From 70b400592459697cafa18a3f369fbde70535caeb Mon Sep 17 00:00:00 2001
From: Schultheis <hschult@kerckhoff.mpg.de>
Date: Wed, 4 Jul 2018 15:14:54 +0200
Subject: [PATCH] updated reverse dependency check

---
 revdep/README.md   |  54 +++++++++++++++++++++++----------------------
 revdep/checks.rds  | Bin 911 -> 956 bytes
 revdep/problems.md |  54 +++++++++++++++++++++++----------------------
 3 files changed, 56 insertions(+), 52 deletions(-)

diff --git a/revdep/README.md b/revdep/README.md
index 3b38cae..d73a3a5 100644
--- a/revdep/README.md
+++ b/revdep/README.md
@@ -4,48 +4,50 @@
 
 |setting  |value                        |
 |:--------|:----------------------------|
-|version  |R version 3.5.0 (2018-04-23) |
+|version  |R version 3.5.1 (2018-07-02) |
 |system   |x86_64, mingw32              |
 |ui       |RStudio (1.2.747)            |
 |language |(EN)                         |
 |collate  |German_Germany.1252          |
 |tz       |Europe/Berlin                |
-|date     |2018-06-29                   |
+|date     |2018-07-04                   |
 
 ## Packages
 
 |package         |*  |version |date       |source                              |
 |:---------------|:--|:-------|:----------|:-----------------------------------|
-|circlize        |   |0.4.4   |2018-06-10 |CRAN (R 3.5.0)                      |
-|colourpicker    |   |1.0     |2017-09-27 |CRAN (R 3.5.0)                      |
+|circlize        |   |0.4.4   |2018-06-10 |CRAN (R 3.5.1)                      |
+|colourpicker    |   |1.0     |2017-09-27 |CRAN (R 3.5.1)                      |
 |ComplexHeatmap  |   |1.18.1  |2018-06-19 |Bioconductor (R 3.5.0)              |
-|data.table      |   |1.11.4  |2018-05-27 |CRAN (R 3.5.0)                      |
+|data.table      |   |1.11.4  |2018-05-27 |CRAN (R 3.5.1)                      |
 |DESeq2          |   |1.20.0  |2018-05-01 |Bioconductor                        |
-|DT              |   |0.4     |2018-01-30 |CRAN (R 3.5.0)                      |
-|factoextra      |   |1.0.5   |2017-08-22 |CRAN (R 3.5.0)                      |
-|FactoMineR      |   |1.41    |2018-05-04 |CRAN (R 3.5.0)                      |
-|ggplot2         |   |2.2.1   |2016-12-30 |CRAN (R 3.5.0)                      |
-|ggrepel         |   |0.8.0   |2018-05-09 |CRAN (R 3.5.0)                      |
-|gplots          |   |3.0.1   |2016-03-30 |CRAN (R 3.5.0)                      |
-|heatmaply       |   |0.15.0  |2018-06-23 |CRAN (R 3.5.0)                      |
-|log4r           |   |0.2     |2014-09-29 |CRAN (R 3.5.0)                      |
-|openssl         |   |1.0.1   |2018-03-03 |CRAN (R 3.5.0)                      |
-|plotly          |   |4.7.1   |2017-07-29 |CRAN (R 3.5.0)                      |
-|plyr            |   |1.8.4   |2016-06-08 |CRAN (R 3.5.0)                      |
-|R6              |   |2.2.2   |2017-06-17 |CRAN (R 3.5.0)                      |
+|DT              |   |0.4     |2018-01-30 |CRAN (R 3.5.1)                      |
+|factoextra      |   |1.0.5   |2017-08-22 |CRAN (R 3.5.1)                      |
+|FactoMineR      |   |1.41    |2018-05-04 |CRAN (R 3.5.1)                      |
+|ggplot2         |   |2.2.1   |2016-12-30 |CRAN (R 3.5.1)                      |
+|ggrepel         |   |0.8.0   |2018-05-09 |CRAN (R 3.5.1)                      |
+|gplots          |   |3.0.1   |2016-03-30 |CRAN (R 3.5.1)                      |
+|heatmaply       |   |0.15.0  |2018-06-23 |CRAN (R 3.5.1)                      |
+|knitr           |   |1.20    |2018-02-20 |CRAN (R 3.5.1)                      |
+|log4r           |   |0.2     |2014-09-29 |CRAN (R 3.5.1)                      |
+|openssl         |   |1.0.1   |2018-03-03 |CRAN (R 3.5.1)                      |
+|plotly          |   |4.7.1   |2017-07-29 |CRAN (R 3.5.1)                      |
+|plyr            |   |1.8.4   |2016-06-08 |CRAN (R 3.5.1)                      |
+|R6              |   |2.2.2   |2017-06-17 |CRAN (R 3.5.1)                      |
 |RColorBrewer    |   |1.1-2   |2014-12-07 |CRAN (R 3.5.0)                      |
-|reshape         |   |0.8.7   |2017-08-06 |CRAN (R 3.5.0)                      |
-|rintrojs        |   |0.2.0   |2017-07-04 |CRAN (R 3.5.0)                      |
+|reshape         |   |0.8.7   |2017-08-06 |CRAN (R 3.5.1)                      |
+|rintrojs        |   |0.2.0   |2017-07-04 |CRAN (R 3.5.1)                      |
 |rje             |   |1.9     |2014-08-06 |CRAN (R 3.5.0)                      |
 |rjson           |   |0.2.20  |2018-06-08 |CRAN (R 3.5.0)                      |
 |RJSONIO         |   |1.3-0   |2014-07-28 |CRAN (R 3.5.0)                      |
-|scales          |   |0.5.0   |2017-08-24 |CRAN (R 3.5.0)                      |
-|shiny           |   |1.1.0   |2018-05-17 |CRAN (R 3.5.0)                      |
-|shinycssloaders |   |0.2.0   |2017-05-12 |CRAN (R 3.5.0)                      |
-|shinydashboard  |   |0.7.0   |2018-03-21 |CRAN (R 3.5.0)                      |
-|shinyjs         |   |1.0     |2018-01-08 |CRAN (R 3.5.0)                      |
-|viridis         |   |0.5.1   |2018-03-29 |CRAN (R 3.5.0)                      |
-|wilson          |   |2.0.0   |2018-06-29 |local (HendrikSchultheis/wilson@NA) |
+|rmarkdown       |   |1.10    |2018-06-11 |CRAN (R 3.5.1)                      |
+|scales          |   |0.5.0   |2017-08-24 |CRAN (R 3.5.1)                      |
+|shiny           |   |1.1.0   |2018-05-17 |CRAN (R 3.5.1)                      |
+|shinycssloaders |   |0.2.0   |2017-05-12 |CRAN (R 3.5.1)                      |
+|shinydashboard  |   |0.7.0   |2018-03-21 |CRAN (R 3.5.1)                      |
+|shinyjs         |   |1.0     |2018-01-08 |CRAN (R 3.5.1)                      |
+|viridis         |   |0.5.1   |2018-03-29 |CRAN (R 3.5.1)                      |
+|wilson          |*  |2.0.0   |2018-07-04 |local (HendrikSchultheis/wilson@NA) |
 
 # Check results
 
diff --git a/revdep/checks.rds b/revdep/checks.rds
index dc78959945e422e14d40f987fe96f00a560a0b90..208d158503dc1aaf270823e9bd018582eae313d4 100644
GIT binary patch
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diff --git a/revdep/problems.md b/revdep/problems.md
index 368348c..8f790c3 100644
--- a/revdep/problems.md
+++ b/revdep/problems.md
@@ -4,48 +4,50 @@
 
 |setting  |value                        |
 |:--------|:----------------------------|
-|version  |R version 3.5.0 (2018-04-23) |
+|version  |R version 3.5.1 (2018-07-02) |
 |system   |x86_64, mingw32              |
 |ui       |RStudio (1.2.747)            |
 |language |(EN)                         |
 |collate  |German_Germany.1252          |
 |tz       |Europe/Berlin                |
-|date     |2018-06-29                   |
+|date     |2018-07-04                   |
 
 ## Packages
 
 |package         |*  |version |date       |source                              |
 |:---------------|:--|:-------|:----------|:-----------------------------------|
-|circlize        |   |0.4.4   |2018-06-10 |CRAN (R 3.5.0)                      |
-|colourpicker    |   |1.0     |2017-09-27 |CRAN (R 3.5.0)                      |
+|circlize        |   |0.4.4   |2018-06-10 |CRAN (R 3.5.1)                      |
+|colourpicker    |   |1.0     |2017-09-27 |CRAN (R 3.5.1)                      |
 |ComplexHeatmap  |   |1.18.1  |2018-06-19 |Bioconductor (R 3.5.0)              |
-|data.table      |   |1.11.4  |2018-05-27 |CRAN (R 3.5.0)                      |
+|data.table      |   |1.11.4  |2018-05-27 |CRAN (R 3.5.1)                      |
 |DESeq2          |   |1.20.0  |2018-05-01 |Bioconductor                        |
-|DT              |   |0.4     |2018-01-30 |CRAN (R 3.5.0)                      |
-|factoextra      |   |1.0.5   |2017-08-22 |CRAN (R 3.5.0)                      |
-|FactoMineR      |   |1.41    |2018-05-04 |CRAN (R 3.5.0)                      |
-|ggplot2         |   |2.2.1   |2016-12-30 |CRAN (R 3.5.0)                      |
-|ggrepel         |   |0.8.0   |2018-05-09 |CRAN (R 3.5.0)                      |
-|gplots          |   |3.0.1   |2016-03-30 |CRAN (R 3.5.0)                      |
-|heatmaply       |   |0.15.0  |2018-06-23 |CRAN (R 3.5.0)                      |
-|log4r           |   |0.2     |2014-09-29 |CRAN (R 3.5.0)                      |
-|openssl         |   |1.0.1   |2018-03-03 |CRAN (R 3.5.0)                      |
-|plotly          |   |4.7.1   |2017-07-29 |CRAN (R 3.5.0)                      |
-|plyr            |   |1.8.4   |2016-06-08 |CRAN (R 3.5.0)                      |
-|R6              |   |2.2.2   |2017-06-17 |CRAN (R 3.5.0)                      |
+|DT              |   |0.4     |2018-01-30 |CRAN (R 3.5.1)                      |
+|factoextra      |   |1.0.5   |2017-08-22 |CRAN (R 3.5.1)                      |
+|FactoMineR      |   |1.41    |2018-05-04 |CRAN (R 3.5.1)                      |
+|ggplot2         |   |2.2.1   |2016-12-30 |CRAN (R 3.5.1)                      |
+|ggrepel         |   |0.8.0   |2018-05-09 |CRAN (R 3.5.1)                      |
+|gplots          |   |3.0.1   |2016-03-30 |CRAN (R 3.5.1)                      |
+|heatmaply       |   |0.15.0  |2018-06-23 |CRAN (R 3.5.1)                      |
+|knitr           |   |1.20    |2018-02-20 |CRAN (R 3.5.1)                      |
+|log4r           |   |0.2     |2014-09-29 |CRAN (R 3.5.1)                      |
+|openssl         |   |1.0.1   |2018-03-03 |CRAN (R 3.5.1)                      |
+|plotly          |   |4.7.1   |2017-07-29 |CRAN (R 3.5.1)                      |
+|plyr            |   |1.8.4   |2016-06-08 |CRAN (R 3.5.1)                      |
+|R6              |   |2.2.2   |2017-06-17 |CRAN (R 3.5.1)                      |
 |RColorBrewer    |   |1.1-2   |2014-12-07 |CRAN (R 3.5.0)                      |
-|reshape         |   |0.8.7   |2017-08-06 |CRAN (R 3.5.0)                      |
-|rintrojs        |   |0.2.0   |2017-07-04 |CRAN (R 3.5.0)                      |
+|reshape         |   |0.8.7   |2017-08-06 |CRAN (R 3.5.1)                      |
+|rintrojs        |   |0.2.0   |2017-07-04 |CRAN (R 3.5.1)                      |
 |rje             |   |1.9     |2014-08-06 |CRAN (R 3.5.0)                      |
 |rjson           |   |0.2.20  |2018-06-08 |CRAN (R 3.5.0)                      |
 |RJSONIO         |   |1.3-0   |2014-07-28 |CRAN (R 3.5.0)                      |
-|scales          |   |0.5.0   |2017-08-24 |CRAN (R 3.5.0)                      |
-|shiny           |   |1.1.0   |2018-05-17 |CRAN (R 3.5.0)                      |
-|shinycssloaders |   |0.2.0   |2017-05-12 |CRAN (R 3.5.0)                      |
-|shinydashboard  |   |0.7.0   |2018-03-21 |CRAN (R 3.5.0)                      |
-|shinyjs         |   |1.0     |2018-01-08 |CRAN (R 3.5.0)                      |
-|viridis         |   |0.5.1   |2018-03-29 |CRAN (R 3.5.0)                      |
-|wilson          |   |2.0.0   |2018-06-29 |local (HendrikSchultheis/wilson@NA) |
+|rmarkdown       |   |1.10    |2018-06-11 |CRAN (R 3.5.1)                      |
+|scales          |   |0.5.0   |2017-08-24 |CRAN (R 3.5.1)                      |
+|shiny           |   |1.1.0   |2018-05-17 |CRAN (R 3.5.1)                      |
+|shinycssloaders |   |0.2.0   |2017-05-12 |CRAN (R 3.5.1)                      |
+|shinydashboard  |   |0.7.0   |2018-03-21 |CRAN (R 3.5.1)                      |
+|shinyjs         |   |1.0     |2018-01-08 |CRAN (R 3.5.1)                      |
+|viridis         |   |0.5.1   |2018-03-29 |CRAN (R 3.5.1)                      |
+|wilson          |*  |2.0.0   |2018-07-04 |local (HendrikSchultheis/wilson@NA) |
 
 # Check results