diff --git a/cufflinks.be0 b/cufflinks.be0
deleted file mode 100755
index 293cfd46f..000000000
--- a/cufflinks.be0
+++ /dev/null
@@ -1,93 +0,0 @@
-#!/usr/bin/env beesh
-
-# BEE_VERSION cufflinks-2.2.1-1
-
-## this file was created by bee init and should be executed to build a
-## bee-package. (Additional hints are located at the end of this file.)
-
-###############################################################################
-## The source URL(s) define the location of the sources that will be
-## downloaded. Version variables may be used to simplify reuse of this bee-file.
-
-SRCURL[0]="http://cole-trapnell-lab.github.io/cufflinks/assets/downloads/cufflinks-${PKGVERSION}.tar.gz"
-
-###############################################################################
-## Add URLs/pathes to patch files to the PATCHURL array.
-## The sources will be patched in the order of the array.
-
-# PATCHURL+=()
-
-###############################################################################
-## Add filename patterns to the EXCLUDE array of files that should not
-## be added to you package but may be present in the image directory.
-
-# EXCLUDE+=()
-
-###############################################################################
-## Uncomment the next statement, if the software may not be able to be build
-## outside the source directory and need to be build inside the source
-## directory.
-
-# build_in_sourcedir
-
-###############################################################################
-## bee cannot detect buildtypes specified in subdirectories.
-## Sometimes packages "hide" the real sources in a subdirectory named
-## 'src' or 'cmake' or ..
-## use 'sourcesubdir_append' to specify this directory if known.
-
-# sourcesubdir_append src
-
-
-###############################################################################
-## Change the default (auto-detected) steps to
-## extract, patch, configure/setup, build and install the software.
-## Make sure the mee_install function does install everything to the
-## image directory "${D}"
-
-#mee_extract() {
-#    bee_extract "${@}"
-#}
-
-#mee_patch() {
-#    bee_patch "${@}"
-#}
-mee_patch_post() {
-    sed -e 's,<Eigen/,<eigen3/Eigen/,g' \
-        -i ${S}/src/jensen_shannon.h \
-           ${S}/src/abundances.cpp \
-           ${S}/src/sampling.h \
-           ${S}/src/abundances.h \
-           ${S}/configure \
-           ${S}/ax_check_eigen.m4
-}
-#mee_configure() {
-#    bee_configure 
-#}
-
-#mee_build() {
-#    bee_build
-#}
-
-#mee_install() {
-#    bee_install
-#}
-## by default this may be 'make install DESTDIR="${D}"'
-
-###############################################################################
-##
-## Additional hints:
-##
-## The name of this bee-file should follow the following naming convention:
-##     pkgname-pkgversion-pkgrevision.bee
-##
-## You may remove all comments as long as SRCURL[0] is set.
-##
-## Everything in this file will be executed in a bash environment.
-##
-## Build the package by executing
-##     './pkg-version-N.bee' or
-##     'beesh ./pkg-version-N.bee'
-##
-## see http://beezinga.org/
-##