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Estimation motifs #92

Merged
merged 25 commits into from
Mar 26, 2019
Merged

Estimation motifs #92

merged 25 commits into from
Mar 26, 2019

Commits on Jan 28, 2019

  1. get_motif_seq.R: Removed redundant code

    @renewiegandt
    renewiegandt committed Jan 28, 2019
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  2. Rename get_motif_seq.R

    @renewiegandt
    renewiegandt committed Jan 28, 2019
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  3. pipeline.nf: changed output dir of logs

    @renewiegandt
    renewiegandt committed Jan 28, 2019
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  4. compareBed.sh: rename stats to log

    @renewiegandt
    renewiegandt committed Jan 28, 2019
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Commits on Feb 4, 2019

  1. Added venn.R to 3.2_evaluation

    @renewiegandt
    renewiegandt committed Feb 4, 2019
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  2. Update uropa.config

    @renewiegandt
    renewiegandt committed Feb 4, 2019
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  3. Added uropa to the enviroment yaml

    @renewiegandt
    renewiegandt committed Feb 4, 2019
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  4. Added uropa and venn process; mergeing gtf files; added parameter for… 

    … second gtf file
    @renewiegandt
    renewiegandt committed Feb 4, 2019
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Commits on Feb 11, 2019

  1. Added yaml-file for meme-suite enviroment

    @renewiegandt
    renewiegandt committed Feb 11, 2019
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  2. Added meme_env parameter

    @renewiegandt
    renewiegandt committed Feb 11, 2019
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  3. Fixed channel for venn; added conda meme-env

    @renewiegandt
    renewiegandt committed Feb 11, 2019
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  4. added parameter gap penalty to 2.2config

    @renewiegandt
    renewiegandt committed Feb 11, 2019
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  5. merge_similar_clusters.R: bugfix

    @renewiegandt
    renewiegandt committed Feb 11, 2019
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  6. fixed label_cluster; minor changes

    @renewiegandt
    renewiegandt committed Feb 11, 2019
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Commits on Mar 4, 2019

  1. merge_similar_clusters: bugfix; improved cluster plot

    @renewiegandt
    renewiegandt committed Mar 4, 2019
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  2. pipeline: added uropa summary to output

    @renewiegandt
    renewiegandt committed Mar 4, 2019
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  3. merge_similar_clusters: fixed filenames

    @renewiegandt
    renewiegandt committed Mar 4, 2019
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  4. pipeline: Added seed for glam2

    @renewiegandt
    renewiegandt committed Mar 4, 2019
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Commits on Mar 20, 2019

  1. Added skript png_to_pdf

    @renewiegandt
    renewiegandt committed Mar 20, 2019
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  2. Better output directory names

    @renewiegandt
    renewiegandt committed Mar 20, 2019
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  3. Minor formating changes of output file

    @renewiegandt
    renewiegandt committed Mar 20, 2019
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Commits on Mar 26, 2019

  1. Update parameters in README

    @renewiegandt
    renewiegandt committed Mar 26, 2019
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  2. Added new parameters to config files

    @renewiegandt
    renewiegandt committed Mar 26, 2019
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  3. Minor changes

    @renewiegandt
    renewiegandt committed Mar 26, 2019
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  4. Minor changes

    @renewiegandt
    renewiegandt committed Mar 26, 2019
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