From 5ae3aa7a021103702b2cf10d66c63b9eb4ef3226 Mon Sep 17 00:00:00 2001
From: Marius Tolzmann <tolzmann@molgen.mpg.de>
Date: Mon, 21 May 2012 14:56:05 +0200
Subject: [PATCH 1/5] compatibility: New FILES -> CONTENT converter

add a script to convert the old FILES-file to the new CONTENT-file

the script will be installed in LIBEXECDIR/bee/
---
 Makefile                               | 16 ++++-
 src/compat-filesfile2contentfile.sh.in | 85 ++++++++++++++++++++++++++
 2 files changed, 98 insertions(+), 3 deletions(-)
 create mode 100755 src/compat-filesfile2contentfile.sh.in

diff --git a/Makefile b/Makefile
index 6f34565..dd26fa0 100644
--- a/Makefile
+++ b/Makefile
@@ -60,6 +60,8 @@ PROGRAMS_PERL=beefind.pl
 HELPER_BEE_SHELL=bee-init bee-check bee-remove bee-install bee-list bee-query bee-download bee-update
 HELPER_BEE_C=bee-dep
 
+HELPER_SHELL=compat-filesfile2contentfile
+
 LIBRARY_SHELL=beelib.config.sh
 
 BUILDTYPES=configure cmake autogen perl-module perl-module-makemaker make python-module
@@ -88,7 +90,7 @@ compat: compat-bashlt4
 compat-bashlt4: ${COMPAT_BASHLT4}
 	$(call quiet-command, sed ${sed-compat-bashlt4} -i ${COMPAT_BASHLT4}, "COMPAT	$^" )
 
-SHELLSCRIPTS=$(PROGRAMS_SHELL) $(HELPER_BEE_SHELL)
+SHELLSCRIPTS=$(PROGRAMS_SHELL) $(HELPER_BEE_SHELL) $(HELPER_SHELL)
 
 BEEVERSION_OBJECTS=beeversion.o bee_version_parse.o bee_version_compare.o bee_version_output.o
 BEESEP_OBJECTS=beesep.o
@@ -144,7 +146,7 @@ beegetopt: $(addprefix src/, ${BEEGETOPT_OBJECTS})
 	$(call quiet-command,sed ${sed-rules} $< >$@,"SED	$@")
 
 clean:
-	$(call quiet-command,rm -f $(addsuffix .sh,${SHELLSCRIPTS}) $(LIBRARY_SHELL),"CLEAN	<various>.sh")
+	$(call quiet-command,rm -f $(addsuffix .sh,${SHELLSCRIPTS}) $(LIBRARY_SHELL) $(HELPER_SHELL),"CLEAN	<various>.sh")
 	$(call quiet-command,rm -f ${PROGRAMS_PERL},"CLEAN	${PROGRAMS_PERL}")
 	$(call quiet-command,rm -f ${PROGRAMS_C},"CLEAN	${PROGRAMS_C}")
 	$(call quiet-command,rm -f ${HELPER_BEE_C},"CLEAN	${HELPER_BEE_C}")
@@ -154,7 +156,7 @@ clean:
 
 install: install-core install-config
 
-install-core: build install-man install-hooks install-buildtypes install-beeshlib install-tools install-bin
+install-core: build install-man install-hooks install-buildtypes install-beeshlib install-tools install-helper install-bin
 
 install-bin: $(addprefix ${DESTDIR}${BINDIR}/,${PROGRAMS_PERL} ${PROGRAMS_C} ${PROGRAMS_SHELL})
 
@@ -178,6 +180,14 @@ ${DESTDIR}${LIBEXECDIR}/bee/bee.d/%: %.sh install-dir-tools
 ${DESTDIR}${LIBEXECDIR}/bee/bee.d/%: % install-dir-tools
 	$(call quiet-install,0755,$<,$@)
 
+install-helper: $(addprefix ${DESTDIR}${LIBEXECDIR}/bee/,${HELPER_SHELL})
+
+install-dir-helper:
+	$(call quiet-installdir,0755,${DESTDIR}${LIBEXECDIR}/bee)
+
+${DESTDIR}${LIBEXECDIR}/bee/%: %.sh install-dir-helper
+	$(call quiet-install,0755,$<,$@)
+
 install-beeshlib: $(addprefix ${DESTDIR}${LIBEXECDIR}/bee/,${LIBRARY_SHELL})
 
 install-dir-beeshlib:
diff --git a/src/compat-filesfile2contentfile.sh.in b/src/compat-filesfile2contentfile.sh.in
new file mode 100755
index 0000000..a8b6e85
--- /dev/null
+++ b/src/compat-filesfile2contentfile.sh.in
@@ -0,0 +1,85 @@
+#!/bin/bash
+#
+# bee-check - check consistency of installed bee-pkgs
+#
+# Copyright (C) 2009-2011
+#       Marius Tolzmann <tolzmann@molgen.mpg.de>
+#       Tobias Dreyer <dreyer@molgen.mpg.de>
+#       and other bee developers
+#
+# This file is part of bee.
+#
+# bee is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <http://www.gnu.org/licenses/>.
+#
+
+: ${BEESEP=@BINDIR@/beesep}
+
+declare -A hardlink
+
+while read line ; do
+   md5=""
+   data=$(${BEESEP} ${line} 2>/dev/null)
+
+   if [ $? -ne '0' ] ; then
+      echo >&2 "**ERROR** INVALID CONTENT: ${line}"
+      exit 1
+   fi
+
+   eval ${data}
+   
+   if [ $? -ne '0' -o -z "${md5}" ] ; then
+       echo >&2 "**ERROR** UNPARSABLE CONTENT: ${line}"
+       exit 1
+   fi
+
+   if [ "${md5}" = "directory" ] ; then
+       type='directory'
+       unset md5
+   elif [ "${md5}" = "link" ] ; then
+       type='symlink'
+       unset md5
+   elif [ "${md5}" = "block" ] ; then
+       type='block'
+       unset md5
+   elif [ "${md5}" = "char" ] ; then
+       type='char'
+       unset md5
+   else
+       type='regular'
+   fi
+
+   if [ -z "${nlink}" ] ; then
+       nlink=1
+   fi
+
+   if [ "${type}" = "regular" -a ${nlink} -gt 1 ] ; then
+      key=$md5-$size-$nlink
+      if [ -n "${hardlink[$key]}" ] ; then
+         type=hardlink
+         file=${file}//${hardlink[$key]}
+      else
+         hardlink[$key]=$file
+      fi
+   fi
+
+   echo -n "type=${type}"
+   printf  ":mode=0%o"   ${mode} 
+   printf  ":access=0%o" $(( ${mode} & 07777 ))
+   echo -n ":nlink=${nlink}:uid=${uid}:gid=${gid}:size=${size}:mtime=${mtime}"
+   if [ -n "${md5}" ] ; then
+      echo -n ":md5=${md5}"
+   fi
+   echo ":file=${file}"
+   
+done < <(cat $@)

From 73d7b233bf0815194498fcdcbb9112e2f9e79bb6 Mon Sep 17 00:00:00 2001
From: Marius Tolzmann <tolzmann@molgen.mpg.de>
Date: Mon, 21 May 2012 15:04:44 +0200
Subject: [PATCH 2/5] bee-install: Add support for new CONTENT file

---
 src/bee-install.sh.in | 7 +++++++
 1 file changed, 7 insertions(+)

diff --git a/src/bee-install.sh.in b/src/bee-install.sh.in
index 47e5ffd..f0977e1 100644
--- a/src/bee-install.sh.in
+++ b/src/bee-install.sh.in
@@ -360,12 +360,19 @@ function do_install_file() {
     start_cmd tar -x --dereference -${vv}Pf ${file} \
         ${changedir} \
         --transform="s,^FILES$,${BEE_METADIR}/${pkg}/FILES," \
+        --transform="s,^CONTENT$,${BEE_METADIR}/${pkg}/CONTENT," \
         --transform="s,^BUILD$,${BEE_METADIR}/${pkg}/${beefile}," \
         --transform="s,^META$,${BEE_METADIR}/${pkg}/META," \
         --transform="s,^PATCHES,${BEE_METADIR}/${pkg}/PATCHES," \
         --transform="s,^DEPENDENCIES$,${BEE_METADIR}/${pkg}/DEPENDENCIES," \
         --show-transformed-names
 
+    if [ ! -e "${BEE_METADIR}/${pkg}/CONTENT" ] ; then
+        ${BEE_LIBEXECDIR}/bee/compat-filesfile2contentfile \
+           ${BEE_METADIR}/${pkg}/FILES \
+           >${BEE_METADIR}/${pkg}/CONTENT
+    fi
+
     run_hooks post-install ${pkg}
     ${BEE_LIBEXECDIR}/bee/bee.d/bee-check -d ${pkg} > ${BEE_METADIR}/${pkg}/DEPENDENCIES
     ${BEE_LIBEXECDIR}/bee/bee.d/bee-dep update ${pkg}

From 407f531c65b491d2a4a95abdd031073b884a5a50 Mon Sep 17 00:00:00 2001
From: Marius Tolzmann <tolzmann@molgen.mpg.de>
Date: Mon, 21 May 2012 15:30:39 +0200
Subject: [PATCH 3/5] hooks: Add support for new CONTENT file

additional minor cleanup in bee-remove to easier support
new CONTENT file
---
 hooks/gconf-install-schemas.sh    |  2 +-
 hooks/gdk-pixbuf-query-loaders.sh |  2 +-
 hooks/glib-compile-schemas.sh     |  2 +-
 hooks/gtk-update-icon-cache.sh    |  2 +-
 hooks/info-dir.sh                 |  4 ++--
 hooks/ldconfig.sh                 |  2 +-
 hooks/mandb.sh                    |  4 ++--
 hooks/mkfontdir-mkfontscale.sh    |  2 +-
 hooks/systemd-tmpfiles.sh         |  2 +-
 hooks/update-desktop-database.sh  |  2 +-
 hooks/update-mime-database.sh     |  2 +-
 src/bee-remove.sh.in              | 33 +++++++++++++++----------------
 12 files changed, 29 insertions(+), 30 deletions(-)

diff --git a/hooks/gconf-install-schemas.sh b/hooks/gconf-install-schemas.sh
index ca4ad6f..b542b9d 100644
--- a/hooks/gconf-install-schemas.sh
+++ b/hooks/gconf-install-schemas.sh
@@ -38,7 +38,7 @@ fi
 
 case "${action}" in
     "post-install")
-        for s in $(grep -o "/.*gconf.*\.schemas" ${BEE_METADIR}/${pkg}/FILES 2>/dev/null) ; do
+        for s in $(grep -o "/.*gconf.*\.schemas" ${BEE_METADIR}/${pkg}/CONTENT 2>/dev/null) ; do
             echo "installing schema '${s##*/}'"
             ${GCONFTOOL} --install-schema-file ${s} >/dev/null
         done
diff --git a/hooks/gdk-pixbuf-query-loaders.sh b/hooks/gdk-pixbuf-query-loaders.sh
index 3ab84c7..3a658cc 100644
--- a/hooks/gdk-pixbuf-query-loaders.sh
+++ b/hooks/gdk-pixbuf-query-loaders.sh
@@ -41,7 +41,7 @@ if [ -z "${gdk_pixbuf_moduledir}" -o -z "${gdk_pixbuf_cache_file}" ]; then
     exit 0
 fi
 
-if grep -q "file=${gdk_pixbuf_moduledir}" ${BEE_METADIR}/${pkg}/FILES ; then
+if grep -q "file=${gdk_pixbuf_moduledir}" ${BEE_METADIR}/${pkg}/CONTENT ; then
     case "${action}" in
         "post-install")
             rm -f ${gdk_pixbuf_cache_file}
diff --git a/hooks/glib-compile-schemas.sh b/hooks/glib-compile-schemas.sh
index 61bfb3d..45371fc 100644
--- a/hooks/glib-compile-schemas.sh
+++ b/hooks/glib-compile-schemas.sh
@@ -36,7 +36,7 @@ fi
 
 for dir in ${XDG_DATA_DIRS//:/ } ; do
     schema_dir=${dir}/glib-2.0/schemas
-    if grep -q "file=${schema_dir}" ${BEE_METADIR}/${pkg}/FILES ; then
+    if grep -q "file=${schema_dir}" ${BEE_METADIR}/${pkg}/CONTENT ; then
         case "${action}" in
             "post-install")
                 rm -f ${schema_dir}/gschemas.compiled
diff --git a/hooks/gtk-update-icon-cache.sh b/hooks/gtk-update-icon-cache.sh
index 90df83a..d67b358 100644
--- a/hooks/gtk-update-icon-cache.sh
+++ b/hooks/gtk-update-icon-cache.sh
@@ -36,7 +36,7 @@ fi
 
 for dir in ${XDG_DATA_DIRS//:/ } ; do
     icon_base_dir=${dir}/icons
-    for line in $(grep -h "file=${icon_base_dir}/.*/index.theme" ${BEE_METADIR}/${pkg}/FILES) ; do
+    for line in $(grep -h "file=${icon_base_dir}/.*/index.theme" ${BEE_METADIR}/${pkg}/CONTENT) ; do
         eval $(beesep ${line})
         icon_dir=${file%%/index.theme}
         case "${action}" in
diff --git a/hooks/info-dir.sh b/hooks/info-dir.sh
index 2475b32..170d797 100644
--- a/hooks/info-dir.sh
+++ b/hooks/info-dir.sh
@@ -50,13 +50,13 @@ fi
 
 case "${action}" in
     "post-install")
-        for i in $(grep -o "${PKG_INFODIR}.*\.info.*" ${BEE_METADIR}/${pkg}/FILES 2>/dev/null) ; do
+        for i in $(grep -o "${PKG_INFODIR}.*\.info.*" ${BEE_METADIR}/${pkg}/CONTENT 2>/dev/null) ; do
             echo "adding ${i##*/} to ${DIRFILE}"
             ${INSTALLINFO} ${i} ${DIRFILE} >/dev/null
         done
         ;;
     "pre-remove")
-        for i in $(grep -o "${PKG_INFODIR}.*\.info.*" ${BEE_METADIR}/${pkg}/FILES 2>/dev/null) ; do
+        for i in $(grep -o "${PKG_INFODIR}.*\.info.*" ${BEE_METADIR}/${pkg}/CONTENT 2>/dev/null) ; do
             echo "removing ${i##*/} from ${DIRFILE}"
             ${INSTALLINFO} --delete ${i} ${DIRFILE} >/dev/null
         done
diff --git a/hooks/ldconfig.sh b/hooks/ldconfig.sh
index 0233e8a..5f94bc7 100644
--- a/hooks/ldconfig.sh
+++ b/hooks/ldconfig.sh
@@ -38,7 +38,7 @@ if ! which ldconfig >/dev/null 2>&1 ; then
     exit 0
 fi
 
-if grep -q "/lib/" ${BEE_METADIR}/${pkg}/FILES ; then
+if grep -q "/lib/" ${BEE_METADIR}/${pkg}/CONTENT ; then
     case "${action}" in
         "post-install")
             ldconfig
diff --git a/hooks/mandb.sh b/hooks/mandb.sh
index 6cfe35a..62ef6dc 100644
--- a/hooks/mandb.sh
+++ b/hooks/mandb.sh
@@ -44,7 +44,7 @@ fi
 for man_dir in $(beeuniq ${man_dirs//:/ }) ; do
     case "${action}" in
         "post-install")
-            for line in $(grep "file=${man_dir}" ${BEE_METADIR}/${pkg}/FILES) ; do
+            for line in $(grep "file=${man_dir}" ${BEE_METADIR}/${pkg}/CONTENT) ; do
                 eval $(beesep ${line})
                 if [ -f "${file}" -o -L "${file}" ] ; then
                     if  [ -f "/var/cache/man/index.db" ] ; then
@@ -58,7 +58,7 @@ for man_dir in $(beeuniq ${man_dirs//:/ }) ; do
             done
             ;;
         "post-remove")
-            if grep -q "file=${man_dir}" ${BEE_METADIR}/${pkg}/FILES ; then
+            if grep -q "file=${man_dir}" ${BEE_METADIR}/${pkg}/CONTENT ; then
                 echo "updating manual index cache for ${man_dir} .."
                 mandb -q ${man_dir}
             fi
diff --git a/hooks/mkfontdir-mkfontscale.sh b/hooks/mkfontdir-mkfontscale.sh
index 35f47c6..c499abe 100644
--- a/hooks/mkfontdir-mkfontscale.sh
+++ b/hooks/mkfontdir-mkfontscale.sh
@@ -55,7 +55,7 @@ function update_fonts() {
 
 for dir in ${XDG_DATA_DIRS//:/ } ; do
     font_base_dir=${dir}/fonts
-    if grep -q "file=${font_base_dir}" ${BEE_METADIR}/${pkg}/FILES ; then
+    if grep -q "file=${font_base_dir}" ${BEE_METADIR}/${pkg}/CONTENT ; then
         case "${action}" in
             "post-install")
                 clean_font_dirs ${font_base_dir}
diff --git a/hooks/systemd-tmpfiles.sh b/hooks/systemd-tmpfiles.sh
index 6e90a12..173b27f 100644
--- a/hooks/systemd-tmpfiles.sh
+++ b/hooks/systemd-tmpfiles.sh
@@ -40,7 +40,7 @@ fi
 
 case "${action}" in
     "post-install")
-        if egrep --max-count=1 "file=(/etc|/lib|/usr/lib)/tmpfiles.d" ${BEE_METADIR}/${pkg}/FILES >/dev/null 2>&1 ; then
+        if egrep --max-count=1 "file=(/etc|/lib|/usr/lib)/tmpfiles.d" ${BEE_METADIR}/${pkg}/CONTENT >/dev/null 2>&1 ; then
             systemd-tmpfiles --create
         fi
         ;;
diff --git a/hooks/update-desktop-database.sh b/hooks/update-desktop-database.sh
index b9cb433..48d8f48 100644
--- a/hooks/update-desktop-database.sh
+++ b/hooks/update-desktop-database.sh
@@ -36,7 +36,7 @@ fi
 
 for dir in ${XDG_DATA_DIRS//:/ } ; do
     desktop_dir=${dir}/applications
-    if grep -q "file=${desktop_dir}/.*\.desktop" ${BEE_METADIR}/${pkg}/FILES ; then
+    if grep -q "file=${desktop_dir}/.*\.desktop" ${BEE_METADIR}/${pkg}/CONTENT ; then
         case "${action}" in
             "post-install")
                 rm -f ${desktop_dir}/mimeinfo.cache
diff --git a/hooks/update-mime-database.sh b/hooks/update-mime-database.sh
index 77fc472..451aa70 100644
--- a/hooks/update-mime-database.sh
+++ b/hooks/update-mime-database.sh
@@ -36,7 +36,7 @@ fi
 
 for dir in ${XDG_DATA_DIRS//:/ } ; do
     mime_dir=${dir}/mime
-    if grep -q "file=${mime_dir}/packages" ${BEE_METADIR}/${pkg}/FILES ; then
+    if grep -q "file=${mime_dir}/packages" ${BEE_METADIR}/${pkg}/CONTENT ; then
         case "${action}" in
             "post-install")
                 update-mime-database ${mime_dir}
diff --git a/src/bee-remove.sh.in b/src/bee-remove.sh.in
index 6d57239..a32a888 100644
--- a/src/bee-remove.sh.in
+++ b/src/bee-remove.sh.in
@@ -41,15 +41,9 @@ pkg_remove_all() {
 pkg_remove() {
     search=$1
 
-    # pattern is absolute path to pkg
-    if [ -d "${search}" ] ; then
-        do_remove "${search}"
-        return
-    fi
-
     # pattern is a pkg in BEE_METADIR
     if [ -d "${BEE_METADIR}/${search}" ] ; then
-        do_remove ${BEE_METADIR}/${search}
+        do_remove ${search}
         return
     fi
 
@@ -62,15 +56,21 @@ pkg_remove() {
 do_remove() {
     pkg=${1}
 
-    FILES=$(${BEE_LIBEXECDIR}/bee/bee.d/bee-dep remove --print ${pkg##*/})
+    if [ ! -e "${BEE_METADIR}/${pkg}/CONTENT" ] ; then
+        ${BEE_LIBEXECDIR}/bee/compat-filesfile2contentfile \
+           ${BEE_METADIR}/${pkg}/FILES \
+           >${BEE_METADIR}/${pkg}/CONTENT
+    fi
+
+    FILES=$(${BEE_LIBEXECDIR}/bee/bee.d/bee-dep remove --print ${pkg})
     if [ $? -ne 0 ] ; then
-        echo "removal of ${pkg##*/} failed"
+        echo "removal of ${pkg} failed"
         exit 1
     fi
 
     [ "${NOOP}" != "yes" ] && run_hooks pre-remove ${pkg}
 
-    echo "removing package '${pkg##*/}'"
+    echo "removing package '${pkg}'"
 
     # removing files
     for f in $FILES ; do
@@ -83,8 +83,8 @@ do_remove() {
 
     [ "${NOOP}" != "yes" ] && run_hooks post-remove ${pkg}
 
-    if [ -r "${pkg}/META" ] ; then
-        . ${pkg}/META
+    if [ -r "${BEE_METADIR}/${pkg}/META" ] ; then
+        . "${BEE_METADIR}/${pkg}/META"
     fi
 
     # removing empty basedirs
@@ -97,15 +97,13 @@ do_remove() {
         done
     fi
 
-    #cleaning up meta directory
-    if [ -d "${pkg}" ] ; then
-        ${NOOP:+echo} rm -fr ${OPT_VERBOSE:+-v} ${pkg}
-    fi
+    #cleanup meta directory
+    ${NOOP:+echo} rm -fr ${OPT_VERBOSE:+-v} ${BEE_METADIR}/${pkg}
 }
 
 function run_hooks() {
     local action=${1}
-    local pkg=${2##*/}
+    local pkg=${2}
 
     for t in ${BEE_LIBEXECDIR}/bee/hooks.d/* ; do
         ${t} ${action} ${pkg}
@@ -133,6 +131,7 @@ options=$(${BEE_BINDIR}/beegetopt --name bee-remove \
                  --option verbose/v \
                  --option help/h \
                  -- "$@")
+
 if [ $? != 0 ] ; then
     usage
     exit 1

From f926892a962b5d93284fd49cd4c60e40e6de38f8 Mon Sep 17 00:00:00 2001
From: Marius Tolzmann <tolzmann@molgen.mpg.de>
Date: Mon, 21 May 2012 15:51:07 +0200
Subject: [PATCH 4/5] bee-check: Add support for new CONTENT file

---
 src/bee-check.sh.in | 31 +++++++++++++++++++++----------
 1 file changed, 21 insertions(+), 10 deletions(-)

diff --git a/src/bee-check.sh.in b/src/bee-check.sh.in
index 1f772ca..541492e 100644
--- a/src/bee-check.sh.in
+++ b/src/bee-check.sh.in
@@ -65,8 +65,14 @@ pkg_check_deps() {
     fi
 
     if [ "${installed}" ] ; then
-        for i in ${installed} ; do
-            do_check_deps "${i}"
+        for pkg in ${installed} ; do
+            if [ ! -e "${BEE_METADIR}/${pkg}/CONTENT" ] ; then
+                ${BEE_LIBEXECDIR}/bee/compat-filesfile2contentfile \
+                    ${BEE_METADIR}/${pkg}/FILES \
+                    >${BEE_METADIR}/${pkg}/CONTENT
+            fi
+
+            do_check_deps "${pkg}"
         done
     fi
     exit 0
@@ -83,8 +89,13 @@ pkg_check() {
     fi
 
     if [ "${installed}" ] ; then
-        for i in ${installed} ; do
-            do_check "${i}"
+        for pkg in ${installed} ; do
+            if [ ! -e "${BEE_METADIR}/${pkg}/CONTENT" ] ; then
+                ${BEE_LIBEXECDIR}/bee/compat-filesfile2contentfile \
+                    ${BEE_METADIR}/${pkg}/FILES \
+                    >${BEE_METADIR}/${pkg}/CONTENT
+            fi
+            do_check "${pkg}"
         done
         return 0
     fi
@@ -177,7 +188,7 @@ do_check_deps_of_file() {
 ##
 do_check_deps() {
     local pkg=${1}
-    local filesfile=${BEE_METADIR}/${pkg}/FILES
+    local filesfile=${BEE_METADIR}/${pkg}/CONTENT
 
     echo -e "[${pkg}]"
 
@@ -208,9 +219,9 @@ do_check_deps() {
         echo "    size     = ${size}"
         echo "    mtime    = ${mtime}"
 
-        if [ "${md5}" = "link" ] ; then
+        if [ "${type}" = "symlink" ] ; then
             echo "    symlink  = ${symlink}"
-        elif [ "${md5}" != "directory" ] ; then
+        elif [ "${type}" = "regular" -o "${type}" = "hardlink" ] ; then
             echo "    md5      = ${md5}"
         fi
 
@@ -225,7 +236,7 @@ do_check_deps() {
 do_check() {
     local pkg=${1}
 
-    local filesfile=${BEE_METADIR}/${pkg}/FILES
+    local filesfile=${BEE_METADIR}/${pkg}/CONTENT
 
     echo "checking ${pkg} .."
 
@@ -241,7 +252,7 @@ do_check() {
             continue
         fi
 
-        if [ "${md5}" = "link" ] ; then
+        if [ "${type}" = "symlink" ] ; then
             if [ ! -h "${file}" ] ; then
                 echo "  [changed] <was symlink to ${symlink}> ${file}"
             else
@@ -254,7 +265,7 @@ do_check() {
             continue
         fi
 
-        if [ "${md5}" = "directory" ] ; then
+        if [ "${type}" = "directory" ] ; then
             if [ ! -d "${file}" ] ; then
                 echo "  [changed] <was directory> ${file}"
             fi

From 8a7330031e709390975f408e3b49f97ca92b7eed Mon Sep 17 00:00:00 2001
From: Marius Tolzmann <tolzmann@molgen.mpg.de>
Date: Mon, 21 May 2012 15:53:54 +0200
Subject: [PATCH 5/5] bee-query: Add support for new CONTENT file

---
 src/bee-query.sh.in | 22 +++++++++++++++++-----
 1 file changed, 17 insertions(+), 5 deletions(-)

diff --git a/src/bee-query.sh.in b/src/bee-query.sh.in
index 4acc3bf..92fc32e 100644
--- a/src/bee-query.sh.in
+++ b/src/bee-query.sh.in
@@ -65,8 +65,14 @@ query() {
 get_files() {
     pkg=${1}
 
+    if [ ! -e "${BEE_METADIR}/${pkg}/CONTENT" ] ; then
+        ${BEE_LIBEXECDIR}/bee/compat-filesfile2contentfile \
+           ${BEE_METADIR}/${pkg}/FILES \
+           >${BEE_METADIR}/${pkg}/CONTENT
+    fi
+
     for s in "" "${BEE_METADIR}" ; do
-        ff="${s}/${pkg}/FILES"
+        ff="${s}/${pkg}/CONTENT"
         if [ -e "${ff}" ] ; then
             for line in $(cat ${ff}) ; do
                 eval $(${BEESEP} ${line})
@@ -79,10 +85,16 @@ get_files() {
 get_pkgs() {
     f=$1
 
-    for i in $(${BEE_LIBEXECDIR}/bee/bee.d/bee-list --installed) ; do
-        if egrep -q "file=.*${f}" ${BEE_METADIR}/${i}/FILES ; then
-            echo ${i}
-            for line in $(egrep "file=.*${f}" ${BEE_METADIR}/${i}/FILES) ; do
+    for pkg in $(${BEE_LIBEXECDIR}/bee/bee.d/bee-list --installed) ; do
+        if [ ! -e "${BEE_METADIR}/${pkg}/CONTENT" ] ; then
+            ${BEE_LIBEXECDIR}/bee/compat-filesfile2contentfile \
+               ${BEE_METADIR}/${pkg}/FILES \
+               >${BEE_METADIR}/${pkg}/CONTENT
+        fi
+
+        if egrep -q "file=.*${f}" ${BEE_METADIR}/${pkg}/CONTENT ; then
+            echo ${pkg}
+            for line in $(egrep "file=.*${f}" ${BEE_METADIR}/${pkg}/CONTENT) ; do
                 eval $(${BEESEP} ${line})
                 echo "  ${file}"
             done