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.Rbuildignore -
.gitignore -
DESCRIPTION -
LICENSE -
NAMESPACE -
R/TCGAFunctions.R -
R/algorithmSpecificFunctions.R -
R/evaluate.R -
R/filter.R -
R/genesXY.R -
R/params.R -
R/plotting.R -
R/simulation.R -
README.md -
data-raw/XYChromosomeGenes.R -
data-raw/gencode.v28.annotation.gtf.gz -
data/geneNamesX.rda -
data/geneNamesY.rda -
man/DipTestOverP.Rd -
man/Params.Rd -
man/SilvermanOverP.Rd -
man/calcPValues.Rd -
man/cleanOutput.Rd -
man/compareScenarios.Rd -
man/createValidationData.Rd -
man/evaluateAlgorithmOutput.Rd -
man/filter0sumGenes.Rd -
man/filterForFoldChange.Rd -
man/filterForKnownInCancer.Rd -
man/filterForMean.Rd -
man/filterForXChromosomeGenes.Rd -
man/filterForYChromosomeGenes.Rd -
man/filterMultimodalGenes.Rd -
man/filterRarelyExpressedGenes.Rd -
man/geneNamesX.Rd -
man/geneNamesY.Rd -
man/getClassification.Rd -
man/getClassifications.Rd -
man/getFilteredData.Rd -
man/getParam.Rd -
man/getParams.Rd -
man/getStatistic.Rd -
man/getStatistics.Rd -
man/isApproxSame.Rd -
man/isValidUnifiedOutputDataFormat.Rd -
man/mclustClassification.Rd -
man/newParams.Rd -
man/plotClassifications.Rd -
man/plotExpression.Rd -
man/plotOutput.Rd -
man/plotStatistics.Rd -
man/plotSurvivalCurves.Rd -
man/plot_mix_comps.Rd -
man/processOneCancerGroup.Rd -
man/rmse.Rd -
man/setParam.Rd -
man/setParams.Rd -
man/showPP.Rd -
man/simulateExpression.Rd -
man/toCancerDataGroups.Rd -
man/updateGeneNames.Rd -
man/useDiptest.Rd -
man/useFlexmix.Rd -
man/useHdbscan.Rd -
man/useMclust.Rd -
man/useSilvermantest.Rd -
multimodalR.Rproj -
vignettes/PlottingExample.png -
vignettes/Using-multimodalR-on-real-data.Rmd -
vignettes/WorkflowTCGAData.png -
vignettes/Workflow_multimodalR.png -
vignettes/Workflow_realData.png -
vignettes/getClassifications.png -
vignettes/getStatistics.png -
vignettes/multimodalR.Rmd -
vignettes/plotExpression.png
