From ac53df8f97c97931a8a121b86108a457a192f0a8 Mon Sep 17 00:00:00 2001 From: Donald Buczek Date: Fri, 11 Oct 2019 15:09:40 +0200 Subject: [PATCH] perl-wrapper: Install version 1.1 Install wrapper for commands provided by packaged perl. Note: This commit was cherry-picked from 95d5bdbf7e5f ("perl-wrapper: Install version 1.0") which was applied and later reverted. In contradiction to the commit message title, the initial version was "1.1" not "1.0". We don't correct that so that versions continue to increase. --- perl-wrapper.be0 | 135 +++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 135 insertions(+) create mode 100755 perl-wrapper.be0 diff --git a/perl-wrapper.be0 b/perl-wrapper.be0 new file mode 100755 index 000000000..dc9434e91 --- /dev/null +++ b/perl-wrapper.be0 @@ -0,0 +1,135 @@ +#!/usr/bin/env beesh + +# BEE_VERSION perl-wrapper-1.1-0 + +## this file was created by bee init and should be executed to build a +## bee-package. (Additional hints are located at the end of this file.) + +############################################################################### +## The source URL(s) define the location of the sources that will be +## downloaded. Version variables may be used to simplify reuse of this bee-file. + +SRCURL[0]="" + +############################################################################### +## Add URLs/pathes to patch files to the PATCHURL array. +## The sources will be patched in the order of the array. + +# PATCHURL+=() + +############################################################################### +## Add filename patterns to the EXCLUDE array of files that should not +## be added to you package but may be present in the image directory. + +# EXCLUDE+=() + +############################################################################### +## Uncomment the next statement, if the software may not be able to be built +## outside the source directory and needs to be built inside the source +## directory. + +# build_in_sourcedir + +############################################################################### +## bee cannot detect buildtypes specified in subdirectories. +## Sometimes packages "hide" the real sources in a subdirectory named +## 'src' or 'cmake' or .. +## use 'sourcesubdir_append' to specify this directory if known. + +# sourcesubdir_append src + + +############################################################################### +## Change the default (auto-detected) steps to +## extract, patch, configure/setup, build and install the software. +## Make sure the mee_install function does install everything to the +## image directory "${D}" + +#mee_extract() { +# bee_extract "${@}" +#} + +#mee_patch() { +# bee_patch "${@}" +#} + +#mee_configure() { +# bee_configure +#} + +mee_build() { + echo -e '#! /bin/bash\nprun perl $(basename "$0") "$@"' >wrapper + chmod +x wrapper +} + +mee_install() { + mkdir -p "$D$BINDIR" + + # list generated by + # for cmd in $(cd /pkg/perl-5.28.1-0/bin;ls); do test -e /usr/bin/$cmd || echo $cmd;done | fmt -w 80| sed 's/.*/ & \\/' + # + for cmd in \ + ansi2html bdf2gdfont.pl bp_aacomp.pl bp_biofetch_genbank_proxy.pl \ + bp_bioflat_index.pl bp_biogetseq.pl bp_blast2tree.pl bp_bulk_load_gff.pl \ + bp_chaos_plot.pl bp_classify_hits_kingdom.pl bp_composite_LD.pl \ + bp_das_server.pl bp_dbsplit.pl bp_download_query_genbank.pl bp_einfo \ + bp_extract_feature_seq.pl bp_fast_load_gff.pl bp_fastam9_to_table.pl \ + bp_fetch.pl bp_filter_search.pl bp_find-blast-matches.pl bp_flanks.pl \ + bp_gccalc.pl bp_genbank2gff.pl bp_genbank2gff3.pl bp_genbank_ref_extractor \ + bp_generate_histogram.pl bp_heterogeneity_test.pl bp_hivq.pl \ + bp_hmmer_to_table.pl bp_index.pl bp_load_gff.pl bp_local_taxonomydb_query.pl \ + bp_make_mrna_protein.pl bp_mask_by_search.pl bp_meta_gff.pl bp_mrtrans.pl \ + bp_mutate.pl bp_netinstall.pl bp_nexus2nh.pl bp_nrdb.pl bp_oligo_count.pl \ + bp_parse_hmmsearch.pl bp_process_gadfly.pl bp_process_sgd.pl \ + bp_process_wormbase.pl bp_query_entrez_taxa.pl bp_remote_blast.pl \ + bp_revtrans-motif.pl bp_search2alnblocks.pl bp_search2gff.pl bp_search2table.pl \ + bp_search2tribe.pl bp_seq_length.pl bp_seqconvert.pl bp_seqcut.pl \ + bp_seqfeature_delete.pl bp_seqfeature_gff3.pl bp_seqfeature_load.pl \ + bp_seqpart.pl bp_seqret.pl bp_seqretsplit.pl bp_split_seq.pl bp_sreformat.pl \ + bp_taxid4species.pl bp_taxonomy2tree.pl bp_translate_seq.pl bp_tree2pag.pl \ + bp_unflatten_seq.pl combig-script.sh combig.pl config_data corelist count.pl \ + count2huge.pl cpan cpan-mirrors cpan2dist cpanel_json_xs cpanfile-dump \ + cpanp cpanp-run-perl crc32 dave dbilogstrip dbiprof dbiproxy dm_date \ + dm_zdump enc2xs encguess extract_vba find-compounds.pl findrule gedi h2ph \ + h2xs htmltree huge-count.pl huge-delete.pl huge-merge.pl huge-sort.pl \ + huge-split.pl hypnotoad instmodsh iperl json_pp json_xs kocos-script.sh \ + kocos.pl kwalitee-metrics l4p-tmpl leo libnetcfg lwp-download lwp-dump \ + lwp-mirror lwp-request markdent-html markdown2pod mech-dump mo-inline \ + modemtest mojo moose-outdated morbo msgconvert mymeta-cpanfile net-server \ + odf2pod odf_set_fields odf_set_title odfbuild odfextract odffilesearch \ + odffindbasic odfhighlight odfmetadoc odfsearch oodoc_test oodoc_version \ + package-stash-conflicts pause-permissions pdl pdl2 pdldoc perl perl5.28.1 \ + perlbug perlcritic perldl perldoc perlivp perlsh perlthanks perltidy \ + piconv pl2pm plackup pod2html pod2latex pod2man pod2text pod2usage \ + pod_cover podchecker podselect podspell pptemplate prove ptar ptardiff \ + ptargrep ptked ptksh puudecode puuencode rank-script.sh rank.pl re.pl \ + readline_usb reply scan-perl-prereqs-nqlite schwartzmon shasum snmpkey \ + splain stag-autoschema.pl stag-db.pl stag-diff.pl stag-drawtree.pl \ + stag-filter.pl stag-findsubtree.pl stag-flatten.pl stag-grep.pl stag-handle.pl \ + stag-itext2simple.pl stag-itext2sxpr.pl stag-itext2xml.pl stag-join.pl \ + stag-merge.pl stag-mogrify.pl stag-parse.pl stag-query.pl stag-splitter.pl \ + stag-view.pl stag-xml2itext.pl statistic.pl test-yaml text2odf text2table \ + tkjpeg tpage ttree ucalc use-devel-checklib widget xpath xsubpp zipdetails \ + ; do + ln "$B/wrapper" "$D$BINDIR/$cmd" + done +} +## by default this may be 'make install DESTDIR="${D}"' + +############################################################################### +## +## Additional hints: +## +## The name of this bee-file should follow the following naming convention: +## pkgname-pkgversion-pkgrevision.bee +## +## You may remove all comments as long as SRCURL[0] is set. +## +## Everything in this file will be executed in a bash environment. +## +## Build the package by executing +## './pkg-version-N.bee' or +## 'beesh ./pkg-version-N.bee' +## +## see http://beezinga.org/ +##