From af5de8127814827cd3271697073d77e3e715fadf Mon Sep 17 00:00:00 2001
From: thomas <kreitler@molgen.mpg.de>
Date: Mon, 29 Mar 2021 18:37:58 +0200
Subject: [PATCH] usrlocalpackge: Default to python-3.8.8-0

In the wake of this update some common tools in bin are
updated too:

  - meson 0.54.0 -> 0.57.1
  - snakemake 5.13.0 -> 6.0.5
  - cuda used: 10.2.89 -> 11.1.1
---
 usrlocalpkg/admin/config | 38 ++++++++++++++++++++++++--------------
 1 file changed, 24 insertions(+), 14 deletions(-)

diff --git a/usrlocalpkg/admin/config b/usrlocalpkg/admin/config
index 206cde4..ece303d 100644
--- a/usrlocalpkg/admin/config
+++ b/usrlocalpkg/admin/config
@@ -1342,28 +1342,27 @@ python-3.8=python-3.8.8-0
 	python3.8-config
 	pip3.8
 	pydoc3.8
-	thonny
-	idr
 
 python3.8=python-3.8
 
-# b) manage python based tools (meson, snakemake, ...), default python
+# b) default python, see PEP 0394 too
 
-python-3=python-3.7
-	python3			# PEP 0394 https://www.python.org/dev/peps/pep-0394/
-	python3-config		# PEP 0394
-	idle3=idle		# PEP 0394
-	pydoc3=pydoc		# PEP 0394
+python-3=python-3.8
+	python3
+	python3-config
+	idle3=idle
+	pydoc3=pydoc
 	pip3
 	ipython3
-	meson
-	snakemake
-	jupyter-lab
-	virtualenv3=virtualenv
 
 python3=python-3
 
+# c) manage python based tools (meson, snakemake, ...)
+# mind python3-wrapper.be0
+
 python=python-3
+  bamCompare
+  bamCoverage
   cooler
   cooltools
   cutadapt
@@ -1371,12 +1370,23 @@ python=python-3
   hic2cool
   htseq-count
   htseq-qa
+  idr
   ipython
   jupyter
-  umi_tools
+  jupyter-lab
+  meson
+  multiqc
+  nbshow
+  pairtools
+  pgt
   pip
+  pyGenomeTracks
+  snakemake
+  tadtool
+  thonny
+  umi_tools
   virtualenv
-  multiqc
+  virtualenv3=virtualenv
 
 rstudio-1.1.383-0
 	rstudio-1.1=rstudio