useFlexmix.Rd

% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/algorithmSpecificFunctions.R
\name{useFlexmix}
\alias{useFlexmix}
\title{UseFlexmix}
\usage{
useFlexmix(expression, maxModality = 3, verbose = TRUE, parallel = FALSE,
  pathToClinicalData = "pathTo/clinicalData",
  pathToExpressionmatrix = "pathTo/expressionmatrix")
}
\arguments{
\item{expression}{(Simulated) Gene Expression data frame which genes shall
be classified as unimodal, bimodal or other}

\item{maxModality}{numerical. maximum modality for that models will be calculated}

\item{verbose}{logical. Whether to print progress messages}

\item{parallel}{logical. Whether to calculate the models in parallel}

\item{pathToClinicalData}{If real data is used the path
to the clinical data can be stored here}

\item{pathToExpressionmatrix}{If real data is used the path
to the gene expression matrix can be stored here}
}
\value{
flexmixOutput The formatted output of the best fitting models from flexmix
}
\description{
Use the FlexMix algorithm to create models and to find the best fitting
model to evaluate the classification (unimodal,bimodal or other) of genes.
}
\examples{
\dontrun{
params <- newParams(nGenes = list("1"=75,"2"=list("gauss"= 75,"gamma"= 75)))
simulation <- simulateExpression(params= params,verbose=FALSE)
expression <- simulation$expressionData
#with messages printed to console
flexmixOutput <- useFlexmix(expression = expression, maxModality = 2)
#without messages printed to console
flexmixOutput <- useFlexmix(expression = expression, maxModality = 2, verbose = FALSE)
}
}