diff --git a/perl-wrapper.be0 b/perl-wrapper.be0 index dc9434e91..6fd115768 100755 --- a/perl-wrapper.be0 +++ b/perl-wrapper.be0 @@ -58,7 +58,7 @@ SRCURL[0]="" #} mee_build() { - echo -e '#! /bin/bash\nprun perl $(basename "$0") "$@"' >wrapper + echo -e '#! /bin/bash\nprun perl-5.12.1-0 $(basename "$0") "$@"' >wrapper chmod +x wrapper } @@ -66,50 +66,44 @@ mee_install() { mkdir -p "$D$BINDIR" # list generated by - # for cmd in $(cd /pkg/perl-5.28.1-0/bin;ls); do test -e /usr/bin/$cmd || echo $cmd;done | fmt -w 80| sed 's/.*/ & \\/' + # for cmd in $(cd /pkg/perl-5.12.1-0/bin;ls); do test -e /usr/bin/$cmd || echo $cmd;done | fmt -w 80| sed 's/.*/ & \\/' # for cmd in \ - ansi2html bdf2gdfont.pl bp_aacomp.pl bp_biofetch_genbank_proxy.pl \ - bp_bioflat_index.pl bp_biogetseq.pl bp_blast2tree.pl bp_bulk_load_gff.pl \ - bp_chaos_plot.pl bp_classify_hits_kingdom.pl bp_composite_LD.pl \ - bp_das_server.pl bp_dbsplit.pl bp_download_query_genbank.pl bp_einfo \ - bp_extract_feature_seq.pl bp_fast_load_gff.pl bp_fastam9_to_table.pl \ - bp_fetch.pl bp_filter_search.pl bp_find-blast-matches.pl bp_flanks.pl \ - bp_gccalc.pl bp_genbank2gff.pl bp_genbank2gff3.pl bp_genbank_ref_extractor \ - bp_generate_histogram.pl bp_heterogeneity_test.pl bp_hivq.pl \ - bp_hmmer_to_table.pl bp_index.pl bp_load_gff.pl bp_local_taxonomydb_query.pl \ - bp_make_mrna_protein.pl bp_mask_by_search.pl bp_meta_gff.pl bp_mrtrans.pl \ - bp_mutate.pl bp_netinstall.pl bp_nexus2nh.pl bp_nrdb.pl bp_oligo_count.pl \ - bp_parse_hmmsearch.pl bp_process_gadfly.pl bp_process_sgd.pl \ - bp_process_wormbase.pl bp_query_entrez_taxa.pl bp_remote_blast.pl \ - bp_revtrans-motif.pl bp_search2alnblocks.pl bp_search2gff.pl bp_search2table.pl \ - bp_search2tribe.pl bp_seq_length.pl bp_seqconvert.pl bp_seqcut.pl \ - bp_seqfeature_delete.pl bp_seqfeature_gff3.pl bp_seqfeature_load.pl \ - bp_seqpart.pl bp_seqret.pl bp_seqretsplit.pl bp_split_seq.pl bp_sreformat.pl \ - bp_taxid4species.pl bp_taxonomy2tree.pl bp_translate_seq.pl bp_tree2pag.pl \ - bp_unflatten_seq.pl combig-script.sh combig.pl config_data corelist count.pl \ - count2huge.pl cpan cpan-mirrors cpan2dist cpanel_json_xs cpanfile-dump \ - cpanp cpanp-run-perl crc32 dave dbilogstrip dbiprof dbiproxy dm_date \ - dm_zdump enc2xs encguess extract_vba find-compounds.pl findrule gedi h2ph \ - h2xs htmltree huge-count.pl huge-delete.pl huge-merge.pl huge-sort.pl \ - huge-split.pl hypnotoad instmodsh iperl json_pp json_xs kocos-script.sh \ - kocos.pl kwalitee-metrics l4p-tmpl leo libnetcfg lwp-download lwp-dump \ - lwp-mirror lwp-request markdent-html markdown2pod mech-dump mo-inline \ - modemtest mojo moose-outdated morbo msgconvert mymeta-cpanfile net-server \ + a2p bdf2gdfont.pl bp_aacomp bp_biofetch_genbank_proxy bp_bioflat_index \ + bp_biogetseq bp_dbsplit bp_download_query_genbank bp_einfo \ + bp_extract_feature_seq bp_fastam9_to_table bp_fetch bp_filter_search \ + bp_find-blast-matches bp_flanks bp_gccalc bp_genbank2gff3 \ + bp_genbank_ref_extractor bp_index bp_local_taxonomydb_query \ + bp_make_mrna_protein bp_mask_by_search bp_mrtrans bp_mutate bp_nexus2nh \ + bp_nrdb bp_oligo_count bp_process_gadfly bp_process_sgd bp_query_entrez_taxa \ + bp_remote_blast.pl bp_revtrans-motif bp_search2alnblocks bp_search2gff \ + bp_search2table bp_search2tribe bp_seq_length bp_seqconvert bp_seqcut \ + bp_seqpart bp_seqret bp_seqretsplit bp_split_seq bp_sreformat bp_taxid4species \ + bp_taxonomy2tree bp_translate_seq bp_tree2pag bp_unflatten_seq c2ph \ + combig-script.sh combig.pl config_data corelist count.pl count2huge.pl cpan \ + cpan-mirrors cpan2dist cpanel_json_xs cpanp cpanp-run-perl crc32 db_archive \ + db_checkpoint db_deadlock db_dump db_hotbackup db_load db_printlog db_recover \ + db_sql db_stat db_upgrade db_verify dbilogstrip dbiprof dbiproxy dm_date \ + dm_zdump dprofpp enc2xs encguess extract_vba find-compounds.pl find2perl \ + findrule gedi h2ph h2xs htmltree huge-count.pl huge-delete.pl huge-merge.pl \ + huge-sort.pl huge-split.pl hypnotoad instmodsh json_pp json_xs kocos-script.sh \ + kocos.pl l4p-tmpl leo libnetcfg lwp-download lwp-dump lwp-mirror lwp-request \ + mech-dump mo-inline modemtest mojo moose-outdated morbo msgconvert net-server \ odf2pod odf_set_fields odf_set_title odfbuild odfextract odffilesearch \ odffindbasic odfhighlight odfmetadoc odfsearch oodoc_test oodoc_version \ - package-stash-conflicts pause-permissions pdl pdl2 pdldoc perl perl5.28.1 \ - perlbug perlcritic perldl perldoc perlivp perlsh perlthanks perltidy \ - piconv pl2pm plackup pod2html pod2latex pod2man pod2text pod2usage \ - pod_cover podchecker podselect podspell pptemplate prove ptar ptardiff \ - ptargrep ptked ptksh puudecode puuencode rank-script.sh rank.pl re.pl \ - readline_usb reply scan-perl-prereqs-nqlite schwartzmon shasum snmpkey \ - splain stag-autoschema.pl stag-db.pl stag-diff.pl stag-drawtree.pl \ + package-stash-conflicts pdl pdl2 pdldoc perl5.12.1 perlbug perlcritic perldl \ + perldoc perlivp perlsh perlthanks perltidy piconv pl2pm plackup pod2html \ + pod2latex pod2man pod2text pod2usage pod_cover podchecker podselect podspell \ + pptemplate prove psed pstruct ptar ptardiff ptargrep ptked ptksh puudecode \ + puuencode rank-script.sh rank.pl readline_usb s2p schwartzmon shasum \ + snmpkey splain stag-autoschema.pl stag-db.pl stag-diff.pl stag-drawtree.pl \ stag-filter.pl stag-findsubtree.pl stag-flatten.pl stag-grep.pl stag-handle.pl \ stag-itext2simple.pl stag-itext2sxpr.pl stag-itext2xml.pl stag-join.pl \ stag-merge.pl stag-mogrify.pl stag-parse.pl stag-query.pl stag-splitter.pl \ - stag-view.pl stag-xml2itext.pl statistic.pl test-yaml text2odf text2table \ - tkjpeg tpage ttree ucalc use-devel-checklib widget xpath xsubpp zipdetails \ + stag-view.pl stag-xml2itext.pl statistic.pl streamzip test-yaml text2odf \ + text2table tkjpeg tpage ttree ucalc use-devel-checklib widget xpath \ + xsubpp yamlpp5-events yamlpp5-highlight yamlpp5-load yamlpp5-load-dump \ + yamlpp5-parse-emit zipdetails \ ; do ln "$B/wrapper" "$D$BINDIR/$cmd" done