From 6cab7a57838d1dc377efb6ddd633e7f329050a08 Mon Sep 17 00:00:00 2001
From: thomas <kreitler@molgen.mpg.de>
Date: Tue, 9 Jan 2024 17:16:31 +0100
Subject: [PATCH] usrlocalpkg: Make python-3.11.7 the new default

Added shortcuts:
- for two Zeiss czi-image tools.
- all deeptool plot commands
- truvari, whatshap are used by ONT pipelines
---
 usrlocalpkg/admin/config | 10 +++++++---
 1 file changed, 7 insertions(+), 3 deletions(-)

diff --git a/usrlocalpkg/admin/config b/usrlocalpkg/admin/config
index 4523cdd..f750edf 100644
--- a/usrlocalpkg/admin/config
+++ b/usrlocalpkg/admin/config
@@ -1437,15 +1437,13 @@ python-3.11=python-3.11.7-0
 	python3.11-config
 	pip3.11
 	pydoc3.11
-	truvari
-	whatshap
 
 python3.11=python-3.11
 
 
 # b) default python, see PEP 0394 too
 
-python-3=python-3.10
+python-3=python-3.11
 	python3
 	python3-config
 	idle3=idle
@@ -1468,6 +1466,8 @@ python=python-3
   computeMatrixOperations
   cooler
   cutadapt
+  czi2tif
+  czifile
   deeptools
   git-cola
   git-dag
@@ -1489,16 +1489,20 @@ python=python-3
   pip
   plotCorrelation
   plotCoverage
+  plotEnrichment
   plotFingerprint
   plotHeatmap
   plotPCA
+  plotProfile
   snakemake
   spyder
   stg
   tadtool
+  truvari
   umi_tools
   virtualenv
   virtualenv3=virtualenv
+  whatshap
 
 pypy=pypy-3.10-v7.3.13-0
 	pypy