Commits on Jan 23, 2019

1. Update parameter names in create_gtf.config

   

   renewiegandt committed Jan 23, 2019
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2. Update parameter names in footprint_extraction.config

   

   renewiegandt committed Jan 23, 2019
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3. Update parameter names in moitif_estimation.config

   

   renewiegandt committed Jan 23, 2019
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4. pipeline.nf: Added check for unknown parameters; update parameter nam… …

   …es; if compareBed.sh is not executable chmod +x is called

   

   renewiegandt committed Jan 23, 2019
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5. Removed debugging code

   

   renewiegandt committed Jan 23, 2019
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