 - +chr1 97159487 97159499 ZNF24_MA1124.1 6.878273499106262 - +chr1 97163899 97163911 ZNF24_MA1124.1 6.052065108833854 + +chr1 97461589 97461601 ZNF24_MA1124.1 5.931787780650769 + +chr1 97461712 97461724 ZNF24_MA1124.1 6.397468476749019 + +chr1 99785030 99785042 ZNF24_MA1124.1 6.779715579336433 - 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103517631 ZNF24_MA1124.1 6.025824232168217 - +chr1 103784008 103784020 ZNF24_MA1124.1 6.472321770609058 + +chr1 104467723 104467735 ZNF24_MA1124.1 7.914127630966715 + +chr1 107459573 107459585 ZNF24_MA1124.1 6.738343255999522 + +chr1 107499941 107499953 ZNF24_MA1124.1 5.936751835732814 + +chr1 107935222 107935234 ZNF24_MA1124.1 7.973429947011897 + +chr1 107935271 107935283 ZNF24_MA1124.1 6.938549766483601 - +chr1 107935577 107935589 ZNF24_MA1124.1 9.428606892774608 + +chr1 107935581 107935593 ZNF24_MA1124.1 8.930389120537200 + +chr1 107936568 107936580 ZNF24_MA1124.1 10.111686194100887 + +chr1 107949692 107949704 ZNF24_MA1124.1 7.747404548695156 - +chr1 108551352 108551364 ZNF24_MA1124.1 8.930389120537198 - +chr1 108551356 108551368 ZNF24_MA1124.1 9.317051522218003 - +chr1 110012069 110012081 ZNF24_MA1124.1 7.293956633589059 - +chr1 111222068 111222080 ZNF24_MA1124.1 11.852601794327503 + +chr1 111222072 111222084 ZNF24_MA1124.1 12.947532688441454 + +chr1 111601140 111601152 ZNF24_MA1124.1 5.925361889387927 + +chr1 111601144 111601156 ZNF24_MA1124.1 5.820533127351530 + +chr1 113390247 113390259 ZNF24_MA1124.1 6.711677525380983 + +chr1 113759900 113759912 ZNF24_MA1124.1 7.422413581971115 - +chr1 113784208 113784220 ZNF24_MA1124.1 6.088335054969450 + +chr1 113784212 113784224 ZNF24_MA1124.1 6.357998156574945 + +chr1 113859178 113859190 ZNF24_MA1124.1 8.930389120537198 - +chr1 113859182 113859194 ZNF24_MA1124.1 14.035971653023426 - +chr1 113859186 113859198 ZNF24_MA1124.1 16.278650211435089 - +chr1 113859190 113859202 ZNF24_MA1124.1 16.278650211435089 - +chr1 113859194 113859206 ZNF24_MA1124.1 16.278650211435089 - +chr1 113859198 113859210 ZNF24_MA1124.1 14.488765164313712 - +chr1 113859299 113859311 ZNF24_MA1124.1 6.579703375801255 - +chr1 116377918 116377930 ZNF24_MA1124.1 7.155401071935337 + +chr1 116597322 116597334 ZNF24_MA1124.1 5.777849406261986 - +chr1 116738126 116738138 ZNF24_MA1124.1 6.616718172612156 + +chr1 116769436 116769448 ZNF24_MA1124.1 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143231102 ZNF24_MA1124.1 8.318694644865317 - +chr1 143232543 143232555 ZNF24_MA1124.1 5.926009217919701 - +chr1 143232845 143232857 ZNF24_MA1124.1 6.091560413504942 - +chr1 143234101 143234113 ZNF24_MA1124.1 6.091560413504942 - +chr1 143237115 143237127 ZNF24_MA1124.1 6.091560413504942 - +chr1 143238589 143238601 ZNF24_MA1124.1 5.926009217919701 - +chr1 143238891 143238903 ZNF24_MA1124.1 6.091560413504942 - +chr1 143247600 143247612 ZNF24_MA1124.1 6.091560413504942 + +chr1 143250333 143250345 ZNF24_MA1124.1 8.176913411368448 + +chr1 143250989 143251001 ZNF24_MA1124.1 6.091560413504942 + +chr1 143254126 143254138 ZNF24_MA1124.1 6.091560413504942 + +chr1 143254491 143254503 ZNF24_MA1124.1 5.787852656647104 + +chr1 143254598 143254610 ZNF24_MA1124.1 6.091560413504942 + +chr1 143254900 143254912 ZNF24_MA1124.1 6.091560413504942 + +chr1 143255896 143255908 ZNF24_MA1124.1 6.091560413504942 + +chr1 143256198 143256210 ZNF24_MA1124.1 6.091560413504942 + +chr1 143266535 143266547 ZNF24_MA1124.1 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160767770 ZNF24_MA1124.1 8.900113184641578 + +chr1 160768111 160768123 ZNF24_MA1124.1 9.785345051886717 + +chr1 161046188 161046200 ZNF24_MA1124.1 7.829019866188931 + +chr1 161133185 161133197 ZNF24_MA1124.1 7.209390730167698 + +chr1 161399360 161399372 ZNF24_MA1124.1 6.595349641212211 + +chr1 161719133 161719145 ZNF24_MA1124.1 6.293258147675092 - +chr1 161750336 161750348 ZNF24_MA1124.1 13.787511640521815 + +chr1 161750340 161750352 ZNF24_MA1124.1 13.370573302945388 + +chr1 163697338 163697350 ZNF24_MA1124.1 7.232949699294305 + +chr1 165144830 165144842 ZNF24_MA1124.1 7.782559320336629 - +chr1 165144847 165144859 ZNF24_MA1124.1 7.782559320336629 - +chr1 165144870 165144882 ZNF24_MA1124.1 5.992674273215255 - +chr1 165630745 165630757 ZNF24_MA1124.1 6.340020426006552 + +chr1 165631573 165631585 ZNF24_MA1124.1 6.285685916557254 + +chr1 165631577 165631589 ZNF24_MA1124.1 5.759425149906723 + +chr1 165857318 165857330 ZNF24_MA1124.1 8.729424449639469 + +chr1 168504245 168504257 ZNF24_MA1124.1 5.920835888321129 + +chr1 169161656 169161668 ZNF24_MA1124.1 8.973833218857525 + +chr1 169367881 169367893 ZNF24_MA1124.1 6.879774220652026 + +chr1 169693096 169693108 ZNF24_MA1124.1 10.465414025182275 + +chr1 169693100 169693112 ZNF24_MA1124.1 9.689115679568577 + +chr1 169711635 169711647 ZNF24_MA1124.1 6.873537336095002 + +chr1 169711873 169711885 ZNF24_MA1124.1 7.734612255772744 + +chr1 169795477 169795489 ZNF24_MA1124.1 6.089837157913495 + +chr1 169795481 169795493 ZNF24_MA1124.1 7.280125269825301 + +chr1 170126756 170126768 ZNF24_MA1124.1 5.916948092611845 + +chr1 170881761 170881773 ZNF24_MA1124.1 6.148972630078338 - +chr1 171251838 171251850 ZNF24_MA1124.1 8.445537769711132 + +chr1 171251842 171251854 ZNF24_MA1124.1 9.262747919505156 + +chr1 171655912 171655924 ZNF24_MA1124.1 6.117080198817136 - diff --git a/demo/known_tfbs_chr1_hg38/ZNF263_MA0528.1.bed b/demo/known_tfbs_chr1_hg38/ZNF263_MA0528.1.bed new file mode 100644 index 0000000..502f12f --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/ZNF263_MA0528.1.bed @@ -0,0 +1,7060 @@ +chr1 181577 181597 ZNF263_MA0528.1 6.518281776944750 + +chr1 181578 181598 ZNF263_MA0528.1 13.659794842079423 + +chr1 181579 181599 ZNF263_MA0528.1 9.140757144826365 + +chr1 827161 827181 ZNF263_MA0528.1 7.606728338907344 + +chr1 827420 827440 ZNF263_MA0528.1 7.932082075733601 + +chr1 827561 827581 ZNF263_MA0528.1 7.541973154607311 + +chr1 827566 827586 ZNF263_MA0528.1 9.195905051207077 + +chr1 1013622 1013642 ZNF263_MA0528.1 7.543132675824843 - +chr1 1019777 1019797 ZNF263_MA0528.1 7.239068480594496 + +chr1 1019818 1019838 ZNF263_MA0528.1 8.267739774965165 - +chr1 1019820 1019840 ZNF263_MA0528.1 8.264122749823553 - +chr1 1019825 1019845 ZNF263_MA0528.1 8.558381158873614 - +chr1 1019827 1019847 ZNF263_MA0528.1 7.399842986111857 - +chr1 1019828 1019848 ZNF263_MA0528.1 8.664531806565799 - +chr1 1019936 1019956 ZNF263_MA0528.1 6.577098276608833 + +chr1 1019942 1019962 ZNF263_MA0528.1 14.519605580549289 + +chr1 1019943 1019963 ZNF263_MA0528.1 8.038657605409552 + +chr1 1019945 1019965 ZNF263_MA0528.1 6.696455239446996 + +chr1 1019946 1019966 ZNF263_MA0528.1 11.971499134633147 + +chr1 1019949 1019969 ZNF263_MA0528.1 7.893871212121471 + +chr1 1019952 1019972 ZNF263_MA0528.1 6.557167390139515 + +chr1 1019953 1019973 ZNF263_MA0528.1 12.688667438507304 + +chr1 1019956 1019976 ZNF263_MA0528.1 8.574186901957262 + +chr1 1019957 1019977 ZNF263_MA0528.1 7.975885473203274 + +chr1 1019959 1019979 ZNF263_MA0528.1 10.407279005288956 + +chr1 1019960 1019980 ZNF263_MA0528.1 7.691712044212956 + +chr1 1019965 1019985 ZNF263_MA0528.1 6.486457528629362 + +chr1 1019966 1019986 ZNF263_MA0528.1 8.833542197296509 + +chr1 1019967 1019987 ZNF263_MA0528.1 6.418823482538121 + +chr1 1019969 1019989 ZNF263_MA0528.1 11.399217510460119 + +chr1 1019970 1019990 ZNF263_MA0528.1 12.764604863353309 + +chr1 1019973 1019993 ZNF263_MA0528.1 13.849197755293453 + +chr1 1019974 1019994 ZNF263_MA0528.1 12.873426438227385 + +chr1 1019977 1019997 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ZNF263_MA0528.1 7.931071035136688 - +chr1 1116134 1116154 ZNF263_MA0528.1 7.908625332376394 - +chr1 1157562 1157582 ZNF263_MA0528.1 10.242116907666725 + +chr1 1157565 1157585 ZNF263_MA0528.1 11.431009883240243 + +chr1 1157575 1157595 ZNF263_MA0528.1 9.656060251289796 + +chr1 1157617 1157637 ZNF263_MA0528.1 8.237506939594141 + +chr1 1157900 1157920 ZNF263_MA0528.1 6.354483437436729 + +chr1 1273724 1273744 ZNF263_MA0528.1 8.243454239921975 + +chr1 1273889 1273909 ZNF263_MA0528.1 9.686878826621383 + +chr1 1273892 1273912 ZNF263_MA0528.1 10.413004565071063 + +chr1 1273972 1273992 ZNF263_MA0528.1 7.588890336153682 + +chr1 1273975 1273995 ZNF263_MA0528.1 8.778076326201321 + +chr1 1274145 1274165 ZNF263_MA0528.1 6.897795021453563 - +chr1 1308540 1308560 ZNF263_MA0528.1 7.944952937021114 + +chr1 1308541 1308561 ZNF263_MA0528.1 10.901860235310691 + +chr1 1308547 1308567 ZNF263_MA0528.1 6.395625893533907 + +chr1 1324894 1324914 ZNF263_MA0528.1 8.181775063314131 + +chr1 1399321 1399341 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ZNF263_MA0528.1 8.083914376142756 + +chr1 2548034 2548054 ZNF263_MA0528.1 16.622059276793784 + +chr1 2548036 2548056 ZNF263_MA0528.1 6.393583298412898 + +chr1 2548037 2548057 ZNF263_MA0528.1 9.081888321317978 + +chr1 2548039 2548059 ZNF263_MA0528.1 11.940290496979650 + +chr1 2548040 2548060 ZNF263_MA0528.1 7.397155621248741 + +chr1 2548043 2548063 ZNF263_MA0528.1 8.774504803868881 + +chr1 2548251 2548271 ZNF263_MA0528.1 11.314257439474078 + +chr1 2548252 2548272 ZNF263_MA0528.1 6.399806249565547 + +chr1 2548254 2548274 ZNF263_MA0528.1 7.905268419760491 + +chr1 2548708 2548728 ZNF263_MA0528.1 6.502431281765728 + +chr1 2548907 2548927 ZNF263_MA0528.1 8.665369118317038 + +chr1 2556347 2556367 ZNF263_MA0528.1 6.625570168085356 - +chr1 2556350 2556370 ZNF263_MA0528.1 6.327491763888210 - +chr1 2556366 2556386 ZNF263_MA0528.1 6.329058705735165 - +chr1 2556549 2556569 ZNF263_MA0528.1 10.483031549768288 - +chr1 2556552 2556572 ZNF263_MA0528.1 9.922564308239187 - +chr1 2556555 2556575 ZNF263_MA0528.1 9.778611295481252 - +chr1 2578410 2578430 ZNF263_MA0528.1 10.209129504062123 - +chr1 2585555 2585575 ZNF263_MA0528.1 7.426259856241651 - +chr1 2585705 2585725 ZNF263_MA0528.1 7.158460363776165 - +chr1 2586519 2586539 ZNF263_MA0528.1 6.860769084426644 + +chr1 2586822 2586842 ZNF263_MA0528.1 7.726145113137777 + +chr1 3491458 3491478 ZNF263_MA0528.1 6.672816937030518 - +chr1 3624712 3624732 ZNF263_MA0528.1 6.613623621397007 - +chr1 3666050 3666070 ZNF263_MA0528.1 6.521568166785132 + +chr1 3666148 3666168 ZNF263_MA0528.1 7.877118857283790 + +chr1 3666150 3666170 ZNF263_MA0528.1 6.666829940663282 + +chr1 3666593 3666613 ZNF263_MA0528.1 8.082611007008159 - +chr1 3666599 3666619 ZNF263_MA0528.1 9.674989210429899 - +chr1 3666604 3666624 ZNF263_MA0528.1 6.385677812651392 - +chr1 3677123 3677143 ZNF263_MA0528.1 6.776338284462376 - +chr1 3677668 3677688 ZNF263_MA0528.1 7.547415494885122 - +chr1 3677671 3677691 ZNF263_MA0528.1 7.190735374172654 - +chr1 3772552 3772572 ZNF263_MA0528.1 11.228860548581272 - +chr1 3772555 3772575 ZNF263_MA0528.1 6.899818171970070 - +chr1 3772567 3772587 ZNF263_MA0528.1 9.316260147859406 - +chr1 3772654 3772674 ZNF263_MA0528.1 6.664165630660165 - +chr1 3900165 3900185 ZNF263_MA0528.1 10.303384581160897 - +chr1 3900325 3900345 ZNF263_MA0528.1 6.362512695599653 - +chr1 3900326 3900346 ZNF263_MA0528.1 7.797747370332569 - +chr1 3900327 3900347 ZNF263_MA0528.1 6.763246329795976 - +chr1 3900936 3900956 ZNF263_MA0528.1 7.362231953252806 - +chr1 3910963 3910983 ZNF263_MA0528.1 10.588541708530244 + +chr1 5992729 5992749 ZNF263_MA0528.1 13.097041573891262 + +chr1 5992895 5992915 ZNF263_MA0528.1 6.977915998408971 - +chr1 5992942 5992962 ZNF263_MA0528.1 6.379505375686488 - +chr1 5992943 5992963 ZNF263_MA0528.1 10.622488344411376 - +chr1 5992946 5992966 ZNF263_MA0528.1 11.191066322951547 - +chr1 5992949 5992969 ZNF263_MA0528.1 8.461509124695233 - +chr1 5992951 5992971 ZNF263_MA0528.1 8.814346506900135 - +chr1 5992957 5992977 ZNF263_MA0528.1 7.816702854577485 - +chr1 5992958 5992978 ZNF263_MA0528.1 6.365784599726798 - +chr1 5992960 5992980 ZNF263_MA0528.1 10.365569823521358 - +chr1 5992966 5992986 ZNF263_MA0528.1 6.524120311554116 - +chr1 5992967 5992987 ZNF263_MA0528.1 8.021609964119746 - +chr1 5992969 5992989 ZNF263_MA0528.1 7.741724571257062 - +chr1 5992973 5992993 ZNF263_MA0528.1 9.811817431393685 - +chr1 5992974 5992994 ZNF263_MA0528.1 6.660110044564744 - +chr1 5992981 5993001 ZNF263_MA0528.1 8.539042491597638 - +chr1 5992995 5993015 ZNF263_MA0528.1 6.956643180372524 - +chr1 5992998 5993018 ZNF263_MA0528.1 8.329218944706692 - +chr1 5993005 5993025 ZNF263_MA0528.1 8.228137994331844 - +chr1 5993077 5993097 ZNF263_MA0528.1 8.292996388633894 - +chr1 6026775 6026795 ZNF263_MA0528.1 6.362186232785636 + +chr1 6026959 6026979 ZNF263_MA0528.1 6.627730132177717 - +chr1 6026967 6026987 ZNF263_MA0528.1 6.345474912039736 - +chr1 6026968 6026988 ZNF263_MA0528.1 15.864785339685048 - +chr1 6026971 6026991 ZNF263_MA0528.1 7.196887098042421 - +chr1 6199212 6199232 ZNF263_MA0528.1 6.741094826117468 - +chr1 6199216 6199236 ZNF263_MA0528.1 14.171624743932346 - +chr1 6205542 6205562 ZNF263_MA0528.1 6.876309218155994 - +chr1 6206082 6206102 ZNF263_MA0528.1 8.522918649278203 + +chr1 6206090 6206110 ZNF263_MA0528.1 9.664885115304569 + +chr1 6206093 6206113 ZNF263_MA0528.1 7.053628667236236 + +chr1 6359436 6359456 ZNF263_MA0528.1 6.772810852132449 - +chr1 6359450 6359470 ZNF263_MA0528.1 10.454153369436066 - +chr1 6359452 6359472 ZNF263_MA0528.1 7.668518180720278 - +chr1 6359453 6359473 ZNF263_MA0528.1 13.497566486399231 - +chr1 6359456 6359476 ZNF263_MA0528.1 12.129763349733771 - +chr1 6359457 6359477 ZNF263_MA0528.1 10.297068770915498 - +chr1 6359464 6359484 ZNF263_MA0528.1 7.036204312011176 - +chr1 6359469 6359489 ZNF263_MA0528.1 11.857659814615763 - +chr1 6359523 6359543 ZNF263_MA0528.1 8.471681625950717 - +chr1 6359600 6359620 ZNF263_MA0528.1 9.040751357223243 - +chr1 6359603 6359623 ZNF263_MA0528.1 8.037144711858591 - +chr1 6393403 6393423 ZNF263_MA0528.1 9.340790409127044 + +chr1 6393505 6393525 ZNF263_MA0528.1 6.824573496905332 - +chr1 6393829 6393849 ZNF263_MA0528.1 8.250702287164293 + +chr1 6393893 6393913 ZNF263_MA0528.1 6.330332875357007 - +chr1 6394054 6394074 ZNF263_MA0528.1 8.280701180607398 + +chr1 6490147 6490167 ZNF263_MA0528.1 7.565660610213085 - +chr1 6490518 6490538 ZNF263_MA0528.1 7.270354936498721 + +chr1 6490527 6490547 ZNF263_MA0528.1 6.405242377007765 + +chr1 6490677 6490697 ZNF263_MA0528.1 8.441490828187522 + +chr1 6490768 6490788 ZNF263_MA0528.1 8.111661722663108 + +chr1 6580084 6580104 ZNF263_MA0528.1 8.154614027273075 + +chr1 6580093 6580113 ZNF263_MA0528.1 6.791003007927590 + +chr1 6580135 6580155 ZNF263_MA0528.1 7.689100884534730 + +chr1 6580138 6580158 ZNF263_MA0528.1 8.924616973903200 + +chr1 6580142 6580162 ZNF263_MA0528.1 8.954260626670624 + +chr1 6580151 6580171 ZNF263_MA0528.1 6.769756503667606 + +chr1 6602922 6602942 ZNF263_MA0528.1 7.523634158812762 + +chr1 6613258 6613278 ZNF263_MA0528.1 6.466526318712209 - +chr1 6613446 6613466 ZNF263_MA0528.1 7.649745776345547 - +chr1 6613716 6613736 ZNF263_MA0528.1 8.612839945994606 - +chr1 6614200 6614220 ZNF263_MA0528.1 10.346958850969733 - +chr1 6614202 6614222 ZNF263_MA0528.1 7.715366968209461 - +chr1 6614203 6614223 ZNF263_MA0528.1 10.417970821969194 - +chr1 6614204 6614224 ZNF263_MA0528.1 7.635857575429640 - +chr1 6614215 6614235 ZNF263_MA0528.1 6.517914768751987 - +chr1 6625153 6625173 ZNF263_MA0528.1 6.637963253110140 - +chr1 6625466 6625486 ZNF263_MA0528.1 6.358122810967968 + +chr1 6701760 6701780 ZNF263_MA0528.1 9.336238522750358 - +chr1 6784835 6784855 ZNF263_MA0528.1 6.766138550271254 - +chr1 6785239 6785259 ZNF263_MA0528.1 7.572929163633962 + +chr1 6785517 6785537 ZNF263_MA0528.1 10.153126773914851 + +chr1 6785716 6785736 ZNF263_MA0528.1 8.433009075454025 + +chr1 6785717 6785737 ZNF263_MA0528.1 6.992626343372946 + +chr1 6861863 6861883 ZNF263_MA0528.1 8.745066962698040 - +chr1 7783817 7783837 ZNF263_MA0528.1 9.514841331890830 - +chr1 7783826 7783846 ZNF263_MA0528.1 8.825780096749542 - +chr1 7783833 7783853 ZNF263_MA0528.1 11.722902028798725 - +chr1 7783836 7783856 ZNF263_MA0528.1 10.102438688363000 - +chr1 7783837 7783857 ZNF263_MA0528.1 7.491014353444859 - +chr1 7783846 7783866 ZNF263_MA0528.1 11.190055609595396 - +chr1 8026369 8026389 ZNF263_MA0528.1 9.530326567729672 - +chr1 8283170 8283190 ZNF263_MA0528.1 10.366886968545741 + +chr1 8397706 8397726 ZNF263_MA0528.1 7.124969893310497 - +chr1 8604407 8604427 ZNF263_MA0528.1 7.279442740937613 + +chr1 8604413 8604433 ZNF263_MA0528.1 8.366340727018793 + +chr1 8604431 8604451 ZNF263_MA0528.1 7.059220901209708 + +chr1 8629999 8630019 ZNF263_MA0528.1 7.629176803243604 - +chr1 8630015 8630035 ZNF263_MA0528.1 7.937542523745590 - +chr1 8764121 8764141 ZNF263_MA0528.1 6.843602984395032 - +chr1 8764128 8764148 ZNF263_MA0528.1 7.086192022149797 - +chr1 8764132 8764152 ZNF263_MA0528.1 11.544299158011421 - +chr1 8817464 8817484 ZNF263_MA0528.1 6.407344002852740 - +chr1 8817515 8817535 ZNF263_MA0528.1 10.431644050331482 + +chr1 8817528 8817548 ZNF263_MA0528.1 8.543809761641537 + +chr1 8817529 8817549 ZNF263_MA0528.1 7.369005339782343 + +chr1 8817531 8817551 ZNF263_MA0528.1 9.745450299583871 + +chr1 8817534 8817554 ZNF263_MA0528.1 7.902608626332272 + +chr1 8817585 8817605 ZNF263_MA0528.1 6.352366931590391 + +chr1 8817797 8817817 ZNF263_MA0528.1 8.698832953517611 + +chr1 8817876 8817896 ZNF263_MA0528.1 8.843931993989449 + +chr1 8878128 8878148 ZNF263_MA0528.1 9.258290436516164 - +chr1 8878729 8878749 ZNF263_MA0528.1 8.992453389789464 - +chr1 8879148 8879168 ZNF263_MA0528.1 8.158166320714114 - +chr1 9037447 9037467 ZNF263_MA0528.1 10.168758904141184 + +chr1 9037611 9037631 ZNF263_MA0528.1 6.666045194566820 - +chr1 9037614 9037634 ZNF263_MA0528.1 7.789634546362747 - +chr1 9069500 9069520 ZNF263_MA0528.1 9.145419412262612 - +chr1 9069505 9069525 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26318057 ZNF263_MA0528.1 8.328419463094166 - +chr1 26432394 26432414 ZNF263_MA0528.1 6.358578886696597 + +chr1 26472261 26472281 ZNF263_MA0528.1 7.716972573401241 - +chr1 26472339 26472359 ZNF263_MA0528.1 6.527834454363317 - +chr1 26472343 26472363 ZNF263_MA0528.1 6.362742563249653 - +chr1 26472346 26472366 ZNF263_MA0528.1 10.536945194632827 - +chr1 26472349 26472369 ZNF263_MA0528.1 7.686486821885165 - +chr1 26472353 26472373 ZNF263_MA0528.1 9.678645417514701 - +chr1 26472897 26472917 ZNF263_MA0528.1 8.269583089108430 - +chr1 26472927 26472947 ZNF263_MA0528.1 8.967458090341545 - +chr1 26500771 26500791 ZNF263_MA0528.1 9.667768032024460 + +chr1 26500855 26500875 ZNF263_MA0528.1 11.556594589438633 - +chr1 26501099 26501119 ZNF263_MA0528.1 7.267818204098280 + +chr1 26541924 26541944 ZNF263_MA0528.1 10.237245258196527 + +chr1 26541996 26542016 ZNF263_MA0528.1 7.295326589539070 - +chr1 26542278 26542298 ZNF263_MA0528.1 6.577420517674419 + +chr1 26542360 26542380 ZNF263_MA0528.1 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26787760 ZNF263_MA0528.1 8.786540662895549 + +chr1 26788163 26788183 ZNF263_MA0528.1 9.625885332984680 - +chr1 26788179 26788199 ZNF263_MA0528.1 8.452450234755402 - +chr1 26826511 26826531 ZNF263_MA0528.1 7.703942821899947 + +chr1 26826521 26826541 ZNF263_MA0528.1 6.722695859210550 + +chr1 26864753 26864773 ZNF263_MA0528.1 6.634217137548687 + +chr1 26864963 26864983 ZNF263_MA0528.1 6.417880063224433 + +chr1 26864995 26865015 ZNF263_MA0528.1 7.076723358611472 + +chr1 26864996 26865016 ZNF263_MA0528.1 7.217306369771296 + +chr1 26864999 26865019 ZNF263_MA0528.1 8.990839758377559 + +chr1 26865871 26865891 ZNF263_MA0528.1 7.305420423218899 + +chr1 26921671 26921691 ZNF263_MA0528.1 12.666670592669975 + +chr1 26921672 26921692 ZNF263_MA0528.1 9.837444843782480 + +chr1 26921675 26921695 ZNF263_MA0528.1 10.962891541201163 + +chr1 26921977 26921997 ZNF263_MA0528.1 7.296955467662706 - +chr1 27234659 27234679 ZNF263_MA0528.1 7.746909971716949 + +chr1 27234672 27234692 ZNF263_MA0528.1 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27772816 ZNF263_MA0528.1 8.522612990682328 + +chr1 27772797 27772817 ZNF263_MA0528.1 7.599841991217219 + +chr1 27773029 27773049 ZNF263_MA0528.1 6.488308952812699 - +chr1 27773033 27773053 ZNF263_MA0528.1 8.775008125184002 - +chr1 27773197 27773217 ZNF263_MA0528.1 7.499357759885109 - +chr1 27773200 27773220 ZNF263_MA0528.1 9.699764522623891 - +chr1 27830584 27830604 ZNF263_MA0528.1 8.087830373860875 - +chr1 27830766 27830786 ZNF263_MA0528.1 6.714332604292489 - +chr1 27872897 27872917 ZNF263_MA0528.1 8.487177894424761 + +chr1 27914645 27914665 ZNF263_MA0528.1 6.960638808815068 - +chr1 27959981 27960001 ZNF263_MA0528.1 8.971680189522292 - +chr1 27960040 27960060 ZNF263_MA0528.1 12.381961761679884 + +chr1 28088370 28088390 ZNF263_MA0528.1 7.158695355883181 + +chr1 28088950 28088970 ZNF263_MA0528.1 7.691108299605066 + +chr1 28088953 28088973 ZNF263_MA0528.1 9.215610691767621 + +chr1 28199501 28199521 ZNF263_MA0528.1 9.887760864707174 - +chr1 28199508 28199528 ZNF263_MA0528.1 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28552661 ZNF263_MA0528.1 7.665817997404655 - +chr1 28553199 28553219 ZNF263_MA0528.1 7.053681069773905 + +chr1 28581798 28581818 ZNF263_MA0528.1 6.431688466814153 + +chr1 28581854 28581874 ZNF263_MA0528.1 7.126490983175582 + +chr1 28642718 28642738 ZNF263_MA0528.1 9.603924139923135 - +chr1 28642946 28642966 ZNF263_MA0528.1 9.966744202792020 - +chr1 28642949 28642969 ZNF263_MA0528.1 11.054530831594477 - +chr1 28643311 28643331 ZNF263_MA0528.1 6.335917444855848 - +chr1 28648323 28648343 ZNF263_MA0528.1 6.542994169190527 - +chr1 28668832 28668852 ZNF263_MA0528.1 6.369956565283657 + +chr1 28668833 28668853 ZNF263_MA0528.1 7.586925202847846 + +chr1 28668838 28668858 ZNF263_MA0528.1 8.844565508916432 + +chr1 28668841 28668861 ZNF263_MA0528.1 11.479565528023572 + +chr1 28668876 28668896 ZNF263_MA0528.1 6.779944889544644 + +chr1 28669329 28669349 ZNF263_MA0528.1 8.816593317786760 + +chr1 28669552 28669572 ZNF263_MA0528.1 9.639087888884800 + +chr1 28669553 28669573 ZNF263_MA0528.1 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28914351 ZNF263_MA0528.1 7.725470009416034 - +chr1 28914344 28914364 ZNF263_MA0528.1 8.640449426378829 - +chr1 28914345 28914365 ZNF263_MA0528.1 6.826659624530842 - +chr1 28914350 28914370 ZNF263_MA0528.1 6.386467247002130 - +chr1 28914352 28914372 ZNF263_MA0528.1 9.361582006958740 - +chr1 28914357 28914377 ZNF263_MA0528.1 8.646375586074381 - +chr1 28914388 28914408 ZNF263_MA0528.1 7.205745472502681 + +chr1 29181570 29181590 ZNF263_MA0528.1 7.936038161113782 - +chr1 29181624 29181644 ZNF263_MA0528.1 7.699915720931002 - +chr1 29181627 29181647 ZNF263_MA0528.1 9.697474481490017 - +chr1 29181916 29181936 ZNF263_MA0528.1 7.276814131353385 - +chr1 29181920 29181940 ZNF263_MA0528.1 8.306610885720334 - +chr1 30718503 30718523 ZNF263_MA0528.1 8.654011229366061 - +chr1 30718518 30718538 ZNF263_MA0528.1 11.260095247603944 - +chr1 30718562 30718582 ZNF263_MA0528.1 7.250531463803965 - +chr1 30718568 30718588 ZNF263_MA0528.1 8.863287731506487 - +chr1 30718591 30718611 ZNF263_MA0528.1 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31297103 ZNF263_MA0528.1 7.835259627793889 + +chr1 31297084 31297104 ZNF263_MA0528.1 6.959271871351898 + +chr1 31483327 31483347 ZNF263_MA0528.1 8.569872016399483 - +chr1 31549355 31549375 ZNF263_MA0528.1 9.522129697541752 + +chr1 31549475 31549495 ZNF263_MA0528.1 7.161739379826503 + +chr1 31549479 31549499 ZNF263_MA0528.1 6.690102111874531 + +chr1 31549494 31549514 ZNF263_MA0528.1 8.469421067916361 + +chr1 31644753 31644773 ZNF263_MA0528.1 8.497032980882095 + +chr1 31644761 31644781 ZNF263_MA0528.1 10.263251114079811 + +chr1 31644764 31644784 ZNF263_MA0528.1 6.712768355889743 + +chr1 31645120 31645140 ZNF263_MA0528.1 6.408095816112432 + +chr1 31788752 31788772 ZNF263_MA0528.1 6.478510718175887 + +chr1 31788790 31788810 ZNF263_MA0528.1 10.235054056803147 + +chr1 31788793 31788813 ZNF263_MA0528.1 11.615341607487947 + +chr1 31789229 31789249 ZNF263_MA0528.1 11.843066738251396 - +chr1 31789235 31789255 ZNF263_MA0528.1 6.930506401925351 - +chr1 31789264 31789284 ZNF263_MA0528.1 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32351363 ZNF263_MA0528.1 7.879656065628881 + +chr1 32351460 32351480 ZNF263_MA0528.1 7.496424563350762 - +chr1 32351473 32351493 ZNF263_MA0528.1 7.196672627495396 - +chr1 32394749 32394769 ZNF263_MA0528.1 7.914611476010312 + +chr1 32394756 32394776 ZNF263_MA0528.1 12.249094276803136 + +chr1 32394763 32394783 ZNF263_MA0528.1 6.874123344065584 + +chr1 32520768 32520788 ZNF263_MA0528.1 6.772721600759628 - +chr1 32650510 32650530 ZNF263_MA0528.1 6.442257481565816 - +chr1 32650547 32650567 ZNF263_MA0528.1 7.777708222815951 - +chr1 32650550 32650570 ZNF263_MA0528.1 9.085363203537042 - +chr1 32650821 32650841 ZNF263_MA0528.1 8.816825914681075 - +chr1 32651034 32651054 ZNF263_MA0528.1 10.081300416883147 + +chr1 32651037 32651057 ZNF263_MA0528.1 10.175785093600981 + +chr1 32817602 32817622 ZNF263_MA0528.1 10.270561422273994 + +chr1 32817686 32817706 ZNF263_MA0528.1 8.785744923582614 + +chr1 32992382 32992402 ZNF263_MA0528.1 7.244348092786714 - +chr1 32992939 32992959 ZNF263_MA0528.1 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33903157 ZNF263_MA0528.1 6.466131540830339 + +chr1 34530457 34530477 ZNF263_MA0528.1 6.926312760143926 - +chr1 34530687 34530707 ZNF263_MA0528.1 9.097573367622340 + +chr1 34530696 34530716 ZNF263_MA0528.1 6.832071466955405 + +chr1 34530699 34530719 ZNF263_MA0528.1 6.813413588075136 + +chr1 35031837 35031857 ZNF263_MA0528.1 9.276161324686472 + +chr1 35031965 35031985 ZNF263_MA0528.1 6.929033066774111 - +chr1 35079246 35079266 ZNF263_MA0528.1 11.617408752169338 - +chr1 35079249 35079269 ZNF263_MA0528.1 7.019634776615712 - +chr1 35079252 35079272 ZNF263_MA0528.1 10.353706080127129 - +chr1 35079254 35079274 ZNF263_MA0528.1 10.572019969273692 - +chr1 35079255 35079275 ZNF263_MA0528.1 9.102211567745378 - +chr1 35079258 35079278 ZNF263_MA0528.1 7.760369090583834 - +chr1 35079350 35079370 ZNF263_MA0528.1 7.404198475790968 + +chr1 35079693 35079713 ZNF263_MA0528.1 8.027908503597654 - +chr1 35192152 35192172 ZNF263_MA0528.1 9.140362136784953 + +chr1 35193294 35193314 ZNF263_MA0528.1 8.605541032336239 + +chr1 35268654 35268674 ZNF263_MA0528.1 6.974165304052001 + +chr1 35557139 35557159 ZNF263_MA0528.1 7.520894314486894 - +chr1 35557306 35557326 ZNF263_MA0528.1 18.726053358184611 + +chr1 35557309 35557329 ZNF263_MA0528.1 18.360648041770087 + +chr1 35557312 35557332 ZNF263_MA0528.1 17.706727496366479 + +chr1 35557315 35557335 ZNF263_MA0528.1 12.274704586609213 + +chr1 35557318 35557338 ZNF263_MA0528.1 6.895399178316461 + +chr1 35557460 35557480 ZNF263_MA0528.1 6.970556669930252 - +chr1 35557510 35557530 ZNF263_MA0528.1 6.858353063083085 + +chr1 35770143 35770163 ZNF263_MA0528.1 6.484927086886437 + +chr1 35883601 35883621 ZNF263_MA0528.1 6.848438669675576 + +chr1 35930670 35930690 ZNF263_MA0528.1 6.769696532971330 + +chr1 35930673 35930693 ZNF263_MA0528.1 7.791971379276292 + +chr1 35930962 35930982 ZNF263_MA0528.1 6.635884257796843 - +chr1 35931201 35931221 ZNF263_MA0528.1 9.436237804818880 - +chr1 35931395 35931415 ZNF263_MA0528.1 6.782225083261162 - +chr1 35931493 35931513 ZNF263_MA0528.1 6.548705572977948 - +chr1 36089139 36089159 ZNF263_MA0528.1 6.543636643233265 + +chr1 36089195 36089215 ZNF263_MA0528.1 7.560799030346439 + +chr1 36149742 36149762 ZNF263_MA0528.1 8.621281964118884 - +chr1 36149745 36149765 ZNF263_MA0528.1 14.434462159449508 - +chr1 36149758 36149778 ZNF263_MA0528.1 6.581335478503595 - +chr1 36224183 36224203 ZNF263_MA0528.1 8.057947561052625 - +chr1 36224664 36224684 ZNF263_MA0528.1 8.294800166494198 - +chr1 36224667 36224687 ZNF263_MA0528.1 6.442974157097348 - +chr1 36224675 36224695 ZNF263_MA0528.1 7.961554772096322 - +chr1 36224676 36224696 ZNF263_MA0528.1 7.248366262437939 - +chr1 36224871 36224891 ZNF263_MA0528.1 7.209446116233195 - +chr1 36224872 36224892 ZNF263_MA0528.1 6.595482735631075 - +chr1 36374018 36374038 ZNF263_MA0528.1 6.585610246116167 - +chr1 36374212 36374232 ZNF263_MA0528.1 11.360133418358371 - +chr1 36385934 36385954 ZNF263_MA0528.1 10.716428073203899 - +chr1 36386560 36386580 ZNF263_MA0528.1 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37474750 ZNF263_MA0528.1 8.300367380506133 + +chr1 37474731 37474751 ZNF263_MA0528.1 6.668451160923627 + +chr1 37474732 37474752 ZNF263_MA0528.1 10.895648391389761 + +chr1 37474735 37474755 ZNF263_MA0528.1 10.012713338030126 + +chr1 37474742 37474762 ZNF263_MA0528.1 6.818949947765966 + +chr1 37514264 37514284 ZNF263_MA0528.1 6.977452020711545 - +chr1 37514267 37514287 ZNF263_MA0528.1 9.625692387393583 - +chr1 37514270 37514290 ZNF263_MA0528.1 6.341503690024862 - +chr1 37514279 37514299 ZNF263_MA0528.1 8.484739184007118 - +chr1 37514282 37514302 ZNF263_MA0528.1 10.840719126734511 - +chr1 37514389 37514409 ZNF263_MA0528.1 7.030478351442992 - +chr1 37514392 37514412 ZNF263_MA0528.1 8.690778706770196 - +chr1 37514428 37514448 ZNF263_MA0528.1 8.482838248993199 - +chr1 37514434 37514454 ZNF263_MA0528.1 7.397730944403581 - +chr1 37514652 37514672 ZNF263_MA0528.1 7.799640426034736 - +chr1 37554211 37554231 ZNF263_MA0528.1 6.728544657167681 - +chr1 37595678 37595698 ZNF263_MA0528.1 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38028421 ZNF263_MA0528.1 9.801467373001158 + +chr1 38046890 38046910 ZNF263_MA0528.1 6.879871543131852 - +chr1 38475310 38475330 ZNF263_MA0528.1 9.444694448434193 + +chr1 38475313 38475333 ZNF263_MA0528.1 8.297853613388245 + +chr1 38859494 38859514 ZNF263_MA0528.1 7.454613210988782 - +chr1 38859537 38859557 ZNF263_MA0528.1 16.815090639563426 - +chr1 38859540 38859560 ZNF263_MA0528.1 12.958780877537384 - +chr1 38859705 38859725 ZNF263_MA0528.1 7.493195575015712 - +chr1 38859902 38859922 ZNF263_MA0528.1 8.836341921333167 + +chr1 38859917 38859937 ZNF263_MA0528.1 10.500792714367213 + +chr1 38859920 38859940 ZNF263_MA0528.1 6.975541514260131 + +chr1 38873532 38873552 ZNF263_MA0528.1 9.770589182133840 - +chr1 38990962 38990982 ZNF263_MA0528.1 7.419909687166525 - +chr1 38991064 38991084 ZNF263_MA0528.1 8.748516056691722 + +chr1 38991190 38991210 ZNF263_MA0528.1 6.546787340731378 - +chr1 38991652 38991672 ZNF263_MA0528.1 7.669469495045415 + +chr1 38991655 38991675 ZNF263_MA0528.1 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39606627 ZNF263_MA0528.1 6.502431281765728 + +chr1 39667119 39667139 ZNF263_MA0528.1 9.194106691921581 - +chr1 39799820 39799840 ZNF263_MA0528.1 8.549492024436036 - +chr1 39902202 39902222 ZNF263_MA0528.1 8.690733653297768 + +chr1 39955405 39955425 ZNF263_MA0528.1 9.834206611458546 + +chr1 39955408 39955428 ZNF263_MA0528.1 10.005476992925962 + +chr1 39955409 39955429 ZNF263_MA0528.1 7.887440701844648 + +chr1 39955420 39955440 ZNF263_MA0528.1 10.550783214647664 + +chr1 39955423 39955443 ZNF263_MA0528.1 14.010625919674368 + +chr1 39955426 39955446 ZNF263_MA0528.1 7.823401196111342 + +chr1 39955536 39955556 ZNF263_MA0528.1 7.096067027327713 + +chr1 39955747 39955767 ZNF263_MA0528.1 7.596492194747213 - +chr1 39955756 39955776 ZNF263_MA0528.1 11.580389599963780 - +chr1 39955775 39955795 ZNF263_MA0528.1 6.817365210437881 - +chr1 39996065 39996085 ZNF263_MA0528.1 9.109983260346887 + +chr1 40161395 40161415 ZNF263_MA0528.1 7.396279507787717 + +chr1 40161399 40161419 ZNF263_MA0528.1 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40374673 ZNF263_MA0528.1 12.966558665569513 + +chr1 40374656 40374676 ZNF263_MA0528.1 10.639382516270160 + +chr1 40386113 40386133 ZNF263_MA0528.1 7.508283229909162 + +chr1 40450168 40450188 ZNF263_MA0528.1 6.547265772732979 + +chr1 40450203 40450223 ZNF263_MA0528.1 7.049018302869915 + +chr1 40450353 40450373 ZNF263_MA0528.1 9.084032014827164 + +chr1 40531807 40531827 ZNF263_MA0528.1 6.903624290763023 + +chr1 40628541 40628561 ZNF263_MA0528.1 8.571319871712161 + +chr1 40665557 40665577 ZNF263_MA0528.1 7.546057613872437 + +chr1 40665907 40665927 ZNF263_MA0528.1 9.305336725137044 - +chr1 40691673 40691693 ZNF263_MA0528.1 11.359955810961813 + +chr1 40691676 40691696 ZNF263_MA0528.1 10.053225612599512 + +chr1 40691677 40691697 ZNF263_MA0528.1 6.859980564587016 + +chr1 40691679 40691699 ZNF263_MA0528.1 10.985868914319079 + +chr1 40691680 40691700 ZNF263_MA0528.1 9.181430792687372 + +chr1 40691905 40691925 ZNF263_MA0528.1 7.018251013272568 + +chr1 40691907 40691927 ZNF263_MA0528.1 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41728488 ZNF263_MA0528.1 11.357192522847894 + +chr1 41728474 41728494 ZNF263_MA0528.1 11.854271743796094 + +chr1 41751266 41751286 ZNF263_MA0528.1 7.001738733438197 - +chr1 41751272 41751292 ZNF263_MA0528.1 7.917332069640077 - +chr1 41751359 41751379 ZNF263_MA0528.1 6.605425559366576 + +chr1 41751514 41751534 ZNF263_MA0528.1 10.597496540234053 + +chr1 41751517 41751537 ZNF263_MA0528.1 8.393457691321503 + +chr1 41751520 41751540 ZNF263_MA0528.1 6.923627181161832 + +chr1 41751522 41751542 ZNF263_MA0528.1 8.977309872514390 + +chr1 41751525 41751545 ZNF263_MA0528.1 7.798139996087878 + +chr1 41751605 41751625 ZNF263_MA0528.1 7.900720984928297 - +chr1 41751608 41751628 ZNF263_MA0528.1 8.188814812695464 - +chr1 41751980 41752000 ZNF263_MA0528.1 7.822677584100836 - +chr1 41751983 41752003 ZNF263_MA0528.1 7.292591343378358 - +chr1 41752081 41752101 ZNF263_MA0528.1 9.318292229900333 - +chr1 41920116 41920136 ZNF263_MA0528.1 7.553638226533046 - +chr1 41920122 41920142 ZNF263_MA0528.1 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42682625 ZNF263_MA0528.1 8.770513043735285 - +chr1 42682852 42682872 ZNF263_MA0528.1 10.384537639662168 - +chr1 42682855 42682875 ZNF263_MA0528.1 6.445609190696250 - +chr1 42682860 42682880 ZNF263_MA0528.1 10.980818763508847 - +chr1 42682864 42682884 ZNF263_MA0528.1 9.714289734841536 - +chr1 42683057 42683077 ZNF263_MA0528.1 6.351670864230595 - +chr1 42817111 42817131 ZNF263_MA0528.1 7.001230234709427 - +chr1 42846936 42846956 ZNF263_MA0528.1 14.279464126133973 - +chr1 42846939 42846959 ZNF263_MA0528.1 7.109225759977956 - +chr1 42958062 42958082 ZNF263_MA0528.1 7.839052543289936 + +chr1 42958077 42958097 ZNF263_MA0528.1 6.385131788564395 + +chr1 42958999 42959019 ZNF263_MA0528.1 8.405776901840404 + +chr1 43172011 43172031 ZNF263_MA0528.1 8.228606859629350 - +chr1 43172441 43172461 ZNF263_MA0528.1 7.052844521068653 + +chr1 43172507 43172527 ZNF263_MA0528.1 7.203916717236196 + +chr1 43172523 43172543 ZNF263_MA0528.1 7.026058578325728 + +chr1 43172550 43172570 ZNF263_MA0528.1 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43172638 43172658 ZNF263_MA0528.1 12.639490324066758 + +chr1 43172641 43172661 ZNF263_MA0528.1 6.687556434729587 + +chr1 43358456 43358476 ZNF263_MA0528.1 6.358434004201531 - +chr1 43367639 43367659 ZNF263_MA0528.1 14.903316353061840 + +chr1 43367640 43367660 ZNF263_MA0528.1 6.734049065396020 + +chr1 43367642 43367662 ZNF263_MA0528.1 7.530938160770571 + +chr1 43367643 43367663 ZNF263_MA0528.1 12.712491767560655 + +chr1 43367644 43367664 ZNF263_MA0528.1 7.570109071482918 + +chr1 43367646 43367666 ZNF263_MA0528.1 7.607020991881107 + +chr1 43367647 43367667 ZNF263_MA0528.1 8.807170842146240 + +chr1 43367648 43367668 ZNF263_MA0528.1 10.901071054625616 + +chr1 43367650 43367670 ZNF263_MA0528.1 12.372706651251422 + +chr1 43367653 43367673 ZNF263_MA0528.1 13.090202448428505 + +chr1 43367656 43367676 ZNF263_MA0528.1 11.318917278140464 + +chr1 43367727 43367747 ZNF263_MA0528.1 10.828926302231407 + +chr1 43367729 43367749 ZNF263_MA0528.1 7.677251838195511 + +chr1 43367950 43367970 ZNF263_MA0528.1 8.813486093589763 + +chr1 43367953 43367973 ZNF263_MA0528.1 8.776192303872831 + +chr1 43389986 43390006 ZNF263_MA0528.1 7.327916613247858 + +chr1 43650321 43650341 ZNF263_MA0528.1 9.106102599539188 + +chr1 43707627 43707647 ZNF263_MA0528.1 6.810520510512005 - +chr1 43707661 43707681 ZNF263_MA0528.1 6.708888885625644 - +chr1 43707664 43707684 ZNF263_MA0528.1 10.055483488462393 - +chr1 43836654 43836674 ZNF263_MA0528.1 8.871765053727563 + +chr1 43836657 43836677 ZNF263_MA0528.1 6.952671409519185 + +chr1 43836660 43836680 ZNF263_MA0528.1 10.384147823955660 + +chr1 43946441 43946461 ZNF263_MA0528.1 7.386044575761998 - +chr1 43946444 43946464 ZNF263_MA0528.1 7.734488760729003 - +chr1 43974607 43974627 ZNF263_MA0528.1 8.574227499734080 + +chr1 43974732 43974752 ZNF263_MA0528.1 7.063752283234351 + +chr1 44029915 44029935 ZNF263_MA0528.1 8.396663303456512 - +chr1 44030076 44030096 ZNF263_MA0528.1 6.381763395975747 + +chr1 44030559 44030579 ZNF263_MA0528.1 7.910841698208197 + 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46247506 ZNF263_MA0528.1 10.580785361968870 - +chr1 46247779 46247799 ZNF263_MA0528.1 6.770258202049266 + +chr1 46302294 46302314 ZNF263_MA0528.1 6.624217258401680 - +chr1 46302543 46302563 ZNF263_MA0528.1 7.307016039284387 - +chr1 46302544 46302564 ZNF263_MA0528.1 7.089363729199995 - +chr1 46303814 46303834 ZNF263_MA0528.1 7.001050408071118 + +chr1 46326025 46326045 ZNF263_MA0528.1 7.123315281231735 - +chr1 46326026 46326046 ZNF263_MA0528.1 8.282290953642770 - +chr1 46326027 46326047 ZNF263_MA0528.1 8.185465712423806 - +chr1 46326031 46326051 ZNF263_MA0528.1 6.519944263693770 - +chr1 46340933 46340953 ZNF263_MA0528.1 7.634356461844199 + +chr1 46340943 46340963 ZNF263_MA0528.1 6.363350811801793 + +chr1 46341044 46341064 ZNF263_MA0528.1 6.698398104571758 - +chr1 46442703 46442723 ZNF263_MA0528.1 7.546140123842003 - +chr1 46604391 46604411 ZNF263_MA0528.1 6.568449890618587 + +chr1 46604392 46604412 ZNF263_MA0528.1 8.071375186055617 + +chr1 46604394 46604414 ZNF263_MA0528.1 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47333881 ZNF263_MA0528.1 10.826322790163582 - +chr1 47333864 47333884 ZNF263_MA0528.1 7.082694259168867 - +chr1 47334553 47334573 ZNF263_MA0528.1 8.969099397871000 - +chr1 47436686 47436706 ZNF263_MA0528.1 7.980956674020971 - +chr1 47436759 47436779 ZNF263_MA0528.1 10.791942086600370 + +chr1 47436762 47436782 ZNF263_MA0528.1 9.440820208732644 + +chr1 47436763 47436783 ZNF263_MA0528.1 8.071855984029975 + +chr1 47436906 47436926 ZNF263_MA0528.1 7.809814063656854 + +chr1 47437000 47437020 ZNF263_MA0528.1 8.189048668139909 + +chr1 47437005 47437025 ZNF263_MA0528.1 7.117129196319503 + +chr1 47437007 47437027 ZNF263_MA0528.1 6.835834480224417 + +chr1 47437012 47437032 ZNF263_MA0528.1 6.969160032631612 + +chr1 47437476 47437496 ZNF263_MA0528.1 7.798186736907662 + +chr1 47437581 47437601 ZNF263_MA0528.1 6.494219534099454 + +chr1 47437996 47438016 ZNF263_MA0528.1 7.009304354773329 - +chr1 47997594 47997614 ZNF263_MA0528.1 8.006424434463908 - +chr1 47997606 47997626 ZNF263_MA0528.1 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48236870 ZNF263_MA0528.1 7.360690875217902 + +chr1 48236859 48236879 ZNF263_MA0528.1 10.475400414150586 + +chr1 48236915 48236935 ZNF263_MA0528.1 7.419388416784823 + +chr1 48236927 48236947 ZNF263_MA0528.1 11.163587659474741 + +chr1 48236928 48236948 ZNF263_MA0528.1 6.744758409927050 + +chr1 48472014 48472034 ZNF263_MA0528.1 6.924226271415801 + +chr1 48472215 48472235 ZNF263_MA0528.1 6.543160177903260 + +chr1 48498498 48498518 ZNF263_MA0528.1 6.894685271561539 - +chr1 48498546 48498566 ZNF263_MA0528.1 6.662967611193465 - +chr1 48730495 48730515 ZNF263_MA0528.1 9.933979043871016 + +chr1 48730505 48730525 ZNF263_MA0528.1 9.398290064464296 + +chr1 48730508 48730528 ZNF263_MA0528.1 8.701940195791636 + +chr1 48730560 48730580 ZNF263_MA0528.1 7.729567479266137 + +chr1 48730562 48730582 ZNF263_MA0528.1 6.645103439530832 + +chr1 48730572 48730592 ZNF263_MA0528.1 7.916366942980902 + +chr1 48730575 48730595 ZNF263_MA0528.1 6.537216970321515 + +chr1 48730579 48730599 ZNF263_MA0528.1 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50968904 ZNF263_MA0528.1 7.050783448459571 + +chr1 50969411 50969431 ZNF263_MA0528.1 9.429695091051670 - +chr1 50977357 50977377 ZNF263_MA0528.1 8.636041807568285 - +chr1 50977370 50977390 ZNF263_MA0528.1 6.637974171358683 - +chr1 50977456 50977476 ZNF263_MA0528.1 6.488152531756535 + +chr1 50977519 50977539 ZNF263_MA0528.1 6.851253287930556 - +chr1 50978060 50978080 ZNF263_MA0528.1 9.572320019919101 + +chr1 50978066 50978086 ZNF263_MA0528.1 7.986211683750126 + +chr1 50978067 50978087 ZNF263_MA0528.1 8.197827287981307 + +chr1 50978074 50978094 ZNF263_MA0528.1 7.538561863006349 + +chr1 51235413 51235433 ZNF263_MA0528.1 6.516137531264693 + +chr1 51235420 51235440 ZNF263_MA0528.1 6.440741717718028 + +chr1 51235927 51235947 ZNF263_MA0528.1 6.543278336629879 + +chr1 51236091 51236111 ZNF263_MA0528.1 10.163507639373565 + +chr1 51236313 51236333 ZNF263_MA0528.1 8.856270906691103 + +chr1 51268489 51268509 ZNF263_MA0528.1 6.453071128623097 - +chr1 51491327 51491347 ZNF263_MA0528.1 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56045597 ZNF263_MA0528.1 7.640086832948802 + +chr1 56135417 56135437 ZNF263_MA0528.1 8.260118640978622 - +chr1 56296333 56296353 ZNF263_MA0528.1 6.349023904400978 + +chr1 56296336 56296356 ZNF263_MA0528.1 8.788088628805223 + +chr1 56296339 56296359 ZNF263_MA0528.1 8.043041567232567 + +chr1 56330599 56330619 ZNF263_MA0528.1 7.913207462889871 - +chr1 56330611 56330631 ZNF263_MA0528.1 6.407042070688821 - +chr1 56578831 56578851 ZNF263_MA0528.1 9.213722906240468 + +chr1 56579456 56579476 ZNF263_MA0528.1 10.222758477350483 - +chr1 56579459 56579479 ZNF263_MA0528.1 10.601194808202189 - +chr1 56579465 56579485 ZNF263_MA0528.1 17.572364576672165 - +chr1 56579468 56579488 ZNF263_MA0528.1 19.652908022716392 - +chr1 56579474 56579494 ZNF263_MA0528.1 14.455129243401002 - +chr1 56579477 56579497 ZNF263_MA0528.1 15.444414431742425 - +chr1 56579483 56579503 ZNF263_MA0528.1 13.840130616479552 - +chr1 56579593 56579613 ZNF263_MA0528.1 8.158070842905092 + +chr1 56579595 56579615 ZNF263_MA0528.1 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58546247 ZNF263_MA0528.1 6.769767867688122 + +chr1 58546230 58546250 ZNF263_MA0528.1 8.789216787757772 + +chr1 58546352 58546372 ZNF263_MA0528.1 7.440136659566661 + +chr1 58546356 58546376 ZNF263_MA0528.1 6.687414657833213 + +chr1 58546529 58546549 ZNF263_MA0528.1 10.090967792383760 - +chr1 58546544 58546564 ZNF263_MA0528.1 7.821809633063476 - +chr1 58546545 58546565 ZNF263_MA0528.1 8.222062812756244 - +chr1 58546629 58546649 ZNF263_MA0528.1 6.486224238414430 - +chr1 58546792 58546812 ZNF263_MA0528.1 6.422635921575988 - +chr1 58573487 58573507 ZNF263_MA0528.1 6.971890656968445 + +chr1 58573490 58573510 ZNF263_MA0528.1 7.596953968398877 + +chr1 58574054 58574074 ZNF263_MA0528.1 7.898563385847129 - +chr1 58574291 58574311 ZNF263_MA0528.1 8.808186200602004 + +chr1 58699674 58699694 ZNF263_MA0528.1 7.538404803420264 + +chr1 58699677 58699697 ZNF263_MA0528.1 11.404745393425131 + +chr1 58699881 58699901 ZNF263_MA0528.1 6.810614063136187 - +chr1 58699939 58699959 ZNF263_MA0528.1 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60391477 ZNF263_MA0528.1 7.270264287808008 + +chr1 60391461 60391481 ZNF263_MA0528.1 7.231952532218676 + +chr1 60978758 60978778 ZNF263_MA0528.1 6.695837534443662 + +chr1 61050196 61050216 ZNF263_MA0528.1 7.518726504936134 - +chr1 61050199 61050219 ZNF263_MA0528.1 7.796710646022333 - +chr1 61050208 61050228 ZNF263_MA0528.1 8.834532181223421 - +chr1 61050216 61050236 ZNF263_MA0528.1 7.215197834698756 - +chr1 61050217 61050237 ZNF263_MA0528.1 7.644141267080652 - +chr1 61050225 61050245 ZNF263_MA0528.1 8.447958189164924 - +chr1 61050226 61050246 ZNF263_MA0528.1 7.809620243134146 - +chr1 61077094 61077114 ZNF263_MA0528.1 13.055314383337231 + +chr1 61077119 61077139 ZNF263_MA0528.1 6.856773173893514 - +chr1 61077127 61077147 ZNF263_MA0528.1 7.094873577912788 - +chr1 61077215 61077235 ZNF263_MA0528.1 8.911569943577701 + +chr1 61077218 61077238 ZNF263_MA0528.1 7.957858787042445 + +chr1 61077386 61077406 ZNF263_MA0528.1 6.344540997423993 + +chr1 61588901 61588921 ZNF263_MA0528.1 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64745053 ZNF263_MA0528.1 6.879175135761434 - +chr1 64745088 64745108 ZNF263_MA0528.1 8.003867441556473 - +chr1 64745101 64745121 ZNF263_MA0528.1 6.807203210676591 - +chr1 64745110 64745130 ZNF263_MA0528.1 7.528603778985364 - +chr1 64745111 64745131 ZNF263_MA0528.1 8.826338426120445 - +chr1 64898531 64898551 ZNF263_MA0528.1 6.428777835502714 - +chr1 64956653 64956673 ZNF263_MA0528.1 8.608834479827856 - +chr1 64956725 64956745 ZNF263_MA0528.1 6.352049051075804 + +chr1 64956730 64956750 ZNF263_MA0528.1 8.919471177408585 + +chr1 64956733 64956753 ZNF263_MA0528.1 8.173119237899716 + +chr1 64956857 64956877 ZNF263_MA0528.1 13.752499422836207 + +chr1 64956860 64956880 ZNF263_MA0528.1 13.259632829509139 + +chr1 64956863 64956883 ZNF263_MA0528.1 13.307274143142118 + +chr1 64956866 64956886 ZNF263_MA0528.1 9.106620995116899 + +chr1 64957123 64957143 ZNF263_MA0528.1 8.358475845280646 + +chr1 64957126 64957146 ZNF263_MA0528.1 8.134752509428651 + +chr1 64957174 64957194 ZNF263_MA0528.1 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65068338 ZNF263_MA0528.1 9.981698051905706 - +chr1 65068321 65068341 ZNF263_MA0528.1 10.245510366020950 - +chr1 65068327 65068347 ZNF263_MA0528.1 7.580562415405981 - +chr1 65068330 65068350 ZNF263_MA0528.1 8.253495438164347 - +chr1 65068331 65068351 ZNF263_MA0528.1 8.032297508189481 - +chr1 65148144 65148164 ZNF263_MA0528.1 9.431592882691378 + +chr1 65148147 65148167 ZNF263_MA0528.1 7.010452208066765 + +chr1 65148150 65148170 ZNF263_MA0528.1 12.810507135199254 + +chr1 65148153 65148173 ZNF263_MA0528.1 15.668823678417491 + +chr1 65148156 65148176 ZNF263_MA0528.1 8.775212351129941 + +chr1 65148162 65148182 ZNF263_MA0528.1 8.474218770417119 + +chr1 65148168 65148188 ZNF263_MA0528.1 10.304124019389180 + +chr1 65148171 65148191 ZNF263_MA0528.1 10.535909845199170 + +chr1 65148306 65148326 ZNF263_MA0528.1 6.887076718716648 + +chr1 65148772 65148792 ZNF263_MA0528.1 10.242071107480273 - +chr1 65215729 65215749 ZNF263_MA0528.1 6.650242259574998 - +chr1 65254546 65254566 ZNF263_MA0528.1 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66283084 ZNF263_MA0528.1 7.052061747682375 + +chr1 66283215 66283235 ZNF263_MA0528.1 7.952869314549204 - +chr1 66283218 66283238 ZNF263_MA0528.1 7.855125920946428 - +chr1 66283862 66283882 ZNF263_MA0528.1 8.043783155981453 + +chr1 66283864 66283884 ZNF263_MA0528.1 7.026844854920000 + +chr1 66283871 66283891 ZNF263_MA0528.1 9.153479007007281 + +chr1 66283877 66283897 ZNF263_MA0528.1 8.466527688295631 + +chr1 66283886 66283906 ZNF263_MA0528.1 9.599110635783047 + +chr1 66336014 66336034 ZNF263_MA0528.1 8.776101516089923 + +chr1 66336017 66336037 ZNF263_MA0528.1 7.248899279200529 + +chr1 66336172 66336192 ZNF263_MA0528.1 10.383967260138315 + +chr1 66351973 66351993 ZNF263_MA0528.1 7.795077430770326 - +chr1 66351976 66351996 ZNF263_MA0528.1 6.931209025338707 - +chr1 66374780 66374800 ZNF263_MA0528.1 8.298076191045954 + +chr1 66374784 66374804 ZNF263_MA0528.1 6.835239749587471 + +chr1 66374790 66374810 ZNF263_MA0528.1 6.608359792534323 + +chr1 66380501 66380521 ZNF263_MA0528.1 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66925485 ZNF263_MA0528.1 6.599814946639325 - +chr1 66925569 66925589 ZNF263_MA0528.1 10.303988481724879 + +chr1 66925573 66925593 ZNF263_MA0528.1 8.648815481062110 + +chr1 66925584 66925604 ZNF263_MA0528.1 6.544979814864922 + +chr1 66930210 66930230 ZNF263_MA0528.1 6.928752133205816 + +chr1 66930584 66930604 ZNF263_MA0528.1 7.621950722245135 + +chr1 66984609 66984629 ZNF263_MA0528.1 7.372667305866495 + +chr1 67053449 67053469 ZNF263_MA0528.1 8.112448168428624 - +chr1 67053675 67053695 ZNF263_MA0528.1 6.898640575582764 - +chr1 67053919 67053939 ZNF263_MA0528.1 7.895407118708696 - +chr1 67053922 67053942 ZNF263_MA0528.1 8.810655247164263 - +chr1 67054321 67054341 ZNF263_MA0528.1 8.246348795319374 + +chr1 67054467 67054487 ZNF263_MA0528.1 8.288662596604649 + +chr1 67214570 67214590 ZNF263_MA0528.1 7.683730667965689 + +chr1 67339756 67339776 ZNF263_MA0528.1 9.247399990329470 + +chr1 67340124 67340144 ZNF263_MA0528.1 12.174393662039531 - +chr1 67340127 67340147 ZNF263_MA0528.1 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67833443 ZNF263_MA0528.1 15.714297079734719 - +chr1 67833426 67833446 ZNF263_MA0528.1 17.254008541457736 - +chr1 68181232 68181252 ZNF263_MA0528.1 7.143493134112800 + +chr1 69566994 69567014 ZNF263_MA0528.1 7.148577117289076 + +chr1 69567167 69567187 ZNF263_MA0528.1 7.041875802521920 + +chr1 69567280 69567300 ZNF263_MA0528.1 6.872667974647910 + +chr1 69737924 69737944 ZNF263_MA0528.1 6.876947057127127 + +chr1 69967336 69967356 ZNF263_MA0528.1 9.671935027388745 - +chr1 69967339 69967359 ZNF263_MA0528.1 7.586311177558793 - +chr1 69967415 69967435 ZNF263_MA0528.1 7.009711408804782 - +chr1 69967418 69967438 ZNF263_MA0528.1 7.903576599886945 - +chr1 70133292 70133312 ZNF263_MA0528.1 7.146599537149894 - +chr1 70205035 70205055 ZNF263_MA0528.1 7.362960381375975 + +chr1 70205850 70205870 ZNF263_MA0528.1 6.403493051595067 - +chr1 70205896 70205916 ZNF263_MA0528.1 8.678981176449442 - +chr1 70221210 70221230 ZNF263_MA0528.1 6.867809083247662 + +chr1 70221553 70221573 ZNF263_MA0528.1 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70411550 ZNF263_MA0528.1 8.081680384142969 - +chr1 70504879 70504899 ZNF263_MA0528.1 7.417506730605767 - +chr1 70504881 70504901 ZNF263_MA0528.1 7.225944809091668 - +chr1 70504945 70504965 ZNF263_MA0528.1 9.786984770657011 + +chr1 70517772 70517792 ZNF263_MA0528.1 7.177423807338283 + +chr1 70685715 70685735 ZNF263_MA0528.1 8.227281181751552 + +chr1 70685877 70685897 ZNF263_MA0528.1 8.477860548824394 + +chr1 70685886 70685906 ZNF263_MA0528.1 8.233388849126586 + +chr1 71053878 71053898 ZNF263_MA0528.1 7.451380500879869 + +chr1 71080516 71080536 ZNF263_MA0528.1 6.344864034113872 + +chr1 71080644 71080664 ZNF263_MA0528.1 7.676094035708722 + +chr1 71080650 71080670 ZNF263_MA0528.1 10.711728001931396 + +chr1 71081039 71081059 ZNF263_MA0528.1 7.036419719525180 + +chr1 71081350 71081370 ZNF263_MA0528.1 6.595811361166000 + +chr1 72282881 72282901 ZNF263_MA0528.1 8.171910038756568 + +chr1 72283064 72283084 ZNF263_MA0528.1 10.529496492124018 + +chr1 72283065 72283085 ZNF263_MA0528.1 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74811653 ZNF263_MA0528.1 7.349327480544521 - +chr1 75614781 75614801 ZNF263_MA0528.1 9.624774556518519 - +chr1 75615098 75615118 ZNF263_MA0528.1 7.779811907454642 - +chr1 75724658 75724678 ZNF263_MA0528.1 7.489111403584740 - +chr1 75724661 75724681 ZNF263_MA0528.1 6.339643923877802 - +chr1 75784822 75784842 ZNF263_MA0528.1 6.842882934603795 - +chr1 75937602 75937622 ZNF263_MA0528.1 7.074285151183608 - +chr1 75937603 75937623 ZNF263_MA0528.1 9.139616572283709 - +chr1 75937794 75937814 ZNF263_MA0528.1 9.055780649237803 - +chr1 75937802 75937822 ZNF263_MA0528.1 6.598030208858155 - +chr1 75981237 75981257 ZNF263_MA0528.1 7.389334957405685 - +chr1 75981238 75981258 ZNF263_MA0528.1 8.511359475530718 - +chr1 75981241 75981261 ZNF263_MA0528.1 8.883787673732387 - +chr1 75981246 75981266 ZNF263_MA0528.1 8.282170907069911 - +chr1 75981253 75981273 ZNF263_MA0528.1 8.937057427948513 - +chr1 75981256 75981276 ZNF263_MA0528.1 6.575297445458730 - +chr1 75991627 75991647 ZNF263_MA0528.1 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77978803 ZNF263_MA0528.1 7.962892807357855 - +chr1 77978930 77978950 ZNF263_MA0528.1 6.845617121231022 - +chr1 77978963 77978983 ZNF263_MA0528.1 8.613752986037357 + +chr1 78061434 78061454 ZNF263_MA0528.1 7.682341102373458 + +chr1 78088487 78088507 ZNF263_MA0528.1 8.472177174519370 + +chr1 78143223 78143243 ZNF263_MA0528.1 7.641306961610910 - +chr1 78143226 78143246 ZNF263_MA0528.1 8.091299786989614 - +chr1 78143266 78143286 ZNF263_MA0528.1 8.348320034311216 - +chr1 78143269 78143289 ZNF263_MA0528.1 7.110177240768401 - +chr1 78143460 78143480 ZNF263_MA0528.1 9.630752688512679 - +chr1 78143469 78143489 ZNF263_MA0528.1 7.786306119245069 - +chr1 78143471 78143491 ZNF263_MA0528.1 6.798213379060849 - +chr1 78277478 78277498 ZNF263_MA0528.1 9.944850539108433 - +chr1 78277491 78277511 ZNF263_MA0528.1 7.069454258074263 - +chr1 78333731 78333751 ZNF263_MA0528.1 9.845239482060316 + +chr1 78377604 78377624 ZNF263_MA0528.1 9.079874034998394 - +chr1 78377607 78377627 ZNF263_MA0528.1 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79053273 ZNF263_MA0528.1 12.333157761507659 - +chr1 79053256 79053276 ZNF263_MA0528.1 12.587811669515380 - +chr1 79260595 79260615 ZNF263_MA0528.1 6.526747772855408 + +chr1 79668259 79668279 ZNF263_MA0528.1 6.551017569376859 - +chr1 79711117 79711137 ZNF263_MA0528.1 6.380660390359576 + +chr1 79741968 79741988 ZNF263_MA0528.1 7.048034538067353 + +chr1 79742353 79742373 ZNF263_MA0528.1 7.284989850722150 - +chr1 79777982 79778002 ZNF263_MA0528.1 7.332574203933135 + +chr1 80639908 80639928 ZNF263_MA0528.1 6.514966843254519 + +chr1 80639922 80639942 ZNF263_MA0528.1 6.745307207911116 + +chr1 81505634 81505654 ZNF263_MA0528.1 7.542423801078069 - +chr1 81505639 81505659 ZNF263_MA0528.1 6.786837149566691 - +chr1 81597852 81597872 ZNF263_MA0528.1 7.610112030154088 + +chr1 81801072 81801092 ZNF263_MA0528.1 6.553175144114707 - +chr1 81801075 81801095 ZNF263_MA0528.1 12.656768184949838 - +chr1 81801078 81801098 ZNF263_MA0528.1 10.023000766534418 - +chr1 81801318 81801338 ZNF263_MA0528.1 8.070516396502802 + +chr1 81801330 81801350 ZNF263_MA0528.1 12.383451260276857 + +chr1 81801331 81801351 ZNF263_MA0528.1 13.683833998451226 + +chr1 81801337 81801357 ZNF263_MA0528.1 14.776000262452394 + +chr1 81801340 81801360 ZNF263_MA0528.1 11.372637039918741 + +chr1 81801405 81801425 ZNF263_MA0528.1 8.059862581563936 - +chr1 81801409 81801429 ZNF263_MA0528.1 8.634652840958882 - +chr1 81801416 81801436 ZNF263_MA0528.1 7.022980238135780 - +chr1 81801419 81801439 ZNF263_MA0528.1 12.166015823124518 - +chr1 81801425 81801445 ZNF263_MA0528.1 9.063360473895397 - +chr1 81802403 81802423 ZNF263_MA0528.1 7.667277261088497 - +chr1 81802406 81802426 ZNF263_MA0528.1 9.910825029048530 - +chr1 81802623 81802643 ZNF263_MA0528.1 7.910701418501812 + +chr1 81802629 81802649 ZNF263_MA0528.1 8.484300853873046 + +chr1 82152990 82153010 ZNF263_MA0528.1 7.179653531293857 + +chr1 82152991 82153011 ZNF263_MA0528.1 8.753910986807856 + +chr1 82152993 82153013 ZNF263_MA0528.1 9.778611295481255 + +chr1 82152996 82153016 ZNF263_MA0528.1 9.041150654578072 + +chr1 82152999 82153019 ZNF263_MA0528.1 8.652251714668981 + +chr1 83131293 83131313 ZNF263_MA0528.1 7.029813526430465 - +chr1 83487742 83487762 ZNF263_MA0528.1 8.897002156190723 - +chr1 83487743 83487763 ZNF263_MA0528.1 7.619675736342119 - +chr1 83487748 83487768 ZNF263_MA0528.1 7.803125942698715 - +chr1 83487751 83487771 ZNF263_MA0528.1 8.068379943551736 - +chr1 83487754 83487774 ZNF263_MA0528.1 7.288377793740176 - +chr1 83487757 83487777 ZNF263_MA0528.1 6.362967712293404 - +chr1 83500282 83500302 ZNF263_MA0528.1 8.611035215418273 + +chr1 83500284 83500304 ZNF263_MA0528.1 7.642432068351632 + +chr1 83500613 83500633 ZNF263_MA0528.1 6.649070062017632 + +chr1 83501281 83501301 ZNF263_MA0528.1 7.005678045110942 + +chr1 83508523 83508543 ZNF263_MA0528.1 9.564327324886026 - +chr1 83860605 83860625 ZNF263_MA0528.1 6.444394587666642 - +chr1 84078284 84078304 ZNF263_MA0528.1 10.403295756700970 - +chr1 84078524 84078544 ZNF263_MA0528.1 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84506327 ZNF263_MA0528.1 9.857360105911146 + +chr1 84506313 84506333 ZNF263_MA0528.1 9.049915535924994 + +chr1 84506410 84506430 ZNF263_MA0528.1 8.029422429048585 + +chr1 84506465 84506485 ZNF263_MA0528.1 7.875114675046782 + +chr1 84506468 84506488 ZNF263_MA0528.1 8.814843188052389 + +chr1 84506563 84506583 ZNF263_MA0528.1 7.053298278826281 + +chr1 84506566 84506586 ZNF263_MA0528.1 9.904187714614928 + +chr1 84506773 84506793 ZNF263_MA0528.1 7.383083627396446 + +chr1 84574481 84574501 ZNF263_MA0528.1 12.493381067988679 + +chr1 84574505 84574525 ZNF263_MA0528.1 7.020812408792442 + +chr1 84574514 84574534 ZNF263_MA0528.1 8.867763814315916 + +chr1 84599131 84599151 ZNF263_MA0528.1 11.202137621296403 + +chr1 84599157 84599177 ZNF263_MA0528.1 9.886077321127598 - +chr1 84599158 84599178 ZNF263_MA0528.1 7.658078232852240 - +chr1 84599175 84599195 ZNF263_MA0528.1 7.071919651937908 - +chr1 84599499 84599519 ZNF263_MA0528.1 8.460052951053221 + +chr1 84599502 84599522 ZNF263_MA0528.1 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84988829 ZNF263_MA0528.1 7.543918635504548 - +chr1 84988810 84988830 ZNF263_MA0528.1 9.562114649342172 - +chr1 84988815 84988835 ZNF263_MA0528.1 6.698358633464135 - +chr1 84988816 84988836 ZNF263_MA0528.1 8.919256601893224 - +chr1 84988819 84988839 ZNF263_MA0528.1 11.379373457641439 - +chr1 84988887 84988907 ZNF263_MA0528.1 6.906050089464954 - +chr1 84988944 84988964 ZNF263_MA0528.1 8.316938142483234 - +chr1 84997178 84997198 ZNF263_MA0528.1 7.870389485720930 - +chr1 85047934 85047954 ZNF263_MA0528.1 7.131827080155075 - +chr1 85047940 85047960 ZNF263_MA0528.1 6.591083253884527 - +chr1 85048115 85048135 ZNF263_MA0528.1 6.396262655449069 + +chr1 85048681 85048701 ZNF263_MA0528.1 8.028786015419783 - +chr1 85148771 85148791 ZNF263_MA0528.1 6.676228355850606 - +chr1 85148774 85148794 ZNF263_MA0528.1 7.189521792656517 - +chr1 85200602 85200622 ZNF263_MA0528.1 7.077444703581153 - +chr1 85201196 85201216 ZNF263_MA0528.1 9.003466205149754 - +chr1 85201205 85201225 ZNF263_MA0528.1 6.590054442061192 - +chr1 85201214 85201234 ZNF263_MA0528.1 8.789695228463318 - +chr1 85201865 85201885 ZNF263_MA0528.1 10.719954895013943 + +chr1 85259219 85259239 ZNF263_MA0528.1 7.040009081464330 + +chr1 85259293 85259313 ZNF263_MA0528.1 8.765936835070772 + +chr1 85276009 85276029 ZNF263_MA0528.1 8.241467935484692 + +chr1 85276015 85276035 ZNF263_MA0528.1 8.568237553492962 + +chr1 85276018 85276038 ZNF263_MA0528.1 6.984464211548978 + +chr1 85276353 85276373 ZNF263_MA0528.1 6.816469580863057 + +chr1 85276435 85276455 ZNF263_MA0528.1 8.182425226013612 + +chr1 85276441 85276461 ZNF263_MA0528.1 11.169332812489763 + +chr1 85276442 85276462 ZNF263_MA0528.1 7.946462017553163 + +chr1 85276448 85276468 ZNF263_MA0528.1 7.587506748694750 + +chr1 85276453 85276473 ZNF263_MA0528.1 7.799796074683506 + +chr1 85276938 85276958 ZNF263_MA0528.1 7.597437792332940 - +chr1 85465316 85465336 ZNF263_MA0528.1 7.564353720956344 + +chr1 85576715 85576735 ZNF263_MA0528.1 7.860355502287370 + +chr1 85577319 85577339 ZNF263_MA0528.1 7.743164305168664 + +chr1 85577340 85577360 ZNF263_MA0528.1 6.460387083240526 + +chr1 85577343 85577363 ZNF263_MA0528.1 6.586917227848982 + +chr1 85707848 85707868 ZNF263_MA0528.1 8.636223884733447 - +chr1 85707851 85707871 ZNF263_MA0528.1 10.543366656279391 - +chr1 85707854 85707874 ZNF263_MA0528.1 10.332604136097924 - +chr1 85707857 85707877 ZNF263_MA0528.1 6.988183641001857 - +chr1 85707860 85707880 ZNF263_MA0528.1 7.065398296051903 - +chr1 85707875 85707895 ZNF263_MA0528.1 6.342266539366237 - +chr1 85707914 85707934 ZNF263_MA0528.1 6.585648196490014 - +chr1 85707917 85707937 ZNF263_MA0528.1 6.631657399807278 - +chr1 85707965 85707985 ZNF263_MA0528.1 7.270903145875749 - +chr1 85707974 85707994 ZNF263_MA0528.1 7.730621217291037 - +chr1 85707977 85707997 ZNF263_MA0528.1 8.421337646494644 - +chr1 85708090 85708110 ZNF263_MA0528.1 10.169407619162348 - +chr1 85708093 85708113 ZNF263_MA0528.1 8.319603784761775 - +chr1 85708094 85708114 ZNF263_MA0528.1 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86704734 ZNF263_MA0528.1 9.082694445078307 - +chr1 86704717 86704737 ZNF263_MA0528.1 7.514344575881873 - +chr1 86704718 86704738 ZNF263_MA0528.1 9.371700140057699 - +chr1 86704979 86704999 ZNF263_MA0528.1 7.344262052721177 + +chr1 86705353 86705373 ZNF263_MA0528.1 7.071580648032658 - +chr1 86705365 86705385 ZNF263_MA0528.1 7.616891567604036 - +chr1 86755779 86755799 ZNF263_MA0528.1 6.519245886283476 - +chr1 86774087 86774107 ZNF263_MA0528.1 7.995211726118478 - +chr1 86774091 86774111 ZNF263_MA0528.1 7.027521691332330 - +chr1 86774106 86774126 ZNF263_MA0528.1 7.498791459556401 - +chr1 86774111 86774131 ZNF263_MA0528.1 6.364766385621651 - +chr1 86774125 86774145 ZNF263_MA0528.1 10.011301159983327 - +chr1 86774284 86774304 ZNF263_MA0528.1 9.574135513701565 - +chr1 86774290 86774310 ZNF263_MA0528.1 7.966446344179149 - +chr1 86774291 86774311 ZNF263_MA0528.1 8.318832494045358 - +chr1 86774522 86774542 ZNF263_MA0528.1 8.137096569535856 - +chr1 86774535 86774555 ZNF263_MA0528.1 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88891155 ZNF263_MA0528.1 15.711136493129077 + +chr1 88891138 88891158 ZNF263_MA0528.1 13.327147879673143 + +chr1 88891140 88891160 ZNF263_MA0528.1 8.869932735540935 + +chr1 88891143 88891163 ZNF263_MA0528.1 13.424331280966165 + +chr1 88891146 88891166 ZNF263_MA0528.1 8.295744261274253 + +chr1 88891147 88891167 ZNF263_MA0528.1 12.399705641701653 + +chr1 88891150 88891170 ZNF263_MA0528.1 6.554259259838283 + +chr1 88891151 88891171 ZNF263_MA0528.1 8.277470642339230 + +chr1 88891158 88891178 ZNF263_MA0528.1 7.583149046976146 + +chr1 88891161 88891181 ZNF263_MA0528.1 7.221823717562850 + +chr1 88891874 88891894 ZNF263_MA0528.1 7.641532248579095 - +chr1 88891880 88891900 ZNF263_MA0528.1 11.818653855845209 - +chr1 88891883 88891903 ZNF263_MA0528.1 11.163191191307584 - +chr1 88891920 88891940 ZNF263_MA0528.1 7.093756640858793 - +chr1 88891927 88891947 ZNF263_MA0528.1 6.754614784641257 - +chr1 88992783 88992803 ZNF263_MA0528.1 7.373720242510922 + +chr1 88992923 88992943 ZNF263_MA0528.1 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89524716 ZNF263_MA0528.1 19.117921978878815 - +chr1 89524699 89524719 ZNF263_MA0528.1 19.652908022716392 - +chr1 89524705 89524725 ZNF263_MA0528.1 12.745143663334010 - +chr1 89524768 89524788 ZNF263_MA0528.1 13.533393764751656 - +chr1 89525072 89525092 ZNF263_MA0528.1 10.523185856148954 + +chr1 89525075 89525095 ZNF263_MA0528.1 7.968833507656326 + +chr1 89525081 89525101 ZNF263_MA0528.1 7.966556932048807 + +chr1 89632726 89632746 ZNF263_MA0528.1 7.569368037060213 + +chr1 89632729 89632749 ZNF263_MA0528.1 7.706290599008405 + +chr1 89633081 89633101 ZNF263_MA0528.1 9.319878209349312 + +chr1 89633084 89633104 ZNF263_MA0528.1 11.426560317438915 + +chr1 89633147 89633167 ZNF263_MA0528.1 8.122138951963906 + +chr1 89670084 89670104 ZNF263_MA0528.1 6.328151089883693 - +chr1 89693416 89693436 ZNF263_MA0528.1 6.613551772800580 - +chr1 89693629 89693649 ZNF263_MA0528.1 8.691790252650254 - +chr1 89763207 89763227 ZNF263_MA0528.1 6.360286215548237 + +chr1 89763210 89763230 ZNF263_MA0528.1 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225468115 225468135 ZNF263_MA0528.1 11.564047933955331 + +chr1 225468164 225468184 ZNF263_MA0528.1 6.373192947187601 + +chr1 225475263 225475283 ZNF263_MA0528.1 6.988197634728509 - +chr1 225653185 225653205 ZNF263_MA0528.1 10.767304978716522 - +chr1 225653186 225653206 ZNF263_MA0528.1 15.453678638051937 - +chr1 225653215 225653235 ZNF263_MA0528.1 9.669711512654951 + +chr1 225653220 225653240 ZNF263_MA0528.1 7.117436147162721 + +chr1 225653221 225653241 ZNF263_MA0528.1 6.355187402254066 + +chr1 225653226 225653246 ZNF263_MA0528.1 7.404546743973864 + +chr1 225653227 225653247 ZNF263_MA0528.1 14.730454347400402 + +chr1 225653228 225653248 ZNF263_MA0528.1 6.362297127050125 + +chr1 225653230 225653250 ZNF263_MA0528.1 7.024415817385286 + +chr1 225653232 225653252 ZNF263_MA0528.1 9.662977843183683 + +chr1 225653236 225653256 ZNF263_MA0528.1 9.933781540095845 + +chr1 225777426 225777446 ZNF263_MA0528.1 6.572015919159937 - +chr1 225778151 225778171 ZNF263_MA0528.1 7.445149304329301 - +chr1 225778152 225778172 ZNF263_MA0528.1 6.959524703861927 - +chr1 225778154 225778174 ZNF263_MA0528.1 7.154835548627704 - +chr1 225778315 225778335 ZNF263_MA0528.1 7.027739682703956 - +chr1 225848229 225848249 ZNF263_MA0528.1 8.581277372013252 + +chr1 225882018 225882038 ZNF263_MA0528.1 6.598641406006443 + +chr1 225882024 225882044 ZNF263_MA0528.1 6.737320613752782 + +chr1 225882025 225882045 ZNF263_MA0528.1 8.533547062343160 + +chr1 225882279 225882299 ZNF263_MA0528.1 7.840012033475778 - +chr1 225897469 225897489 ZNF263_MA0528.1 10.336555452609337 - +chr1 225923867 225923887 ZNF263_MA0528.1 10.208835560649428 - +chr1 225923870 225923890 ZNF263_MA0528.1 10.887633287527295 - +chr1 225924505 225924525 ZNF263_MA0528.1 8.645631793445514 - +chr1 225924508 225924528 ZNF263_MA0528.1 9.597906411903340 - +chr1 225999149 225999169 ZNF263_MA0528.1 8.691527168739402 - +chr1 225999416 225999436 ZNF263_MA0528.1 8.299690619242623 - +chr1 225999421 225999441 ZNF263_MA0528.1 9.613228074780233 - +chr1 225999483 225999503 ZNF263_MA0528.1 10.809765252881723 + +chr1 226029178 226029198 ZNF263_MA0528.1 6.491497147363431 - +chr1 226029181 226029201 ZNF263_MA0528.1 8.127210474387253 - +chr1 226062179 226062199 ZNF263_MA0528.1 7.531847056583805 - +chr1 226062250 226062270 ZNF263_MA0528.1 8.036037505877127 - +chr1 226062317 226062337 ZNF263_MA0528.1 10.428088503185448 - +chr1 226062324 226062344 ZNF263_MA0528.1 10.941411828360044 - +chr1 226062326 226062346 ZNF263_MA0528.1 9.974400925158905 - +chr1 226062327 226062347 ZNF263_MA0528.1 11.168876200543485 - +chr1 226062591 226062611 ZNF263_MA0528.1 7.144502978747157 + +chr1 226062798 226062818 ZNF263_MA0528.1 8.618586986110142 + +chr1 226063044 226063064 ZNF263_MA0528.1 10.492324996304182 - +chr1 226063050 226063070 ZNF263_MA0528.1 7.381912658732666 - +chr1 226063051 226063071 ZNF263_MA0528.1 7.814417102255817 - +chr1 226063057 226063077 ZNF263_MA0528.1 6.409532412572409 - +chr1 226063066 226063086 ZNF263_MA0528.1 7.138227651587380 - +chr1 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226764316 226764336 ZNF263_MA0528.1 6.457362834063512 + +chr1 226764321 226764341 ZNF263_MA0528.1 8.763441139539525 + +chr1 226764784 226764804 ZNF263_MA0528.1 6.622122710850439 - +chr1 226764862 226764882 ZNF263_MA0528.1 8.312881125133433 - +chr1 226764939 226764959 ZNF263_MA0528.1 8.408051771462187 - +chr1 226764948 226764968 ZNF263_MA0528.1 7.432400694870866 - +chr1 226764955 226764975 ZNF263_MA0528.1 6.880194146373828 - +chr1 226773128 226773148 ZNF263_MA0528.1 7.146599537149894 - +chr1 226798798 226798818 ZNF263_MA0528.1 10.939471601129236 - +chr1 226799024 226799044 ZNF263_MA0528.1 7.139794471069433 + +chr1 226799081 226799101 ZNF263_MA0528.1 7.128719975389186 + +chr1 226870836 226870856 ZNF263_MA0528.1 8.944739931225733 + +chr1 226883087 226883107 ZNF263_MA0528.1 9.799740075694903 - +chr1 226883090 226883110 ZNF263_MA0528.1 7.685305723382975 - +chr1 226915216 226915236 ZNF263_MA0528.1 6.521716960294002 - +chr1 226940068 226940088 ZNF263_MA0528.1 7.998886121616168 + +chr1 226940075 226940095 ZNF263_MA0528.1 7.027700399397476 + +chr1 226940117 226940137 ZNF263_MA0528.1 7.399869774951830 - +chr1 226996079 226996099 ZNF263_MA0528.1 6.504528880922269 - +chr1 226996083 226996103 ZNF263_MA0528.1 9.243830284812468 - +chr1 226996084 226996104 ZNF263_MA0528.1 9.266676446293220 - +chr1 226996092 226996112 ZNF263_MA0528.1 7.204875315431279 - +chr1 227563963 227563983 ZNF263_MA0528.1 7.765203374119404 + +chr1 227564162 227564182 ZNF263_MA0528.1 7.309524023096796 + +chr1 227564165 227564185 ZNF263_MA0528.1 8.878721117015798 + +chr1 227728445 227728465 ZNF263_MA0528.1 8.544595702198500 - +chr1 227728448 227728468 ZNF263_MA0528.1 9.896467067188070 - +chr1 227728458 227728478 ZNF263_MA0528.1 9.343723900413126 - +chr1 227728504 227728524 ZNF263_MA0528.1 8.879530323213434 - +chr1 227728520 227728540 ZNF263_MA0528.1 11.511421999021122 - +chr1 227728558 227728578 ZNF263_MA0528.1 8.352683165773882 - +chr1 227728625 227728645 ZNF263_MA0528.1 6.892633927560550 - +chr1 227734844 227734864 ZNF263_MA0528.1 6.997809159721458 - +chr1 227734914 227734934 ZNF263_MA0528.1 6.487516693035955 - +chr1 227788205 227788225 ZNF263_MA0528.1 8.471538454826820 + +chr1 227788212 227788232 ZNF263_MA0528.1 7.180310340468775 + +chr1 227788221 227788241 ZNF263_MA0528.1 11.858505143867561 + +chr1 227788225 227788245 ZNF263_MA0528.1 9.051327720609736 + +chr1 227788227 227788247 ZNF263_MA0528.1 8.532998016326156 + +chr1 227788535 227788555 ZNF263_MA0528.1 13.307602809191057 + +chr1 227788538 227788558 ZNF263_MA0528.1 8.121925848160114 + +chr1 228082092 228082112 ZNF263_MA0528.1 7.851726079705331 - +chr1 228082809 228082829 ZNF263_MA0528.1 8.174968260699355 + +chr1 228083031 228083051 ZNF263_MA0528.1 10.371467157090047 - +chr1 228083107 228083127 ZNF263_MA0528.1 6.759663101811695 - +chr1 228109344 228109364 ZNF263_MA0528.1 6.485174560612043 + +chr1 228109565 228109585 ZNF263_MA0528.1 13.210120711675026 + +chr1 228109568 228109588 ZNF263_MA0528.1 11.430376373136085 + +chr1 228109591 228109611 ZNF263_MA0528.1 7.447709111321307 + +chr1 228109594 228109614 ZNF263_MA0528.1 6.448399283856551 + +chr1 228109816 228109836 ZNF263_MA0528.1 6.457657291070456 + +chr1 228140068 228140088 ZNF263_MA0528.1 6.995101173425325 + +chr1 228140069 228140089 ZNF263_MA0528.1 6.738644022820059 + +chr1 228165714 228165734 ZNF263_MA0528.1 9.056077185307734 - +chr1 228166274 228166294 ZNF263_MA0528.1 6.462456608166540 + +chr1 228213478 228213498 ZNF263_MA0528.1 8.712663320546870 + +chr1 228213754 228213774 ZNF263_MA0528.1 6.878781680570095 + +chr1 228406783 228406803 ZNF263_MA0528.1 7.246342964342070 + +chr1 228406822 228406842 ZNF263_MA0528.1 6.562903077451445 + +chr1 228406837 228406857 ZNF263_MA0528.1 6.340491731383880 + +chr1 228407066 228407086 ZNF263_MA0528.1 7.891493828442284 + +chr1 228407080 228407100 ZNF263_MA0528.1 7.489442823815613 + +chr1 228407097 228407117 ZNF263_MA0528.1 7.891493828442284 + +chr1 228407111 228407131 ZNF263_MA0528.1 7.489442823815613 + +chr1 228407132 228407152 ZNF263_MA0528.1 8.507341638296891 + +chr1 228407142 228407162 ZNF263_MA0528.1 9.594911456715431 + +chr1 228407147 228407167 ZNF263_MA0528.1 6.388383374547265 + +chr1 228458198 228458218 ZNF263_MA0528.1 7.172220081136293 + +chr1 228458789 228458809 ZNF263_MA0528.1 12.512444405214255 - +chr1 228458790 228458810 ZNF263_MA0528.1 8.157428430767945 - +chr1 228458839 228458859 ZNF263_MA0528.1 6.704114062815714 - +chr1 228458933 228458953 ZNF263_MA0528.1 6.876309218155994 - +chr1 228459304 228459324 ZNF263_MA0528.1 8.349510218167405 - +chr1 228463728 228463748 ZNF263_MA0528.1 11.356778199961038 + +chr1 228463735 228463755 ZNF263_MA0528.1 8.922044462830451 + +chr1 228463736 228463756 ZNF263_MA0528.1 8.184480663781272 + +chr1 228464506 228464526 ZNF263_MA0528.1 7.172220081136293 - +chr1 228486830 228486850 ZNF263_MA0528.1 6.842471174751485 + +chr1 228500723 228500743 ZNF263_MA0528.1 8.474096483489008 + +chr1 228500726 228500746 ZNF263_MA0528.1 8.637901820573425 + +chr1 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54376546 ZNF282_MA1154.1 4.209161310879553 - +chr1 54489491 54489507 ZNF282_MA1154.1 5.486459268872726 + +chr1 54715820 54715836 ZNF282_MA1154.1 5.769559226824503 - +chr1 55214421 55214437 ZNF282_MA1154.1 3.501002446103093 + +chr1 56135443 56135459 ZNF282_MA1154.1 10.275780201770953 + +chr1 56135494 56135510 ZNF282_MA1154.1 6.524022023780823 + +chr1 56135616 56135632 ZNF282_MA1154.1 9.226372019115313 - +chr1 58392164 58392180 ZNF282_MA1154.1 6.410184983717544 - +chr1 58584794 58584810 ZNF282_MA1154.1 3.904317823545842 - +chr1 59008046 59008062 ZNF282_MA1154.1 9.662256860053144 - +chr1 59026075 59026091 ZNF282_MA1154.1 4.152021451021561 + +chr1 59297017 59297033 ZNF282_MA1154.1 5.155822603746117 + +chr1 59926632 59926648 ZNF282_MA1154.1 5.759291181564068 - +chr1 62436701 62436717 ZNF282_MA1154.1 10.411123192672715 + +chr1 63367860 63367876 ZNF282_MA1154.1 4.229548635552703 - +chr1 63593330 63593346 ZNF282_MA1154.1 3.016308605857177 + +chr1 63594075 63594091 ZNF282_MA1154.1 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86502515 ZNF282_MA1154.1 4.533169012000813 - +chr1 88891632 88891648 ZNF282_MA1154.1 4.064450526658272 - +chr1 88891758 88891774 ZNF282_MA1154.1 4.746349043140155 - +chr1 88992410 88992426 ZNF282_MA1154.1 4.773048470240306 + +chr1 89781561 89781577 ZNF282_MA1154.1 7.204997946361170 + +chr1 90358212 90358228 ZNF282_MA1154.1 5.825103227079665 + +chr1 91885913 91885929 ZNF282_MA1154.1 3.562381839492430 - +chr1 92538129 92538145 ZNF282_MA1154.1 5.325128866734822 - +chr1 92951430 92951446 ZNF282_MA1154.1 9.640630891970023 + +chr1 93079358 93079374 ZNF282_MA1154.1 5.201495289506657 + +chr1 93079716 93079732 ZNF282_MA1154.1 8.195624423162748 - +chr1 93179727 93179743 ZNF282_MA1154.1 5.643368542164637 - +chr1 93180012 93180028 ZNF282_MA1154.1 3.602657335073858 - +chr1 93681475 93681491 ZNF282_MA1154.1 6.835084502065524 + +chr1 94037668 94037684 ZNF282_MA1154.1 4.072898923747264 + +chr1 97138554 97138570 ZNF282_MA1154.1 3.236439033214527 - +chr1 99766149 99766165 ZNF282_MA1154.1 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5.469607278965867 - diff --git a/demo/known_tfbs_chr1_hg38/ZNF354C_MA0130.1.bed b/demo/known_tfbs_chr1_hg38/ZNF354C_MA0130.1.bed new file mode 100644 index 0000000..05fd1db --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/ZNF354C_MA0130.1.bed @@ -0,0 +1,340 @@ +chr1 1678668 1678673 ZNF354C_MA0130.1 7.051830321381580 + +chr1 1693325 1693330 ZNF354C_MA0130.1 7.051830321381580 + +chr1 2548056 2548061 ZNF354C_MA0130.1 7.051830321381580 - +chr1 2556703 2556708 ZNF354C_MA0130.1 7.051830321381580 + +chr1 2653642 2653647 ZNF354C_MA0130.1 7.051830321381580 + +chr1 2654525 2654530 ZNF354C_MA0130.1 7.051830321381580 + +chr1 2684388 2684393 ZNF354C_MA0130.1 7.051830321381580 + +chr1 3625223 3625228 ZNF354C_MA0130.1 7.051830321381580 + +chr1 3665908 3665913 ZNF354C_MA0130.1 7.051830321381580 - +chr1 3747317 3747322 ZNF354C_MA0130.1 7.051830321381580 + +chr1 6206022 6206027 ZNF354C_MA0130.1 7.051830321381580 - +chr1 8167644 8167649 ZNF354C_MA0130.1 7.051830321381580 - +chr1 8397691 8397696 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179815052 ZNF354C_MA0130.1 7.051830321381580 - +chr1 179882258 179882263 ZNF354C_MA0130.1 7.051830321381580 + +chr1 180631762 180631767 ZNF354C_MA0130.1 7.051830321381580 - +chr1 181485781 181485786 ZNF354C_MA0130.1 7.051830321381580 + +chr1 182390880 182390885 ZNF354C_MA0130.1 7.051830321381580 + +chr1 182391319 182391324 ZNF354C_MA0130.1 7.051830321381580 + diff --git a/demo/known_tfbs_chr1_hg38/ZNF384_MA1125.1.bed b/demo/known_tfbs_chr1_hg38/ZNF384_MA1125.1.bed new file mode 100644 index 0000000..cbf4312 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/ZNF384_MA1125.1.bed @@ -0,0 +1,4425 @@ +chr1 1692899 1692910 ZNF384_MA1125.1 7.996228335229662 - +chr1 1692900 1692911 ZNF384_MA1125.1 9.779311415973396 - +chr1 1692901 1692912 ZNF384_MA1125.1 11.342318221560006 - +chr1 1692902 1692913 ZNF384_MA1125.1 11.342318221560006 - +chr1 1692903 1692914 ZNF384_MA1125.1 11.342318221560006 - +chr1 1692904 1692915 ZNF384_MA1125.1 11.342318221560006 - +chr1 1692905 1692916 ZNF384_MA1125.1 11.342318221560006 - +chr1 1692906 1692917 ZNF384_MA1125.1 11.434934019208004 - +chr1 1692907 1692918 ZNF384_MA1125.1 11.439639910232541 - +chr1 1692908 1692919 ZNF384_MA1125.1 10.992370465176339 - +chr1 1692909 1692920 ZNF384_MA1125.1 9.741008418738245 - +chr1 1746174 1746185 ZNF384_MA1125.1 7.996228335229662 - +chr1 1746175 1746186 ZNF384_MA1125.1 9.779311415973396 - +chr1 1746176 1746187 ZNF384_MA1125.1 11.342318221560006 - +chr1 1746177 1746188 ZNF384_MA1125.1 11.342318221560006 - +chr1 1746178 1746189 ZNF384_MA1125.1 11.342318221560006 - +chr1 1746179 1746190 ZNF384_MA1125.1 11.342318221560006 - +chr1 1746180 1746191 ZNF384_MA1125.1 11.342318221560006 - +chr1 1746181 1746192 ZNF384_MA1125.1 11.342318221560006 - +chr1 1746182 1746193 ZNF384_MA1125.1 11.342318221560006 - +chr1 1746183 1746194 ZNF384_MA1125.1 11.342318221560006 - +chr1 1746184 1746195 ZNF384_MA1125.1 11.342318221560006 - +chr1 1746185 1746196 ZNF384_MA1125.1 11.434934019208004 - +chr1 1746186 1746197 ZNF384_MA1125.1 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11.342318221560010 + +chr1 2577512 2577523 ZNF384_MA1125.1 11.342318221560010 + +chr1 2577513 2577524 ZNF384_MA1125.1 9.466330947981877 + +chr1 2577514 2577525 ZNF384_MA1125.1 7.946526476801261 + +chr1 3656416 3656427 ZNF384_MA1125.1 8.057325838059951 - +chr1 3656493 3656504 ZNF384_MA1125.1 7.632893582163556 - +chr1 3665656 3665667 ZNF384_MA1125.1 9.348377887105972 - +chr1 3665657 3665668 ZNF384_MA1125.1 9.466330947981877 - +chr1 3665658 3665669 ZNF384_MA1125.1 11.342318221560006 - +chr1 3665659 3665670 ZNF384_MA1125.1 11.342318221560006 - +chr1 3665660 3665671 ZNF384_MA1125.1 11.342318221560006 - +chr1 3665661 3665672 ZNF384_MA1125.1 11.342318221560006 - +chr1 3665662 3665673 ZNF384_MA1125.1 11.342318221560006 - +chr1 3665663 3665674 ZNF384_MA1125.1 11.434934019208004 - +chr1 3665664 3665675 ZNF384_MA1125.1 10.698328697008339 - +chr1 3665665 3665676 ZNF384_MA1125.1 11.468419892028665 - +chr1 3665666 3665677 ZNF384_MA1125.1 8.832013961172743 - +chr1 3665819 3665830 ZNF384_MA1125.1 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11.174378123860667 + +chr1 3666124 3666135 ZNF384_MA1125.1 10.693622805983804 + +chr1 3666125 3666136 ZNF384_MA1125.1 11.342318221560010 + +chr1 3666126 3666137 ZNF384_MA1125.1 11.342318221560010 + +chr1 3666127 3666138 ZNF384_MA1125.1 11.342318221560010 + +chr1 3666128 3666139 ZNF384_MA1125.1 11.342318221560010 + +chr1 3666129 3666140 ZNF384_MA1125.1 11.342318221560010 + +chr1 3666130 3666141 ZNF384_MA1125.1 11.342318221560010 + +chr1 3666131 3666142 ZNF384_MA1125.1 11.342318221560010 + +chr1 3666132 3666143 ZNF384_MA1125.1 11.342318221560010 + +chr1 3666133 3666144 ZNF384_MA1125.1 11.342318221560010 + +chr1 3666134 3666145 ZNF384_MA1125.1 11.342318221560010 + +chr1 3666135 3666146 ZNF384_MA1125.1 11.342318221560010 + +chr1 3666136 3666147 ZNF384_MA1125.1 11.342318221560010 + +chr1 3666137 3666148 ZNF384_MA1125.1 11.342318221560010 + +chr1 3666138 3666149 ZNF384_MA1125.1 11.342318221560010 + +chr1 3666139 3666150 ZNF384_MA1125.1 11.342318221560010 + +chr1 3666140 3666151 ZNF384_MA1125.1 11.342318221560010 + +chr1 3666141 3666152 ZNF384_MA1125.1 9.466330947981877 + +chr1 3666142 3666153 ZNF384_MA1125.1 9.348377887105972 + +chr1 3677690 3677701 ZNF384_MA1125.1 9.466330947981877 - +chr1 3677691 3677702 ZNF384_MA1125.1 11.342318221560006 - +chr1 3677692 3677703 ZNF384_MA1125.1 11.342318221560006 - +chr1 3677693 3677704 ZNF384_MA1125.1 11.342318221560006 - +chr1 3677694 3677705 ZNF384_MA1125.1 11.342318221560006 - +chr1 3677695 3677706 ZNF384_MA1125.1 11.342318221560006 - +chr1 3677696 3677707 ZNF384_MA1125.1 11.342318221560006 - +chr1 3677697 3677708 ZNF384_MA1125.1 11.342318221560006 - +chr1 3677698 3677709 ZNF384_MA1125.1 11.342318221560006 - +chr1 3677699 3677710 ZNF384_MA1125.1 11.342318221560006 - +chr1 3677700 3677711 ZNF384_MA1125.1 11.434934019208004 - +chr1 3677701 3677712 ZNF384_MA1125.1 10.698328697008339 - +chr1 3677702 3677713 ZNF384_MA1125.1 11.468419892028665 - +chr1 3677703 3677714 ZNF384_MA1125.1 8.698735381719903 - +chr1 3900528 3900539 ZNF384_MA1125.1 8.287873430373228 - +chr1 6205477 6205488 ZNF384_MA1125.1 9.348377887105972 - +chr1 6205478 6205489 ZNF384_MA1125.1 9.466330947981877 - +chr1 6205479 6205490 ZNF384_MA1125.1 11.342318221560006 - +chr1 6205480 6205491 ZNF384_MA1125.1 11.434934019208004 - +chr1 6205481 6205492 ZNF384_MA1125.1 11.439639910232541 - +chr1 6205482 6205493 ZNF384_MA1125.1 10.992370465176339 - +chr1 6205483 6205494 ZNF384_MA1125.1 10.482319631962449 - +chr1 6554779 6554790 ZNF384_MA1125.1 9.246026426712696 - +chr1 6554780 6554791 ZNF384_MA1125.1 8.714315735240259 - +chr1 6554781 6554792 ZNF384_MA1125.1 9.230062396236573 - +chr1 6702132 6702143 ZNF384_MA1125.1 7.785371081519358 - +chr1 6702133 6702144 ZNF384_MA1125.1 9.466330947981877 - +chr1 6702134 6702145 ZNF384_MA1125.1 11.342318221560006 - +chr1 6702135 6702146 ZNF384_MA1125.1 11.342318221560006 - +chr1 6702136 6702147 ZNF384_MA1125.1 11.342318221560006 - +chr1 6702137 6702148 ZNF384_MA1125.1 11.342318221560006 - +chr1 6702138 6702149 ZNF384_MA1125.1 11.342318221560006 - +chr1 6702139 6702150 ZNF384_MA1125.1 11.342318221560006 - +chr1 6702140 6702151 ZNF384_MA1125.1 10.693622805983800 - +chr1 6702141 6702152 ZNF384_MA1125.1 11.174378123860663 - +chr1 6702142 6702153 ZNF384_MA1125.1 9.684835641786119 - +chr1 6702143 6702154 ZNF384_MA1125.1 10.933951898971685 - +chr1 6861963 6861974 ZNF384_MA1125.1 9.348377887105972 - +chr1 6861964 6861975 ZNF384_MA1125.1 9.466330947981877 - +chr1 6861965 6861976 ZNF384_MA1125.1 11.342318221560006 - +chr1 6861966 6861977 ZNF384_MA1125.1 11.342318221560006 - +chr1 6861967 6861978 ZNF384_MA1125.1 11.342318221560006 - +chr1 6861968 6861979 ZNF384_MA1125.1 11.342318221560006 - +chr1 6861969 6861980 ZNF384_MA1125.1 11.342318221560006 - +chr1 6861970 6861981 ZNF384_MA1125.1 10.693622805983800 - +chr1 6861971 6861982 ZNF384_MA1125.1 11.174378123860663 - +chr1 6861972 6861983 ZNF384_MA1125.1 9.684835641786119 - +chr1 6861973 6861984 ZNF384_MA1125.1 10.933951898971685 - +chr1 7961212 7961223 ZNF384_MA1125.1 8.275088224421328 + +chr1 7993937 7993948 ZNF384_MA1125.1 8.775188314234146 - +chr1 7994401 7994412 ZNF384_MA1125.1 7.903099005961880 - +chr1 7994402 7994413 ZNF384_MA1125.1 8.850709149454676 - +chr1 7994403 7994414 ZNF384_MA1125.1 10.149858953639074 - +chr1 7994404 7994415 ZNF384_MA1125.1 8.965096293593852 - +chr1 7994523 7994534 ZNF384_MA1125.1 9.398079745534371 - +chr1 7994524 7994535 ZNF384_MA1125.1 9.779311415973396 - +chr1 7994525 7994536 ZNF384_MA1125.1 11.342318221560006 - +chr1 7994526 7994537 ZNF384_MA1125.1 11.342318221560006 - +chr1 7994527 7994538 ZNF384_MA1125.1 11.342318221560006 - +chr1 7994528 7994539 ZNF384_MA1125.1 11.342318221560006 - +chr1 7994529 7994540 ZNF384_MA1125.1 10.693622805983800 - +chr1 7994530 7994541 ZNF384_MA1125.1 11.174378123860663 - +chr1 7994531 7994542 ZNF384_MA1125.1 10.426146855010321 - +chr1 7994532 7994543 ZNF384_MA1125.1 11.199213685343564 - +chr1 8097852 8097863 ZNF384_MA1125.1 7.932394628620293 - +chr1 8097853 8097864 ZNF384_MA1125.1 10.170674872813933 - +chr1 8097854 8097865 ZNF384_MA1125.1 10.747581418334327 - +chr1 8167476 8167487 ZNF384_MA1125.1 8.433473595348028 + +chr1 8167477 8167488 ZNF384_MA1125.1 10.727108678804465 + +chr1 8167478 8167489 ZNF384_MA1125.1 10.698328697008343 + +chr1 8167479 8167490 ZNF384_MA1125.1 11.434934019208008 + +chr1 8167480 8167491 ZNF384_MA1125.1 11.342318221560010 + +chr1 8167481 8167492 ZNF384_MA1125.1 11.342318221560010 + +chr1 8167482 8167493 ZNF384_MA1125.1 11.342318221560010 + +chr1 8167483 8167494 ZNF384_MA1125.1 11.342318221560010 + +chr1 8167484 8167495 ZNF384_MA1125.1 9.466330947981877 + +chr1 8167485 8167496 ZNF384_MA1125.1 7.946526476801261 + +chr1 8182673 8182684 ZNF384_MA1125.1 9.130066885478755 + +chr1 8182674 8182685 ZNF384_MA1125.1 11.062019164050755 + +chr1 8182675 8182686 ZNF384_MA1125.1 8.955620002883050 + +chr1 8182676 8182687 ZNF384_MA1125.1 7.877986879167355 + +chr1 8397585 8397596 ZNF384_MA1125.1 8.960390402569317 + +chr1 8397586 8397597 ZNF384_MA1125.1 10.057243155991079 + +chr1 8397587 8397598 ZNF384_MA1125.1 10.252560559759388 + +chr1 8397588 8397599 ZNF384_MA1125.1 10.826901385436646 + +chr1 8397589 8397600 ZNF384_MA1125.1 11.342318221560010 + +chr1 8397590 8397601 ZNF384_MA1125.1 11.342318221560010 + +chr1 8397591 8397602 ZNF384_MA1125.1 11.342318221560010 + +chr1 8397592 8397603 ZNF384_MA1125.1 11.342318221560010 + +chr1 8397593 8397604 ZNF384_MA1125.1 9.779311415973400 + +chr1 8397594 8397605 ZNF384_MA1125.1 9.398079745534371 + +chr1 8427634 8427645 ZNF384_MA1125.1 10.006270205110127 + +chr1 8427635 8427646 ZNF384_MA1125.1 11.733681678400547 + +chr1 8427636 8427647 ZNF384_MA1125.1 11.439639910232545 + +chr1 8427637 8427648 ZNF384_MA1125.1 11.434934019208008 + +chr1 8427638 8427649 ZNF384_MA1125.1 11.342318221560010 + +chr1 8427639 8427650 ZNF384_MA1125.1 11.342318221560010 + +chr1 8427640 8427651 ZNF384_MA1125.1 11.342318221560010 + +chr1 8427641 8427652 ZNF384_MA1125.1 11.342318221560010 + +chr1 8427642 8427653 ZNF384_MA1125.1 11.342318221560010 + +chr1 8427643 8427654 ZNF384_MA1125.1 11.342318221560010 + +chr1 8427644 8427655 ZNF384_MA1125.1 11.342318221560010 + +chr1 8427645 8427656 ZNF384_MA1125.1 11.342318221560010 + +chr1 8427646 8427657 ZNF384_MA1125.1 11.342318221560010 + +chr1 8427647 8427658 ZNF384_MA1125.1 11.342318221560010 + +chr1 8427648 8427659 ZNF384_MA1125.1 11.342318221560010 + +chr1 8427649 8427660 ZNF384_MA1125.1 9.466330947981877 + +chr1 8764399 8764410 ZNF384_MA1125.1 7.707781602193569 - +chr1 8764400 8764411 ZNF384_MA1125.1 9.010584445380484 - +chr1 8764426 8764437 ZNF384_MA1125.1 10.807850228503028 + +chr1 8764427 8764438 ZNF384_MA1125.1 8.452837892759657 + +chr1 8817460 8817471 ZNF384_MA1125.1 8.257360446803343 - +chr1 8817461 8817472 ZNF384_MA1125.1 9.940466811255298 - +chr1 8817462 8817473 ZNF384_MA1125.1 11.342318221560006 - +chr1 8817463 8817474 ZNF384_MA1125.1 11.342318221560006 - +chr1 8817464 8817475 ZNF384_MA1125.1 11.342318221560006 - +chr1 8817465 8817476 ZNF384_MA1125.1 11.342318221560006 - +chr1 8817466 8817477 ZNF384_MA1125.1 11.434934019208004 - +chr1 8817467 8817478 ZNF384_MA1125.1 11.439639910232541 - +chr1 8817468 8817479 ZNF384_MA1125.1 11.641065880752546 - +chr1 8817469 8817480 ZNF384_MA1125.1 10.134842893538426 - +chr1 8817826 8817837 ZNF384_MA1125.1 9.466330947981877 - +chr1 8817827 8817838 ZNF384_MA1125.1 11.342318221560006 - +chr1 8817828 8817839 ZNF384_MA1125.1 11.342318221560006 - +chr1 8817829 8817840 ZNF384_MA1125.1 11.342318221560006 - +chr1 8817830 8817841 ZNF384_MA1125.1 11.342318221560006 - +chr1 8817831 8817842 ZNF384_MA1125.1 11.342318221560006 - +chr1 8817832 8817843 ZNF384_MA1125.1 11.342318221560006 - +chr1 8817833 8817844 ZNF384_MA1125.1 11.342318221560006 - +chr1 8817834 8817845 ZNF384_MA1125.1 11.342318221560006 - +chr1 8817835 8817846 ZNF384_MA1125.1 11.342318221560006 - +chr1 8817836 8817847 ZNF384_MA1125.1 11.342318221560006 - +chr1 8817837 8817848 ZNF384_MA1125.1 11.342318221560006 - +chr1 8817838 8817849 ZNF384_MA1125.1 11.342318221560006 - +chr1 8817839 8817850 ZNF384_MA1125.1 11.342318221560006 - +chr1 8817840 8817851 ZNF384_MA1125.1 11.342318221560006 - +chr1 8817841 8817852 ZNF384_MA1125.1 11.342318221560006 - +chr1 8817842 8817853 ZNF384_MA1125.1 11.342318221560006 - +chr1 8817843 8817854 ZNF384_MA1125.1 11.342318221560006 - +chr1 8817844 8817855 ZNF384_MA1125.1 11.434934019208004 - +chr1 8817845 8817856 ZNF384_MA1125.1 11.439639910232541 - +chr1 8817846 8817857 ZNF384_MA1125.1 11.641065880752546 - +chr1 8817847 8817858 ZNF384_MA1125.1 10.134842893538426 - +chr1 10965360 10965371 ZNF384_MA1125.1 9.671124642460992 + +chr1 10965361 10965372 ZNF384_MA1125.1 10.631583981668335 + +chr1 10965362 10965373 ZNF384_MA1125.1 10.767977395882752 + +chr1 10965363 10965374 ZNF384_MA1125.1 9.263894579850035 + +chr1 10965364 10965375 ZNF384_MA1125.1 7.996228335229663 + +chr1 10985423 10985434 ZNF384_MA1125.1 7.888753740052802 - +chr1 10986258 10986269 ZNF384_MA1125.1 9.348377887105972 - 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ZNF384_MA1125.1 10.693622805983804 + +chr1 11909480 11909491 ZNF384_MA1125.1 11.342318221560010 + +chr1 11909481 11909492 ZNF384_MA1125.1 11.342318221560010 + +chr1 11909482 11909493 ZNF384_MA1125.1 11.342318221560010 + +chr1 11909483 11909494 ZNF384_MA1125.1 11.342318221560010 + +chr1 11909484 11909495 ZNF384_MA1125.1 11.342318221560010 + +chr1 11909485 11909496 ZNF384_MA1125.1 11.342318221560010 + +chr1 11909486 11909497 ZNF384_MA1125.1 11.342318221560010 + +chr1 11909487 11909498 ZNF384_MA1125.1 11.342318221560010 + +chr1 11909488 11909499 ZNF384_MA1125.1 11.342318221560010 + +chr1 11909489 11909500 ZNF384_MA1125.1 11.342318221560010 + +chr1 11909490 11909501 ZNF384_MA1125.1 11.342318221560010 + +chr1 11909491 11909502 ZNF384_MA1125.1 11.342318221560010 + +chr1 11909492 11909503 ZNF384_MA1125.1 11.342318221560010 + +chr1 11909493 11909504 ZNF384_MA1125.1 11.342318221560010 + +chr1 11909494 11909505 ZNF384_MA1125.1 11.342318221560010 + +chr1 11909495 11909506 ZNF384_MA1125.1 11.342318221560010 + +chr1 11909496 11909507 ZNF384_MA1125.1 9.940466811255302 + +chr1 11909497 11909508 ZNF384_MA1125.1 8.257360446803343 + +chr1 12040402 12040413 ZNF384_MA1125.1 8.863611752477389 + +chr1 12047472 12047483 ZNF384_MA1125.1 9.055560911643123 - +chr1 13713172 13713183 ZNF384_MA1125.1 9.202248810146276 - +chr1 13713173 13713184 ZNF384_MA1125.1 9.015290336405021 - +chr1 13730620 13730631 ZNF384_MA1125.1 9.133014651516277 - +chr1 13730927 13730938 ZNF384_MA1125.1 9.410568747113652 + +chr1 13730928 13730939 ZNF384_MA1125.1 9.982888566092129 + +chr1 13730929 13730940 ZNF384_MA1125.1 10.767977395882752 + +chr1 13730930 13730941 ZNF384_MA1125.1 10.826901385436646 + +chr1 13730931 13730942 ZNF384_MA1125.1 11.342318221560010 + +chr1 13730932 13730943 ZNF384_MA1125.1 11.342318221560010 + +chr1 13730933 13730944 ZNF384_MA1125.1 9.779311415973400 + +chr1 13730934 13730945 ZNF384_MA1125.1 7.835072939947760 + +chr1 13749044 13749055 ZNF384_MA1125.1 7.574832847613679 - +chr1 14600100 14600111 ZNF384_MA1125.1 8.257360446803343 - +chr1 14600101 14600112 ZNF384_MA1125.1 9.425049975131934 - +chr1 14600102 14600113 ZNF384_MA1125.1 10.767977395882749 - +chr1 14600103 14600114 ZNF384_MA1125.1 10.631583981668332 - +chr1 14600104 14600115 ZNF384_MA1125.1 10.319820058037195 - +chr1 16367851 16367862 ZNF384_MA1125.1 8.553160339958357 - +chr1 16367852 16367863 ZNF384_MA1125.1 9.745479232359937 - +chr1 16514066 16514077 ZNF384_MA1125.1 8.936568845949434 + +chr1 16514067 16514078 ZNF384_MA1125.1 8.427500629531746 + +chr1 16544857 16544868 ZNF384_MA1125.1 10.650259729661794 + +chr1 16544858 16544869 ZNF384_MA1125.1 11.641065880752549 + +chr1 16544859 16544870 ZNF384_MA1125.1 11.439639910232545 + +chr1 16544860 16544871 ZNF384_MA1125.1 10.033082608903300 + +chr1 16544861 16544872 ZNF384_MA1125.1 8.257360446803343 + +chr1 16544959 16544970 ZNF384_MA1125.1 7.785371081519358 - +chr1 16544960 16544971 ZNF384_MA1125.1 9.466330947981877 - +chr1 16544961 16544972 ZNF384_MA1125.1 10.826901385436642 - +chr1 16544962 16544973 ZNF384_MA1125.1 10.767977395882749 - +chr1 16544963 16544974 ZNF384_MA1125.1 10.631583981668332 - +chr1 16544964 16544975 ZNF384_MA1125.1 10.319820058037195 - +chr1 16544975 16544986 ZNF384_MA1125.1 7.884915420963528 - +chr1 16728307 16728318 ZNF384_MA1125.1 9.878855755417570 + +chr1 16728308 16728319 ZNF384_MA1125.1 9.818114221238963 + +chr1 16728309 16728320 ZNF384_MA1125.1 11.174378123860667 + +chr1 16728310 16728321 ZNF384_MA1125.1 10.693622805983804 + +chr1 16728311 16728322 ZNF384_MA1125.1 11.342318221560010 + +chr1 16728312 16728323 ZNF384_MA1125.1 11.342318221560010 + +chr1 16728313 16728324 ZNF384_MA1125.1 11.342318221560010 + +chr1 16728314 16728325 ZNF384_MA1125.1 11.342318221560010 + +chr1 16728315 16728326 ZNF384_MA1125.1 11.342318221560010 + +chr1 16728316 16728327 ZNF384_MA1125.1 11.342318221560010 + +chr1 16728317 16728328 ZNF384_MA1125.1 9.466330947981877 + +chr1 16728318 16728329 ZNF384_MA1125.1 7.785371081519358 + +chr1 16728416 16728427 ZNF384_MA1125.1 8.648723903643878 - +chr1 16728417 16728428 ZNF384_MA1125.1 9.345730008029619 - +chr1 16728538 16728549 ZNF384_MA1125.1 9.584646918525513 + +chr1 16896188 16896199 ZNF384_MA1125.1 8.334884831883752 - +chr1 16896189 16896200 ZNF384_MA1125.1 8.931862954924895 - +chr1 17141732 17141743 ZNF384_MA1125.1 9.098215999471716 - +chr1 17142032 17142043 ZNF384_MA1125.1 8.577552376588196 + +chr1 17142033 17142044 ZNF384_MA1125.1 9.735035452921970 + +chr1 17431941 17431952 ZNF384_MA1125.1 7.888753740052802 + +chr1 17432093 17432104 ZNF384_MA1125.1 9.745479232359941 + +chr1 17432094 17432105 ZNF384_MA1125.1 10.116167145544971 + +chr1 17432095 17432106 ZNF384_MA1125.1 8.891990122304620 + +chr1 17536313 17536324 ZNF384_MA1125.1 8.762009293646653 + +chr1 17536314 17536325 ZNF384_MA1125.1 8.899489994815731 + +chr1 18902688 18902699 ZNF384_MA1125.1 8.926882789971735 + +chr1 21762266 21762277 ZNF384_MA1125.1 10.933951898971689 + +chr1 21762267 21762278 ZNF384_MA1125.1 9.684835641786123 + +chr1 21762268 21762279 ZNF384_MA1125.1 11.174378123860667 + +chr1 21762269 21762280 ZNF384_MA1125.1 10.693622805983804 + +chr1 21762270 21762281 ZNF384_MA1125.1 9.466330947981877 + +chr1 21762271 21762282 ZNF384_MA1125.1 9.348377887105972 + +chr1 21762422 21762433 ZNF384_MA1125.1 8.179750646623464 + +chr1 21762862 21762873 ZNF384_MA1125.1 10.933951898971689 + +chr1 21762863 21762874 ZNF384_MA1125.1 9.684835641786123 + +chr1 21762864 21762875 ZNF384_MA1125.1 11.174378123860667 + +chr1 21762865 21762876 ZNF384_MA1125.1 10.693622805983804 + +chr1 21762866 21762877 ZNF384_MA1125.1 11.342318221560010 + +chr1 21762867 21762878 ZNF384_MA1125.1 11.342318221560010 + +chr1 21762868 21762879 ZNF384_MA1125.1 11.342318221560010 + +chr1 21762869 21762880 ZNF384_MA1125.1 11.342318221560010 + +chr1 21762870 21762881 ZNF384_MA1125.1 11.342318221560010 + +chr1 21762871 21762882 ZNF384_MA1125.1 11.342318221560010 + +chr1 21762872 21762883 ZNF384_MA1125.1 11.342318221560010 + +chr1 21762873 21762884 ZNF384_MA1125.1 11.342318221560010 + +chr1 21762874 21762885 ZNF384_MA1125.1 11.342318221560010 + +chr1 21762875 21762886 ZNF384_MA1125.1 11.342318221560010 + +chr1 21762876 21762887 ZNF384_MA1125.1 11.342318221560010 + +chr1 21762877 21762888 ZNF384_MA1125.1 11.342318221560010 + +chr1 21762878 21762889 ZNF384_MA1125.1 9.940466811255302 + +chr1 21762879 21762890 ZNF384_MA1125.1 8.418515842085245 + +chr1 22026267 22026278 ZNF384_MA1125.1 8.797869088867142 - +chr1 22026274 22026285 ZNF384_MA1125.1 9.348377887105972 - +chr1 22026275 22026286 ZNF384_MA1125.1 9.466330947981877 - +chr1 22026276 22026287 ZNF384_MA1125.1 11.342318221560006 - +chr1 22026277 22026288 ZNF384_MA1125.1 11.342318221560006 - +chr1 22026278 22026289 ZNF384_MA1125.1 11.342318221560006 - +chr1 22026279 22026290 ZNF384_MA1125.1 10.693622805983800 - +chr1 22026280 22026291 ZNF384_MA1125.1 11.174378123860663 - +chr1 22026281 22026292 ZNF384_MA1125.1 9.684835641786119 - +chr1 22026282 22026293 ZNF384_MA1125.1 10.933951898971685 - +chr1 23825730 23825741 ZNF384_MA1125.1 9.799063064305347 + +chr1 23825731 23825742 ZNF384_MA1125.1 10.160885068638446 + +chr1 23825732 23825743 ZNF384_MA1125.1 10.433066910636464 + +chr1 23825733 23825744 ZNF384_MA1125.1 10.693622805983804 + +chr1 23825734 23825745 ZNF384_MA1125.1 11.342318221560010 + +chr1 23825735 23825746 ZNF384_MA1125.1 11.342318221560010 + +chr1 23825736 23825747 ZNF384_MA1125.1 11.342318221560010 + +chr1 23825737 23825748 ZNF384_MA1125.1 11.342318221560010 + +chr1 23825738 23825749 ZNF384_MA1125.1 11.342318221560010 + +chr1 23825739 23825750 ZNF384_MA1125.1 11.342318221560010 + +chr1 23825740 23825751 ZNF384_MA1125.1 11.342318221560010 + +chr1 23825741 23825752 ZNF384_MA1125.1 11.342318221560010 + +chr1 23825742 23825753 ZNF384_MA1125.1 11.342318221560010 + +chr1 23825743 23825754 ZNF384_MA1125.1 11.342318221560010 + +chr1 23825744 23825755 ZNF384_MA1125.1 11.342318221560010 + +chr1 23825745 23825756 ZNF384_MA1125.1 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24391825 24391836 ZNF384_MA1125.1 10.134842893538430 + +chr1 24391826 24391837 ZNF384_MA1125.1 11.641065880752549 + +chr1 24391827 24391838 ZNF384_MA1125.1 11.439639910232545 + +chr1 24391828 24391839 ZNF384_MA1125.1 10.033082608903300 + +chr1 24391829 24391840 ZNF384_MA1125.1 8.418515842085245 + +chr1 24415953 24415964 ZNF384_MA1125.1 7.847561941527037 - +chr1 24947628 24947639 ZNF384_MA1125.1 8.038551098691118 - +chr1 24965294 24965305 ZNF384_MA1125.1 10.319820058037198 + +chr1 24965295 24965306 ZNF384_MA1125.1 10.631583981668335 + +chr1 24965296 24965307 ZNF384_MA1125.1 10.767977395882752 + +chr1 24965297 24965308 ZNF384_MA1125.1 10.826901385436646 + +chr1 24965298 24965309 ZNF384_MA1125.1 11.342318221560010 + +chr1 24965299 24965310 ZNF384_MA1125.1 11.342318221560010 + +chr1 24965300 24965311 ZNF384_MA1125.1 11.342318221560010 + +chr1 24965301 24965312 ZNF384_MA1125.1 9.466330947981877 + +chr1 24965302 24965313 ZNF384_MA1125.1 9.348377887105972 + +chr1 26865818 26865829 ZNF384_MA1125.1 7.888753740052802 + +chr1 27830662 27830673 ZNF384_MA1125.1 9.837889094734495 + +chr1 27830663 27830674 ZNF384_MA1125.1 9.987594457116668 + +chr1 27830664 27830675 ZNF384_MA1125.1 10.860593193530750 + +chr1 27830665 27830676 ZNF384_MA1125.1 10.826901385436646 + +chr1 27830666 27830677 ZNF384_MA1125.1 11.342318221560010 + +chr1 27830667 27830678 ZNF384_MA1125.1 9.940466811255302 + +chr1 27830668 27830679 ZNF384_MA1125.1 8.257360446803343 + +chr1 27830957 27830968 ZNF384_MA1125.1 9.068078829596715 - +chr1 27830958 27830969 ZNF384_MA1125.1 7.769496448023986 - +chr1 28172882 28172893 ZNF384_MA1125.1 9.742805410274656 + +chr1 28172883 28172894 ZNF384_MA1125.1 11.154634961698752 + +chr1 28172884 28172895 ZNF384_MA1125.1 10.831607276461183 + +chr1 28172885 28172896 ZNF384_MA1125.1 9.558946745629875 + +chr1 28247125 28247136 ZNF384_MA1125.1 7.547885985413675 + +chr1 28329279 28329290 ZNF384_MA1125.1 9.348377887105972 - +chr1 28329280 28329291 ZNF384_MA1125.1 9.466330947981877 - 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ZNF384_MA1125.1 7.946526476801261 - +chr1 28506201 28506212 ZNF384_MA1125.1 9.466330947981877 - +chr1 28506202 28506213 ZNF384_MA1125.1 11.342318221560006 - +chr1 28506203 28506214 ZNF384_MA1125.1 11.342318221560006 - +chr1 28506204 28506215 ZNF384_MA1125.1 11.342318221560006 - +chr1 28506205 28506216 ZNF384_MA1125.1 11.342318221560006 - +chr1 28506206 28506217 ZNF384_MA1125.1 10.693622805983800 - +chr1 28506207 28506218 ZNF384_MA1125.1 11.174378123860663 - +chr1 28506208 28506219 ZNF384_MA1125.1 9.684835641786119 - +chr1 28506209 28506220 ZNF384_MA1125.1 10.933951898971685 - +chr1 28648402 28648413 ZNF384_MA1125.1 8.402551811609122 - +chr1 28648815 28648826 ZNF384_MA1125.1 9.398079745534371 - +chr1 28648816 28648827 ZNF384_MA1125.1 9.779311415973396 - +chr1 28648817 28648828 ZNF384_MA1125.1 11.342318221560006 - +chr1 28648818 28648829 ZNF384_MA1125.1 11.342318221560006 - +chr1 28648819 28648830 ZNF384_MA1125.1 11.342318221560006 - +chr1 28648820 28648831 ZNF384_MA1125.1 11.342318221560006 - +chr1 28648821 28648832 ZNF384_MA1125.1 11.434934019208004 - +chr1 28648822 28648833 ZNF384_MA1125.1 10.698328697008339 - +chr1 28648823 28648834 ZNF384_MA1125.1 11.468419892028665 - +chr1 28648824 28648835 ZNF384_MA1125.1 8.698735381719903 - +chr1 28927367 28927378 ZNF384_MA1125.1 10.132136798175940 + +chr1 28927368 28927379 ZNF384_MA1125.1 8.719021626264800 + +chr1 28927369 28927380 ZNF384_MA1125.1 7.936790814055986 + +chr1 31065265 31065276 ZNF384_MA1125.1 8.577209307516693 + +chr1 32520659 32520670 ZNF384_MA1125.1 8.418515842085245 - +chr1 32520660 32520671 ZNF384_MA1125.1 9.940466811255298 - +chr1 32520661 32520672 ZNF384_MA1125.1 11.342318221560006 - +chr1 32520662 32520673 ZNF384_MA1125.1 11.342318221560006 - +chr1 32520663 32520674 ZNF384_MA1125.1 11.342318221560006 - +chr1 32520664 32520675 ZNF384_MA1125.1 11.342318221560006 - +chr1 32520665 32520676 ZNF384_MA1125.1 11.342318221560006 - +chr1 32520666 32520677 ZNF384_MA1125.1 11.342318221560006 - +chr1 32520667 32520678 ZNF384_MA1125.1 11.342318221560006 - +chr1 32520668 32520679 ZNF384_MA1125.1 11.342318221560006 - +chr1 32520669 32520680 ZNF384_MA1125.1 11.342318221560006 - +chr1 32520670 32520681 ZNF384_MA1125.1 11.342318221560006 - +chr1 32520671 32520682 ZNF384_MA1125.1 11.434934019208004 - +chr1 32520672 32520683 ZNF384_MA1125.1 11.439639910232541 - +chr1 32520673 32520684 ZNF384_MA1125.1 11.733681678400544 - +chr1 32520674 32520685 ZNF384_MA1125.1 10.006270205110123 - +chr1 32520831 32520842 ZNF384_MA1125.1 7.888753740052802 - +chr1 32520840 32520851 ZNF384_MA1125.1 7.913389734749515 - +chr1 32627876 32627887 ZNF384_MA1125.1 9.248408319357086 + +chr1 32627877 32627888 ZNF384_MA1125.1 10.119114911582493 + +chr1 32627884 32627895 ZNF384_MA1125.1 8.480230687915661 + +chr1 32627885 32627896 ZNF384_MA1125.1 8.240568244969264 + +chr1 32992246 32992257 ZNF384_MA1125.1 7.534100092644598 + +chr1 33903242 33903253 ZNF384_MA1125.1 10.319820058037198 + +chr1 33903243 33903254 ZNF384_MA1125.1 8.755596708090202 + +chr1 33903260 33903271 ZNF384_MA1125.1 7.664847342119885 + +chr1 33903333 33903344 ZNF384_MA1125.1 7.785371081519358 - +chr1 33903334 33903345 ZNF384_MA1125.1 9.466330947981877 - +chr1 33903335 33903346 ZNF384_MA1125.1 11.342318221560006 - +chr1 33903336 33903347 ZNF384_MA1125.1 11.342318221560006 - +chr1 33903337 33903348 ZNF384_MA1125.1 11.342318221560006 - +chr1 33903338 33903349 ZNF384_MA1125.1 11.434934019208004 - +chr1 33903339 33903350 ZNF384_MA1125.1 11.439639910232541 - +chr1 33903340 33903351 ZNF384_MA1125.1 11.733681678400544 - +chr1 33903341 33903352 ZNF384_MA1125.1 10.006270205110123 - +chr1 34859976 34859987 ZNF384_MA1125.1 8.701299470801661 - +chr1 36223834 36223845 ZNF384_MA1125.1 9.087252924075184 + +chr1 36223835 36223846 ZNF384_MA1125.1 7.820840131148778 + +chr1 37507821 37507832 ZNF384_MA1125.1 10.482319631962453 + +chr1 37507822 37507833 ZNF384_MA1125.1 10.992370465176343 + +chr1 37507823 37507834 ZNF384_MA1125.1 11.439639910232545 + +chr1 37507824 37507835 ZNF384_MA1125.1 11.434934019208008 + +chr1 37507825 37507836 ZNF384_MA1125.1 11.342318221560010 + +chr1 37507826 37507837 ZNF384_MA1125.1 11.342318221560010 + +chr1 37507827 37507838 ZNF384_MA1125.1 11.342318221560010 + +chr1 37507828 37507839 ZNF384_MA1125.1 11.342318221560010 + +chr1 37507829 37507840 ZNF384_MA1125.1 9.466330947981877 + +chr1 37507830 37507841 ZNF384_MA1125.1 9.348377887105972 + +chr1 37926237 37926248 ZNF384_MA1125.1 8.282452252743777 + +chr1 37926298 37926309 ZNF384_MA1125.1 9.348377887105972 - +chr1 37926299 37926310 ZNF384_MA1125.1 9.466330947981877 - +chr1 37926300 37926311 ZNF384_MA1125.1 10.693622805983800 - +chr1 37926301 37926312 ZNF384_MA1125.1 11.174378123860663 - +chr1 37926302 37926313 ZNF384_MA1125.1 9.684835641786119 - +chr1 37926303 37926314 ZNF384_MA1125.1 10.933951898971685 - +chr1 38028280 38028291 ZNF384_MA1125.1 8.375581582011559 + +chr1 38028300 38028311 ZNF384_MA1125.1 8.231350367694198 + +chr1 38173171 38173182 ZNF384_MA1125.1 10.151879960337855 + +chr1 38173172 38173183 ZNF384_MA1125.1 9.982888566092129 + +chr1 38173173 38173184 ZNF384_MA1125.1 10.767977395882752 + +chr1 38173174 38173185 ZNF384_MA1125.1 10.826901385436646 + +chr1 38173175 38173186 ZNF384_MA1125.1 11.342318221560010 + +chr1 38173176 38173187 ZNF384_MA1125.1 11.342318221560010 + +chr1 38173177 38173188 ZNF384_MA1125.1 11.342318221560010 + +chr1 38173178 38173189 ZNF384_MA1125.1 9.466330947981877 + +chr1 38173179 38173190 ZNF384_MA1125.1 9.348377887105972 + +chr1 39215442 39215453 ZNF384_MA1125.1 7.996228335229662 - +chr1 39215443 39215454 ZNF384_MA1125.1 9.779311415973396 - +chr1 39215444 39215455 ZNF384_MA1125.1 11.342318221560006 - +chr1 39215445 39215456 ZNF384_MA1125.1 11.342318221560006 - +chr1 39215446 39215457 ZNF384_MA1125.1 11.342318221560006 - +chr1 39215447 39215458 ZNF384_MA1125.1 10.693622805983800 - +chr1 39215448 39215459 ZNF384_MA1125.1 10.566345490089301 - +chr1 39215449 39215460 ZNF384_MA1125.1 9.754484340660529 - +chr1 39215450 39215461 ZNF384_MA1125.1 10.097115988611353 - +chr1 39215656 39215667 ZNF384_MA1125.1 8.333184042617258 - +chr1 39215657 39215668 ZNF384_MA1125.1 7.836241163363992 - +chr1 39576231 39576242 ZNF384_MA1125.1 8.114255910586898 + +chr1 39576247 39576258 ZNF384_MA1125.1 8.299850205488813 + +chr1 39576673 39576684 ZNF384_MA1125.1 9.466330947981877 - +chr1 39576674 39576685 ZNF384_MA1125.1 10.826901385436642 - +chr1 39576675 39576686 ZNF384_MA1125.1 10.860593193530747 - +chr1 39576676 39576687 ZNF384_MA1125.1 9.987594457116664 - +chr1 39576677 39576688 ZNF384_MA1125.1 9.704610515281649 - +chr1 39576706 39576717 ZNF384_MA1125.1 8.262066337827880 - +chr1 39576707 39576718 ZNF384_MA1125.1 9.719091743299934 - +chr1 39576708 39576719 ZNF384_MA1125.1 9.781877135816533 - +chr1 39576725 39576736 ZNF384_MA1125.1 8.063302821537039 - +chr1 39598340 39598351 ZNF384_MA1125.1 9.348377887105972 - +chr1 39598341 39598352 ZNF384_MA1125.1 9.466330947981877 - 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ZNF384_MA1125.1 11.342318221560006 - +chr1 39667203 39667214 ZNF384_MA1125.1 11.342318221560006 - +chr1 39667204 39667215 ZNF384_MA1125.1 11.342318221560006 - +chr1 39667205 39667216 ZNF384_MA1125.1 11.342318221560006 - +chr1 39667206 39667217 ZNF384_MA1125.1 10.826901385436642 - +chr1 39667207 39667218 ZNF384_MA1125.1 10.767977395882749 - +chr1 39667208 39667219 ZNF384_MA1125.1 9.982888566092125 - +chr1 39667209 39667220 ZNF384_MA1125.1 10.151879960337851 - +chr1 40186152 40186163 ZNF384_MA1125.1 8.571836087951819 + +chr1 40186153 40186164 ZNF384_MA1125.1 9.696827404726911 + +chr1 40186280 40186291 ZNF384_MA1125.1 10.654965620686333 + +chr1 40186281 40186292 ZNF384_MA1125.1 11.733681678400547 + +chr1 40186282 40186293 ZNF384_MA1125.1 9.563652636654412 + +chr1 40186283 40186294 ZNF384_MA1125.1 8.039142274449258 + +chr1 40699162 40699173 ZNF384_MA1125.1 9.150367648729141 + +chr1 40699163 40699174 ZNF384_MA1125.1 10.160885068638446 + +chr1 40699164 40699175 ZNF384_MA1125.1 8.870060105049854 + +chr1 40699165 40699176 ZNF384_MA1125.1 8.749384329958165 + +chr1 40708957 40708968 ZNF384_MA1125.1 7.731163241211568 - +chr1 41574360 41574371 ZNF384_MA1125.1 8.158912405080734 - +chr1 41623442 41623453 ZNF384_MA1125.1 9.010584445380488 + +chr1 41751323 41751334 ZNF384_MA1125.1 7.944379978811821 - +chr1 41751324 41751335 ZNF384_MA1125.1 9.940466811255298 - +chr1 41751325 41751336 ZNF384_MA1125.1 11.342318221560006 - +chr1 41751326 41751337 ZNF384_MA1125.1 11.342318221560006 - +chr1 41751327 41751338 ZNF384_MA1125.1 11.342318221560006 - +chr1 41751328 41751339 ZNF384_MA1125.1 11.342318221560006 - +chr1 41751329 41751340 ZNF384_MA1125.1 11.342318221560006 - +chr1 41751330 41751341 ZNF384_MA1125.1 11.342318221560006 - +chr1 41751331 41751342 ZNF384_MA1125.1 11.342318221560006 - +chr1 41751332 41751343 ZNF384_MA1125.1 11.342318221560006 - +chr1 41751333 41751344 ZNF384_MA1125.1 11.342318221560006 - +chr1 41751334 41751345 ZNF384_MA1125.1 10.693622805983800 - +chr1 41751335 41751346 ZNF384_MA1125.1 10.566345490089301 - +chr1 41751336 41751347 ZNF384_MA1125.1 9.847100138308527 - +chr1 41751337 41751348 ZNF384_MA1125.1 10.101821879635891 - +chr1 41868524 41868535 ZNF384_MA1125.1 7.884047849028264 - +chr1 42682078 42682089 ZNF384_MA1125.1 7.961901821156360 - +chr1 42931666 42931677 ZNF384_MA1125.1 10.356217961493794 + +chr1 42931667 42931678 ZNF384_MA1125.1 11.636359989728010 + +chr1 42931668 42931679 ZNF384_MA1125.1 11.347024112584547 + +chr1 42931669 42931680 ZNF384_MA1125.1 10.033082608903300 + +chr1 42931670 42931681 ZNF384_MA1125.1 8.418515842085245 + +chr1 42931824 42931835 ZNF384_MA1125.1 10.933951898971689 + +chr1 42931825 42931836 ZNF384_MA1125.1 9.684835641786123 + +chr1 42931826 42931837 ZNF384_MA1125.1 11.174378123860667 + +chr1 42931827 42931838 ZNF384_MA1125.1 10.693622805983804 + +chr1 42931828 42931839 ZNF384_MA1125.1 11.342318221560010 + +chr1 42931829 42931840 ZNF384_MA1125.1 11.342318221560010 + +chr1 42931830 42931841 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45053132 45053143 ZNF384_MA1125.1 11.342318221560010 + +chr1 45053133 45053144 ZNF384_MA1125.1 11.342318221560010 + +chr1 45053134 45053145 ZNF384_MA1125.1 9.466330947981877 + +chr1 45053135 45053146 ZNF384_MA1125.1 9.348377887105972 + +chr1 45394147 45394158 ZNF384_MA1125.1 7.785371081519358 - +chr1 45394148 45394159 ZNF384_MA1125.1 8.817635532405671 - +chr1 45394149 45394160 ZNF384_MA1125.1 11.174378123860663 - +chr1 45394150 45394161 ZNF384_MA1125.1 9.684835641786119 - +chr1 45394151 45394162 ZNF384_MA1125.1 10.933951898971685 - +chr1 45394322 45394333 ZNF384_MA1125.1 7.785371081519358 - +chr1 45394323 45394334 ZNF384_MA1125.1 9.466330947981877 - +chr1 45394324 45394335 ZNF384_MA1125.1 11.342318221560006 - +chr1 45394325 45394336 ZNF384_MA1125.1 11.342318221560006 - +chr1 45394326 45394337 ZNF384_MA1125.1 11.342318221560006 - +chr1 45394327 45394338 ZNF384_MA1125.1 11.342318221560006 - +chr1 45394328 45394339 ZNF384_MA1125.1 11.342318221560006 - +chr1 45394329 45394340 ZNF384_MA1125.1 11.342318221560006 - +chr1 45394330 45394341 ZNF384_MA1125.1 11.342318221560006 - +chr1 45394331 45394342 ZNF384_MA1125.1 11.342318221560006 - +chr1 45394332 45394343 ZNF384_MA1125.1 11.342318221560006 - +chr1 45394333 45394344 ZNF384_MA1125.1 11.342318221560006 - +chr1 45394334 45394345 ZNF384_MA1125.1 10.693622805983800 - +chr1 45394335 45394346 ZNF384_MA1125.1 10.433066910636461 - +chr1 45394336 45394347 ZNF384_MA1125.1 10.068269270990445 - +chr1 45394337 45394348 ZNF384_MA1125.1 9.886972970928802 - +chr1 45394678 45394689 ZNF384_MA1125.1 9.348377887105972 - +chr1 45394679 45394690 ZNF384_MA1125.1 9.466330947981877 - +chr1 45394680 45394691 ZNF384_MA1125.1 11.342318221560006 - +chr1 45394681 45394692 ZNF384_MA1125.1 11.342318221560006 - +chr1 45394682 45394693 ZNF384_MA1125.1 11.342318221560006 - +chr1 45394683 45394694 ZNF384_MA1125.1 11.342318221560006 - +chr1 45394684 45394695 ZNF384_MA1125.1 11.342318221560006 - +chr1 45394685 45394696 ZNF384_MA1125.1 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51505131 ZNF384_MA1125.1 11.342318221560010 + +chr1 51505121 51505132 ZNF384_MA1125.1 11.342318221560010 + +chr1 51505122 51505133 ZNF384_MA1125.1 9.940466811255302 + +chr1 51505123 51505134 ZNF384_MA1125.1 8.257360446803343 + +chr1 52055206 52055217 ZNF384_MA1125.1 8.257360446803343 - +chr1 52055207 52055218 ZNF384_MA1125.1 9.940466811255298 - +chr1 52055208 52055219 ZNF384_MA1125.1 10.826901385436642 - +chr1 52055209 52055220 ZNF384_MA1125.1 10.860593193530747 - +chr1 52055210 52055221 ZNF384_MA1125.1 10.728905670340868 - +chr1 52055211 52055222 ZNF384_MA1125.1 10.711183514877732 - +chr1 52637580 52637591 ZNF384_MA1125.1 8.469085272448909 - +chr1 52637581 52637592 ZNF384_MA1125.1 7.914536818316163 - +chr1 52697738 52697749 ZNF384_MA1125.1 7.888753740052802 - +chr1 54489314 54489325 ZNF384_MA1125.1 8.704599511480188 + +chr1 54489315 54489326 ZNF384_MA1125.1 9.552852434867084 + +chr1 54489316 54489327 ZNF384_MA1125.1 10.433066910636464 + +chr1 54489317 54489328 ZNF384_MA1125.1 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ZNF384_MA1125.1 10.239214470447838 - +chr1 57546993 57547004 ZNF384_MA1125.1 10.001564314085584 - +chr1 58815739 58815750 ZNF384_MA1125.1 8.120923752629389 + +chr1 58815992 58816003 ZNF384_MA1125.1 8.443215441458936 + +chr1 58968803 58968814 ZNF384_MA1125.1 10.319820058037198 + +chr1 58968804 58968815 ZNF384_MA1125.1 10.631583981668335 + +chr1 58968805 58968816 ZNF384_MA1125.1 10.767977395882752 + +chr1 58968806 58968817 ZNF384_MA1125.1 10.826901385436646 + +chr1 58968807 58968818 ZNF384_MA1125.1 11.342318221560010 + +chr1 58968808 58968819 ZNF384_MA1125.1 11.342318221560010 + +chr1 58968809 58968820 ZNF384_MA1125.1 11.342318221560010 + +chr1 58968810 58968821 ZNF384_MA1125.1 11.342318221560010 + +chr1 58968811 58968822 ZNF384_MA1125.1 11.342318221560010 + +chr1 58968812 58968823 ZNF384_MA1125.1 11.342318221560010 + +chr1 58968813 58968824 ZNF384_MA1125.1 11.342318221560010 + +chr1 58968814 58968825 ZNF384_MA1125.1 11.342318221560010 + +chr1 58968815 58968826 ZNF384_MA1125.1 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62122368 62122379 ZNF384_MA1125.1 11.342318221560010 + +chr1 62122369 62122380 ZNF384_MA1125.1 11.342318221560010 + +chr1 62122370 62122381 ZNF384_MA1125.1 11.342318221560010 + +chr1 62122371 62122382 ZNF384_MA1125.1 11.342318221560010 + +chr1 62122372 62122383 ZNF384_MA1125.1 11.342318221560010 + +chr1 62122373 62122384 ZNF384_MA1125.1 11.342318221560010 + +chr1 62122374 62122385 ZNF384_MA1125.1 11.342318221560010 + +chr1 62122375 62122386 ZNF384_MA1125.1 9.779311415973400 + +chr1 62122376 62122387 ZNF384_MA1125.1 7.835072939947760 + +chr1 62436505 62436516 ZNF384_MA1125.1 8.195791451805313 - +chr1 62436727 62436738 ZNF384_MA1125.1 7.684514794283041 + +chr1 62613537 62613548 ZNF384_MA1125.1 8.484319235940070 - +chr1 62784631 62784642 ZNF384_MA1125.1 8.617597815392912 + +chr1 62784638 62784649 ZNF384_MA1125.1 8.480230687915661 + +chr1 62784639 62784650 ZNF384_MA1125.1 7.766432381695838 + +chr1 62800671 62800682 ZNF384_MA1125.1 10.075918903984538 + +chr1 62800672 62800683 ZNF384_MA1125.1 11.125649044629185 + +chr1 62800673 62800684 ZNF384_MA1125.1 10.037788499927837 + +chr1 62800674 62800685 ZNF384_MA1125.1 8.511131639733243 + +chr1 62801220 62801231 ZNF384_MA1125.1 10.807850228503028 + +chr1 62801221 62801232 ZNF384_MA1125.1 8.765818360751176 + +chr1 62801222 62801233 ZNF384_MA1125.1 9.137523850187030 + +chr1 62810710 62810721 ZNF384_MA1125.1 9.398079745534371 - +chr1 62810711 62810722 ZNF384_MA1125.1 9.779311415973396 - +chr1 62810712 62810723 ZNF384_MA1125.1 11.342318221560006 - +chr1 62810713 62810724 ZNF384_MA1125.1 11.342318221560006 - +chr1 62810714 62810725 ZNF384_MA1125.1 11.342318221560006 - +chr1 62810715 62810726 ZNF384_MA1125.1 11.342318221560006 - +chr1 62810716 62810727 ZNF384_MA1125.1 10.826901385436642 - +chr1 62810717 62810728 ZNF384_MA1125.1 10.767977395882749 - +chr1 62810718 62810729 ZNF384_MA1125.1 10.631583981668332 - +chr1 62810719 62810730 ZNF384_MA1125.1 10.319820058037195 - +chr1 62810952 62810963 ZNF384_MA1125.1 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65067785 65067796 ZNF384_MA1125.1 11.342318221560010 + +chr1 65067786 65067797 ZNF384_MA1125.1 11.342318221560010 + +chr1 65067787 65067798 ZNF384_MA1125.1 11.342318221560010 + +chr1 65067788 65067799 ZNF384_MA1125.1 11.342318221560010 + +chr1 65067789 65067800 ZNF384_MA1125.1 11.342318221560010 + +chr1 65067790 65067801 ZNF384_MA1125.1 11.342318221560010 + +chr1 65067791 65067802 ZNF384_MA1125.1 9.779311415973400 + +chr1 65067792 65067803 ZNF384_MA1125.1 7.996228335229663 + +chr1 65068589 65068600 ZNF384_MA1125.1 9.837889094734495 + +chr1 65068590 65068601 ZNF384_MA1125.1 9.987594457116668 + +chr1 65068591 65068602 ZNF384_MA1125.1 9.458741783226042 + +chr1 65068592 65068603 ZNF384_MA1125.1 9.304950416266589 + +chr1 65068714 65068725 ZNF384_MA1125.1 7.835072939947759 - +chr1 65068715 65068726 ZNF384_MA1125.1 9.779311415973396 - +chr1 65068716 65068727 ZNF384_MA1125.1 11.342318221560006 - +chr1 65068717 65068728 ZNF384_MA1125.1 11.342318221560006 - +chr1 65068718 65068729 ZNF384_MA1125.1 10.826901385436642 - +chr1 65068719 65068730 ZNF384_MA1125.1 10.252560559759385 - +chr1 65068720 65068731 ZNF384_MA1125.1 10.057243155991076 - +chr1 65068721 65068732 ZNF384_MA1125.1 9.093668982022155 - +chr1 65393635 65393646 ZNF384_MA1125.1 7.535209193885104 - +chr1 65393814 65393825 ZNF384_MA1125.1 8.139974909563003 - +chr1 65393815 65393826 ZNF384_MA1125.1 8.519328156344899 - +chr1 66247903 66247914 ZNF384_MA1125.1 8.339157008433540 + +chr1 66247904 66247915 ZNF384_MA1125.1 8.068568085701578 + +chr1 66283565 66283576 ZNF384_MA1125.1 7.823779038859565 + +chr1 66283611 66283622 ZNF384_MA1125.1 7.844175016407988 - +chr1 66283612 66283623 ZNF384_MA1125.1 8.714315735240259 - +chr1 66283613 66283624 ZNF384_MA1125.1 9.745479232359937 - +chr1 66301189 66301200 ZNF384_MA1125.1 7.639242004559664 - +chr1 66301190 66301201 ZNF384_MA1125.1 8.922674538757024 - +chr1 66336650 66336661 ZNF384_MA1125.1 8.039142274449258 - +chr1 66336651 66336662 ZNF384_MA1125.1 8.822341423430210 - 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ZNF384_MA1125.1 11.342318221560010 + +chr1 66380316 66380327 ZNF384_MA1125.1 11.342318221560010 + +chr1 66380317 66380328 ZNF384_MA1125.1 11.342318221560010 + +chr1 66380318 66380329 ZNF384_MA1125.1 11.342318221560010 + +chr1 66380319 66380330 ZNF384_MA1125.1 11.342318221560010 + +chr1 66380320 66380331 ZNF384_MA1125.1 11.342318221560010 + +chr1 66380321 66380332 ZNF384_MA1125.1 11.342318221560010 + +chr1 66380322 66380333 ZNF384_MA1125.1 11.342318221560010 + +chr1 66380323 66380334 ZNF384_MA1125.1 11.342318221560010 + +chr1 66380324 66380335 ZNF384_MA1125.1 11.342318221560010 + +chr1 66380325 66380336 ZNF384_MA1125.1 11.342318221560010 + +chr1 66380326 66380337 ZNF384_MA1125.1 11.342318221560010 + +chr1 66380327 66380338 ZNF384_MA1125.1 9.466330947981877 + +chr1 66380328 66380339 ZNF384_MA1125.1 7.946526476801261 + +chr1 66380972 66380983 ZNF384_MA1125.1 8.569934454927724 + +chr1 66380973 66380984 ZNF384_MA1125.1 7.993654122662628 + +chr1 66649029 66649040 ZNF384_MA1125.1 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67112534 67112545 ZNF384_MA1125.1 11.468419892028669 + +chr1 67112535 67112546 ZNF384_MA1125.1 8.822341423430210 + +chr1 67112536 67112547 ZNF384_MA1125.1 8.039142274449258 + +chr1 67166263 67166274 ZNF384_MA1125.1 9.001494197050452 + +chr1 67166264 67166275 ZNF384_MA1125.1 11.154634961698752 + +chr1 67166265 67166276 ZNF384_MA1125.1 8.955620002883050 + +chr1 67166266 67166277 ZNF384_MA1125.1 8.039142274449258 + +chr1 67214361 67214372 ZNF384_MA1125.1 9.189329641267495 + +chr1 67214777 67214788 ZNF384_MA1125.1 10.207024818205952 - +chr1 67214778 67214789 ZNF384_MA1125.1 8.443655606090255 - +chr1 67214803 67214814 ZNF384_MA1125.1 8.468197379659557 + +chr1 67333202 67333213 ZNF384_MA1125.1 7.751538897905903 - +chr1 67333306 67333317 ZNF384_MA1125.1 8.515837530757780 - +chr1 67333307 67333318 ZNF384_MA1125.1 9.723797634324473 - +chr1 67333308 67333319 ZNF384_MA1125.1 10.168534701632533 - +chr1 67333366 67333377 ZNF384_MA1125.1 10.654965620686333 + +chr1 67333367 67333378 ZNF384_MA1125.1 10.331830268095837 + +chr1 67333368 67333379 ZNF384_MA1125.1 8.515837530757780 + +chr1 67333388 67333399 ZNF384_MA1125.1 7.785371081519358 - +chr1 67333389 67333400 ZNF384_MA1125.1 9.466330947981877 - +chr1 67333390 67333401 ZNF384_MA1125.1 11.342318221560006 - +chr1 67333391 67333402 ZNF384_MA1125.1 11.342318221560006 - +chr1 67333392 67333403 ZNF384_MA1125.1 11.342318221560006 - +chr1 67333393 67333404 ZNF384_MA1125.1 11.342318221560006 - +chr1 67333394 67333405 ZNF384_MA1125.1 11.342318221560006 - +chr1 67333395 67333406 ZNF384_MA1125.1 11.342318221560006 - +chr1 67333396 67333407 ZNF384_MA1125.1 11.342318221560006 - +chr1 67333397 67333408 ZNF384_MA1125.1 11.434934019208004 - +chr1 67333398 67333409 ZNF384_MA1125.1 10.698328697008339 - +chr1 67333399 67333410 ZNF384_MA1125.1 10.727108678804461 - +chr1 67333400 67333411 ZNF384_MA1125.1 9.082169010924229 - +chr1 67430182 67430193 ZNF384_MA1125.1 7.677184308006954 - +chr1 67760403 67760414 ZNF384_MA1125.1 8.575165019441300 - +chr1 67766604 67766615 ZNF384_MA1125.1 9.398079745534371 - +chr1 67766605 67766616 ZNF384_MA1125.1 9.779311415973396 - +chr1 67766606 67766617 ZNF384_MA1125.1 11.342318221560006 - +chr1 67766607 67766618 ZNF384_MA1125.1 11.342318221560006 - +chr1 67766608 67766619 ZNF384_MA1125.1 11.342318221560006 - +chr1 67766609 67766620 ZNF384_MA1125.1 11.342318221560006 - +chr1 67766610 67766621 ZNF384_MA1125.1 11.342318221560006 - +chr1 67766611 67766622 ZNF384_MA1125.1 10.826901385436642 - +chr1 67766612 67766623 ZNF384_MA1125.1 10.252560559759385 - +chr1 67766613 67766624 ZNF384_MA1125.1 10.149858953639074 - +chr1 67766614 67766625 ZNF384_MA1125.1 8.965096293593852 - +chr1 68181123 68181134 ZNF384_MA1125.1 7.594432222428154 - +chr1 68181124 68181135 ZNF384_MA1125.1 8.987852424009743 - +chr1 68181243 68181254 ZNF384_MA1125.1 9.405998818198320 + +chr1 68181244 68181255 ZNF384_MA1125.1 8.806874197167733 + +chr1 68181526 68181537 ZNF384_MA1125.1 7.823779038859565 + +chr1 68347508 68347519 ZNF384_MA1125.1 9.405998818198317 - +chr1 68347692 68347703 ZNF384_MA1125.1 9.345730008029621 + +chr1 68347693 68347704 ZNF384_MA1125.1 8.809879298925782 + +chr1 68496211 68496222 ZNF384_MA1125.1 8.062031729084488 + +chr1 70133220 70133231 ZNF384_MA1125.1 8.863611752477389 - +chr1 70221155 70221166 ZNF384_MA1125.1 8.176734538359893 - +chr1 70221156 70221167 ZNF384_MA1125.1 8.871594144756196 - +chr1 70221160 70221171 ZNF384_MA1125.1 10.747581418334331 + +chr1 70221161 70221172 ZNF384_MA1125.1 11.733681678400547 + +chr1 70221162 70221173 ZNF384_MA1125.1 9.563652636654412 + +chr1 70221163 70221174 ZNF384_MA1125.1 8.039142274449258 + +chr1 70221195 70221206 ZNF384_MA1125.1 9.891678861953345 + +chr1 70221196 70221207 ZNF384_MA1125.1 10.160885068638446 + +chr1 70221197 70221208 ZNF384_MA1125.1 10.433066910636464 + +chr1 70221198 70221209 ZNF384_MA1125.1 8.817635532405671 + +chr1 70221199 70221210 ZNF384_MA1125.1 9.348377887105972 + +chr1 70359248 70359259 ZNF384_MA1125.1 9.946468922858612 + 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74858014 ZNF384_MA1125.1 8.965096293593856 + +chr1 74858004 74858015 ZNF384_MA1125.1 8.748007543334367 + +chr1 75339307 75339318 ZNF384_MA1125.1 8.719021626264798 - +chr1 75339308 75339319 ZNF384_MA1125.1 10.039521000527939 - +chr1 75745320 75745331 ZNF384_MA1125.1 8.641909734781304 + +chr1 75745331 75745342 ZNF384_MA1125.1 7.884047849028265 + +chr1 75745481 75745492 ZNF384_MA1125.1 8.832013961172747 + +chr1 75745482 75745493 ZNF384_MA1125.1 11.468419892028669 + +chr1 75745483 75745494 ZNF384_MA1125.1 10.698328697008343 + +chr1 75745484 75745495 ZNF384_MA1125.1 11.434934019208008 + +chr1 75745485 75745496 ZNF384_MA1125.1 9.466330947981877 + +chr1 75745486 75745497 ZNF384_MA1125.1 7.946526476801261 + +chr1 75784613 75784624 ZNF384_MA1125.1 9.133014651516277 + +chr1 75784719 75784730 ZNF384_MA1125.1 8.162884672616064 - +chr1 75784720 75784731 ZNF384_MA1125.1 9.532100488666977 - +chr1 75785184 75785195 ZNF384_MA1125.1 7.888753740052802 - +chr1 75786560 75786571 ZNF384_MA1125.1 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ZNF384_MA1125.1 11.342318221560010 + +chr1 76270513 76270524 ZNF384_MA1125.1 11.342318221560010 + +chr1 76270514 76270525 ZNF384_MA1125.1 11.342318221560010 + +chr1 76270515 76270526 ZNF384_MA1125.1 11.342318221560010 + +chr1 76270516 76270527 ZNF384_MA1125.1 11.342318221560010 + +chr1 76270517 76270528 ZNF384_MA1125.1 11.342318221560010 + +chr1 76270518 76270529 ZNF384_MA1125.1 11.342318221560010 + +chr1 76270519 76270530 ZNF384_MA1125.1 11.342318221560010 + +chr1 76270520 76270531 ZNF384_MA1125.1 11.342318221560010 + +chr1 76270521 76270532 ZNF384_MA1125.1 11.342318221560010 + +chr1 76270522 76270533 ZNF384_MA1125.1 11.342318221560010 + +chr1 76270523 76270534 ZNF384_MA1125.1 9.466330947981877 + +chr1 76270524 76270535 ZNF384_MA1125.1 7.946526476801261 + +chr1 76294690 76294701 ZNF384_MA1125.1 9.003338684502690 - +chr1 76294691 76294702 ZNF384_MA1125.1 9.847100138308527 - +chr1 76294692 76294703 ZNF384_MA1125.1 10.101821879635891 - +chr1 76331252 76331263 ZNF384_MA1125.1 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77770294 ZNF384_MA1125.1 11.174378123860667 + +chr1 77770284 77770295 ZNF384_MA1125.1 10.693622805983804 + +chr1 77770285 77770296 ZNF384_MA1125.1 11.342318221560010 + +chr1 77770286 77770297 ZNF384_MA1125.1 11.342318221560010 + +chr1 77770287 77770298 ZNF384_MA1125.1 11.342318221560010 + +chr1 77770288 77770299 ZNF384_MA1125.1 9.466330947981877 + +chr1 77770289 77770300 ZNF384_MA1125.1 9.348377887105972 + +chr1 77770887 77770898 ZNF384_MA1125.1 7.996228335229662 - +chr1 77770888 77770899 ZNF384_MA1125.1 9.779311415973396 - +chr1 77770889 77770900 ZNF384_MA1125.1 11.342318221560006 - +chr1 77770890 77770901 ZNF384_MA1125.1 10.826901385436642 - +chr1 77770891 77770902 ZNF384_MA1125.1 10.119281980306544 - +chr1 77770892 77770903 ZNF384_MA1125.1 10.463643883968990 - +chr1 77770893 77770904 ZNF384_MA1125.1 8.662337478263307 - +chr1 77927269 77927280 ZNF384_MA1125.1 10.933951898971689 + +chr1 77927270 77927281 ZNF384_MA1125.1 9.684835641786123 + +chr1 77927271 77927282 ZNF384_MA1125.1 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ZNF384_MA1125.1 8.257360446803343 - +chr1 78620251 78620262 ZNF384_MA1125.1 9.425049975131934 - +chr1 78620252 78620263 ZNF384_MA1125.1 10.767977395882749 - +chr1 78620253 78620264 ZNF384_MA1125.1 10.631583981668332 - +chr1 78620254 78620265 ZNF384_MA1125.1 10.319820058037195 - +chr1 78620324 78620335 ZNF384_MA1125.1 7.885413767448537 - +chr1 78620415 78620426 ZNF384_MA1125.1 7.885413767448537 - +chr1 78650005 78650016 ZNF384_MA1125.1 8.710727144660694 + +chr1 78650045 78650056 ZNF384_MA1125.1 8.695264578306645 - +chr1 78650142 78650153 ZNF384_MA1125.1 8.798637051284153 - +chr1 78854846 78854857 ZNF384_MA1125.1 9.598992184434589 - +chr1 78854847 78854858 ZNF384_MA1125.1 7.731330309935620 - +chr1 79040787 79040798 ZNF384_MA1125.1 9.874492933464534 + +chr1 79040788 79040799 ZNF384_MA1125.1 9.244955880026513 + +chr1 79040789 79040800 ZNF384_MA1125.1 7.951232367825798 + +chr1 79052907 79052918 ZNF384_MA1125.1 8.750028550033143 - +chr1 79193409 79193420 ZNF384_MA1125.1 8.012329870656087 - 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ZNF384_MA1125.1 9.684835641786123 + +chr1 79468778 79468789 ZNF384_MA1125.1 11.174378123860667 + +chr1 79468779 79468790 ZNF384_MA1125.1 10.693622805983804 + +chr1 79468780 79468791 ZNF384_MA1125.1 11.342318221560010 + +chr1 79468781 79468792 ZNF384_MA1125.1 11.342318221560010 + +chr1 79468782 79468793 ZNF384_MA1125.1 11.342318221560010 + +chr1 79468783 79468794 ZNF384_MA1125.1 11.342318221560010 + +chr1 79468784 79468795 ZNF384_MA1125.1 11.342318221560010 + +chr1 79468785 79468796 ZNF384_MA1125.1 11.342318221560010 + +chr1 79468786 79468797 ZNF384_MA1125.1 11.342318221560010 + +chr1 79468787 79468798 ZNF384_MA1125.1 11.342318221560010 + +chr1 79468788 79468799 ZNF384_MA1125.1 11.342318221560010 + +chr1 79468789 79468800 ZNF384_MA1125.1 11.342318221560010 + +chr1 79468790 79468801 ZNF384_MA1125.1 11.342318221560010 + +chr1 79468791 79468802 ZNF384_MA1125.1 11.342318221560010 + +chr1 79468792 79468803 ZNF384_MA1125.1 11.342318221560010 + +chr1 79468793 79468804 ZNF384_MA1125.1 9.466330947981877 + +chr1 79468794 79468805 ZNF384_MA1125.1 9.348377887105972 + +chr1 79468919 79468930 ZNF384_MA1125.1 8.362277627039756 + +chr1 79472351 79472362 ZNF384_MA1125.1 10.325919265200326 + +chr1 79472352 79472363 ZNF384_MA1125.1 8.282984231481411 + +chr1 79472353 79472364 ZNF384_MA1125.1 8.250575744385902 + +chr1 79694289 79694300 ZNF384_MA1125.1 10.453539650166329 + +chr1 79694290 79694301 ZNF384_MA1125.1 10.327124377071300 + +chr1 79694291 79694302 ZNF384_MA1125.1 9.825073143414491 + +chr1 79742526 79742537 ZNF384_MA1125.1 8.606332358384320 + +chr1 79742527 79742538 ZNF384_MA1125.1 7.596578720417594 + +chr1 80640126 80640137 ZNF384_MA1125.1 9.707522545917588 + +chr1 80640127 80640138 ZNF384_MA1125.1 10.234508579423302 + +chr1 80640128 80640139 ZNF384_MA1125.1 8.262066337827880 + +chr1 80656292 80656303 ZNF384_MA1125.1 7.844154695553900 + +chr1 80656337 80656348 ZNF384_MA1125.1 8.140902559084392 + +chr1 81505737 81505748 ZNF384_MA1125.1 9.453126464059689 + +chr1 81505738 81505749 ZNF384_MA1125.1 9.847100138308530 + +chr1 81505739 81505750 ZNF384_MA1125.1 10.566345490089304 + +chr1 81505740 81505751 ZNF384_MA1125.1 10.693622805983804 + +chr1 81505741 81505752 ZNF384_MA1125.1 11.342318221560010 + +chr1 81505742 81505753 ZNF384_MA1125.1 11.342318221560010 + +chr1 81505743 81505754 ZNF384_MA1125.1 11.342318221560010 + +chr1 81505744 81505755 ZNF384_MA1125.1 11.342318221560010 + +chr1 81505745 81505756 ZNF384_MA1125.1 11.342318221560010 + +chr1 81505746 81505757 ZNF384_MA1125.1 11.342318221560010 + +chr1 81505747 81505758 ZNF384_MA1125.1 11.342318221560010 + +chr1 81505748 81505759 ZNF384_MA1125.1 11.342318221560010 + +chr1 81505749 81505760 ZNF384_MA1125.1 11.342318221560010 + +chr1 81505750 81505761 ZNF384_MA1125.1 11.342318221560010 + +chr1 81505751 81505762 ZNF384_MA1125.1 11.342318221560010 + +chr1 81505752 81505763 ZNF384_MA1125.1 11.342318221560010 + +chr1 81505753 81505764 ZNF384_MA1125.1 9.940466811255302 + +chr1 81505754 81505765 ZNF384_MA1125.1 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82153022 ZNF384_MA1125.1 9.425049975131937 + +chr1 82153012 82153023 ZNF384_MA1125.1 9.820367252389953 + +chr1 83131420 83131431 ZNF384_MA1125.1 7.741943610679977 - +chr1 83131421 83131432 ZNF384_MA1125.1 9.366125985578041 - +chr1 83131422 83131433 ZNF384_MA1125.1 10.116167145544967 - +chr1 83131423 83131434 ZNF384_MA1125.1 9.745479232359937 - +chr1 83131466 83131477 ZNF384_MA1125.1 8.273979123180823 + +chr1 83406134 83406145 ZNF384_MA1125.1 7.823779038859565 + +chr1 83485695 83485706 ZNF384_MA1125.1 9.046982348837084 + +chr1 83485696 83485707 ZNF384_MA1125.1 8.551402214971343 + +chr1 83487899 83487910 ZNF384_MA1125.1 8.637203843756765 - +chr1 83500523 83500534 ZNF384_MA1125.1 7.823779038859564 - +chr1 83508670 83508681 ZNF384_MA1125.1 10.233509402825772 + +chr1 83508671 83508682 ZNF384_MA1125.1 9.813408330214425 + +chr1 83508672 83508683 ZNF384_MA1125.1 11.081762326212669 + +chr1 83508673 83508684 ZNF384_MA1125.1 8.817635532405671 + +chr1 83508674 83508685 ZNF384_MA1125.1 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84863078 ZNF384_MA1125.1 9.794357173280805 - +chr1 84945636 84945647 ZNF384_MA1125.1 8.411979485468155 + +chr1 84945737 84945748 ZNF384_MA1125.1 8.712557610253246 - +chr1 84945738 84945749 ZNF384_MA1125.1 8.954366551189082 - +chr1 84995798 84995809 ZNF384_MA1125.1 10.211730709230491 - +chr1 84995799 84995810 ZNF384_MA1125.1 9.345730008029619 - +chr1 84995803 84995814 ZNF384_MA1125.1 10.747581418334331 + +chr1 84995804 84995815 ZNF384_MA1125.1 11.733681678400547 + +chr1 84995805 84995816 ZNF384_MA1125.1 9.876633104645935 + +chr1 84995806 84995817 ZNF384_MA1125.1 9.490695543182369 + +chr1 85148732 85148743 ZNF384_MA1125.1 7.835072939947759 - +chr1 85148733 85148744 ZNF384_MA1125.1 9.779311415973396 - +chr1 85148734 85148745 ZNF384_MA1125.1 11.342318221560006 - +chr1 85148735 85148746 ZNF384_MA1125.1 11.342318221560006 - +chr1 85148736 85148747 ZNF384_MA1125.1 11.342318221560006 - +chr1 85148737 85148748 ZNF384_MA1125.1 11.342318221560006 - +chr1 85148738 85148749 ZNF384_MA1125.1 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ZNF384_MA1125.1 8.484936578940198 + +chr1 86396087 86396098 ZNF384_MA1125.1 7.859048179343835 + +chr1 86396475 86396486 ZNF384_MA1125.1 8.036995776459818 - +chr1 86396476 86396487 ZNF384_MA1125.1 10.037788499927833 - +chr1 86396477 86396488 ZNF384_MA1125.1 10.992370465176339 - +chr1 86396478 86396489 ZNF384_MA1125.1 9.874286998191087 - +chr1 86396550 86396561 ZNF384_MA1125.1 7.799843259907396 + +chr1 86419586 86419597 ZNF384_MA1125.1 8.770482423209607 + +chr1 86502640 86502651 ZNF384_MA1125.1 9.225630449164274 - +chr1 86755630 86755641 ZNF384_MA1125.1 10.807850228503028 + +chr1 86755631 86755642 ZNF384_MA1125.1 10.328825166337790 + +chr1 86755632 86755643 ZNF384_MA1125.1 11.081762326212669 + +chr1 86755633 86755644 ZNF384_MA1125.1 10.693622805983804 + +chr1 86755634 86755645 ZNF384_MA1125.1 11.342318221560010 + +chr1 86755635 86755646 ZNF384_MA1125.1 9.779311415973400 + +chr1 86755636 86755647 ZNF384_MA1125.1 9.398079745534371 + +chr1 86774148 86774159 ZNF384_MA1125.1 8.057325838059951 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ZNF384_MA1125.1 11.733681678400544 - +chr1 87057574 87057585 ZNF384_MA1125.1 10.006270205110123 - +chr1 87057692 87057703 ZNF384_MA1125.1 7.888753740052802 + +chr1 87057847 87057858 ZNF384_MA1125.1 9.057964625393556 + +chr1 87057848 87057859 ZNF384_MA1125.1 7.690895307332082 + +chr1 87057867 87057878 ZNF384_MA1125.1 9.745479232359941 + +chr1 87057868 87057879 ZNF384_MA1125.1 8.553160339958360 + +chr1 87057882 87057893 ZNF384_MA1125.1 8.711558433655716 - +chr1 87329066 87329077 ZNF384_MA1125.1 10.654965620686333 + +chr1 87329067 87329078 ZNF384_MA1125.1 11.733681678400547 + +chr1 87329068 87329079 ZNF384_MA1125.1 11.439639910232545 + +chr1 87329069 87329080 ZNF384_MA1125.1 11.434934019208008 + +chr1 87329070 87329081 ZNF384_MA1125.1 11.342318221560010 + +chr1 87329071 87329082 ZNF384_MA1125.1 11.342318221560010 + +chr1 87329072 87329083 ZNF384_MA1125.1 11.342318221560010 + +chr1 87329073 87329084 ZNF384_MA1125.1 11.342318221560010 + +chr1 87329074 87329085 ZNF384_MA1125.1 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87813536 ZNF384_MA1125.1 10.650259729661794 + +chr1 87813526 87813537 ZNF384_MA1125.1 11.641065880752549 + +chr1 87813527 87813538 ZNF384_MA1125.1 10.037788499927837 + +chr1 87813528 87813539 ZNF384_MA1125.1 9.912983050037951 + +chr1 88401244 88401255 ZNF384_MA1125.1 10.319820058037198 + +chr1 88401245 88401256 ZNF384_MA1125.1 10.631583981668335 + +chr1 88401246 88401257 ZNF384_MA1125.1 8.891990122304620 + +chr1 88683881 88683892 ZNF384_MA1125.1 9.127360790116265 + +chr1 88683882 88683893 ZNF384_MA1125.1 9.541826319867715 + +chr1 88683883 88683894 ZNF384_MA1125.1 10.252560559759388 + +chr1 88683884 88683895 ZNF384_MA1125.1 10.826901385436646 + +chr1 88683885 88683896 ZNF384_MA1125.1 11.342318221560010 + +chr1 88683886 88683897 ZNF384_MA1125.1 9.466330947981877 + +chr1 88683887 88683898 ZNF384_MA1125.1 9.348377887105972 + +chr1 88683898 88683909 ZNF384_MA1125.1 10.319820058037198 + +chr1 88683899 88683910 ZNF384_MA1125.1 10.631583981668335 + +chr1 88683900 88683911 ZNF384_MA1125.1 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91166143 91166154 ZNF384_MA1125.1 9.946468922858612 - +chr1 91166144 91166155 ZNF384_MA1125.1 8.038195184639397 - +chr1 91500688 91500699 ZNF384_MA1125.1 8.538081155936814 - +chr1 91752434 91752445 ZNF384_MA1125.1 8.273979123180823 + +chr1 91752435 91752446 ZNF384_MA1125.1 9.202248810146276 + +chr1 91803835 91803846 ZNF384_MA1125.1 9.184526654683140 - +chr1 91804179 91804190 ZNF384_MA1125.1 9.543847326566492 + +chr1 91804180 91804191 ZNF384_MA1125.1 9.982888566092129 + +chr1 91804181 91804192 ZNF384_MA1125.1 10.767977395882752 + +chr1 91804182 91804193 ZNF384_MA1125.1 9.263894579850035 + +chr1 91804183 91804194 ZNF384_MA1125.1 9.398079745534371 + +chr1 92486097 92486108 ZNF384_MA1125.1 10.389703834314455 + +chr1 92486098 92486109 ZNF384_MA1125.1 10.992370465176343 + +chr1 92486099 92486110 ZNF384_MA1125.1 11.439639910232545 + +chr1 92486100 92486111 ZNF384_MA1125.1 11.434934019208008 + +chr1 92486101 92486112 ZNF384_MA1125.1 11.342318221560010 + +chr1 92486102 92486113 ZNF384_MA1125.1 11.342318221560010 + +chr1 92486103 92486114 ZNF384_MA1125.1 11.342318221560010 + +chr1 92486104 92486115 ZNF384_MA1125.1 9.940466811255302 + +chr1 92486105 92486116 ZNF384_MA1125.1 8.418515842085245 + +chr1 92537143 92537154 ZNF384_MA1125.1 9.145661757704602 + +chr1 92537144 92537155 ZNF384_MA1125.1 8.505262465403836 + +chr1 92537473 92537484 ZNF384_MA1125.1 8.273871680060942 - +chr1 92537474 92537485 ZNF384_MA1125.1 9.613791709170059 - +chr1 92537781 92537792 ZNF384_MA1125.1 10.389703834314455 + +chr1 92537782 92537793 ZNF384_MA1125.1 10.992370465176343 + +chr1 92537783 92537794 ZNF384_MA1125.1 11.439639910232545 + +chr1 92537784 92537795 ZNF384_MA1125.1 11.434934019208008 + +chr1 92537785 92537796 ZNF384_MA1125.1 11.342318221560010 + +chr1 92537786 92537797 ZNF384_MA1125.1 9.779311415973400 + +chr1 92537787 92537798 ZNF384_MA1125.1 7.996228335229663 + +chr1 92537795 92537806 ZNF384_MA1125.1 9.342724906271574 + +chr1 92537796 92537807 ZNF384_MA1125.1 9.973952684075961 + +chr1 92537797 92537808 ZNF384_MA1125.1 7.774526317533576 + +chr1 92537877 92537888 ZNF384_MA1125.1 8.666326894624394 + +chr1 92537899 92537910 ZNF384_MA1125.1 7.690059446730435 + +chr1 92537965 92537976 ZNF384_MA1125.1 7.664847342119885 + +chr1 92538509 92538520 ZNF384_MA1125.1 8.409067454832220 - +chr1 92538635 92538646 ZNF384_MA1125.1 8.670502597239162 + +chr1 92584264 92584275 ZNF384_MA1125.1 7.785371081519358 - +chr1 92584265 92584276 ZNF384_MA1125.1 8.950914111858513 - +chr1 92584266 92584277 ZNF384_MA1125.1 10.252560559759385 - +chr1 92584267 92584278 ZNF384_MA1125.1 10.149858953639074 - +chr1 92584268 92584279 ZNF384_MA1125.1 8.965096293593852 - +chr1 92962205 92962216 ZNF384_MA1125.1 8.337889933641797 - +chr1 92962206 92962217 ZNF384_MA1125.1 8.871594144756196 - +chr1 92962224 92962235 ZNF384_MA1125.1 7.823779038859565 + +chr1 92962511 92962522 ZNF384_MA1125.1 7.785371081519358 - +chr1 92962512 92962523 ZNF384_MA1125.1 9.466330947981877 - +chr1 92962513 92962524 ZNF384_MA1125.1 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ZNF384_MA1125.1 11.641065880752549 + +chr1 93181158 93181169 ZNF384_MA1125.1 11.439639910232545 + +chr1 93181159 93181170 ZNF384_MA1125.1 11.434934019208008 + +chr1 93181160 93181171 ZNF384_MA1125.1 11.342318221560010 + +chr1 93181161 93181172 ZNF384_MA1125.1 11.342318221560010 + +chr1 93181162 93181173 ZNF384_MA1125.1 11.342318221560010 + +chr1 93181163 93181174 ZNF384_MA1125.1 11.342318221560010 + +chr1 93181164 93181175 ZNF384_MA1125.1 11.342318221560010 + +chr1 93181165 93181176 ZNF384_MA1125.1 11.342318221560010 + +chr1 93181166 93181177 ZNF384_MA1125.1 9.466330947981877 + +chr1 93181167 93181178 ZNF384_MA1125.1 9.348377887105972 + +chr1 93591653 93591664 ZNF384_MA1125.1 8.669623350179560 + +chr1 93847712 93847723 ZNF384_MA1125.1 9.820367252389953 - +chr1 93847713 93847724 ZNF384_MA1125.1 9.940466811255298 - +chr1 93847714 93847725 ZNF384_MA1125.1 11.342318221560006 - +chr1 93847715 93847726 ZNF384_MA1125.1 10.693622805983800 - +chr1 93847716 93847727 ZNF384_MA1125.1 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ZNF384_MA1125.1 10.333531057362324 - +chr1 96966969 96966980 ZNF384_MA1125.1 11.194507794319026 - +chr1 97138686 97138697 ZNF384_MA1125.1 8.710727144660694 + +chr1 97159398 97159409 ZNF384_MA1125.1 9.341024117005084 + +chr1 97159399 97159410 ZNF384_MA1125.1 8.717263501277785 + +chr1 97159544 97159555 ZNF384_MA1125.1 7.761907283268151 + +chr1 97159545 97159556 ZNF384_MA1125.1 9.024651358757334 + +chr1 97163964 97163975 ZNF384_MA1125.1 8.216148550080060 + +chr1 97461520 97461531 ZNF384_MA1125.1 8.917968647732490 + +chr1 97461998 97462009 ZNF384_MA1125.1 8.418515842085245 - +chr1 97461999 97462010 ZNF384_MA1125.1 9.291771395679092 - +chr1 97462000 97462011 ZNF384_MA1125.1 11.081762326212665 - +chr1 97462001 97462012 ZNF384_MA1125.1 10.328825166337786 - +chr1 97462002 97462013 ZNF384_MA1125.1 10.807850228503025 - +chr1 97791512 97791523 ZNF384_MA1125.1 7.534100092644597 - +chr1 97848105 97848116 ZNF384_MA1125.1 8.699682471529766 - +chr1 97848106 97848117 ZNF384_MA1125.1 9.298390850282534 - 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ZNF384_MA1125.1 9.130616000397193 + +chr1 99766294 99766305 ZNF384_MA1125.1 7.996228335229663 + +chr1 99784932 99784943 ZNF384_MA1125.1 9.739741343946507 - +chr1 99784933 99784944 ZNF384_MA1125.1 8.263561510984834 - +chr1 99785085 99785096 ZNF384_MA1125.1 9.230062396236576 + +chr1 99785086 99785097 ZNF384_MA1125.1 8.240179871966838 + +chr1 99785123 99785134 ZNF384_MA1125.1 7.946526476801261 - +chr1 99785124 99785135 ZNF384_MA1125.1 9.466330947981877 - +chr1 99785125 99785136 ZNF384_MA1125.1 11.342318221560006 - +chr1 99785126 99785137 ZNF384_MA1125.1 10.693622805983800 - +chr1 99785127 99785138 ZNF384_MA1125.1 11.174378123860663 - +chr1 99785128 99785139 ZNF384_MA1125.1 9.684835641786119 - +chr1 99785129 99785140 ZNF384_MA1125.1 10.933951898971685 - +chr1 100076353 100076364 ZNF384_MA1125.1 10.189731786259355 + +chr1 100076354 100076365 ZNF384_MA1125.1 9.754484340660532 + +chr1 100076355 100076366 ZNF384_MA1125.1 9.164494079784596 + +chr1 100076356 100076367 ZNF384_MA1125.1 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ZNF384_MA1125.1 8.445248728003820 + +chr1 150567550 150567561 ZNF384_MA1125.1 8.737874552627066 + +chr1 150567591 150567602 ZNF384_MA1125.1 7.850118697255171 - +chr1 150579673 150579684 ZNF384_MA1125.1 9.440993684753970 - +chr1 150579674 150579685 ZNF384_MA1125.1 9.563652636654412 - +chr1 150579675 150579686 ZNF384_MA1125.1 11.733681678400544 - +chr1 150579676 150579687 ZNF384_MA1125.1 10.747581418334327 - +chr1 150579680 150579691 ZNF384_MA1125.1 8.871594144756198 + +chr1 150579681 150579692 ZNF384_MA1125.1 8.337889933641797 + +chr1 151166052 151166063 ZNF384_MA1125.1 7.615145483691484 + +chr1 151198662 151198673 ZNF384_MA1125.1 9.297586387944136 - +chr1 151198663 151198674 ZNF384_MA1125.1 9.987594457116664 - +chr1 151198664 151198675 ZNF384_MA1125.1 10.445921728505853 - +chr1 151327512 151327523 ZNF384_MA1125.1 7.877088926852736 + +chr1 151327513 151327524 ZNF384_MA1125.1 8.546318301820392 + +chr1 152460166 152460177 ZNF384_MA1125.1 9.348377887105972 - +chr1 152460167 152460178 ZNF384_MA1125.1 9.466330947981877 - +chr1 152460168 152460179 ZNF384_MA1125.1 10.693622805983800 - +chr1 152460169 152460180 ZNF384_MA1125.1 10.433066910636461 - +chr1 152460170 152460181 ZNF384_MA1125.1 9.552852434867081 - +chr1 152460171 152460182 ZNF384_MA1125.1 9.312632145251547 - +chr1 153671878 153671889 ZNF384_MA1125.1 8.803342942308692 + +chr1 153783652 153783663 ZNF384_MA1125.1 9.615390960582097 + +chr1 153783653 153783664 ZNF384_MA1125.1 9.239067504537168 + +chr1 153783654 153783665 ZNF384_MA1125.1 10.566345490089304 + +chr1 153783655 153783666 ZNF384_MA1125.1 10.693622805983804 + +chr1 153783656 153783667 ZNF384_MA1125.1 11.342318221560010 + +chr1 153783657 153783668 ZNF384_MA1125.1 11.342318221560010 + +chr1 153783658 153783669 ZNF384_MA1125.1 9.779311415973400 + +chr1 153783659 153783670 ZNF384_MA1125.1 7.835072939947760 + +chr1 153791341 153791352 ZNF384_MA1125.1 7.681890199031491 + +chr1 153791491 153791502 ZNF384_MA1125.1 7.823779038859564 - +chr1 153805657 153805668 ZNF384_MA1125.1 7.850118697255171 - +chr1 153849635 153849646 ZNF384_MA1125.1 8.375581582011559 - +chr1 153849642 153849653 ZNF384_MA1125.1 7.690895307332082 - +chr1 153849643 153849654 ZNF384_MA1125.1 9.057964625393554 - +chr1 153967665 153967676 ZNF384_MA1125.1 10.319820058037198 + +chr1 153967666 153967677 ZNF384_MA1125.1 10.631583981668335 + +chr1 153967667 153967678 ZNF384_MA1125.1 10.767977395882752 + +chr1 153967668 153967679 ZNF384_MA1125.1 8.950914111858513 + +chr1 153967669 153967680 ZNF384_MA1125.1 9.348377887105972 + +chr1 154182722 154182733 ZNF384_MA1125.1 8.122226811090933 + +chr1 154608328 154608339 ZNF384_MA1125.1 7.946526476801261 - +chr1 154608329 154608340 ZNF384_MA1125.1 9.466330947981877 - +chr1 154608330 154608341 ZNF384_MA1125.1 11.342318221560006 - +chr1 154608331 154608342 ZNF384_MA1125.1 11.342318221560006 - +chr1 154608332 154608343 ZNF384_MA1125.1 11.342318221560006 - +chr1 154608333 154608344 ZNF384_MA1125.1 11.342318221560006 - +chr1 154608334 154608345 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154608513 ZNF384_MA1125.1 11.342318221560006 - +chr1 154608503 154608514 ZNF384_MA1125.1 10.693622805983800 - +chr1 154608504 154608515 ZNF384_MA1125.1 11.081762326212665 - +chr1 154608505 154608516 ZNF384_MA1125.1 10.421440963985784 - +chr1 154608506 154608517 ZNF384_MA1125.1 10.812556119527564 - +chr1 154937121 154937132 ZNF384_MA1125.1 9.701701615793521 + +chr1 154937122 154937133 ZNF384_MA1125.1 8.655391745686369 + +chr1 154974068 154974079 ZNF384_MA1125.1 8.711558433655716 + +chr1 155859102 155859113 ZNF384_MA1125.1 9.220016347603552 + +chr1 155859103 155859114 ZNF384_MA1125.1 9.552852434867084 + +chr1 155859104 155859115 ZNF384_MA1125.1 10.433066910636464 + +chr1 155859105 155859116 ZNF384_MA1125.1 8.817635532405671 + +chr1 155859106 155859117 ZNF384_MA1125.1 7.946526476801261 + +chr1 155946670 155946681 ZNF384_MA1125.1 9.087252924075184 + +chr1 155946671 155946682 ZNF384_MA1125.1 9.696827404726911 + +chr1 155946678 155946689 ZNF384_MA1125.1 10.807850228503028 + +chr1 155946679 155946690 ZNF384_MA1125.1 8.452837892759657 + +chr1 155946680 155946691 ZNF384_MA1125.1 9.087821991758631 + +chr1 156213472 156213483 ZNF384_MA1125.1 10.114409020557954 - +chr1 156213473 156213484 ZNF384_MA1125.1 9.046982348837080 - +chr1 156225864 156225875 ZNF384_MA1125.1 8.162884672616064 - +chr1 156225865 156225876 ZNF384_MA1125.1 8.790789275442775 - +chr1 156226179 156226190 ZNF384_MA1125.1 9.238058720498975 - +chr1 156226264 156226275 ZNF384_MA1125.1 8.149173673290935 + +chr1 157653191 157653202 ZNF384_MA1125.1 8.282452252743777 - +chr1 157653345 157653356 ZNF384_MA1125.1 8.533610836539735 - +chr1 158204065 158204076 ZNF384_MA1125.1 8.211940298865352 + +chr1 158286839 158286850 ZNF384_MA1125.1 8.882662909411007 - +chr1 158286840 158286851 ZNF384_MA1125.1 8.689553754172774 - +chr1 158286841 158286852 ZNF384_MA1125.1 10.057243155991076 - +chr1 158286842 158286853 ZNF384_MA1125.1 9.093668982022155 - +chr1 158830596 158830607 ZNF384_MA1125.1 8.960390402569317 + +chr1 158830597 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158952120 158952131 ZNF384_MA1125.1 10.057243155991076 - +chr1 158952121 158952132 ZNF384_MA1125.1 8.960390402569313 - +chr1 158952377 158952388 ZNF384_MA1125.1 9.427223488408332 + +chr1 158952378 158952389 ZNF384_MA1125.1 11.125649044629185 + +chr1 158952379 158952390 ZNF384_MA1125.1 11.439639910232545 + +chr1 158952380 158952391 ZNF384_MA1125.1 11.434934019208008 + +chr1 158952381 158952392 ZNF384_MA1125.1 11.342318221560010 + +chr1 158952382 158952393 ZNF384_MA1125.1 9.940466811255302 + +chr1 158952383 158952394 ZNF384_MA1125.1 7.944379978811821 + +chr1 158952493 158952504 ZNF384_MA1125.1 8.139974909563003 - +chr1 158952494 158952505 ZNF384_MA1125.1 9.127360790116262 - +chr1 159009636 159009647 ZNF384_MA1125.1 10.412435855685196 + +chr1 159009637 159009648 ZNF384_MA1125.1 9.068577176081725 + +chr1 159012887 159012898 ZNF384_MA1125.1 8.666417860685737 - +chr1 159012888 159012899 ZNF384_MA1125.1 9.794357173280805 - +chr1 159239711 159239722 ZNF384_MA1125.1 8.240179871966838 - +chr1 159239712 159239723 ZNF384_MA1125.1 9.096783816783732 - +chr1 159838908 159838919 ZNF384_MA1125.1 8.290270103397663 - +chr1 159838909 159838920 ZNF384_MA1125.1 8.793211155907180 - +chr1 160263138 160263149 ZNF384_MA1125.1 9.820367252389953 - +chr1 160263139 160263150 ZNF384_MA1125.1 9.940466811255298 - +chr1 160263140 160263151 ZNF384_MA1125.1 11.342318221560006 - +chr1 160263141 160263152 ZNF384_MA1125.1 11.342318221560006 - +chr1 160263142 160263153 ZNF384_MA1125.1 11.342318221560006 - +chr1 160263143 160263154 ZNF384_MA1125.1 10.826901385436642 - +chr1 160263144 160263155 ZNF384_MA1125.1 10.767977395882749 - +chr1 160263145 160263156 ZNF384_MA1125.1 10.631583981668332 - +chr1 160263146 160263157 ZNF384_MA1125.1 10.412435855685192 - +chr1 160711860 160711871 ZNF384_MA1125.1 9.745479232359941 + +chr1 160711861 160711872 ZNF384_MA1125.1 10.116167145544971 + +chr1 160711862 160711873 ZNF384_MA1125.1 10.767977395882752 + +chr1 160711863 160711874 ZNF384_MA1125.1 10.826901385436646 + 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176897579 ZNF384_MA1125.1 10.057243155991079 + +chr1 176897569 176897580 ZNF384_MA1125.1 8.850709149454680 + +chr1 176897639 176897650 ZNF384_MA1125.1 8.604418794805419 + +chr1 176897640 176897651 ZNF384_MA1125.1 8.335743435652358 + +chr1 177946101 177946112 ZNF384_MA1125.1 9.789443202374908 - +chr1 177946102 177946113 ZNF384_MA1125.1 8.443263399523513 - +chr1 178412058 178412069 ZNF384_MA1125.1 10.132136798175940 + +chr1 178412059 178412070 ZNF384_MA1125.1 10.120873036569510 + +chr1 178412060 178412071 ZNF384_MA1125.1 10.860593193530750 + +chr1 178412061 178412072 ZNF384_MA1125.1 10.826901385436646 + +chr1 178412062 178412073 ZNF384_MA1125.1 11.342318221560010 + +chr1 178412063 178412074 ZNF384_MA1125.1 11.342318221560010 + +chr1 178412064 178412075 ZNF384_MA1125.1 9.466330947981877 + +chr1 178412065 178412076 ZNF384_MA1125.1 9.348377887105972 + +chr1 178412299 178412310 ZNF384_MA1125.1 8.219057449568192 + +chr1 178579622 178579633 ZNF384_MA1125.1 8.162884672616064 - +chr1 178579623 178579634 ZNF384_MA1125.1 8.790789275442775 - +chr1 178606319 178606330 ZNF384_MA1125.1 8.284897795060312 - +chr1 178606320 178606331 ZNF384_MA1125.1 9.150367648729137 - +chr1 178606347 178606358 ZNF384_MA1125.1 8.352541964294478 + +chr1 178608374 178608385 ZNF384_MA1125.1 7.888753740052802 + +chr1 178608529 178608540 ZNF384_MA1125.1 10.933951898971689 + +chr1 178608530 178608541 ZNF384_MA1125.1 9.684835641786123 + +chr1 178608531 178608542 ZNF384_MA1125.1 11.174378123860667 + +chr1 178608532 178608543 ZNF384_MA1125.1 10.693622805983804 + +chr1 178608533 178608544 ZNF384_MA1125.1 11.342318221560010 + +chr1 178608534 178608545 ZNF384_MA1125.1 11.342318221560010 + +chr1 178608535 178608546 ZNF384_MA1125.1 11.342318221560010 + +chr1 178608536 178608547 ZNF384_MA1125.1 11.342318221560010 + +chr1 178608537 178608548 ZNF384_MA1125.1 11.342318221560010 + +chr1 178608538 178608549 ZNF384_MA1125.1 11.342318221560010 + +chr1 178608539 178608550 ZNF384_MA1125.1 11.342318221560010 + +chr1 178608540 178608551 ZNF384_MA1125.1 11.342318221560010 + +chr1 178608541 178608552 ZNF384_MA1125.1 11.342318221560010 + +chr1 178608542 178608553 ZNF384_MA1125.1 11.342318221560010 + +chr1 178608543 178608554 ZNF384_MA1125.1 11.342318221560010 + +chr1 178608544 178608555 ZNF384_MA1125.1 9.466330947981877 + +chr1 178608545 178608556 ZNF384_MA1125.1 7.785371081519358 + +chr1 178659874 178659885 ZNF384_MA1125.1 9.524104164404578 + +chr1 178659875 178659886 ZNF384_MA1125.1 10.120873036569510 + +chr1 178659876 178659887 ZNF384_MA1125.1 8.984605919952617 + +chr1 178659877 178659888 ZNF384_MA1125.1 8.832961050982608 + +chr1 178684793 178684804 ZNF384_MA1125.1 9.677262716173511 - +chr1 178684845 178684856 ZNF384_MA1125.1 10.711183514877735 + +chr1 178684846 178684857 ZNF384_MA1125.1 9.165898864754260 + +chr1 178684847 178684858 ZNF384_MA1125.1 8.916354717505111 + +chr1 178726106 178726117 ZNF384_MA1125.1 9.675830533485531 + +chr1 178726107 178726118 ZNF384_MA1125.1 8.848212505738200 + +chr1 179129678 179129689 ZNF384_MA1125.1 10.933951898971689 + +chr1 179129679 179129690 ZNF384_MA1125.1 9.684835641786123 + +chr1 179129680 179129691 ZNF384_MA1125.1 11.174378123860667 + +chr1 179129681 179129692 ZNF384_MA1125.1 10.693622805983804 + +chr1 179129682 179129693 ZNF384_MA1125.1 11.342318221560010 + +chr1 179129683 179129694 ZNF384_MA1125.1 11.342318221560010 + +chr1 179129684 179129695 ZNF384_MA1125.1 11.342318221560010 + +chr1 179129685 179129696 ZNF384_MA1125.1 11.342318221560010 + +chr1 179129686 179129697 ZNF384_MA1125.1 11.342318221560010 + +chr1 179129687 179129698 ZNF384_MA1125.1 11.342318221560010 + +chr1 179129688 179129699 ZNF384_MA1125.1 11.342318221560010 + +chr1 179129689 179129700 ZNF384_MA1125.1 11.342318221560010 + +chr1 179129690 179129701 ZNF384_MA1125.1 9.940466811255302 + +chr1 179129691 179129702 ZNF384_MA1125.1 8.418515842085245 + +chr1 179129947 179129958 ZNF384_MA1125.1 9.048131989150704 - +chr1 179129948 179129959 ZNF384_MA1125.1 8.919312826375839 - 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7.877088926852736 + +chr1 181505364 181505375 ZNF384_MA1125.1 8.699682471529766 - +chr1 181505365 181505376 ZNF384_MA1125.1 9.205775052634536 - +chr1 181505366 181505377 ZNF384_MA1125.1 10.328825166337786 - +chr1 181505367 181505378 ZNF384_MA1125.1 10.807850228503025 - +chr1 181505380 181505391 ZNF384_MA1125.1 9.230139647835028 - +chr1 181505381 181505392 ZNF384_MA1125.1 8.121828836199507 - +chr1 181505382 181505393 ZNF384_MA1125.1 10.933951898971685 - +chr1 181937012 181937023 ZNF384_MA1125.1 10.742875527309792 + +chr1 181937013 181937024 ZNF384_MA1125.1 11.641065880752549 + +chr1 181937014 181937025 ZNF384_MA1125.1 11.439639910232545 + +chr1 181937015 181937026 ZNF384_MA1125.1 11.434934019208008 + +chr1 181937016 181937027 ZNF384_MA1125.1 11.342318221560010 + +chr1 181937017 181937028 ZNF384_MA1125.1 11.342318221560010 + +chr1 181937018 181937029 ZNF384_MA1125.1 11.342318221560010 + +chr1 181937019 181937030 ZNF384_MA1125.1 11.342318221560010 + +chr1 181937020 181937031 ZNF384_MA1125.1 11.342318221560010 + +chr1 181937021 181937032 ZNF384_MA1125.1 11.342318221560010 + +chr1 181937022 181937033 ZNF384_MA1125.1 11.342318221560010 + +chr1 181937023 181937034 ZNF384_MA1125.1 11.342318221560010 + +chr1 181937024 181937035 ZNF384_MA1125.1 11.342318221560010 + +chr1 181937025 181937036 ZNF384_MA1125.1 11.342318221560010 + +chr1 181937026 181937037 ZNF384_MA1125.1 9.466330947981877 + +chr1 181937027 181937038 ZNF384_MA1125.1 7.785371081519358 + +chr1 182249115 182249126 ZNF384_MA1125.1 7.944379978811821 - +chr1 182249116 182249127 ZNF384_MA1125.1 10.033082608903296 - +chr1 182249117 182249128 ZNF384_MA1125.1 11.439639910232541 - +chr1 182249118 182249129 ZNF384_MA1125.1 11.733681678400544 - +chr1 182249119 182249130 ZNF384_MA1125.1 10.654965620686330 - +chr1 182426835 182426846 ZNF384_MA1125.1 7.888753740052802 + +chr1 182426990 182427001 ZNF384_MA1125.1 10.192640685747486 + +chr1 182426991 182427002 ZNF384_MA1125.1 9.684835641786123 + +chr1 182426992 182427003 ZNF384_MA1125.1 11.174378123860667 + +chr1 182426993 182427004 ZNF384_MA1125.1 10.693622805983804 + +chr1 182426994 182427005 ZNF384_MA1125.1 11.342318221560010 + +chr1 182426995 182427006 ZNF384_MA1125.1 11.342318221560010 + +chr1 182426996 182427007 ZNF384_MA1125.1 9.466330947981877 + +chr1 182426997 182427008 ZNF384_MA1125.1 7.946526476801261 + +chr1 182428131 182428142 ZNF384_MA1125.1 9.741008418738248 + +chr1 182428132 182428143 ZNF384_MA1125.1 9.116383191598210 + +chr1 182428133 182428144 ZNF384_MA1125.1 9.445699575778507 + +chr1 182839881 182839892 ZNF384_MA1125.1 9.093668982022159 + +chr1 182839882 182839893 ZNF384_MA1125.1 8.655391745686369 + +chr1 183071076 183071087 ZNF384_MA1125.1 7.574517044600419 - +chr1 183071077 183071088 ZNF384_MA1125.1 8.765818360751176 - +chr1 183071078 183071089 ZNF384_MA1125.1 10.807850228503025 - +chr1 183071091 183071102 ZNF384_MA1125.1 9.398079745534371 - +chr1 183071092 183071103 ZNF384_MA1125.1 9.779311415973396 - +chr1 183071093 183071104 ZNF384_MA1125.1 11.342318221560006 - +chr1 183071094 183071105 ZNF384_MA1125.1 11.342318221560006 - +chr1 183071095 183071106 ZNF384_MA1125.1 10.693622805983800 - +chr1 183071096 183071107 ZNF384_MA1125.1 11.174378123860663 - +chr1 183071097 183071108 ZNF384_MA1125.1 9.684835641786119 - +chr1 183071098 183071109 ZNF384_MA1125.1 10.841336101323687 - +chr1 183604741 183604752 ZNF384_MA1125.1 7.860164745888194 - +chr1 183842331 183842342 ZNF384_MA1125.1 7.946526476801261 - +chr1 183842332 183842343 ZNF384_MA1125.1 9.466330947981877 - +chr1 183842333 183842344 ZNF384_MA1125.1 11.342318221560006 - +chr1 183842334 183842345 ZNF384_MA1125.1 11.342318221560006 - +chr1 183842335 183842346 ZNF384_MA1125.1 10.826901385436642 - +chr1 183842336 183842347 ZNF384_MA1125.1 10.860593193530747 - +chr1 183842337 183842348 ZNF384_MA1125.1 10.728905670340868 - +chr1 183842338 183842349 ZNF384_MA1125.1 10.711183514877732 - +chr1 183842600 183842611 ZNF384_MA1125.1 8.231350367694198 + +chr1 183842601 183842612 ZNF384_MA1125.1 8.124030794964812 + +chr1 183842949 183842960 ZNF384_MA1125.1 9.025343363985632 - +chr1 183897374 183897385 ZNF384_MA1125.1 9.285899259332972 + +chr1 183897545 183897556 ZNF384_MA1125.1 10.933951898971689 + +chr1 183897546 183897557 ZNF384_MA1125.1 9.684835641786123 + +chr1 183897547 183897558 ZNF384_MA1125.1 11.174378123860667 + +chr1 183897548 183897559 ZNF384_MA1125.1 10.693622805983804 + +chr1 183897549 183897560 ZNF384_MA1125.1 11.342318221560010 + +chr1 183897550 183897561 ZNF384_MA1125.1 11.342318221560010 + +chr1 183897551 183897562 ZNF384_MA1125.1 11.342318221560010 + +chr1 183897552 183897563 ZNF384_MA1125.1 9.779311415973400 + +chr1 183897553 183897564 ZNF384_MA1125.1 9.398079745534371 + +chr1 183912257 183912268 ZNF384_MA1125.1 8.316653412169353 + +chr1 183956737 183956748 ZNF384_MA1125.1 10.194437677283892 + +chr1 183956738 183956749 ZNF384_MA1125.1 9.847100138308530 + +chr1 183956739 183956750 ZNF384_MA1125.1 8.690358216511171 + +chr1 184163971 184163982 ZNF384_MA1125.1 8.950914111858513 - +chr1 184163972 184163983 ZNF384_MA1125.1 10.767977395882749 - +chr1 184163973 184163984 ZNF384_MA1125.1 9.982888566092125 - +chr1 184163974 184163985 ZNF384_MA1125.1 9.543847326566489 - +chr1 184164379 184164390 ZNF384_MA1125.1 7.823779038859564 - +chr1 184387294 184387305 ZNF384_MA1125.1 7.810462887459795 + +chr1 184859640 184859651 ZNF384_MA1125.1 8.257360446803343 - +chr1 184859641 184859652 ZNF384_MA1125.1 9.425049975131934 - +chr1 184859642 184859653 ZNF384_MA1125.1 10.767977395882749 - +chr1 184859643 184859654 ZNF384_MA1125.1 10.631583981668332 - +chr1 184859644 184859655 ZNF384_MA1125.1 9.671124642460988 - +chr1 184867487 184867498 ZNF384_MA1125.1 7.928415948335700 + +chr1 184867488 184867499 ZNF384_MA1125.1 8.637643647214297 + +chr1 184892772 184892783 ZNF384_MA1125.1 9.642419655273972 - +chr1 184892773 184892784 ZNF384_MA1125.1 8.480230687915661 - +chr1 184892780 184892791 ZNF384_MA1125.1 9.652427154690610 - +chr1 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194477952 194477963 ZNF384_MA1125.1 7.925015681400192 - +chr1 194831021 194831032 ZNF384_MA1125.1 8.112823727898919 + +chr1 194831174 194831185 ZNF384_MA1125.1 8.352900807378564 + +chr1 194831671 194831682 ZNF384_MA1125.1 7.726886166435353 + +chr1 195195395 195195406 ZNF384_MA1125.1 7.884047849028264 - +chr1 195195621 195195632 ZNF384_MA1125.1 8.890484886515139 - +chr1 196217417 196217428 ZNF384_MA1125.1 8.687345505642696 - +chr1 196217418 196217429 ZNF384_MA1125.1 8.849429050098582 - +chr1 196373121 196373132 ZNF384_MA1125.1 8.797869088867142 + +chr1 196373303 196373314 ZNF384_MA1125.1 8.128238643456601 + +chr1 196660942 196660953 ZNF384_MA1125.1 8.671307059577556 - +chr1 196660975 196660986 ZNF384_MA1125.1 8.184456537648002 - +chr1 196743434 196743445 ZNF384_MA1125.1 8.774037061428714 - +chr1 196743435 196743446 ZNF384_MA1125.1 8.848212505738200 - +chr1 196743436 196743447 ZNF384_MA1125.1 10.324525949061732 - +chr1 196827887 196827898 ZNF384_MA1125.1 8.804174231303714 + +chr1 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197201874 197201885 ZNF384_MA1125.1 9.246026426712696 + +chr1 197400303 197400314 ZNF384_MA1125.1 7.785371081519358 - +chr1 197400304 197400315 ZNF384_MA1125.1 9.466330947981877 - +chr1 197400305 197400316 ZNF384_MA1125.1 11.342318221560006 - +chr1 197400306 197400317 ZNF384_MA1125.1 11.342318221560006 - +chr1 197400307 197400318 ZNF384_MA1125.1 11.342318221560006 - +chr1 197400308 197400319 ZNF384_MA1125.1 11.342318221560006 - +chr1 197400309 197400320 ZNF384_MA1125.1 11.342318221560006 - +chr1 197400310 197400321 ZNF384_MA1125.1 11.342318221560006 - +chr1 197400311 197400322 ZNF384_MA1125.1 11.342318221560006 - +chr1 197400312 197400323 ZNF384_MA1125.1 11.342318221560006 - +chr1 197400313 197400324 ZNF384_MA1125.1 11.342318221560006 - +chr1 197400314 197400325 ZNF384_MA1125.1 11.342318221560006 - +chr1 197400315 197400326 ZNF384_MA1125.1 11.434934019208004 - +chr1 197400316 197400327 ZNF384_MA1125.1 11.439639910232541 - +chr1 197400317 197400328 ZNF384_MA1125.1 11.733681678400544 - 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ZNF384_MA1125.1 11.174378123860663 - +chr1 202967522 202967533 ZNF384_MA1125.1 9.684835641786119 - +chr1 202967523 202967534 ZNF384_MA1125.1 10.841336101323687 - +chr1 203006612 203006623 ZNF384_MA1125.1 7.946526476801261 - +chr1 203006613 203006624 ZNF384_MA1125.1 9.466330947981877 - +chr1 203006614 203006625 ZNF384_MA1125.1 11.342318221560006 - +chr1 203006615 203006626 ZNF384_MA1125.1 10.693622805983800 - +chr1 203006616 203006627 ZNF384_MA1125.1 11.174378123860663 - +chr1 203006617 203006628 ZNF384_MA1125.1 9.684835641786119 - +chr1 203006618 203006629 ZNF384_MA1125.1 10.933951898971685 - +chr1 203289930 203289941 ZNF384_MA1125.1 8.687345505642696 - +chr1 203289931 203289942 ZNF384_MA1125.1 8.108117836874378 - +chr1 203327544 203327555 ZNF384_MA1125.1 10.412435855685196 + +chr1 203327545 203327556 ZNF384_MA1125.1 10.631583981668335 + +chr1 203327546 203327557 ZNF384_MA1125.1 10.767977395882752 + +chr1 203327547 203327558 ZNF384_MA1125.1 10.826901385436646 + +chr1 203327548 203327559 ZNF384_MA1125.1 11.342318221560010 + +chr1 203327549 203327560 ZNF384_MA1125.1 11.342318221560010 + +chr1 203327550 203327561 ZNF384_MA1125.1 9.466330947981877 + +chr1 203327551 203327562 ZNF384_MA1125.1 9.348377887105972 + +chr1 203327558 203327569 ZNF384_MA1125.1 8.443832784459065 + +chr1 203327559 203327570 ZNF384_MA1125.1 8.637643647214297 + +chr1 203626499 203626510 ZNF384_MA1125.1 7.665839046289580 - +chr1 203626500 203626511 ZNF384_MA1125.1 8.519328156344899 - +chr1 203649635 203649646 ZNF384_MA1125.1 9.405998818198320 + +chr1 203649636 203649647 ZNF384_MA1125.1 8.806874197167733 + +chr1 203795807 203795818 ZNF384_MA1125.1 9.538885191084418 - +chr1 203861342 203861353 ZNF384_MA1125.1 10.192640685747486 + +chr1 203861343 203861354 ZNF384_MA1125.1 9.684835641786123 + +chr1 203861344 203861355 ZNF384_MA1125.1 11.174378123860667 + +chr1 203861345 203861356 ZNF384_MA1125.1 10.693622805983804 + +chr1 203861346 203861357 ZNF384_MA1125.1 11.342318221560010 + +chr1 203861347 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ZNF384_MA1125.1 10.693622805983800 - +chr1 212567165 212567176 ZNF384_MA1125.1 11.174378123860663 - +chr1 212567166 212567177 ZNF384_MA1125.1 10.426146855010321 - +chr1 212567167 212567178 ZNF384_MA1125.1 10.457902472119361 - +chr1 212586768 212586779 ZNF384_MA1125.1 8.000824193764043 + +chr1 212596151 212596162 ZNF384_MA1125.1 8.316144060837882 + +chr1 212596168 212596179 ZNF384_MA1125.1 8.617597815392912 - +chr1 212683211 212683222 ZNF384_MA1125.1 9.466330947981877 - +chr1 212683212 212683223 ZNF384_MA1125.1 11.342318221560006 - +chr1 212683213 212683224 ZNF384_MA1125.1 11.342318221560006 - +chr1 212683214 212683225 ZNF384_MA1125.1 11.342318221560006 - +chr1 212683215 212683226 ZNF384_MA1125.1 11.342318221560006 - +chr1 212683216 212683227 ZNF384_MA1125.1 11.342318221560006 - +chr1 212683217 212683228 ZNF384_MA1125.1 10.826901385436642 - +chr1 212683218 212683229 ZNF384_MA1125.1 10.767977395882749 - +chr1 212683219 212683230 ZNF384_MA1125.1 10.724199779316329 - +chr1 212683220 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11.342318221560006 - +chr1 224205137 224205148 ZNF384_MA1125.1 11.342318221560006 - +chr1 224205138 224205149 ZNF384_MA1125.1 11.342318221560006 - +chr1 224205139 224205150 ZNF384_MA1125.1 11.342318221560006 - +chr1 224205140 224205151 ZNF384_MA1125.1 11.342318221560006 - +chr1 224205141 224205152 ZNF384_MA1125.1 10.693622805983800 - +chr1 224205142 224205153 ZNF384_MA1125.1 11.174378123860663 - +chr1 224205143 224205154 ZNF384_MA1125.1 9.684835641786119 - +chr1 224205144 224205155 ZNF384_MA1125.1 10.933951898971685 - +chr1 224205299 224205310 ZNF384_MA1125.1 7.888753740052802 - +chr1 224498457 224498468 ZNF384_MA1125.1 7.930048522165452 - +chr1 224593142 224593153 ZNF384_MA1125.1 9.348377887105972 - +chr1 224593143 224593154 ZNF384_MA1125.1 9.466330947981877 - +chr1 224593144 224593155 ZNF384_MA1125.1 11.342318221560006 - +chr1 224593145 224593156 ZNF384_MA1125.1 11.342318221560006 - +chr1 224593146 224593157 ZNF384_MA1125.1 11.434934019208004 - +chr1 224593147 224593158 ZNF384_MA1125.1 11.439639910232541 - +chr1 224593148 224593159 ZNF384_MA1125.1 11.125649044629181 - +chr1 224593149 224593160 ZNF384_MA1125.1 10.075918903984535 - +chr1 224593158 224593169 ZNF384_MA1125.1 7.946526476801261 - +chr1 224593159 224593170 ZNF384_MA1125.1 9.466330947981877 - +chr1 224593160 224593171 ZNF384_MA1125.1 11.342318221560006 - +chr1 224593161 224593172 ZNF384_MA1125.1 11.342318221560006 - +chr1 224593162 224593173 ZNF384_MA1125.1 11.342318221560006 - +chr1 224593163 224593174 ZNF384_MA1125.1 10.693622805983800 - +chr1 224593164 224593175 ZNF384_MA1125.1 11.174378123860663 - +chr1 224593165 224593176 ZNF384_MA1125.1 9.684835641786119 - +chr1 224593166 224593177 ZNF384_MA1125.1 10.933951898971685 - +chr1 224644697 224644708 ZNF384_MA1125.1 7.707781602193569 - +chr1 224644698 224644709 ZNF384_MA1125.1 8.402551811609122 - +chr1 224701196 224701207 ZNF384_MA1125.1 9.348377887105972 - +chr1 224701197 224701208 ZNF384_MA1125.1 9.466330947981877 - +chr1 224701198 224701209 ZNF384_MA1125.1 11.342318221560006 - +chr1 224701199 224701210 ZNF384_MA1125.1 11.342318221560006 - +chr1 224701200 224701211 ZNF384_MA1125.1 11.342318221560006 - +chr1 224701201 224701212 ZNF384_MA1125.1 11.342318221560006 - +chr1 224701202 224701213 ZNF384_MA1125.1 10.693622805983800 - +chr1 224701203 224701214 ZNF384_MA1125.1 10.566345490089301 - +chr1 224701204 224701215 ZNF384_MA1125.1 9.754484340660529 - +chr1 224701205 224701216 ZNF384_MA1125.1 9.448420573035147 - +chr1 225428432 225428443 ZNF384_MA1125.1 8.349976244451337 - +chr1 225428433 225428444 ZNF384_MA1125.1 10.037788499927833 - +chr1 225428434 225428445 ZNF384_MA1125.1 10.992370465176339 - +chr1 225428435 225428446 ZNF384_MA1125.1 9.874286998191087 - +chr1 225445354 225445365 ZNF384_MA1125.1 7.946526476801261 - +chr1 225445355 225445366 ZNF384_MA1125.1 9.466330947981877 - +chr1 225445356 225445367 ZNF384_MA1125.1 11.342318221560006 - +chr1 225445357 225445368 ZNF384_MA1125.1 11.434934019208004 - +chr1 225445358 225445369 ZNF384_MA1125.1 11.439639910232541 - +chr1 225445359 225445370 ZNF384_MA1125.1 10.992370465176339 - +chr1 225445360 225445371 ZNF384_MA1125.1 10.482319631962449 - +chr1 225848444 225848455 ZNF384_MA1125.1 10.097115988611357 + +chr1 225848445 225848456 ZNF384_MA1125.1 7.878497067082399 + +chr1 226028966 226028977 ZNF384_MA1125.1 10.933951898971689 + +chr1 226028967 226028978 ZNF384_MA1125.1 9.684835641786123 + +chr1 226028968 226028979 ZNF384_MA1125.1 11.174378123860667 + +chr1 226028969 226028980 ZNF384_MA1125.1 10.693622805983804 + +chr1 226028970 226028981 ZNF384_MA1125.1 11.342318221560010 + +chr1 226028971 226028982 ZNF384_MA1125.1 11.342318221560010 + +chr1 226028972 226028983 ZNF384_MA1125.1 11.342318221560010 + +chr1 226028973 226028984 ZNF384_MA1125.1 11.342318221560010 + +chr1 226028974 226028985 ZNF384_MA1125.1 11.342318221560010 + +chr1 226028975 226028986 ZNF384_MA1125.1 11.342318221560010 + +chr1 226028976 226028987 ZNF384_MA1125.1 9.940466811255302 + +chr1 226028977 226028988 ZNF384_MA1125.1 8.257360446803343 + +chr1 226029198 226029209 ZNF384_MA1125.1 9.145661757704602 + +chr1 226029199 226029210 ZNF384_MA1125.1 10.068269270990449 + +chr1 226029200 226029211 ZNF384_MA1125.1 10.433066910636464 + +chr1 226029201 226029212 ZNF384_MA1125.1 10.693622805983804 + +chr1 226029202 226029213 ZNF384_MA1125.1 11.342318221560010 + +chr1 226029203 226029214 ZNF384_MA1125.1 11.342318221560010 + +chr1 226029204 226029215 ZNF384_MA1125.1 11.342318221560010 + +chr1 226029205 226029216 ZNF384_MA1125.1 9.466330947981877 + +chr1 226029206 226029217 ZNF384_MA1125.1 7.946526476801261 + +chr1 226425791 226425802 ZNF384_MA1125.1 8.312290590216318 + +chr1 226643672 226643683 ZNF384_MA1125.1 8.241396416327223 + +chr1 226643673 226643684 ZNF384_MA1125.1 8.687345505642696 + +chr1 226675124 226675135 ZNF384_MA1125.1 9.522775162934099 + +chr1 226675125 226675136 ZNF384_MA1125.1 9.239067504537168 + +chr1 226675126 226675137 ZNF384_MA1125.1 10.566345490089304 + +chr1 226675127 226675138 ZNF384_MA1125.1 10.693622805983804 + +chr1 226675128 226675139 ZNF384_MA1125.1 11.342318221560010 + +chr1 226675129 226675140 ZNF384_MA1125.1 11.342318221560010 + +chr1 226675130 226675141 ZNF384_MA1125.1 11.342318221560010 + +chr1 226675131 226675142 ZNF384_MA1125.1 11.342318221560010 + +chr1 226675132 226675143 ZNF384_MA1125.1 11.342318221560010 + +chr1 226675133 226675144 ZNF384_MA1125.1 11.342318221560010 + +chr1 226675134 226675145 ZNF384_MA1125.1 11.342318221560010 + +chr1 226675135 226675146 ZNF384_MA1125.1 11.342318221560010 + +chr1 226675136 226675147 ZNF384_MA1125.1 11.342318221560010 + +chr1 226675137 226675148 ZNF384_MA1125.1 11.342318221560010 + +chr1 226675138 226675149 ZNF384_MA1125.1 11.342318221560010 + +chr1 226675139 226675150 ZNF384_MA1125.1 11.342318221560010 + +chr1 226675140 226675151 ZNF384_MA1125.1 11.342318221560010 + +chr1 226675141 226675152 ZNF384_MA1125.1 11.342318221560010 + +chr1 226675142 226675153 ZNF384_MA1125.1 9.466330947981877 + 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11.342318221560006 - +chr1 228406886 228406897 ZNF384_MA1125.1 11.342318221560006 - +chr1 228406887 228406898 ZNF384_MA1125.1 11.342318221560006 - +chr1 228406888 228406899 ZNF384_MA1125.1 11.342318221560006 - +chr1 228406889 228406900 ZNF384_MA1125.1 11.342318221560006 - +chr1 228406890 228406901 ZNF384_MA1125.1 11.342318221560006 - +chr1 228406891 228406902 ZNF384_MA1125.1 11.342318221560006 - +chr1 228406892 228406903 ZNF384_MA1125.1 11.342318221560006 - +chr1 228406893 228406904 ZNF384_MA1125.1 11.342318221560006 - +chr1 228406894 228406905 ZNF384_MA1125.1 11.342318221560006 - +chr1 228406895 228406906 ZNF384_MA1125.1 10.693622805983800 - +chr1 228406896 228406907 ZNF384_MA1125.1 10.433066910636461 - +chr1 228406897 228406908 ZNF384_MA1125.1 10.160885068638443 - +chr1 228406898 228406909 ZNF384_MA1125.1 9.891678861953341 - +chr1 228457827 228457838 ZNF384_MA1125.1 7.615145483691484 + +chr1 228458840 228458851 ZNF384_MA1125.1 9.348377887105972 - +chr1 228458841 228458852 ZNF384_MA1125.1 8.950914111858513 - +chr1 228458842 228458853 ZNF384_MA1125.1 10.767977395882749 - +chr1 228458843 228458854 ZNF384_MA1125.1 10.631583981668332 - +chr1 228458844 228458855 ZNF384_MA1125.1 10.319820058037195 - +chr1 228458859 228458870 ZNF384_MA1125.1 9.348377887105972 - +chr1 228458860 228458871 ZNF384_MA1125.1 9.466330947981877 - +chr1 228458861 228458872 ZNF384_MA1125.1 11.342318221560006 - +chr1 228458862 228458873 ZNF384_MA1125.1 11.342318221560006 - +chr1 228458863 228458874 ZNF384_MA1125.1 11.342318221560006 - +chr1 228458864 228458875 ZNF384_MA1125.1 11.342318221560006 - +chr1 228458865 228458876 ZNF384_MA1125.1 11.342318221560006 - +chr1 228458866 228458877 ZNF384_MA1125.1 11.342318221560006 - +chr1 228458867 228458878 ZNF384_MA1125.1 11.342318221560006 - +chr1 228458868 228458879 ZNF384_MA1125.1 11.342318221560006 - +chr1 228458869 228458880 ZNF384_MA1125.1 10.826901385436642 - +chr1 228458870 228458881 ZNF384_MA1125.1 10.767977395882749 - +chr1 228458871 228458882 ZNF384_MA1125.1 10.724199779316329 - +chr1 228458872 228458883 ZNF384_MA1125.1 9.675830533485527 - +chr1 228459027 228459038 ZNF384_MA1125.1 7.888753740052802 - +chr1 229035637 229035648 ZNF384_MA1125.1 8.231350367694198 - +chr1 229341975 229341986 ZNF384_MA1125.1 9.045771107467637 + +chr1 229341976 229341987 ZNF384_MA1125.1 9.722332670744789 + +chr1 229341977 229341988 ZNF384_MA1125.1 10.119281980306548 + +chr1 229341978 229341989 ZNF384_MA1125.1 10.826901385436646 + +chr1 229341979 229341990 ZNF384_MA1125.1 11.342318221560010 + +chr1 229341980 229341991 ZNF384_MA1125.1 9.466330947981877 + +chr1 229368022 229368033 ZNF384_MA1125.1 9.474479557574629 + +chr1 229480416 229480427 ZNF384_MA1125.1 7.525031379667027 + +chr1 230123286 230123297 ZNF384_MA1125.1 7.947440385927705 + +chr1 230123669 230123680 ZNF384_MA1125.1 7.651543387148081 - +chr1 230209038 230209049 ZNF384_MA1125.1 10.075918903984538 + +chr1 230209039 230209050 ZNF384_MA1125.1 11.125649044629185 + +chr1 230209040 230209051 ZNF384_MA1125.1 11.439639910232545 + +chr1 230209041 230209052 ZNF384_MA1125.1 11.434934019208008 + +chr1 230209042 230209053 ZNF384_MA1125.1 11.342318221560010 + +chr1 230209043 230209054 ZNF384_MA1125.1 9.466330947981877 + +chr1 230209044 230209055 ZNF384_MA1125.1 7.785371081519358 + +chr1 230209066 230209077 ZNF384_MA1125.1 8.384586690312151 - +chr1 230209067 230209078 ZNF384_MA1125.1 9.244843422916414 - +chr1 230209074 230209085 ZNF384_MA1125.1 8.115025686664218 - +chr1 230209418 230209429 ZNF384_MA1125.1 7.632893582163556 - +chr1 230209820 230209831 ZNF384_MA1125.1 10.933951898971689 + +chr1 230209821 230209832 ZNF384_MA1125.1 9.684835641786123 + +chr1 230209822 230209833 ZNF384_MA1125.1 11.174378123860667 + +chr1 230209823 230209834 ZNF384_MA1125.1 10.693622805983804 + +chr1 230209824 230209835 ZNF384_MA1125.1 11.342318221560010 + +chr1 230209825 230209836 ZNF384_MA1125.1 11.342318221560010 + +chr1 230209826 230209837 ZNF384_MA1125.1 11.342318221560010 + +chr1 230209827 230209838 ZNF384_MA1125.1 11.342318221560010 + +chr1 230209828 230209839 ZNF384_MA1125.1 9.466330947981877 + +chr1 230209829 230209840 ZNF384_MA1125.1 7.946526476801261 + +chr1 230212770 230212781 ZNF384_MA1125.1 9.025343363985632 - +chr1 230212846 230212857 ZNF384_MA1125.1 8.699682471529766 - +chr1 230212847 230212858 ZNF384_MA1125.1 8.557079637058331 - +chr1 230212848 230212859 ZNF384_MA1125.1 10.068269270990445 - +chr1 230212849 230212860 ZNF384_MA1125.1 9.278940337157440 - +chr1 230972695 230972706 ZNF384_MA1125.1 8.612891924368373 + +chr1 230978023 230978034 ZNF384_MA1125.1 8.155918619185037 - +chr1 230978024 230978035 ZNF384_MA1125.1 7.737804435591927 - +chr1 231338164 231338175 ZNF384_MA1125.1 8.176734538359893 - +chr1 231338165 231338176 ZNF384_MA1125.1 8.130282931531992 - +chr1 231528228 231528239 ZNF384_MA1125.1 8.141603709695042 + +chr1 231528401 231528412 ZNF384_MA1125.1 8.750028550033147 + +chr1 231612616 231612627 ZNF384_MA1125.1 8.904195885840268 - +chr1 231612617 231612628 ZNF384_MA1125.1 9.704746477390858 - +chr1 231612639 231612650 ZNF384_MA1125.1 8.797869088867142 - +chr1 231612781 231612792 ZNF384_MA1125.1 9.412000929801632 - +chr1 231756911 231756922 ZNF384_MA1125.1 8.809879298925781 - +chr1 231756912 231756923 ZNF384_MA1125.1 9.345730008029619 - +chr1 232597510 232597521 ZNF384_MA1125.1 7.913389734749515 + +chr1 232597520 232597531 ZNF384_MA1125.1 9.886972970928806 + +chr1 232597521 232597532 ZNF384_MA1125.1 10.068269270990449 + +chr1 232597522 232597533 ZNF384_MA1125.1 10.433066910636464 + +chr1 232597523 232597534 ZNF384_MA1125.1 10.693622805983804 + +chr1 232597524 232597535 ZNF384_MA1125.1 11.342318221560010 + +chr1 232597525 232597536 ZNF384_MA1125.1 11.342318221560010 + +chr1 232597526 232597537 ZNF384_MA1125.1 11.342318221560010 + +chr1 232597527 232597538 ZNF384_MA1125.1 11.342318221560010 + +chr1 232597528 232597539 ZNF384_MA1125.1 11.342318221560010 + +chr1 232597529 232597540 ZNF384_MA1125.1 11.342318221560010 + +chr1 232597530 232597541 ZNF384_MA1125.1 9.940466811255302 + +chr1 232597531 232597542 ZNF384_MA1125.1 8.418515842085245 + +chr1 232597686 232597697 ZNF384_MA1125.1 10.933951898971689 + +chr1 232597687 232597698 ZNF384_MA1125.1 9.684835641786123 + +chr1 232597688 232597699 ZNF384_MA1125.1 11.174378123860667 + +chr1 232597689 232597700 ZNF384_MA1125.1 10.693622805983804 + +chr1 232597690 232597701 ZNF384_MA1125.1 11.342318221560010 + +chr1 232597691 232597702 ZNF384_MA1125.1 11.342318221560010 + +chr1 232597692 232597703 ZNF384_MA1125.1 11.342318221560010 + +chr1 232597693 232597704 ZNF384_MA1125.1 11.342318221560010 + +chr1 232597694 232597705 ZNF384_MA1125.1 11.342318221560010 + +chr1 232597695 232597706 ZNF384_MA1125.1 11.342318221560010 + +chr1 232597696 232597707 ZNF384_MA1125.1 11.342318221560010 + +chr1 232597697 232597708 ZNF384_MA1125.1 11.342318221560010 + +chr1 232597698 232597709 ZNF384_MA1125.1 11.342318221560010 + +chr1 232597699 232597710 ZNF384_MA1125.1 11.342318221560010 + +chr1 232597700 232597711 ZNF384_MA1125.1 11.342318221560010 + +chr1 232597701 232597712 ZNF384_MA1125.1 11.342318221560010 + +chr1 232597702 232597713 ZNF384_MA1125.1 11.342318221560010 + +chr1 232597703 232597714 ZNF384_MA1125.1 11.342318221560010 + +chr1 232597704 232597715 ZNF384_MA1125.1 11.342318221560010 + +chr1 232597705 232597716 ZNF384_MA1125.1 9.466330947981877 + +chr1 232597706 232597717 ZNF384_MA1125.1 7.946526476801261 + +chr1 232600230 232600241 ZNF384_MA1125.1 10.900466026151026 + +chr1 232600231 232600242 ZNF384_MA1125.1 10.328825166337790 + +chr1 232600232 232600243 ZNF384_MA1125.1 11.081762326212669 + +chr1 232600233 232600244 ZNF384_MA1125.1 10.693622805983804 + +chr1 232600234 232600245 ZNF384_MA1125.1 9.940466811255302 + +chr1 232600235 232600246 ZNF384_MA1125.1 8.418515842085245 + +chr1 232600322 232600333 ZNF384_MA1125.1 8.155918619185037 - +chr1 232951168 232951179 ZNF384_MA1125.1 9.586405043512530 + +chr1 232951169 232951180 ZNF384_MA1125.1 9.847100138308530 + +chr1 232951170 232951181 ZNF384_MA1125.1 10.566345490089304 + +chr1 232951171 232951182 ZNF384_MA1125.1 9.291771395679095 + +chr1 232951172 232951183 ZNF384_MA1125.1 7.944379978811821 + +chr1 233282114 233282125 ZNF384_MA1125.1 9.285899259332972 + +chr1 233459646 233459657 ZNF384_MA1125.1 8.594216176374914 - +chr1 233459647 233459658 ZNF384_MA1125.1 8.436243619703227 - +chr1 234066093 234066104 ZNF384_MA1125.1 7.708111427066520 + +chr1 234066202 234066213 ZNF384_MA1125.1 8.756813252450584 - +chr1 234271294 234271305 ZNF384_MA1125.1 7.637460676462353 + +chr1 234356654 234356665 ZNF384_MA1125.1 9.348377887105972 - +chr1 234356655 234356666 ZNF384_MA1125.1 9.466330947981877 - +chr1 234356656 234356667 ZNF384_MA1125.1 11.342318221560006 - +chr1 234356657 234356668 ZNF384_MA1125.1 11.342318221560006 - +chr1 234356658 234356669 ZNF384_MA1125.1 11.342318221560006 - +chr1 234356659 234356670 ZNF384_MA1125.1 11.342318221560006 - +chr1 234356660 234356671 ZNF384_MA1125.1 11.342318221560006 - +chr1 234356661 234356672 ZNF384_MA1125.1 11.342318221560006 - +chr1 234356662 234356673 ZNF384_MA1125.1 10.693622805983800 - +chr1 234356663 234356674 ZNF384_MA1125.1 10.433066910636461 - +chr1 234356664 234356675 ZNF384_MA1125.1 10.160885068638443 - +chr1 234356665 234356676 ZNF384_MA1125.1 9.891678861953341 - +chr1 234488309 234488320 ZNF384_MA1125.1 7.594432222428154 - +chr1 234488310 234488321 ZNF384_MA1125.1 8.339157008433537 - +chr1 234488743 234488754 ZNF384_MA1125.1 10.319820058037198 + +chr1 234488744 234488755 ZNF384_MA1125.1 10.631583981668335 + +chr1 234488745 234488756 ZNF384_MA1125.1 8.891990122304620 + +chr1 234488789 234488800 ZNF384_MA1125.1 9.466330947981877 - +chr1 234488790 234488801 ZNF384_MA1125.1 11.342318221560006 - +chr1 234488791 234488802 ZNF384_MA1125.1 11.342318221560006 - +chr1 234488792 234488803 ZNF384_MA1125.1 10.693622805983800 - +chr1 234488793 234488804 ZNF384_MA1125.1 10.566345490089301 - +chr1 234488794 234488805 ZNF384_MA1125.1 9.754484340660529 - 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- +chr1 234963010 234963021 ZNF384_MA1125.1 10.650259729661791 - +chr1 234963101 234963112 ZNF384_MA1125.1 10.547294333155689 + +chr1 234963102 234963113 ZNF384_MA1125.1 8.278278340456872 + +chr1 234963103 234963114 ZNF384_MA1125.1 7.996804551456002 + +chr1 234963127 234963138 ZNF384_MA1125.1 9.348377887105972 - +chr1 234963128 234963139 ZNF384_MA1125.1 9.466330947981877 - +chr1 234963129 234963140 ZNF384_MA1125.1 11.342318221560006 - +chr1 234963130 234963141 ZNF384_MA1125.1 11.434934019208004 - +chr1 234963131 234963142 ZNF384_MA1125.1 11.439639910232541 - +chr1 234963132 234963143 ZNF384_MA1125.1 11.125649044629181 - +chr1 234963133 234963144 ZNF384_MA1125.1 10.075918903984535 - +chr1 234963243 234963254 ZNF384_MA1125.1 8.387591792070198 - +chr1 234963244 234963255 ZNF384_MA1125.1 9.184574612747717 - +chr1 234971595 234971606 ZNF384_MA1125.1 8.091840740000006 + +chr1 234972100 234972111 ZNF384_MA1125.1 8.211940298865352 + +chr1 234972101 234972112 ZNF384_MA1125.1 8.627907984469021 + 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11.342318221560010 + +chr1 235105502 235105513 ZNF384_MA1125.1 11.342318221560010 + +chr1 235105503 235105514 ZNF384_MA1125.1 11.342318221560010 + +chr1 235105504 235105515 ZNF384_MA1125.1 9.466330947981877 + +chr1 235105505 235105516 ZNF384_MA1125.1 7.785371081519358 + +chr1 235128289 235128300 ZNF384_MA1125.1 7.708826713671433 + +chr1 235128290 235128301 ZNF384_MA1125.1 7.819467995760386 + +chr1 235129014 235129025 ZNF384_MA1125.1 8.830490350275063 - +chr1 235328232 235328243 ZNF384_MA1125.1 8.139974909563003 - +chr1 235328233 235328244 ZNF384_MA1125.1 8.519328156344899 - +chr1 235866459 235866470 ZNF384_MA1125.1 9.064524191377611 + +chr1 235888090 235888101 ZNF384_MA1125.1 9.886972970928806 + +chr1 235888091 235888102 ZNF384_MA1125.1 10.068269270990449 + +chr1 235888092 235888103 ZNF384_MA1125.1 10.433066910636464 + +chr1 235888093 235888104 ZNF384_MA1125.1 10.693622805983804 + +chr1 235888094 235888105 ZNF384_MA1125.1 11.342318221560010 + +chr1 235888095 235888106 ZNF384_MA1125.1 11.342318221560010 + +chr1 235888096 235888107 ZNF384_MA1125.1 11.342318221560010 + +chr1 235888097 235888108 ZNF384_MA1125.1 11.342318221560010 + +chr1 235888098 235888109 ZNF384_MA1125.1 11.342318221560010 + +chr1 235888099 235888110 ZNF384_MA1125.1 11.342318221560010 + +chr1 235888100 235888111 ZNF384_MA1125.1 11.342318221560010 + +chr1 235888101 235888112 ZNF384_MA1125.1 11.342318221560010 + +chr1 235888102 235888113 ZNF384_MA1125.1 11.342318221560010 + +chr1 235888103 235888114 ZNF384_MA1125.1 11.342318221560010 + +chr1 235888104 235888115 ZNF384_MA1125.1 11.342318221560010 + +chr1 235888105 235888116 ZNF384_MA1125.1 11.342318221560010 + +chr1 235888106 235888117 ZNF384_MA1125.1 11.342318221560010 + +chr1 235888107 235888118 ZNF384_MA1125.1 11.342318221560010 + +chr1 235888108 235888119 ZNF384_MA1125.1 11.342318221560010 + +chr1 235888109 235888120 ZNF384_MA1125.1 11.342318221560010 + +chr1 235888110 235888121 ZNF384_MA1125.1 11.342318221560010 + +chr1 235888111 235888122 ZNF384_MA1125.1 9.940466811255302 + +chr1 235888112 235888123 ZNF384_MA1125.1 8.418515842085245 + +chr1 236282490 236282501 ZNF384_MA1125.1 8.656319395207756 - +chr1 236284749 236284760 ZNF384_MA1125.1 8.250575744385902 - +chr1 236284750 236284761 ZNF384_MA1125.1 9.024295444705613 - +chr1 236284751 236284762 ZNF384_MA1125.1 11.199213685343564 - +chr1 236284768 236284779 ZNF384_MA1125.1 9.212010415900490 + +chr1 236285082 236285093 ZNF384_MA1125.1 8.325879723583160 - +chr1 236285089 236285100 ZNF384_MA1125.1 9.348377887105972 - +chr1 236285090 236285101 ZNF384_MA1125.1 8.817635532405671 - +chr1 236285091 236285102 ZNF384_MA1125.1 11.174378123860663 - +chr1 236285092 236285103 ZNF384_MA1125.1 10.426146855010321 - +chr1 236285093 236285104 ZNF384_MA1125.1 11.199213685343564 - +chr1 236457820 236457831 ZNF384_MA1125.1 9.145661757704602 + +chr1 236457821 236457832 ZNF384_MA1125.1 10.068269270990449 + +chr1 236457822 236457833 ZNF384_MA1125.1 10.433066910636464 + +chr1 236457823 236457834 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236796079 ZNF384_MA1125.1 9.847100138308527 - +chr1 236796069 236796080 ZNF384_MA1125.1 10.101821879635891 - +chr1 238006482 238006493 ZNF384_MA1125.1 9.348377887105972 - +chr1 238006483 238006494 ZNF384_MA1125.1 9.466330947981877 - +chr1 238006484 238006495 ZNF384_MA1125.1 11.342318221560006 - +chr1 238006485 238006496 ZNF384_MA1125.1 11.342318221560006 - +chr1 238006486 238006497 ZNF384_MA1125.1 11.342318221560006 - +chr1 238006487 238006498 ZNF384_MA1125.1 11.342318221560006 - +chr1 238006488 238006499 ZNF384_MA1125.1 11.342318221560006 - +chr1 238006489 238006500 ZNF384_MA1125.1 11.342318221560006 - +chr1 238006490 238006501 ZNF384_MA1125.1 11.342318221560006 - +chr1 238006491 238006502 ZNF384_MA1125.1 11.342318221560006 - +chr1 238006492 238006503 ZNF384_MA1125.1 11.342318221560006 - +chr1 238006493 238006504 ZNF384_MA1125.1 11.342318221560006 - +chr1 238006494 238006505 ZNF384_MA1125.1 10.826901385436642 - +chr1 238006495 238006506 ZNF384_MA1125.1 10.860593193530747 - +chr1 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243589312 243589323 ZNF384_MA1125.1 11.342318221560010 + +chr1 243589313 243589324 ZNF384_MA1125.1 11.342318221560010 + +chr1 243589314 243589325 ZNF384_MA1125.1 9.466330947981877 + +chr1 243589315 243589326 ZNF384_MA1125.1 9.348377887105972 + +chr1 243589322 243589333 ZNF384_MA1125.1 10.319820058037198 + +chr1 243589323 243589334 ZNF384_MA1125.1 10.631583981668335 + +chr1 243589324 243589335 ZNF384_MA1125.1 8.891990122304620 + +chr1 243589325 243589336 ZNF384_MA1125.1 8.832961050982608 + +chr1 243589332 243589343 ZNF384_MA1125.1 8.325879723583160 + +chr1 243589339 243589350 ZNF384_MA1125.1 10.319820058037198 + +chr1 243589340 243589351 ZNF384_MA1125.1 9.229732571363627 + +chr1 243589341 243589352 ZNF384_MA1125.1 7.683019621126085 + +chr1 243589354 243589365 ZNF384_MA1125.1 9.064524191377611 + +chr1 243589513 243589524 ZNF384_MA1125.1 8.459599315712291 + +chr1 243596206 243596217 ZNF384_MA1125.1 8.671307059577556 + +chr1 243596902 243596913 ZNF384_MA1125.1 8.989713422946050 + +chr1 243727770 243727781 ZNF384_MA1125.1 8.443832784459065 + +chr1 243727771 243727782 ZNF384_MA1125.1 8.637643647214297 + +chr1 243727787 243727798 ZNF384_MA1125.1 9.671124642460992 + +chr1 243727788 243727799 ZNF384_MA1125.1 8.755596708090202 + +chr1 243727850 243727861 ZNF384_MA1125.1 8.737697374258259 + +chr1 243727851 243727862 ZNF384_MA1125.1 10.211730709230491 + +chr1 243728204 243728215 ZNF384_MA1125.1 8.021640112938901 - +chr1 244074739 244074750 ZNF384_MA1125.1 8.240179871966838 - +chr1 244074740 244074751 ZNF384_MA1125.1 9.230062396236573 - +chr1 244318906 244318917 ZNF384_MA1125.1 7.726457350187030 - +chr1 244324983 244324994 ZNF384_MA1125.1 8.257360446803343 - +chr1 244324984 244324995 ZNF384_MA1125.1 9.940466811255298 - +chr1 244324985 244324996 ZNF384_MA1125.1 11.434934019208004 - +chr1 244324986 244324997 ZNF384_MA1125.1 11.439639910232541 - +chr1 244324987 244324998 ZNF384_MA1125.1 11.733681678400544 - +chr1 244324988 244324999 ZNF384_MA1125.1 10.006270205110123 - +chr1 244325015 244325026 ZNF384_MA1125.1 7.662623643577662 + +chr1 244325527 244325538 ZNF384_MA1125.1 10.097115988611357 + +chr1 244325528 244325539 ZNF384_MA1125.1 8.352632930355822 + +chr1 244325529 244325540 ZNF384_MA1125.1 7.642543110614540 + +chr1 244461109 244461120 ZNF384_MA1125.1 8.637643647214297 - +chr1 244461110 244461121 ZNF384_MA1125.1 8.443832784459065 - +chr1 244653509 244653520 ZNF384_MA1125.1 8.612891924368373 - diff --git a/demo/known_tfbs_chr1_hg38/ZNF410_MA0752.1.bed b/demo/known_tfbs_chr1_hg38/ZNF410_MA0752.1.bed new file mode 100644 index 0000000..58a2c3e --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/ZNF410_MA0752.1.bed @@ -0,0 +1,113 @@ +chr1 1375411 1375427 ZNF410_MA0752.1 -4.293267918223377 + +chr1 3666352 3666368 ZNF410_MA0752.1 -1.443636008690127 + +chr1 3666423 3666439 ZNF410_MA0752.1 -2.899950509992816 - +chr1 6861414 6861430 ZNF410_MA0752.1 -1.342164248344581 + +chr1 7954121 7954137 ZNF410_MA0752.1 -3.666177872562500 - +chr1 7994057 7994073 ZNF410_MA0752.1 6.663598125496700 + +chr1 8167342 8167358 ZNF410_MA0752.1 0.611384346134085 - +chr1 10033069 10033085 ZNF410_MA0752.1 -3.085187173361971 + +chr1 12230620 12230636 ZNF410_MA0752.1 -3.233738941749996 + +chr1 15526595 15526611 ZNF410_MA0752.1 0.276680778336047 + +chr1 15617892 15617908 ZNF410_MA0752.1 -4.184384722957296 - +chr1 15975809 15975825 ZNF410_MA0752.1 1.502775031464450 + +chr1 28329236 28329252 ZNF410_MA0752.1 0.098930178546789 + +chr1 31549274 31549290 ZNF410_MA0752.1 -3.390779658161285 - +chr1 32992798 32992814 ZNF410_MA0752.1 -0.606741569563074 - +chr1 34530468 34530484 ZNF410_MA0752.1 -2.282736904960395 + +chr1 35031375 35031391 ZNF410_MA0752.1 -2.489344357238622 + +chr1 37514265 37514281 ZNF410_MA0752.1 -4.311091104709188 + +chr1 37692444 37692460 ZNF410_MA0752.1 -3.104696561708578 - +chr1 39215429 39215445 ZNF410_MA0752.1 -2.928061721396295 - +chr1 39215710 39215726 ZNF410_MA0752.1 -4.040176158731343 - +chr1 40450518 40450534 ZNF410_MA0752.1 1.982535325681741 - +chr1 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ZNF410_MA0752.1 -3.241126669859742 - +chr1 143214190 143214206 ZNF410_MA0752.1 -1.891391205602010 - +chr1 143214681 143214697 ZNF410_MA0752.1 -0.412113356569631 - +chr1 143216456 143216472 ZNF410_MA0752.1 -0.412113356569631 - +chr1 143223187 143223203 ZNF410_MA0752.1 -0.412113356569631 - +chr1 143223610 143223626 ZNF410_MA0752.1 -1.891391205602010 - +chr1 143232358 143232374 ZNF410_MA0752.1 -1.691931628541404 - +chr1 143232576 143232592 ZNF410_MA0752.1 -0.412113356569631 - +chr1 143238622 143238638 ZNF410_MA0752.1 -0.412113356569631 - +chr1 143248267 143248283 ZNF410_MA0752.1 -1.891391205602009 + +chr1 143252919 143252935 ZNF410_MA0752.1 -3.236795138588661 + diff --git a/demo/known_tfbs_chr1_hg38/ZNF740_MA0753.1.bed b/demo/known_tfbs_chr1_hg38/ZNF740_MA0753.1.bed new file mode 100644 index 0000000..dc237ab --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/ZNF740_MA0753.1.bed @@ -0,0 +1,918 @@ +chr1 181530 181539 ZNF740_MA0753.1 8.743443856119509 - +chr1 181531 181540 ZNF740_MA0753.1 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1020061 1020070 ZNF740_MA0753.1 7.981890179973035 + +chr1 1020062 1020071 ZNF740_MA0753.1 8.807125017114158 + +chr1 1033306 1033315 ZNF740_MA0753.1 7.961567019922530 + +chr1 1308552 1308561 ZNF740_MA0753.1 7.412744729549820 - +chr1 1308553 1308562 ZNF740_MA0753.1 9.802274121871271 - +chr1 1308554 1308563 ZNF740_MA0753.1 9.327910479734390 - +chr1 1308555 1308564 ZNF740_MA0753.1 10.439377349458303 - +chr1 1308556 1308565 ZNF740_MA0753.1 10.439377349458303 - +chr1 1308557 1308566 ZNF740_MA0753.1 9.482055261225680 - +chr1 1349417 1349426 ZNF740_MA0753.1 7.849802928881537 - +chr1 1630218 1630227 ZNF740_MA0753.1 7.849802928881536 + +chr1 1678274 1678283 ZNF740_MA0753.1 7.108867124639642 + +chr1 1693151 1693160 ZNF740_MA0753.1 8.690807252147358 - +chr1 1693152 1693161 ZNF740_MA0753.1 7.645523677663619 - +chr1 1746430 1746439 ZNF740_MA0753.1 8.690807252147358 - +chr1 1746431 1746440 ZNF740_MA0753.1 7.645523677663619 - +chr1 1890669 1890678 ZNF740_MA0753.1 7.733485163914734 + +chr1 1909228 1909237 ZNF740_MA0753.1 11.738660288020098 - +chr1 1909229 1909238 ZNF740_MA0753.1 8.836678586074754 - +chr1 1909230 1909239 ZNF740_MA0753.1 10.439377349458303 - +chr1 1909231 1909240 ZNF740_MA0753.1 10.439377349458303 - +chr1 1909232 1909241 ZNF740_MA0753.1 10.439377349458303 - +chr1 1909233 1909242 ZNF740_MA0753.1 10.439377349458303 - +chr1 1909234 1909243 ZNF740_MA0753.1 10.439377349458303 - +chr1 1909235 1909244 ZNF740_MA0753.1 8.756990547387533 - +chr1 1919702 1919711 ZNF740_MA0753.1 7.560435011093807 + +chr1 2133491 2133500 ZNF740_MA0753.1 7.404378985164339 + +chr1 2133527 2133536 ZNF740_MA0753.1 7.745970352226673 + +chr1 2133528 2133537 ZNF740_MA0753.1 8.041482212751371 + +chr1 2133529 2133538 ZNF740_MA0753.1 8.312362049886939 + +chr1 2133530 2133539 ZNF740_MA0753.1 9.281173118534831 + +chr1 2300858 2300867 ZNF740_MA0753.1 9.340765151313168 + +chr1 2391593 2391602 ZNF740_MA0753.1 8.166490715959545 - +chr1 2391595 2391604 ZNF740_MA0753.1 7.221653816038861 - +chr1 2526699 2526708 ZNF740_MA0753.1 7.961567019922530 + +chr1 2548050 2548059 ZNF740_MA0753.1 7.108867124639643 - +chr1 2556055 2556064 ZNF740_MA0753.1 7.108867124639642 + +chr1 2556705 2556714 ZNF740_MA0753.1 7.442554527404923 + +chr1 2578423 2578432 ZNF740_MA0753.1 7.961567019922530 + +chr1 2585886 2585895 ZNF740_MA0753.1 7.961567019922530 - +chr1 2586131 2586140 ZNF740_MA0753.1 8.282808480926345 + +chr1 2586138 2586147 ZNF740_MA0753.1 7.358266492080904 + +chr1 2655731 2655740 ZNF740_MA0753.1 8.520936754600658 + +chr1 3666597 3666606 ZNF740_MA0753.1 7.590249250141467 + +chr1 3677545 3677554 ZNF740_MA0753.1 8.756856582347019 - +chr1 3677578 3677587 ZNF740_MA0753.1 7.442554527404923 + +chr1 3900023 3900032 ZNF740_MA0753.1 7.786121767886886 + +chr1 3900328 3900337 ZNF740_MA0753.1 8.756990547387531 + +chr1 3900329 3900338 ZNF740_MA0753.1 10.439377349458301 + +chr1 3900330 3900339 ZNF740_MA0753.1 10.439377349458301 + +chr1 3900331 3900340 ZNF740_MA0753.1 10.439377349458301 + +chr1 3900332 3900341 ZNF740_MA0753.1 10.439377349458301 + +chr1 3900333 3900342 ZNF740_MA0753.1 10.439377349458301 + +chr1 3900334 3900343 ZNF740_MA0753.1 10.439377349458301 + +chr1 3900335 3900344 ZNF740_MA0753.1 10.439377349458301 + +chr1 3900336 3900345 ZNF740_MA0753.1 10.439377349458301 + +chr1 3900337 3900346 ZNF740_MA0753.1 10.439377349458301 + +chr1 3900338 3900347 ZNF740_MA0753.1 7.981890179973035 + +chr1 3900339 3900348 ZNF740_MA0753.1 7.695658147390245 + +chr1 6359587 6359596 ZNF740_MA0753.1 7.786121767886886 + +chr1 6490772 6490781 ZNF740_MA0753.1 7.108867124639643 - +chr1 6490778 6490787 ZNF740_MA0753.1 7.358266492080906 - +chr1 6614139 6614148 ZNF740_MA0753.1 7.108867124639642 + +chr1 6784750 6784759 ZNF740_MA0753.1 7.961567019922530 + +chr1 6785247 6785256 ZNF740_MA0753.1 7.590249250141467 - +chr1 6785728 6785737 ZNF740_MA0753.1 7.444160917557712 - +chr1 6785729 6785738 ZNF740_MA0753.1 10.781338199787475 - +chr1 7954375 7954384 ZNF740_MA0753.1 9.281173118534833 - +chr1 7954376 7954385 ZNF740_MA0753.1 8.836678586074754 - +chr1 7954377 7954386 ZNF740_MA0753.1 9.482055261225680 - +chr1 7961525 7961534 ZNF740_MA0753.1 7.658378349242398 - +chr1 7961845 7961854 ZNF740_MA0753.1 8.087931202555849 - +chr1 8026123 8026132 ZNF740_MA0753.1 7.590249250141467 + +chr1 8026129 8026138 ZNF740_MA0753.1 7.108867124639642 + +chr1 8878095 8878104 ZNF740_MA0753.1 7.961567019922530 - +chr1 9129390 9129399 ZNF740_MA0753.1 9.482055261225678 + +chr1 9129391 9129400 ZNF740_MA0753.1 10.439377349458301 + +chr1 9129392 9129401 ZNF740_MA0753.1 7.981890179973035 + +chr1 9129393 9129402 ZNF740_MA0753.1 8.807125017114158 + +chr1 9413317 9413326 ZNF740_MA0753.1 9.045253290788471 - +chr1 9413528 9413537 ZNF740_MA0753.1 7.362866488717700 - +chr1 9540082 9540091 ZNF740_MA0753.1 8.844952033638647 + +chr1 9540083 9540092 ZNF740_MA0753.1 7.412744729549818 + +chr1 9687442 9687451 ZNF740_MA0753.1 8.756856582347019 - +chr1 9910262 9910271 ZNF740_MA0753.1 7.590249250141467 - +chr1 10032803 10032812 ZNF740_MA0753.1 7.590249250141467 + +chr1 10940157 10940166 ZNF740_MA0753.1 9.043052956413746 + +chr1 11012419 11012428 ZNF740_MA0753.1 9.043052956413748 - +chr1 11273097 11273106 ZNF740_MA0753.1 7.358266492080904 + +chr1 11664525 11664534 ZNF740_MA0753.1 7.358266492080906 - +chr1 11680763 11680772 ZNF740_MA0753.1 9.045253290788471 + +chr1 11805759 11805768 ZNF740_MA0753.1 7.879356497842130 + +chr1 11805760 11805769 ZNF740_MA0753.1 10.135961524636548 + +chr1 11980138 11980147 ZNF740_MA0753.1 8.323851030302208 + +chr1 12047656 12047665 ZNF740_MA0753.1 7.362866488717700 - +chr1 12078639 12078648 ZNF740_MA0753.1 11.214343751832283 + +chr1 12078640 12078649 ZNF740_MA0753.1 7.444160917557712 + +chr1 12079371 12079380 ZNF740_MA0753.1 8.844952033638647 + +chr1 12079372 12079381 ZNF740_MA0753.1 7.412744729549818 + +chr1 12079396 12079405 ZNF740_MA0753.1 7.560435011093807 + +chr1 12230501 12230510 ZNF740_MA0753.1 7.738066387929621 - +chr1 12620185 12620194 ZNF740_MA0753.1 7.961567019922530 + 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7.358266492080904 + +chr1 20787316 20787325 ZNF740_MA0753.1 7.754705579878994 + +chr1 21176460 21176469 ZNF740_MA0753.1 7.849802928881537 - +chr1 21176674 21176683 ZNF740_MA0753.1 7.344786952386005 - +chr1 21176675 21176684 ZNF740_MA0753.1 9.327910479734390 - +chr1 21176676 21176685 ZNF740_MA0753.1 9.482055261225680 - +chr1 21866192 21866201 ZNF740_MA0753.1 7.933786421064558 - +chr1 22025913 22025922 ZNF740_MA0753.1 10.056273485949326 + +chr1 22025914 22025923 ZNF740_MA0753.1 7.444160917557712 + +chr1 22052872 22052881 ZNF740_MA0753.1 7.437250483734717 - +chr1 22053262 22053271 ZNF740_MA0753.1 7.444160917557712 - +chr1 22053263 22053272 ZNF740_MA0753.1 10.781338199787475 - +chr1 23344092 23344101 ZNF740_MA0753.1 9.045253290788471 + +chr1 23344182 23344191 ZNF740_MA0753.1 9.043052956413746 + +chr1 23344292 23344301 ZNF740_MA0753.1 7.108867124639642 + +chr1 23344299 23344308 ZNF740_MA0753.1 7.743770017851947 + +chr1 23344300 23344309 ZNF740_MA0753.1 7.645523677663618 + +chr1 23344301 23344310 ZNF740_MA0753.1 7.344786952386003 + +chr1 23484684 23484693 ZNF740_MA0753.1 7.745970352226673 + +chr1 23484686 23484695 ZNF740_MA0753.1 8.282808480926345 + +chr1 23778333 23778342 ZNF740_MA0753.1 7.745970352226673 + +chr1 23778334 23778343 ZNF740_MA0753.1 8.041482212751371 + +chr1 23778335 23778344 ZNF740_MA0753.1 7.457573643785222 + +chr1 23778336 23778345 ZNF740_MA0753.1 8.807125017114158 + +chr1 23778344 23778353 ZNF740_MA0753.1 7.849802928881536 + +chr1 23838689 23838698 ZNF740_MA0753.1 7.404378985164339 + +chr1 23838725 23838734 ZNF740_MA0753.1 7.404378985164339 + +chr1 23909020 23909029 ZNF740_MA0753.1 7.961567019922530 - +chr1 23980614 23980623 ZNF740_MA0753.1 7.442554527404923 + +chr1 24643481 24643490 ZNF740_MA0753.1 8.041482212751371 + +chr1 24643482 24643491 ZNF740_MA0753.1 9.915060813270488 + +chr1 24643483 24643492 ZNF740_MA0753.1 10.439377349458301 + +chr1 24643484 24643493 ZNF740_MA0753.1 10.439377349458301 + +chr1 24643485 24643494 ZNF740_MA0753.1 10.439377349458301 + +chr1 24643486 24643495 ZNF740_MA0753.1 10.439377349458301 + +chr1 24643487 24643496 ZNF740_MA0753.1 10.439377349458301 + +chr1 24643488 24643497 ZNF740_MA0753.1 7.981890179973035 + +chr1 24643489 24643498 ZNF740_MA0753.1 7.695658147390245 + +chr1 24745084 24745093 ZNF740_MA0753.1 7.124738215043387 + +chr1 24745086 24745095 ZNF740_MA0753.1 7.700005313865880 + +chr1 25022389 25022398 ZNF740_MA0753.1 7.362866488717700 - +chr1 25022456 25022465 ZNF740_MA0753.1 8.807125017114160 - +chr1 25430934 25430943 ZNF740_MA0753.1 8.844952033638647 + +chr1 25430935 25430944 ZNF740_MA0753.1 7.412744729549818 + +chr1 25543761 25543770 ZNF740_MA0753.1 8.323851030302210 - +chr1 25549818 25549827 ZNF740_MA0753.1 7.590249250141467 - +chr1 25616576 25616585 ZNF740_MA0753.1 8.229298281589257 - +chr1 25905706 25905715 ZNF740_MA0753.1 7.879356497842130 + +chr1 25905707 25905716 ZNF740_MA0753.1 10.135961524636548 + +chr1 25905708 25905717 ZNF740_MA0753.1 8.743443856119509 + +chr1 25906521 25906530 ZNF740_MA0753.1 7.358266492080904 + +chr1 26110994 26111003 ZNF740_MA0753.1 7.849802928881537 - +chr1 26306827 26306836 ZNF740_MA0753.1 7.444160917557712 - +chr1 26306828 26306837 ZNF740_MA0753.1 11.738660288020098 - +chr1 26306829 26306838 ZNF740_MA0753.1 8.836678586074754 - +chr1 26306830 26306839 ZNF740_MA0753.1 10.439377349458303 - +chr1 26306831 26306840 ZNF740_MA0753.1 10.439377349458303 - +chr1 26306832 26306841 ZNF740_MA0753.1 10.439377349458303 - +chr1 26306833 26306842 ZNF740_MA0753.1 9.915060813270490 - +chr1 26306834 26306843 ZNF740_MA0753.1 8.041482212751372 - +chr1 26306835 26306844 ZNF740_MA0753.1 7.745970352226674 - +chr1 26472307 26472316 ZNF740_MA0753.1 7.108867124639642 + +chr1 26472341 26472350 ZNF740_MA0753.1 8.312362049886939 + +chr1 26472342 26472351 ZNF740_MA0753.1 11.738660288020096 + +chr1 26472344 26472353 ZNF740_MA0753.1 8.028509186393588 + +chr1 26472353 26472362 ZNF740_MA0753.1 7.404378985164339 + +chr1 26620481 26620490 ZNF740_MA0753.1 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37514818 ZNF740_MA0753.1 7.849802928881536 + +chr1 37692307 37692316 ZNF740_MA0753.1 7.590249250141467 - +chr1 37808583 37808592 ZNF740_MA0753.1 9.045253290788471 + +chr1 38047030 38047039 ZNF740_MA0753.1 7.754705579878994 + +chr1 38873281 38873290 ZNF740_MA0753.1 7.207529270686873 + +chr1 38990975 38990984 ZNF740_MA0753.1 7.961567019922530 + +chr1 38991042 38991051 ZNF740_MA0753.1 7.124738215043389 - +chr1 38991074 38991083 ZNF740_MA0753.1 9.045253290788471 - +chr1 38991649 38991658 ZNF740_MA0753.1 7.140745092735960 - +chr1 38991650 38991659 ZNF740_MA0753.1 10.135961524636549 - +chr1 38991651 38991660 ZNF740_MA0753.1 8.312362049886941 - +chr1 38991652 38991661 ZNF740_MA0753.1 8.041482212751372 - +chr1 38991653 38991662 ZNF740_MA0753.1 7.745970352226674 - +chr1 38991662 38991671 ZNF740_MA0753.1 7.961567019922530 - +chr1 39788919 39788928 ZNF740_MA0753.1 9.669871330063563 - +chr1 39901927 39901936 ZNF740_MA0753.1 8.807125017114158 + +chr1 39996102 39996111 ZNF740_MA0753.1 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42767138 ZNF740_MA0753.1 8.518736420225933 + +chr1 42817049 42817058 ZNF740_MA0753.1 7.358266492080904 + +chr1 42931939 42931948 ZNF740_MA0753.1 7.440354193030197 + +chr1 42959033 42959042 ZNF740_MA0753.1 7.242253270255100 + +chr1 42959034 42959043 ZNF740_MA0753.1 7.109328904728068 + +chr1 43172454 43172463 ZNF740_MA0753.1 7.560435011093807 - +chr1 43367733 43367742 ZNF740_MA0753.1 7.961567019922530 - +chr1 43650319 43650328 ZNF740_MA0753.1 7.961567019922530 - +chr1 43650333 43650342 ZNF740_MA0753.1 9.045253290788471 - +chr1 43836658 43836667 ZNF740_MA0753.1 9.045253290788471 - +chr1 44030573 44030582 ZNF740_MA0753.1 7.590249250141467 - +chr1 44632622 44632631 ZNF740_MA0753.1 8.323851030302210 - +chr1 44731397 44731406 ZNF740_MA0753.1 7.108867124639642 + +chr1 44800224 44800233 ZNF740_MA0753.1 7.961567019922530 - +chr1 45303570 45303579 ZNF740_MA0753.1 7.961567019922530 - +chr1 45326805 45326814 ZNF740_MA0753.1 7.961567019922530 - +chr1 45326811 45326820 ZNF740_MA0753.1 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51236471 ZNF740_MA0753.1 7.849802928881537 - +chr1 51501463 51501472 ZNF740_MA0753.1 7.213749851741808 - +chr1 51519145 51519154 ZNF740_MA0753.1 7.961567019922530 - +chr1 51519364 51519373 ZNF740_MA0753.1 7.590249250141467 + +chr1 51729553 51729562 ZNF740_MA0753.1 7.358266492080904 + +chr1 51729806 51729815 ZNF740_MA0753.1 9.340765151313169 - +chr1 52055469 52055478 ZNF740_MA0753.1 7.440354193030197 + +chr1 52056887 52056896 ZNF740_MA0753.1 7.560435011093807 + +chr1 52553098 52553107 ZNF740_MA0753.1 10.056273485949328 - +chr1 52553630 52553639 ZNF740_MA0753.1 9.045253290788471 - +chr1 52726356 52726365 ZNF740_MA0753.1 9.281173118534833 - +chr1 52726357 52726366 ZNF740_MA0753.1 7.879356497842132 - +chr1 54406845 54406854 ZNF740_MA0753.1 7.124738215043387 + +chr1 54489473 54489482 ZNF740_MA0753.1 7.700005313865880 - +chr1 54489475 54489484 ZNF740_MA0753.1 8.282808480926347 - +chr1 54489477 54489486 ZNF740_MA0753.1 7.221653816038861 - +chr1 56579602 56579611 ZNF740_MA0753.1 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71080663 ZNF740_MA0753.1 7.404378985164341 - +chr1 74732596 74732605 ZNF740_MA0753.1 8.807125017114160 - +chr1 74732597 74732606 ZNF740_MA0753.1 7.981890179973036 - +chr1 74732598 74732607 ZNF740_MA0753.1 10.439377349458303 - +chr1 74732599 74732608 ZNF740_MA0753.1 10.439377349458303 - +chr1 74732600 74732609 ZNF740_MA0753.1 10.439377349458303 - +chr1 74732601 74732610 ZNF740_MA0753.1 10.439377349458303 - +chr1 74732602 74732611 ZNF740_MA0753.1 10.439377349458303 - +chr1 74732603 74732612 ZNF740_MA0753.1 10.439377349458303 - +chr1 74732604 74732613 ZNF740_MA0753.1 10.439377349458303 - +chr1 74732605 74732614 ZNF740_MA0753.1 10.439377349458303 - +chr1 74732606 74732615 ZNF740_MA0753.1 10.439377349458303 - +chr1 74732607 74732616 ZNF740_MA0753.1 9.915060813270490 - +chr1 74732608 74732617 ZNF740_MA0753.1 8.041482212751372 - +chr1 74732642 74732651 ZNF740_MA0753.1 7.700005313865880 - +chr1 75724363 75724372 ZNF740_MA0753.1 8.085730868181123 + +chr1 75785166 75785175 ZNF740_MA0753.1 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84970259 ZNF740_MA0753.1 8.219127319931696 + +chr1 84970259 84970268 ZNF740_MA0753.1 9.043052956413746 + +chr1 84970266 84970275 ZNF740_MA0753.1 7.738066387929619 + +chr1 84970267 84970276 ZNF740_MA0753.1 8.219127319931696 + +chr1 84997778 84997787 ZNF740_MA0753.1 7.745970352226674 - +chr1 85048133 85048142 ZNF740_MA0753.1 8.087931202555849 + +chr1 85048678 85048687 ZNF740_MA0753.1 9.045253290788471 + +chr1 85048781 85048790 ZNF740_MA0753.1 7.108867124639642 + +chr1 85201760 85201769 ZNF740_MA0753.1 7.961567019922530 - +chr1 85259223 85259232 ZNF740_MA0753.1 7.560435011093807 - +chr1 85259227 85259236 ZNF740_MA0753.1 7.108867124639643 - +chr1 85259262 85259271 ZNF740_MA0753.1 8.028509186393588 - +chr1 85259264 85259273 ZNF740_MA0753.1 8.518736420225935 - +chr1 86705354 86705363 ZNF740_MA0753.1 7.658378349242397 + +chr1 86913741 86913750 ZNF740_MA0753.1 7.560435011093807 + +chr1 87329038 87329047 ZNF740_MA0753.1 7.786121767886886 + +chr1 87335098 87335107 ZNF740_MA0753.1 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90358659 ZNF740_MA0753.1 9.340765151313169 - +chr1 91021634 91021643 ZNF740_MA0753.1 9.482055261225678 + +chr1 91021635 91021644 ZNF740_MA0753.1 10.439377349458301 + +chr1 91021636 91021645 ZNF740_MA0753.1 8.836678586074752 + +chr1 91021637 91021646 ZNF740_MA0753.1 10.627193418296184 + +chr1 91165744 91165753 ZNF740_MA0753.1 7.560435011093807 - +chr1 91404422 91404431 ZNF740_MA0753.1 7.598786316464060 + +chr1 91501356 91501365 ZNF740_MA0753.1 7.961567019922530 + +chr1 92832300 92832309 ZNF740_MA0753.1 7.440354193030199 - +chr1 92961183 92961192 ZNF740_MA0753.1 7.358266492080906 - +chr1 93079214 93079223 ZNF740_MA0753.1 7.849802928881536 + +chr1 93079635 93079644 ZNF740_MA0753.1 9.045253290788471 - +chr1 93179638 93179647 ZNF740_MA0753.1 7.362866488717700 - +chr1 93345451 93345460 ZNF740_MA0753.1 7.442554527404923 + +chr1 93681529 93681538 ZNF740_MA0753.1 7.961567019922530 - +chr1 93704331 93704340 ZNF740_MA0753.1 9.045253290788471 - +chr1 93848001 93848010 ZNF740_MA0753.1 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185045752 185045761 ZNF740_MA0753.1 7.221653816038861 - +chr1 185046113 185046122 ZNF740_MA0753.1 9.045253290788471 - +chr1 185156824 185156833 ZNF740_MA0753.1 7.590249250141467 - +chr1 185317718 185317727 ZNF740_MA0753.1 7.675258822299908 + +chr1 185317788 185317797 ZNF740_MA0753.1 7.213256248083104 - +chr1 185637334 185637343 ZNF740_MA0753.1 7.786121767886886 - +chr1 186375742 186375751 ZNF740_MA0753.1 7.412744729549820 - +chr1 186375743 186375752 ZNF740_MA0753.1 8.844952033638648 - +chr1 186512354 186512363 ZNF740_MA0753.1 8.520936754600658 - +chr1 186680509 186680518 ZNF740_MA0753.1 7.658378349242397 + +chr1 191174108 191174117 ZNF740_MA0753.1 7.437250483734717 + +chr1 193059306 193059315 ZNF740_MA0753.1 7.700005313865880 + +chr1 193071033 193071042 ZNF740_MA0753.1 7.590249250141467 - +chr1 193122188 193122197 ZNF740_MA0753.1 9.802274121871271 - +chr1 193122189 193122198 ZNF740_MA0753.1 7.645523677663619 - +chr1 193217115 193217124 ZNF740_MA0753.1 8.520936754600658 - +chr1 193438164 193438173 ZNF740_MA0753.1 7.738066387929621 - +chr1 195195906 195195915 ZNF740_MA0753.1 8.085730868181123 + +chr1 197201324 197201333 ZNF740_MA0753.1 7.108867124639642 + +chr1 197775125 197775134 ZNF740_MA0753.1 10.781338199787474 + +chr1 198157472 198157481 ZNF740_MA0753.1 7.560435011093807 - +chr1 198159032 198159041 ZNF740_MA0753.1 7.175688777678067 - +chr1 200409428 200409437 ZNF740_MA0753.1 7.412744729549820 - +chr1 200409429 200409438 ZNF740_MA0753.1 9.802274121871271 - +chr1 200409430 200409439 ZNF740_MA0753.1 8.370588391501768 - +chr1 200628449 200628458 ZNF740_MA0753.1 7.108867124639642 + +chr1 200739414 200739423 ZNF740_MA0753.1 7.931586086689832 + +chr1 200866998 200867007 ZNF740_MA0753.1 7.358266492080904 + +chr1 201019619 201019628 ZNF740_MA0753.1 7.459125576705809 - +chr1 201512170 201512179 ZNF740_MA0753.1 7.590249250141467 - +chr1 201829590 201829599 ZNF740_MA0753.1 7.961567019922530 - +chr1 202616012 202616021 ZNF740_MA0753.1 8.518736420225933 + +chr1 202957983 202957992 ZNF740_MA0753.1 7.560435011093807 - +chr1 202967325 202967334 ZNF740_MA0753.1 8.323851030302210 - +chr1 202967350 202967359 ZNF740_MA0753.1 8.807125017114160 - +chr1 202967351 202967360 ZNF740_MA0753.1 7.981890179973036 - +chr1 202967352 202967361 ZNF740_MA0753.1 10.439377349458303 - +chr1 202967353 202967362 ZNF740_MA0753.1 10.439377349458303 - +chr1 202967354 202967363 ZNF740_MA0753.1 10.439377349458303 - +chr1 202967355 202967364 ZNF740_MA0753.1 10.439377349458303 - +chr1 202967356 202967365 ZNF740_MA0753.1 10.439377349458303 - +chr1 202967357 202967366 ZNF740_MA0753.1 10.439377349458303 - +chr1 202967358 202967367 ZNF740_MA0753.1 9.915060813270490 - +chr1 202967359 202967368 ZNF740_MA0753.1 8.041482212751372 - +chr1 202967360 202967369 ZNF740_MA0753.1 7.221653816038861 - +chr1 203026453 203026462 ZNF740_MA0753.1 7.457573643785223 - +chr1 203026454 203026463 ZNF740_MA0753.1 7.517165676563559 - +chr1 203287509 203287518 ZNF740_MA0753.1 8.816448615125356 - +chr1 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212608334 212608343 ZNF740_MA0753.1 8.807125017114158 + +chr1 212699255 212699264 ZNF740_MA0753.1 8.041482212751371 + +chr1 212699256 212699265 ZNF740_MA0753.1 8.312362049886939 + diff --git a/demo/known_tfbs_chr1_hg38/ZSCAN4_MA1155.1.bed b/demo/known_tfbs_chr1_hg38/ZSCAN4_MA1155.1.bed new file mode 100644 index 0000000..5832384 --- /dev/null +++ b/demo/known_tfbs_chr1_hg38/ZSCAN4_MA1155.1.bed @@ -0,0 +1,800 @@ +chr1 181606 181620 ZSCAN4_MA1155.1 3.570412557649372 + +chr1 827690 827704 ZSCAN4_MA1155.1 1.536856871575227 - +chr1 1013444 1013458 ZSCAN4_MA1155.1 0.337564340995533 - +chr1 1033376 1033390 ZSCAN4_MA1155.1 1.976684538930489 + +chr1 2653319 2653333 ZSCAN4_MA1155.1 1.473103471480333 + +chr1 3491559 3491573 ZSCAN4_MA1155.1 0.970408810284644 + +chr1 3491561 3491575 ZSCAN4_MA1155.1 1.780061767235488 + +chr1 3656257 3656271 ZSCAN4_MA1155.1 2.801974670911728 + +chr1 3677441 3677455 ZSCAN4_MA1155.1 6.798904985147740 - +chr1 6235509 6235523 ZSCAN4_MA1155.1 7.095329279112117 + +chr1 6625076 6625090 ZSCAN4_MA1155.1 1.014449725334894 - +chr1 6822795 6822809 ZSCAN4_MA1155.1 2.852954760387753 + +chr1 6822797 6822811 ZSCAN4_MA1155.1 2.852954760387753 + +chr1 6822799 6822813 ZSCAN4_MA1155.1 2.852954760387753 + +chr1 6822801 6822815 ZSCAN4_MA1155.1 2.852954760387753 + +chr1 6822803 6822817 ZSCAN4_MA1155.1 2.852954760387753 + +chr1 6822805 6822819 ZSCAN4_MA1155.1 2.852954760387753 + +chr1 6822807 6822821 ZSCAN4_MA1155.1 2.852954760387753 + +chr1 6822809 6822823 ZSCAN4_MA1155.1 2.852954760387753 + +chr1 6822811 6822825 ZSCAN4_MA1155.1 2.852954760387753 + +chr1 6822813 6822827 ZSCAN4_MA1155.1 4.462392588433674 + +chr1 6822815 6822829 ZSCAN4_MA1155.1 4.331547550630060 + +chr1 6822829 6822843 ZSCAN4_MA1155.1 1.271411681796097 + +chr1 6822831 6822845 ZSCAN4_MA1155.1 5.144364055908590 + +chr1 6822839 6822853 ZSCAN4_MA1155.1 1.979105883295962 + +chr1 8167510 8167524 ZSCAN4_MA1155.1 4.243010296723313 + +chr1 8167512 8167526 ZSCAN4_MA1155.1 2.852954760387753 + +chr1 8167514 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221167572 221167586 ZSCAN4_MA1155.1 2.852954760387753 - +chr1 221167574 221167588 ZSCAN4_MA1155.1 2.852954760387753 - +chr1 221167576 221167590 ZSCAN4_MA1155.1 2.852954760387753 - +chr1 221167578 221167592 ZSCAN4_MA1155.1 2.852954760387753 - +chr1 221167580 221167594 ZSCAN4_MA1155.1 2.852954760387753 - +chr1 221167582 221167596 ZSCAN4_MA1155.1 2.852954760387753 - +chr1 221167584 221167598 ZSCAN4_MA1155.1 2.852954760387753 - +chr1 221167586 221167600 ZSCAN4_MA1155.1 2.852954760387753 - +chr1 221167588 221167602 ZSCAN4_MA1155.1 4.129673129909233 - +chr1 221167594 221167608 ZSCAN4_MA1155.1 2.766836355639416 - +chr1 221741864 221741878 ZSCAN4_MA1155.1 2.572745172968167 + +chr1 221741876 221741890 ZSCAN4_MA1155.1 5.608265920151539 + +chr1 221741888 221741902 ZSCAN4_MA1155.1 1.325113575122076 + +chr1 221741890 221741904 ZSCAN4_MA1155.1 8.263605490969228 + +chr1 221741896 221741910 ZSCAN4_MA1155.1 1.702111781980683 + +chr1 221794245 221794259 ZSCAN4_MA1155.1 0.977821947020538 + +chr1 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222712394 Zfx_MA0146.2 8.462030892157507 + +chr1 222712530 222712543 Zfx_MA0146.2 10.810434464667996 - +chr1 222772727 222772740 Zfx_MA0146.2 7.511294334995090 + +chr1 223081456 223081469 Zfx_MA0146.2 9.601588179852573 + +chr1 223143319 223143332 Zfx_MA0146.2 9.312404551530765 - +chr1 223143507 223143520 Zfx_MA0146.2 8.090861306234121 - +chr1 223190012 223190025 Zfx_MA0146.2 9.154249431448779 + +chr1 223363995 223364008 Zfx_MA0146.2 10.087445771910376 + +chr1 223364634 223364647 Zfx_MA0146.2 11.082824320145065 + +chr1 223364645 223364658 Zfx_MA0146.2 8.128157427199062 + +chr1 223712456 223712469 Zfx_MA0146.2 7.858640028100026 - +chr1 223712472 223712485 Zfx_MA0146.2 7.551692950531625 - +chr1 223712761 223712774 Zfx_MA0146.2 7.544780063638499 - +chr1 223726628 223726641 Zfx_MA0146.2 8.414083967840341 - +chr1 223726905 223726918 Zfx_MA0146.2 10.013469047124154 - +chr1 223846209 223846222 Zfx_MA0146.2 8.552352522075083 - +chr1 223846416 223846429 Zfx_MA0146.2 10.318051452532760 - +chr1 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Zfx_MA0146.2 8.155104487255411 - +chr1 226870396 226870409 Zfx_MA0146.2 8.582513277695321 + +chr1 226870397 226870410 Zfx_MA0146.2 10.231385656098094 - +chr1 226870544 226870557 Zfx_MA0146.2 9.289309141869364 + +chr1 226870566 226870579 Zfx_MA0146.2 10.461253089658168 + +chr1 226870676 226870689 Zfx_MA0146.2 8.374860136690813 - +chr1 226870915 226870928 Zfx_MA0146.2 7.583806216612110 + +chr1 226940022 226940035 Zfx_MA0146.2 7.598186136003702 + +chr1 227542047 227542060 Zfx_MA0146.2 7.639505856738151 - +chr1 227542514 227542527 Zfx_MA0146.2 9.002785396652104 + +chr1 227542578 227542591 Zfx_MA0146.2 10.597254658848634 - +chr1 227542632 227542645 Zfx_MA0146.2 10.650826793668513 - +chr1 227563545 227563558 Zfx_MA0146.2 7.406828241143646 + +chr1 227563755 227563768 Zfx_MA0146.2 9.210786464110388 + +chr1 227563891 227563904 Zfx_MA0146.2 10.149536228595704 + +chr1 227734948 227734961 Zfx_MA0146.2 9.864958093562755 + +chr1 227735220 227735233 Zfx_MA0146.2 8.449493589980349 + +chr1 227735226 227735239 Zfx_MA0146.2 8.015503245316484 - +chr1 227735391 227735404 Zfx_MA0146.2 7.653645504649770 + +chr1 227788100 227788113 Zfx_MA0146.2 9.613589151397829 + +chr1 228082348 228082361 Zfx_MA0146.2 9.075756779978427 + +chr1 228082428 228082441 Zfx_MA0146.2 9.061797911328505 + +chr1 228103244 228103257 Zfx_MA0146.2 7.380039073357327 + +chr1 228103313 228103326 Zfx_MA0146.2 9.837225940749029 - +chr1 228109439 228109452 Zfx_MA0146.2 10.564340143834716 + +chr1 228165501 228165514 Zfx_MA0146.2 7.771267232940327 - +chr1 228165952 228165965 Zfx_MA0146.2 11.871128552772419 + +chr1 228166236 228166249 Zfx_MA0146.2 10.308242186605774 + +chr1 228458352 228458365 Zfx_MA0146.2 9.554781939141041 + +chr1 228464359 228464372 Zfx_MA0146.2 9.554781939141041 - +chr1 228487756 228487769 Zfx_MA0146.2 8.415518285710188 - +chr1 228500727 228500740 Zfx_MA0146.2 8.568863960141583 - +chr1 228635353 228635366 Zfx_MA0146.2 7.837651353494089 + +chr1 229271045 229271058 Zfx_MA0146.2 11.082824320145065 + +chr1 229271083 229271096 Zfx_MA0146.2 9.593920816532247 + +chr1 229271375 229271388 Zfx_MA0146.2 10.348314165897671 - +chr1 229271428 229271441 Zfx_MA0146.2 11.008228570444597 + +chr1 229342119 229342132 Zfx_MA0146.2 9.935626504570315 + +chr1 229342134 229342147 Zfx_MA0146.2 9.784966258109677 + +chr1 229342947 229342960 Zfx_MA0146.2 8.750926946147274 - +chr1 229343102 229343115 Zfx_MA0146.2 9.079291066225871 + +chr1 229343196 229343209 Zfx_MA0146.2 10.474928635124481 - +chr1 229368455 229368468 Zfx_MA0146.2 9.446695637165462 - +chr1 229558098 229558111 Zfx_MA0146.2 7.513754883324471 - +chr1 229558249 229558262 Zfx_MA0146.2 8.795514570587798 + +chr1 229558255 229558268 Zfx_MA0146.2 9.185842619003896 - +chr1 229558395 229558408 Zfx_MA0146.2 9.707536571458657 - +chr1 229558993 229559006 Zfx_MA0146.2 7.874489962965069 - +chr1 229625643 229625656 Zfx_MA0146.2 9.036379603555964 - +chr1 229625677 229625690 Zfx_MA0146.2 9.710970784111563 - +chr1 229625795 229625808 Zfx_MA0146.2 9.369009141761666 - 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107934735 mix_a_MA0621.1 8.635306086796561 + +chr1 107935216 107935226 mix_a_MA0621.1 8.305449130093290 - From c1bfee4c0218534c81a44d9109f6fc39810bca64 Mon Sep 17 00:00:00 2001 From: renewiegandt Date: Sat, 19 Jan 2019 13:13:41 +0100 Subject: [PATCH 7/7] README: Fixed typos --- README.md | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/README.md b/README.md index 4cb7b67..0a112f3 100644 --- a/README.md +++ b/README.md @@ -31,7 +31,7 @@ conda activate masterenv **Important Notes:** 1. For conda the channel bioconda needs to be set as highest priority! This is required due to two different packages with the same name in different channels. For the pipeline the package jellyfish from the channel bioconda is needed and **NOT** the jellyfish package from the channel conda-forge! -2. The paramtere --create_known_tfbs_path and --tfbs_path need the absolute path. If a relative path is given it will not work due to nextflow changing the working directory. This will soon be updated. +2. The parameters --create_known_tfbs_path and --tfbs_path need an absolute path. If a relative path is given it will not work due to nextflow changing the working directory. This will soon be updated. ## Quick Start @@ -45,7 +45,7 @@ Go to the main directory and run following command: ``` nextflow run pipeline.nf --bigwig ./demo/buenrostro50k_chr1_fp.bw --bed ./demo/buenrostro50k_chr1_peaks.bed --genome_fasta ./demo/hg38/hg38_chr1.fa --motif_db ./demo/motif_database/jaspar_vertebrates.meme --out ./demo/buenrostro50k_chr1_out/ --create_known_tfbs_path [absolute path]/demo/known_tfbs/ --organism hg38 ``` -**Important Note:** In can happen that tfbsscan does not work due to an unknown bug. If this is the case you will see the error message shown in "Known Issues". If this occurs and "fimo" will also throw this error, try following command: +**Important Note:** It can happen that tfbsscan does not work due to an unknown bug. If this is the case you will see the error message shown in "Known Issues". If the error occurs first try to change the tfbsscan_method to fimo. If it persists try the following command: ``` nextflow run pipeline.nf --bigwig ./demo/buenrostro50k_chr1_fp.bw --bed ./demo/buenrostro50k_chr1_peaks.bed --genome_fasta ./demo/hg38/hg38_chr1.fa --motif_db ./demo/motif_database/jaspar_vertebrates.meme --out ./demo/buenrostro50k_chr1_out/ --tfbs_path [absolute path]/demo/known_tfbs_chr1_hg38/ --organism hg38 ``` @@ -66,7 +66,7 @@ Required arguments: --create_known_tfbs_path Path to directory where output from tfbsscan (known motifs) are stored. Path can be set as tfbs_path in next run. (Needs absolute path) or - --tfbs_path Path to directory with output from tfbsscan. If given tfbsscan will not be run. (Needs absolute path) + --tfbs_path Path to directory with output from tfbsscan. If given tfbsscan will be skipped. (Needs absolute path) ] Optional arguments: @@ -108,7 +108,7 @@ Optional arguments: --best_motif INT Get the best X motifs per cluster. (Default: 3) --gap_penalty INT Set penalty for gaps in GLAM2 (Default: 1000) Moitf clustering: - --cluster_motif Boolean If 1 pipeline clusters motifs. If its 0 it does not. (Defaul: 0) + --cluster_motif Boolean If 1 pipeline clusters motifs. If its 0 it does not. (Default: 0) --edge_weight INT Minimum weight of edges in motif-cluster-graph (Default: 5) --motif_similarity_thresh FLOAT Threshold for motif similarity score (Default: 0.00001)