From b59210fe4b586a927d8a6e32e7e3dbcdeb992537 Mon Sep 17 00:00:00 2001 From: jenzopr Date: Tue, 30 Jun 2015 13:55:53 +0200 Subject: [PATCH] Fixed bug in family name switch parameter --- mirpipe.pl | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/mirpipe.pl b/mirpipe.pl index afe62b8..258ae05 100755 --- a/mirpipe.pl +++ b/mirpipe.pl @@ -85,7 +85,7 @@ $maxlen = '28' if (!defined $maxlen); $qval = '20' if (!defined $qval); $minlen = '18' if (!defined $minlen); -$nameswitch = 'Yes' if (defined !$nameswitch); +$nameswitch = 'Yes' if (!defined !$nameswitch); $abundance = '5' if (!defined $abundance); $tempfiles = 'No' if ($tempfiles eq ""); @@ -159,7 +159,7 @@ ############################################## print "Using as reads:\t$reads\nUsing as reference:\t$mirbase\nWill print logfile:\t$print_log\nWill include temporary files:\t$gzip_tempfiles\n"; -print "Additional parameters:\nmax mismatches:\t$mismatches\nmin counts:\t$mincount\nmin abundance:\t$abundance\n"; +print "Additional parameters:\nmax mismatches:\t$mismatches\nmin counts:\t$mincount\nmin abundance:\t$abundance\nfamily name switch:\t$nameswitch\n"; print "Working on: $ENV{'PWD'}\n"; ###############################################