From b97183599e9dc447f8df66a8812ed6c9867df3f0 Mon Sep 17 00:00:00 2001
From: thomas <kreitler@molgen.mpg.de>
Date: Tue, 2 May 2017 11:30:02 +0200
Subject: [PATCH] mxq global: doxygen adjustment

- change some defaults in config
- add /doxyfiles to .gitignore
---
 .gitignore |  2 ++
 Doxyfile   | 16 ++++++++--------
 2 files changed, 10 insertions(+), 8 deletions(-)

diff --git a/.gitignore b/.gitignore
index 711577ca..e9d5b00d 100644
--- a/.gitignore
+++ b/.gitignore
@@ -44,3 +44,5 @@ gmon.out
 core
 vgcore.*
 .nfs*
+
+/doxyfiles
diff --git a/Doxyfile b/Doxyfile
index e3cb3eb7..088173b2 100644
--- a/Doxyfile
+++ b/Doxyfile
@@ -32,7 +32,7 @@ DOXYFILE_ENCODING      = UTF-8
 # title of most generated pages and in a few other places.
 # The default value is: My Project.
 
-PROJECT_NAME           = "My Project"
+PROJECT_NAME           = "MxQ Stub Documentation"
 
 # The PROJECT_NUMBER tag can be used to enter a project or revision number. This
 # could be handy for archiving the generated documentation or if some version
@@ -58,7 +58,7 @@ PROJECT_LOGO           =
 # entered, it will be relative to the location where doxygen was started. If
 # left blank the current directory will be used.
 
-OUTPUT_DIRECTORY       =
+OUTPUT_DIRECTORY       = ./doxyfiles
 
 # If the CREATE_SUBDIRS tag is set to YES then doxygen will create 4096 sub-
 # directories (in 2 levels) under the output directory of each output format and
@@ -434,7 +434,7 @@ EXTRACT_PACKAGE        = NO
 # included in the documentation.
 # The default value is: NO.
 
-EXTRACT_STATIC         = NO
+EXTRACT_STATIC         = YES
 
 # If the EXTRACT_LOCAL_CLASSES tag is set to YES, classes (and structs) defined
 # locally in source files will be included in the documentation. If set to NO,
@@ -919,7 +919,7 @@ USE_MDFILE_AS_MAINPAGE =
 # also VERBATIM_HEADERS is set to NO.
 # The default value is: NO.
 
-SOURCE_BROWSER         = NO
+SOURCE_BROWSER         = YES
 
 # Setting the INLINE_SOURCES tag to YES will include the body of functions,
 # classes and enums directly into the documentation.
@@ -1366,7 +1366,7 @@ ECLIPSE_DOC_ID         = org.doxygen.Project
 # The default value is: NO.
 # This tag requires that the tag GENERATE_HTML is set to YES.
 
-DISABLE_INDEX          = NO
+DISABLE_INDEX          = YES
 
 # The GENERATE_TREEVIEW tag is used to specify whether a tree-like index
 # structure should be generated to display hierarchical information. If the tag
@@ -1383,7 +1383,7 @@ DISABLE_INDEX          = NO
 # The default value is: NO.
 # This tag requires that the tag GENERATE_HTML is set to YES.
 
-GENERATE_TREEVIEW      = NO
+GENERATE_TREEVIEW      = YES
 
 # The ENUM_VALUES_PER_LINE tag can be used to set the number of enum values that
 # doxygen will group on one line in the generated HTML documentation.
@@ -1571,7 +1571,7 @@ EXTRA_SEARCH_MAPPINGS  =
 # If the GENERATE_LATEX tag is set to YES, doxygen will generate LaTeX output.
 # The default value is: YES.
 
-GENERATE_LATEX         = YES
+GENERATE_LATEX         = NO
 
 # The LATEX_OUTPUT tag is used to specify where the LaTeX docs will be put. If a
 # relative path is entered the value of OUTPUT_DIRECTORY will be put in front of
@@ -2015,7 +2015,7 @@ EXPAND_AS_DEFINED      =
 # The default value is: YES.
 # This tag requires that the tag ENABLE_PREPROCESSING is set to YES.
 
-SKIP_FUNCTION_MACROS   = YES
+SKIP_FUNCTION_MACROS   = NO
 
 #---------------------------------------------------------------------------
 # Configuration options related to external references