diff --git a/DESCRIPTION b/DESCRIPTION
index 9f8977f..89f58fc 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -46,7 +46,7 @@ Imports: shiny,
     openssl,
     methods,
     R6
-RoxygenNote: 6.0.1
+RoxygenNote: 6.1.0
 biocViews: 
 Suggests: knitr,
     rmarkdown,
diff --git a/man/colorPicker.Rd b/man/colorPicker.Rd
index 5581d4d..1f4aa8f 100644
--- a/man/colorPicker.Rd
+++ b/man/colorPicker.Rd
@@ -4,8 +4,8 @@
 \alias{colorPicker}
 \title{colorPicker module server logic}
 \usage{
-colorPicker(input, output, session, num.colors = 256, distribution = "all",
-  winsorize = NULL, selected = NULL)
+colorPicker(input, output, session, num.colors = 256,
+  distribution = "all", winsorize = NULL, selected = NULL)
 }
 \arguments{
 \item{input}{Shiny's input object}
diff --git a/man/create_geneview.Rd b/man/create_geneview.Rd
index c4f7932..918371c 100644
--- a/man/create_geneview.Rd
+++ b/man/create_geneview.Rd
@@ -4,10 +4,11 @@
 \alias{create_geneview}
 \title{Method for geneView creation}
 \usage{
-create_geneview(data, grouping, plot.type = "line", facet.target = "gene",
-  facet.cols = 2, colors = NULL, ylabel = NULL, ylimits = NULL,
-  gene.label = NULL, plot.method = "static", width = "auto",
-  height = "auto", ppi = 72, scale = 1)
+create_geneview(data, grouping, plot.type = "line",
+  facet.target = "gene", facet.cols = 2, colors = NULL,
+  ylabel = NULL, ylimits = NULL, gene.label = NULL,
+  plot.method = "static", width = "auto", height = "auto",
+  ppi = 72, scale = 1)
 }
 \arguments{
 \item{data}{data.table containing plot data}
diff --git a/man/create_heatmap.Rd b/man/create_heatmap.Rd
index 4686f1f..fe2364f 100644
--- a/man/create_heatmap.Rd
+++ b/man/create_heatmap.Rd
@@ -6,10 +6,10 @@
 \usage{
 create_heatmap(data, unitlabel = "auto", row.label = TRUE,
   row.custom.label = NULL, column.label = TRUE,
-  column.custom.label = NULL, clustering = "none", clustdist = "auto",
-  clustmethod = "auto", colors = NULL, winsorize.colors = NULL,
-  plot.method = "static", width = "auto", height = "auto", ppi = 72,
-  scale = 1)
+  column.custom.label = NULL, clustering = "none",
+  clustdist = "auto", clustmethod = "auto", colors = NULL,
+  winsorize.colors = NULL, plot.method = "static", width = "auto",
+  height = "auto", ppi = 72, scale = 1)
 }
 \arguments{
 \item{data}{data.table containing plot data. First column contains row labels.}
diff --git a/man/create_pca.Rd b/man/create_pca.Rd
index 4426b10..0054b95 100644
--- a/man/create_pca.Rd
+++ b/man/create_pca.Rd
@@ -4,11 +4,12 @@
 \alias{create_pca}
 \title{Method for pca creation.}
 \usage{
-create_pca(data, color.group = NULL, color.title = NULL, palette = NULL,
-  shape.group = NULL, shape.title = NULL, shapes = c(15:25),
-  dimension.a = 1, dimension.b = 2, dimensions = 6, on.columns = TRUE,
-  labels = FALSE, custom.labels = NULL, pointsize = 2, labelsize = 3,
-  width = 28, height = 28, ppi = 72, scale = 1)
+create_pca(data, color.group = NULL, color.title = NULL,
+  palette = NULL, shape.group = NULL, shape.title = NULL,
+  shapes = c(15:25), dimension.a = 1, dimension.b = 2,
+  dimensions = 6, on.columns = TRUE, labels = FALSE,
+  custom.labels = NULL, pointsize = 2, labelsize = 3, width = 28,
+  height = 28, ppi = 72, scale = 1)
 }
 \arguments{
 \item{data}{data.table from which the plot is created (First column will be handled as rownames if not numeric).}
diff --git a/man/create_scatterplot.Rd b/man/create_scatterplot.Rd
index d219acd..fe4d0f4 100644
--- a/man/create_scatterplot.Rd
+++ b/man/create_scatterplot.Rd
@@ -10,8 +10,8 @@ create_scatterplot(data, data.labels = NULL, data.hovertext = NULL,
   line = TRUE, categorized = FALSE, highlight.data = NULL,
   highlight.labels = NULL, highlight.hovertext = NULL,
   highlight.color = "#FF0000", xlim = NULL, ylim = NULL,
-  colorbar.limits = NULL, width = "auto", height = "auto", ppi = 72,
-  plot.method = "static", scale = 1)
+  colorbar.limits = NULL, width = "auto", height = "auto",
+  ppi = 72, plot.method = "static", scale = 1)
 }
 \arguments{
 \item{data}{data.table containing plot data
diff --git a/man/download.Rd b/man/download.Rd
index ba92f84..a74245e 100644
--- a/man/download.Rd
+++ b/man/download.Rd
@@ -6,8 +6,8 @@
 Creates a zip container containing plot in png, pdf and user input in json format.
 Use inside \code{\link[shiny]{downloadHandler}} content function.}
 \usage{
-download(file, filename, plot, width, height, ppi = 72, save_plot = TRUE,
-  ui = NULL)
+download(file, filename, plot, width, height, ppi = 72,
+  save_plot = TRUE, ui = NULL)
 }
 \arguments{
 \item{file}{See \code{\link[shiny]{downloadHandler}} content parameter.}
diff --git a/man/global_cor_heatmap.Rd b/man/global_cor_heatmap.Rd
index cf0d13e..beb7d85 100644
--- a/man/global_cor_heatmap.Rd
+++ b/man/global_cor_heatmap.Rd
@@ -4,8 +4,9 @@
 \alias{global_cor_heatmap}
 \title{global correlation heatmap module server logic}
 \usage{
-global_cor_heatmap(input, output, session, clarion, plot.method = "static",
-  width = "auto", height = "auto", ppi = 72, scale = 1)
+global_cor_heatmap(input, output, session, clarion,
+  plot.method = "static", width = "auto", height = "auto",
+  ppi = 72, scale = 1)
 }
 \arguments{
 \item{input}{Shiny's input object}
diff --git a/man/log_message.Rd b/man/log_message.Rd
index eea02ae..77d2146 100644
--- a/man/log_message.Rd
+++ b/man/log_message.Rd
@@ -4,8 +4,8 @@
 \alias{log_message}
 \title{logger message convenience function}
 \usage{
-log_message(message, level = c("DEBUG", "INFO", "WARN", "ERROR", "FATAL"),
-  token = NULL)
+log_message(message, level = c("DEBUG", "INFO", "WARN", "ERROR",
+  "FATAL"), token = NULL)
 }
 \arguments{
 \item{message}{String of message to be written in log. See \code{\link[log4r]{levellog}}.}
diff --git a/man/orNumeric.Rd b/man/orNumeric.Rd
index ee9a85e..644eff4 100644
--- a/man/orNumeric.Rd
+++ b/man/orNumeric.Rd
@@ -5,8 +5,9 @@
 \title{orNumeric module server logic}
 \usage{
 orNumeric(input, output, session, choices, value, label = "Column",
-  step = 100, stepsize = NULL, min. = shiny::reactive(min(choices_r(),
-  na.rm = TRUE)), max. = shiny::reactive(max(choices_r(), na.rm = TRUE)),
+  step = 100, stepsize = NULL,
+  min. = shiny::reactive(min(choices_r(), na.rm = TRUE)),
+  max. = shiny::reactive(max(choices_r(), na.rm = TRUE)),
   label.slider = NULL, zoomable = TRUE, reset = NULL)
 }
 \arguments{
diff --git a/man/orTextual.Rd b/man/orTextual.Rd
index 68f18ff..e3a5f6f 100644
--- a/man/orTextual.Rd
+++ b/man/orTextual.Rd
@@ -5,8 +5,8 @@
 \title{orTextual module server logic}
 \usage{
 orTextual(input, output, session, choices, selected = NULL,
-  label = "Column", delimiter = NULL, multiple = TRUE, contains = FALSE,
-  reset = NULL)
+  label = "Column", delimiter = NULL, multiple = TRUE,
+  contains = FALSE, reset = NULL)
 }
 \arguments{
 \item{input}{Shiny's input object.}
diff --git a/man/parse_MaxQuant.Rd b/man/parse_MaxQuant.Rd
index d17e81a..8414d4f 100644
--- a/man/parse_MaxQuant.Rd
+++ b/man/parse_MaxQuant.Rd
@@ -6,8 +6,8 @@
 by creating a headline of metadata for each column}
 \usage{
 parse_MaxQuant(proteinGroups_in, summary_in, outfile, outfile_reduced,
-  config = system.file("extdata", "parser_MaxQuant_config.json", package =
-  "wilson"), delimiter = ";", format = NULL, version = NULL,
+  config = system.file("extdata", "parser_MaxQuant_config.json", package
+  = "wilson"), delimiter = ";", format = NULL, version = NULL,
   experiment_id = NULL)
 }
 \arguments{
diff --git a/man/pca.Rd b/man/pca.Rd
index 4d7571a..92c35e5 100644
--- a/man/pca.Rd
+++ b/man/pca.Rd
@@ -4,8 +4,8 @@
 \alias{pca}
 \title{pca module server logic}
 \usage{
-pca(input, output, session, clarion, width = 28, height = 28, ppi = 72,
-  scale = 1)
+pca(input, output, session, clarion, width = 28, height = 28,
+  ppi = 72, scale = 1)
 }
 \arguments{
 \item{input}{Shiny's input object}
diff --git a/man/scatterPlot.Rd b/man/scatterPlot.Rd
index 7adce15..0a1ed87 100644
--- a/man/scatterPlot.Rd
+++ b/man/scatterPlot.Rd
@@ -5,8 +5,8 @@
 \title{scatterPlot module server logic}
 \usage{
 scatterPlot(input, output, session, clarion, marker.output = NULL,
-  plot.method = "static", width = "auto", height = "auto", ppi = 72,
-  scale = 1)
+  plot.method = "static", width = "auto", height = "auto",
+  ppi = 72, scale = 1)
 }
 \arguments{
 \item{input}{Shiny's input object}
diff --git a/man/searchData.Rd b/man/searchData.Rd
index 79b581e..e655116 100644
--- a/man/searchData.Rd
+++ b/man/searchData.Rd
@@ -4,8 +4,8 @@
 \alias{searchData}
 \title{Function to search data for selection}
 \usage{
-searchData(input, choices, options = c("=", "<", ">"), min. = min(choices,
-  na.rm = TRUE), max. = max(choices, na.rm = TRUE))
+searchData(input, choices, options = c("=", "<", ">"),
+  min. = min(choices, na.rm = TRUE), max. = max(choices, na.rm = TRUE))
 }
 \arguments{
 \item{input}{Vector length one (single) or two (ranged) containing numeric values for selection.}