diff --git a/inst/extdata/tobias_config.json b/inst/extdata/tobias_config.json index f8e050a..9a2c5dc 100644 --- a/inst/extdata/tobias_config.json +++ b/inst/extdata/tobias_config.json @@ -1,12 +1,5 @@ { "meta": [ - { - "col_name": "id", - "level": "feature", - "type": "unique_id", - "label": "id", - "sublabel": "" - }, { "col_name": "TFBS_chr", "level": "feature", @@ -140,146 +133,6 @@ "label": "name", "sublabel": "gene" }, - { - "col_name": "2C_score", - "level": "condition", - "type": "score", - "label": "2C", - "sublabel": "score" - }, - { - "col_name": "8C_score", - "level": "condition", - "type": "score", - "label": "8C", - "sublabel": "score" - }, - { - "col_name": "ICM_score", - "level": "condition", - "type": "score", - "label": "ICM", - "sublabel": "score" - }, - { - "col_name": "naive_hESC_score", - "level": "condition", - "type": "score", - "label": "naive hESC", - "sublabel": "score" - }, - { - "col_name": "hESC_score", - "level": "condition", - "type": "score", - "label": "hESC", - "sublabel": "score" - }, - { - "col_name": "2C_bound", - "level": "condition", - "type": "score", - "label": "2C", - "sublabel": "bound" - }, - { - "col_name": "8C_bound", - "level": "condition", - "type": "score", - "label": "8C", - "sublabel": "bound" - }, - { - "col_name": "ICM_bound", - "level": "condition", - "type": "score", - "label": "ICM", - "sublabel": "bound" - }, - { - "col_name": "naive_hESC_bound", - "level": "condition", - "type": "score", - "label": "naive hESC", - "sublabel": "bound" - }, - { - "col_name": "hESC_bound", - "level": "condition", - "type": "score", - "label": "hESC", - "sublabel": "bound" - }, - { - "col_name": "2C_8C_log2fc", - "level": "contrast", - "type": "ratio", - "label": "2C|8C", - "sublabel": "log2fc" - }, - { - "col_name": "2C_ICM_log2fc", - "level": "contrast", - "type": "ratio", - "label": "2C|ICM", - "sublabel": "log2fc" - }, - { - "col_name": "2C_naive_hESC_log2fc", - "level": "contrast", - "type": "ratio", - "label": "2C|naive hESC", - "sublabel": "log2fc" - }, - { - "col_name": "2C_hESC_log2fc", - "level": "contrast", - "type": "ratio", - "label": "2C|hESC", - "sublabel": "log2fc" - }, - { - "col_name": "8C_ICM_log2fc", - "level": "contrast", - "type": "ratio", - "label": "8C|ICM", - "sublabel": "log2fc" - }, - { - "col_name": "8C_naive_hESC_log2fc", - "level": "contrast", - "type": "ratio", - "label": "8C|naive hESC", - "sublabel": "log2fc" - }, - { - "col_name": "8C_hESC_log2fc", - "level": "contrast", - "type": "ratio", - "label": "8C|hESC", - "sublabel": "log2fc" - }, - { - "col_name": "ICM_naive_hESC_log2fc", - "level": "contrast", - "type": "ratio", - "label": "ICM|naive hESC", - "sublabel": "log2fc" - }, - { - "col_name": "ICM_hESC_log2fc", - "level": "contrast", - "type": "ratio", - "label": "ICM|hESC", - "sublabel": "log2fc" - }, - { - "col_name": "naive_hESC_hESC_log2fc", - "level": "contrast", - "type": "ratio", - "label": "naive hESC|hESC", - "sublabel": "log2fc" - }, // overview columns { "col_name": "TF_name", @@ -301,216 +154,6 @@ "type": "category", "label": "total TFBS", "sublabel": "" - }, - { - "col_name": "2C_mean_score", - "level": "condition", - "type": "score", - "label": "2C", - "sublabel": "mean" - }, - { - "col_name": "2C_bound", - "level": "condition", - "type": "score", - "label": "2C", - "sublabel": "bound" - }, - { - "col_name": "8C_mean_score", - "level": "condition", - "type": "score", - "label": "8C", - "sublabel": "mean" - }, - { - "col_name": "8C_bound", - "level": "condition", - "type": "score", - "label": "8C", - "sublabel": "bound" - }, - { - "col_name": "ICM_mean_score", - "level": "condition", - "type": "score", - "label": "ICM", - "sublabel": "mean" - }, - { - "col_name": "ICM_bound", - "level": "condition", - "type": "score", - "label": "ICM", - "sublabel": "bound" - }, - { - "col_name": "naive_hESC_mean_score", - "level": "condition", - "type": "score", - "label": "naive_hESC", - "sublabel": "mean" - }, - { - "col_name": "naive_hESC_bound", - "level": "condition", - "type": "score", - "label": "naive_hESC", - "sublabel": "bound" - }, - { - "col_name": "hESC_mean_score", - "level": "condition", - "type": "score", - "label": "hESC", - "sublabel": "mean" - }, - { - "col_name": "hESC_bound", - "level": "condition", - "type": "score", - "label": "hESC", - "sublabel": "bound" - }, - { - "col_name": "2C_8C_change", - "level": "contrast", - "type": "ratio", - "label": "2C|8C", - "sublabel": "change" - }, - { - "col_name": "2C_8C_pvalue", - "level": "contrast", - "type": "probability", - "label": "2C|8C", - "sublabel": "p-value" - }, - { - "col_name": "2C_ICM_change", - "level": "contrast", - "type": "ratio", - "label": "2C|ICM", - "sublabel": "change" - }, - { - "col_name": "2C_ICM_pvalue", - "level": "contrast", - "type": "probability", - "label": "2C|ICM", - "sublabel": "p-value" - }, - { - "col_name": "2C_naive_hESC_change", - "level": "contrast", - "type": "ratio", - "label": "2C|naive hESC", - "sublabel": "change" - }, - { - "col_name": "2C_naive_hESC_pvalue", - "level": "contrast", - "type": "probability", - "label": "2C|naive hESC", - "sublabel": "p-value" - }, - { - "col_name": "2C_hESC_change", - "level": "contrast", - "type": "ratio", - "label": "2C|hESC", - "sublabel": "change" - }, - { - "col_name": "2C_hESC_pvalue", - "level": "contrast", - "type": "probability", - "label": "2C|hESC", - "sublabel": "p-value" - }, - { - "col_name": "8C_ICM_change", - "level": "contrast", - "type": "ratio", - "label": "8C|ICM", - "sublabel": "change" - }, - { - "col_name": "8C_ICM_pvalue", - "level": "contrast", - "type": "probability", - "label": "8C|ICM", - "sublabel": "p-value" - }, - { - "col_name": "8C_naive_hESC_change", - "level": "contrast", - "type": "ratio", - "label": "8C|naive hESC", - "sublabel": "change" - }, - { - "col_name": "8C_naive_hESC_pvalue", - "level": "contrast", - "type": "probability", - "label": "8C|naive hESC", - "sublabel": "p-value" - }, - { - "col_name": "8C_hESC_change", - "level": "contrast", - "type": "ratio", - "label": "8C|hESC", - "sublabel": "change" - }, - { - "col_name": "8C_hESC_pvalue", - "level": "contrast", - "type": "probability", - "label": "8C|hESC", - "sublabel": "p-value" - }, - { - "col_name": "ICM_naive_hESC_change", - "level": "contrast", - "type": "ratio", - "label": "ICM|naive hESC", - "sublabel": "change" - }, - { - "col_name": "ICM_naive_hESC_pvalue", - "level": "contrast", - "type": "probability", - "label": "ICM|naive hESC", - "sublabel": "p-value" - }, - { - "col_name": "ICM_hESC_change", - "level": "contrast", - "type": "ratio", - "label": "ICM|hESC", - "sublabel": "change" - }, - { - "col_name": "ICM_hESC_pvalue", - "level": "contrast", - "type": "probability", - "label": "ICM|hESC", - "sublabel": "p-value" - }, - { - "col_name": "naive_hESC_hESC_change", - "level": "contrast", - "type": "ratio", - "label": "naive hESC|hESC", - "sublabel": "p-value" - }, - { - "col_name": "naive_hESC_hESC_pvalue", - "level": "contrast", - "type": "probability", - "label": "naive hESC|hESC", - "sublabel": "change" } ] } \ No newline at end of file