charliecloud-0.32-1.build.sh

#! /bin/sh

set -xe
umask 022

PKG=charliecloud
VERSION=0.32
BUILD=1

PATH=/bin:/usr/bin:/usr/sbin:/usr/local/bin:/usr/local/package/bin
PREFIX=/pkg/$PKG-$VERSION-$BUILD
if [ -n "$TESTING" ]; then PREFIX=/scratch/local2/$PKG-$VERSION-$BUILD ; fi

mkdir -p $PREFIX
cat >$PREFIX/profile <<-EOF
	#source nvidia-container-toolkit
	PATH=$PREFIX/bin:\$PATH
	if [ -d $PREFIX/.compatlibs ]; then export LD_LIBRARY_PATH=$PREFIX/.compatlibs\${LD_LIBRARY_PATH:+:\$LD_LIBRARY_PATH} ; fi
EOF

source $PREFIX/profile

# needed for ~/.cache/go-build ...
BUILD_TMPDIR=/scratch/local2/$PKG-$VERSION-$BUILD.$USER.build.tmp
test -d $BUILD_TMPDIR && ( chmod -R u+rwx $BUILD_TMPDIR || true ; rm -rf $BUILD_TMPDIR )
mkdir -p $BUILD_TMPDIR/home
export TMPDIR=$BUILD_TMPDIR
export HOME=$BUILD_TMPDIR/home

mkdir -p $PREFIX/build
cd $PREFIX/build

# start with libnvidia-container and nvidia-container-toolkit

(
  VERSION=1.13.1
  # orig: https://github.com/NVIDIA/libnvidia-container/archive/refs/tags/v1.13.1.tar.gz
  BEEHIVE=https://beehive.molgen.mpg.de/ed31ad76317bf46ee29205d10adf457d/libnvidia-container-1.13.1.tar.gz

  test -e libnvidia-container-$VERSION.tar.gz || wget -nv $BEEHIVE
  test -d libnvidia-container-$VERSION || tar -xf libnvidia-container-$VERSION.tar.gz

  cd libnvidia-container-$VERSION

  # remove "libnvidia-ngx.so" from the list of libs to be checked, focus on the basics now.
  sed -i -e '/^\s\s*"libnvidia-ngx.so"/ s,"lib,//"lib,' src/nvc_info.c

  # during the build some stuff gets downloaded, and the lsb_release command is required from within
  # a make file, so give the people what they want ...
  # (D. would not like what I would have liked to have written ...)
  mkdir -p $PREFIX/bin
  ln -sfv /usr/bin/chicken $PREFIX/bin/lsb_release

  make install prefix=$PREFIX REVISION=mariux WITH_TIRPC=yes WITH_SECCOMP=no

  cd $PREFIX/lib
  ln -svf libnvidia-container.so.1.13.1 libnvidia-container.so.1
  ln -svf libnvidia-container-go.so.1.13.1 libnvidia-container-go.so.1
  
  rm -v $PREFIX/bin/lsb_release # and free the chicken again :)
)

(
  VERSION=1.13.1
  # orig: https://github.com/NVIDIA/nvidia-container-toolkit/archive/refs/tags/v1.13.1.tar.gz
  BEEHIVE=https://beehive.molgen.mpg.de/4336b6fe833e1b52e24a3e157fb843b4/nvidia-container-toolkit-1.13.1.tar.gz
  test -e nvidia-container-toolkit-$VERSION.tar.gz || wget -nv $BEEHIVE
  test -d nvidia-container-toolkit-$VERSION || tar -xf nvidia-container-toolkit-$VERSION.tar.gz

  cd nvidia-container-toolkit-$VERSION

  mkdir -p bin

  GO_LDFLAGS="-Wl,-z,lazy,${LDFLAGS}" \
  GO111MODULE=auto \
  GOPATH="$PWD/gopath" \
  go build -v \
    -modcacherw \
    -buildmode=pie \
    -gcflags "all=-trimpath=${PWD}" \
    -asmflags "all=-trimpath=${PWD}" \
    -ldflags "-s -w -extldflags=${GO_LDFLAGS/%,/}" \
    -o bin \
    "./..."

  install -D -m755 "./bin/nvidia-container-runtime-hook" "$PREFIX/bin/nvidia-container-runtime-hook"
  install -D -m755 "./bin/nvidia-ctk" "$PREFIX/bin/nvidia-ctk"
  install -D -m644 "./config/config.toml.rpm-yum" "$PREFIX/etc/nvidia-container-runtime/config.toml"
  install -D -m644 "./oci-nvidia-hook.json" "$PREFIX/share/containers/oci/hooks.d/00-oci-nvidia-hook.json"
  install -D -m644 "./LICENSE" "$PREFIX/share/licenses/$PKG-$VERSION/LICENSE"
  ln -vsf nvidia-container-runtime-hook $PREFIX/bin/nvidia-container-toolkit
)

# orig: https://github.com/hpc/charliecloud/releases/download/v0.32/charliecloud-0.32.tar.gz
BEEHIVE=https://beehive.molgen.mpg.de/d5a31bae85d99179dc2dd884e6ff5dd5/charliecloud-0.32.tar.gz

test -e charliecloud-$VERSION.tar.gz || wget --no-verbose $BEEHIVE
test -d charliecloud-$VERSION || tar -xf charliecloud-$VERSION.tar.gz

cd charliecloud-$VERSION

# an upcoming release of nextflow will make this one obsolete :/
# (basically reverting hpc/charliecloud#1536)

cat <<- PATCH | patch -p0 --verbose
	--- bin/ch-run.c.dist   2023-03-14 20:43:52.000000000 +0100
	+++ bin/ch-run.c        2023-05-17 14:07:58.825040328 +0200
	@@ -58,2 +58,3 @@
	    { "mount",         'm', "DIR",  0, "SquashFS mount point"},
	+   { "no-home",        -2, 0,      0, "(ignored)"},
	    { "no-passwd",      -9, 0,      0, "don't bind-mount /etc/{passwd,group}"},
	@@ -387,2 +388,4 @@
	    switch (key) {
	+   case -2: // --no-home, a noop.
	+      break;
	    case -3: // --join-ct
PATCH

./configure --prefix=$PREFIX
nice -12 make -j $(( $(nproc) * 4 / 5 + 1 ))
make install

exit