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Anaconda3-5.0.1-0.build.sh
CellProfiler-2.2.0-0.build.sh
CellProfiler-3.1.5-0.build.sh
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LibreCAD-2.2.0.rc1-0.build.sh
R-3.3.3-0.build.sh
R-3.3.3-1.build.sh
R-3.3.3-2.build.sh
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R-3.5.1-1.build.sh
R-3.5.1-2.build.sh
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R-3.5.3-0.build.sh
R-3.6.0-0.build.sh
R-3.6.1-0.build.sh
R-3.6.1-1.build.sh
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R-4.0.1-0.build.sh
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R-4.2.1-0.build.sh
R-4.2.2-0.build.sh
R-4.3.0-0.build.sh
R-4.4.0-0.build.sh
R-4.4.1-0.build.sh
R-devel-2017-02-02-0.build.sh
R-devel-2017-02-02-1.build.sh
TEMPLATE.sh
apache-ant-1.10.12-0.build.sh
apache-maven-3.6.0-0.build.sh
apache-maven-3.8.4-0.build.sh
apptainer-1.1.9-0.build.sh
apptainer-1.2.4-0.build.sh
apptainer-1.3.4-0.build.sh
atom-1.60.0-0.build.sh
atom-1.60.0-1.build.sh
audacity-2.4.2-0.build.sh
avidemux-2.7.1-0.build.sh
avidemux-2.8.0-0.build.sh
bazel-0.28.1-0.build.sh
bazel-3.4.1-0.build.sh
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bazel-5.1.0-0.build.sh
bazel-5.4.1-0.build.sh
bazel-6.2.1-0.build.sh
bmake-20230522-0.build.sh
boost-1.63.0-0.build.sh
boost-1.73.0-0.build.sh
boost-1.86.0-0.build.sh
bpftrace-0.20.3-0.build.sh
brave-browser-0.64.60-0.build.sh
brave-browser-0.66.101-0.build.sh
brave-browser-1.20.108-0.build.sh
brave-browser-1.29.79-0.build.sh
brlcad-7.28.0-0.build.sh
charliecloud-0.30-0.build.sh
charliecloud-0.31-0.build.sh
charliecloud-0.32-0.build.sh
charliecloud-0.32-1.build.sh
charliecloud-0.34-0.build.sh
chromium-100.0.4896.60-0.build.sh
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chromium-81.0.4044.92-0.build.sh
chromium-85.0.4183.121-0.build.sh
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chromium-89.0.4389.128-0.build.sh
chromium-89.0.4389.90-0.build.sh
chromium-98.0.4758.80-0.build.sh
claws-mail-3.17.4-0.build.sh
codium-1.93.0.24253-0.build.sh
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cuda-10.0.130-0.build.sh
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cuda-11.1.1-0.build.sh
cuda-11.3.1-0.build.sh
cuda-11.5.2-0.build.sh
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cuda-12.1.0-0.build.sh
cuda-9.0.176-0.build.sh
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cuda-9.1.85-0.build.sh
cuda-9.2.148-0.build.sh
cufflinks-2.2.1-2.build.sh
cytoscape-3.9.1-0.build.sh
fontforge-20200314-0.build.sh
freecad-0.20-0.build.sh
gcc-10.1.0-0.build.sh
gcc-10.2.0-0.build.sh
gcc-10.3.0-0.build.sh
gcc-11.1.0-0.build.sh
gcc-12.2.0-0.build.sh
gcc-13.2.0-0.build.sh
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gcc-7.3.0-0.build.sh
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gcc-8.3.0-0.build.sh
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inkscape-0.92.1-0.build.sh
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inkscape-1.0-0.build.sh
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inkscape-1.1.1-0.build.sh
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inkscape-1.2.2-0.build.sh
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inkscape-1.3.2-0.build.sh
inkscape-1.4-0.build.sh
jdk-7u80-1.build.sh
jdk-8u141-0.build.sh
jdk-8u181-0.build.sh
jdk-9.0.1-0.build.sh
julia-0.6.4-0.build.sh
julia-1.0.0-0.build.sh
julia-1.1.0-0.build.sh
julia-1.6.1-0.build.sh
libheif-1.6.0-0.build.sh
llvm-12.0.1-0.build.sh
llvm-13.0.1-0.build.sh
llvm-15.0.4-0.build.sh
llvm-16.0.1-0.build.sh
llvm-17.0.6-0.build.sh
meld-3.20.1-0.build.sh
meme-5.1.1-0.build.sh
meme-5.3.0-0.build.sh
nedit-ng-2020.1.75800b6bd-0.build.sh
nextflow-22.10.0-0.build.sh
nextflow-23.04.1-0.build.sh
nextflow-23.10.0-0.build.sh
nextflow-23.10.0-1.build.sh
node-10.13.0-0.build.sh
node-10.16.0-0.build.sh
node-12.13.0-0.build.sh
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node-14.16.0-0.build.sh
node-14.17.1-0.build.sh
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node-16.17.0-0.build.sh
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node-20.12.2-0.build.sh
node-20.13.1-0.build.sh
node-20.9.0-0.build.sh
node-22.11.0-0.build.sh
node-8.11.4-0.build.sh
ocaml-4.08.1-0.build.sh
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openjdk-14.0.2.12-0.build.sh
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openjdk-7u181-0.build.sh
openjdk-8u171-0.build.sh
orca-1.2.1-0.build.sh
orca-1.3.1-0.build.sh
pdftk-3.3.2-0.build.sh
perl-5.12.1-0.build.sh
perl-5.18.2-0.build.sh
perl-5.24.1-0.build.sh
perl-5.24.1-1.build.sh
perl-5.24.1-2.build.sh
perl-5.26.1-0.build.sh
perl-5.26.1-1.build.sh
perl-5.26.1-2.build.sh
perl-5.26.1-3.build.sh
perl-5.26.1-4.build.sh
perl-5.26.1-5.build.sh
perl-5.26.2-1.build.sh
perl-5.28.1-0.build.sh
perl-5.34.0-0.build.sh
proot-5.4.0-0.build.sh
pulsar-1.113.0-0.build.sh
pymol-open-source-2.5.0-0.build.sh
pypy-3.10-v7.3.13-0.build.sh
python-2.7.13-0.build.sh
python-2.7.13-1.build.sh
python-2.7.13-2.build.sh
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python-2.7.14-2.build.sh
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python-2.7.16-0.build.sh
python-3.10.10-0.build.sh
python-3.10.10-1.build.sh
python-3.10.12-0.build.sh
python-3.10.7-0.build.sh
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python-3.11.7-0.build.sh
python-3.11.7-1.build.sh
python-3.6.0-0.build.sh
python-3.6.2-0.build.sh
python-3.6.4-0.build.sh
python-3.6.4-1.build.sh
python-3.6.4-2.build.sh
python-3.6.6-0.build.sh
python-3.6.6-1.build.sh
python-3.7.1-0.build.sh
python-3.7.1-1.build.sh
python-3.7.1-2.build.sh
python-3.7.3-0.build.sh
python-3.7.4-0.build.sh
python-3.7.4-1.build.sh
python-3.7.4-2.build.sh
python-3.7.7-0.build.sh
python-3.8.6-0.build.sh
python-3.8.7-0.build.sh
python-3.8.8-0.build.sh
python-3.8.9-0.build.sh
python-3.8.9-1.build.sh
python-3.9.12-0.build.sh
python-3.9.6-0.build.sh
python-3.9.7-0.build.sh
qemu-3.1.1-0.build.sh
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qemu-5.0.0-0.build.sh
qemu-5.1.0-0.build.sh
qemu-6.0.0-0.build.sh
qemu-6.2.0-0.build.sh
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qemu-7.2.0-0.build.sh
qemu-7.2.0-1.build.sh
qt-5.12.7-0.build.sh
qt-6.2.4-0.build.sh
relion-3.0.5-0.build.sh
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rstudio-1.1.128-0.build.sh
rstudio-1.1.232-0.build.sh
rstudio-1.1.30-0.build.sh
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rstudio-1.1.444-0.build.sh
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rstudio-1.4.1103-0.build.sh
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rstudio-debpkg-1.4.1717-0.build.sh
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rustc-1.29.2-0.build.sh
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signal-desktop-1.25.3-0.build.sh
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snakemake-7.1.1-0.build.sh
sra-tools-2.10.8-0.build.sh
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stellarium-0.18.1-0.build.sh
stellarium-0.19.2-0.build.sh
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stellarium-0.22.2-0.build.sh
tcc-0.9.27-0.build.sh
tcl-8.6.8-0.build.sh
texinfo-4.13a-0.build.sh
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xfig-3.2.7-1.build.sh
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#! /bin/sh set -xe # COOKIE=$(mcookie); grep -v V_GREP_ME $0 > /dev/shm/runme-$COOKIE.sh ; sleep 1; exec bash /dev/shm/runme-$COOKIE.sh PKG=perl VERSION=5.18.2 BUILD=0 PREFIX=/pkg/$PKG-$VERSION-$BUILD if [ -n "$TESTING" ]; then PREFIX=/dev/shm/$PKG-$VERSION-$BUILD ; fi if false; then # force complete rebuild, but keep downloads cd $PREFIX # sanity check before we go berserk test -e build/perl-$VERSION.tar.gz || exit 1 find . -maxdepth 1 -not -name . -not -name build -exec rm -rf {} \; find build -maxdepth 1 -not -name build -not -name "*.tar*" -exec rm -rf {} \; fi PATH=/bin:/usr/bin:/usr/sbin:/usr/local/package/bin:/usr/local/bin mkdir -p $PREFIX cat >$PREFIX/profile <<-EOF PATH=$PREFIX/bin:\$PATH LD_LIBRARY_PATH=$PREFIX/lib\${LD_LIBRARY_PATH:+:\$LD_LIBRARY_PATH} if [ -d $PREFIX/.compatlibs ]; then export LD_LIBRARY_PATH=$PREFIX/.compatlibs\${LD_LIBRARY_PATH:+:\$LD_LIBRARY_PATH} ; fi EOF . $PREFIX/profile # Some cpan mopdule tests fail when build directory is on # nfs, because they try to remove directories with unlinked # but opened files in it. # Additionally we want a clean envirnoment and a local cpan scratch # HOME=/dev/shm/$PKG-$VERSION-$BUILD.build.home.tmp mkdir -p $HOME exec </dev/null # to many cpan modules might ask something # Tk test needs display # if [ -z "$DISPLAY" ]; then echo "DISPLAY not set. Required for Tk tests." >&2 exit 1 fi function plaininstall() { local dir=$1 local tar=$2 local url=$3 local flags=$4 ( cd $PREFIX/build test -e $tar || wget $url test -d $dir || tar xvf $tar cd $dir ./configure --prefix=$PREFIX $flags || ./config --prefix=$PREFIX $flags make -j $(nproc) make install ) } # If you hit errors and want to rerun from where you failed, # use "if false","fi" to avoid rebuilding everything before # the error. # # A good point to place the "if false" is here. # # Just uncomment and move the "fi" line to where # you want to restart. # #if false; then ######################################################### DEBUG #fi ######################################################### DEBUG mkdir -p $PREFIX/build cd $PREFIX/build # Net::SSLeay-1.85 stumbles with openssl-1.1.* # so install the previous openssl release in the package. # an onther option would have been the current devel version # https://cpan.metacpan.org/authors/id/R/RA/RADIATOR/Net-SSLeay-1.86_07.tar.gz # but I have no clue how close this one is to a stable module. plaininstall \ openssl-1.0.2q \ openssl-1.0.2q.tar.gz \ https://www.openssl.org/source/openssl-1.0.2q.tar.gz \ "--openssldir=$PREFIX/share shared" rm $PREFIX/share/man/man3/* # ~ 4000 pages that no one will read # The problem with a git checkout is, that the perl build system does many things # differentily when is sees .git - e.g. run additional developer checks. #test -d perl || git clone https://perl5.git.perl.org/perl.git #cd perl #git checkout "v$VERSION" ; git reset --hard test -e perl-$VERSION.tar.gz || wget http://www.cpan.org/src/5.0/perl-$VERSION.tar.gz test -d perl-$VERSION || tar xf perl-$VERSION.tar.gz cd perl-$VERSION # Note: make test below would fail with: # ext/Errno/t/Errno ........... FAILED--Further testing stopped: No errno's are exported # Cure: # https://rt.perl.org/Public/Bug/Display.html?id=123784 # ... caused by a change in GCC 5.0's preprocesor # ... Simple work-around is to call the preprocessor with -P option sed -i -e '/"$cppstdin $Config/ s/cppstdin/cppstdin -P/' ext/Errno/Errno_pm.PL # and from the same thread, fix a h2ph error patch --read-only=ignore --verbose -p1 < /src/mariux/patches/0001-h2ph-correct-handling-of-hex-constants-for-the-pream.patch # -d : use defaults for all answers. # -e : go on without questioning past the production of config.sh. # -s : silent mode, only echoes questions and essential information. # -Dusedevel : allow devel (uneven minor) versions. Prevents bin/perl->bin/perlVERSION symlink # -Duseshrplib : build shared perl library (required when perl is to be included in a shared library) # -DEBUGGING : add debugging code (perl -D) # ./Configure \ -des \ -Duseshrplib \ -Dusethreads \ -Duseithreads \ -Duselongdouble \ -Dprefix=$PREFIX make -j$(nproc) # Note: If you get a failure in porting/utils test here, it might be, that we are # running cpan somewhere else which leads to an extra and unexpected "\n" being # emitted by CPAN.pm BEGIN and a failure of the test (which does "perl -c CPAN.pm") make test make install cd $PREFIX; test -e $HOME/.cpan/CPAN/MyConfig.pm && rm $HOME/.cpan/CPAN/MyConfig.pm cpan</dev/null # cpan -i CPAN # Too many modules "recommend" stupid things like mod_perl # do not auto install recommended modules perl -MCPAN <<'_EOF_' CPAN::HandleConfig->load(); CPAN::Shell->o('conf','recommends_policy',0); CPAN::Shell->o('conf','commit'); _EOF_ cpan YAML # avoid "'YAML' not installed, will not store persistent state" messages OPENSSL_PREFIX=$PREFIX cpan Net::SSLeay cpan -u # now update everything we already have, do this after the initial install of Net::SSLeay (otherwise cpan will go for it...) # After the update we have a new ExtUtils::MakeMaker. # Patch this version to avoid stomping on a perl bug # We've got this when building net-snmp (down below). # Errors: # "panic: attempt to copy freed scalar" # "Bizarre copy of HASH in list assignment# # this is from perl bug: # https://rt.perl.org/Public/Bug/Display.html?id=77706 # triggered by ExtUtils::MakeMaker. # This patch prevents this # (cd lib/site_perl/$VERSION/ExtUtils; patch -N -p1 < /src/mariux/patches/MakeMaker-0001-MakeMaker.pm-Avoid-triggering-perl-bug.patch) || true # These two with -T (without test), because the tests are interactive and access /dev/tty # Do these first, because they are required by Bundle::CPAN # cpan -T Term::ReadLine::Perl cpan -T Term::ReadLine::Gnu # Now the rest of Bundle::CPAN first, so that we use latest code for the following # installations # cpan Bundle::CPAN # Bug in HTTP-Message-6.17.tar.gz: # # https://github.com/libwww-perl/HTTP-Message/issues/107 # https://github.com/libwww-perl/HTTP-Message/pull/108 # Until fixed use 6.16 # cpan O/OA/OALDERS/HTTP-Message-6.16.tar.gz # mod_perl (Apache::*, Bundle::Apache, mod_perl, modPerl_hooks) is broken. # Usually it wants Apache httpd source to compile and keeps asking for it forever if it # doesn't find it. # we could install it without Access to sources # perl -MCPAN <<'_EOF_' # CPAN::HandleConfig->load; # $CPAN::Config->{'makepl_arg'}='NO_HTTPD=1'; # CPAN::Shell->install('Apache'); # _EOF_ # but its broken anyway (needs a patch to compile against # current perl) and the version 1.* branch has not been updated # for a long time. leave it out and everything which depends on it #cpan Bundle::Apache # Tests for GD fail # The seventh image in den GD.t test looks slightly # different. Maybe small difference in TrueType font. # # Do it first, otherwise we are pulled by Chart::Base # cpan -T GD # Now modules (from autobundle of /usr/local/ installation and manual cleanup and some deduplication) # cpan AE cpan Algorithm::Diff cpan Algorithm::DiffOld cpan AnyEvent cpan AppConfig cpan Archive::Extract cpan Archive::Zip cpan Attribute::Params::Validate cpan Authen::SASL cpan B::Keywords cpan BerkeleyDB cpan Bit::Vector cpan CGI cpan CGI::Fast cpan CPAN::Admin cpan CPANPLUS cpan -T Cache::Memcached # test fails with ver. 1.30 cpan Capture::Tiny cpan Carp::Clan cpan Chart::Base cpan Class::Accessor cpan Class::Data::Inheritable cpan Class::ISA cpan Class::Inspector cpan Class::Load cpan Class::Singleton cpan Class::Tiny PERL5LIB=".${PERL5LIB:+:$PERL5LIB}" cpan Class::Trigger cpan Clone cpan Config::General cpan Config::Tiny cpan Crypt::OpenSSL::RSA cpan Crypt::OpenSSL::Random cpan Crypt::RC4 cpan DBD::SQLite cpan DBD::mysql cpan DBI cpan File::Flock # required by Daemon::Generic cpan Daemon::Generic cpan Data::Grove cpan Data::ObjectDriver cpan Data::OptList cpan Data::Stag cpan Date::Calendar cpan Date::Parse PERL5LIB=".${PERL5LIB:+:$PERL5LIB}" cpan Test::utf8 # required by Test::File::ShareDir::Dist cpan Test::File::ShareDir::Dist # required by DateTime::Locale cpan DateTime::Locale # required by DateTime cpan DateTime cpan DateTime::Locale cpan DateTime::TimeZone cpan Devel::CheckLib cpan Devel::GlobalDestruction cpan Devel::InnerPackage cpan Devel::SelfStubber cpan Devel::StackTrace cpan Devel::StackTrace::AsHTML cpan Devel::Symdump cpan Device::SerialPort cpan Digest::HMAC cpan Digest::Perl::MD5 cpan Digest::SHA1 cpan Dist::CheckConflicts cpan Email::Abstract cpan Email::Address cpan Email::Date::Format cpan Email::FolderType cpan Email::LocalDelivery cpan Email::MIME cpan Email::MIME::Attachment::Stripper cpan Email::MIME::ContentType cpan Email::MIME::Encodings cpan Email::MessageID cpan Email::Outlook::Message cpan Email::Reply cpan Email::Send cpan Email::Simple cpan Encode::Detect cpan Encode::Locale cpan Eval::LineNumbers cpan Event cpan Exception::Class cpan ExtUtils::PkgConfig cpan FCGI cpan File::CheckTree cpan File::Copy::Recursive cpan -f IO::Event # for File::Flock cpan File::Flock cpan File::FnMatch cpan File::HomeDir cpan File::Listing cpan File::Path::Expand cpan File::Remove cpan File::ShareDir cpan File::Slurp cpan File::Which cpan Filesys::Notify::Simple cpan Filter::Util::Exec cpan Font::AFM cpan Font::TTF cpan GD::Graph cpan GD::Graph::histogram cpan GD::SVG cpan GD::Text cpan Glib cpan Graph cpan Graphics::ColorNames cpan Graphics::ColorNames::HTML cpan Graphics::ColorNames::Windows cpan Graphics::ColorNames::Netscape cpan Graphics::ColorNames::Mozilla cpan Graphics::ColorNames::IE cpan Graphics::ColorNames::SVG cpan Graphics::ColorObject cpan HTML::Tree cpan HTML::Parser cpan HTML::Form cpan HTML::Formatter cpan HTML::Scrubber cpan HTML::TableParser cpan HTML::Tagset cpan HTML::TreeBuilder cpan HTTP::Body cpan HTTP::Cookies cpan HTTP::DAV # note: tests fail if cpan build dir is on nfs cpan HTTP::Daemon cpan HTTP::Date cpan HTTP::Negotiate cpan HTTP::Server::Simple cpan Hash::MultiValue cpan Hook::LexWrap cpan IO::All cpan IO::CaptureOutput cpan IO::Multiplex cpan IO::Pty cpan IO::Socket::SSL cpan IO::String cpan IO::Stringy cpan IPC::Run cpan IPC::Run3 cpan Inline cpan Inline::C cpan JSON cpan JSON::PP::Compat5006 # Wants Plack, the other moose-alike monster! (s.a.) # PERL5LIB=".${PERL5LIB:+:$PERL5LIB}" cpan Class::Accessor::Lite # required by JSON::RPC # cpan JSON::RPC cpan JSON::XS cpan LWP cpan LWP::Protocol::https # replaces Crypt::SSL cpan Lingua::EN::Inflect cpan Linux::Inotify2 PERL5LIB=".${PERL5LIB:+:$PERL5LIB}" cpan Linux::USBKeyboard cpan List::MoreUtils cpan Log::Message cpan Log::Log4perl cpan MIME::Tools cpan MRO::Compat cpan Mail::Box cpan Mail::Box::IMAP4 cpan Mail::Box::POP3 cpan Mail::DKIM cpan Mail::Util cpan Mail::IMAPClient cpan Mail::Identity cpan Mail::Message cpan Mail::Transport cpan Math::Bezier cpan Math::Calc::Units cpan Math::Interpolate cpan Math::IntervalSearch cpan Math::Random::ISAAC cpan Math::Random::ISAAC::PP cpan Math::Round cpan Math::VecStat cpan Module::Build cpan Module::Implementation cpan Module::Pluggable cpan Module::Runtime cpan Mojo cpan Mozilla::CA cpan Net::DNS cpan Net::HTTP cpan Net::IMAP::Client cpan Net::IMAP::Simple cpan Net::SNMP # cpan Net::SSL # doesn't build and is obsolete # cpan Net::SSLeay # the SSLeay-stuff is done at the very beginning (s.a.) cpan Net::Server cpan NetAddr::IP cpan OLE::Storage_Lite cpan Object::Accessor cpan Object::Realize::Later cpan PDF::API2 # cpan PDL # fails in install: "can't write to symdb", weird. cpan PPITerm::UI PERL5LIB=".${PERL5LIB:+:$PERL5LIB}" cpan PPI::Document # required by PPIx::Regexp PERL5LIB=".${PERL5LIB:+:$PERL5LIB}" cpan Task::Weaken # required by PPIx::Regexp cpan PPIx::Regexp cpan Package::Constants cpan Package::DeprecationManager cpan Package::Stash cpan Package::Stash::XS cpan Params::Util cpan Params::Validate cpan Parse::RecDescent cpan PatchReader cpan Path::FindDev cpan Path::FindDev::Object cpan Path::IsDev cpan Path::Tiny cpan Pegex cpan Perl::Critic cpan Perl::Tidy # Plack - Perl Superglue for Web frameworks and Web Servers (PSGI toolkit) (Holy Moses, does anybody use this) # cpan Plack # Fails, since this is a vintage build, skip this showstopper too. cpan Pod::Coverage cpan Pod::LaTeX cpan Pod::Plainer cpan Pod::Spell cpan Probe::Perl cpan Readonly cpan Regexp::Common cpan Return::Value cpan Role::Tiny cpan Router::Simple cpan SVG cpan Set::IntSpan cpan Shell cpan Spreadsheet::ParseExcel cpan Starlink::AST cpan Statistics::Descriptive cpan Statistics::Distributions cpan Stream::Buffered cpan String::CRC32 cpan String::Format cpan Sub::Exporter cpan Sub::Exporter::Progressive cpan Sub::Install cpan Sub::Uplevel cpan Switch cpan Task::Weaken cpan Template cpan Template::Plugin::GD cpan Term::UI cpan Test::Deep cpan Test::Differences cpan Test::Exception cpan Test::Fatal cpan Test::Inter cpan Test::Most cpan Test::NoWarnings cpan Test::Number::Delta cpan Test::Object cpan Test::Output cpan Test::Pod cpan Test::Pod::Coverage cpan Test::Requires cpan Test::Script cpan Test::SharedFork cpan Test::SubCalls cpan Test::TCP cpan -f Test::Taint # test sometimes fail, because Test::More sets untainted environment variable TEST_ACTIVE cpan Test::Warn cpan Test::YAML cpan Text::CSV cpan Text::Diff cpan Text::Format cpan Text::Soundex cpan TheSchwartz cpan Tie::DBI cpan Tie::RDBM cpan Tie::Watch cpan Time::Date cpan Time::Period cpan -T Tk cpan Tree::DAG_Node cpan Try::Tiny cpan URI cpan Unix::Syslog cpan User::Identity cpan Version::Requirements cpan WWW::Dict::Leo::Org cpan WWW::Mechanize cpan WWW::RobotRules cpan XML::DOM cpan XML::LibXML cpan XML::LibXSLT cpan XML::NamespaceSupport cpan XML::Parser cpan XML::Parser::Lite cpan XML::Quote cpan XML::RegExp cpan XML::SAX cpan XML::SAX::Base cpan XML::SAX::Expat cpan XML::Simple cpan XML::Twig cpan XML::XPath cpan YAML cpan YAML::LibYAML cpan common::sense cpan inc::latest cpan install cpan local::lib cpan Apache::SOAP cpan Date::Manip ( cd $PREFIX/build test -e Donald-1.05.tar.gz || wget https://github.molgen.mpg.de/donald/Donald/archive/1.05.tar.gz -O Donald-1.05.tar.gz test -d Donald-1.05 || tar xf Donald-1.05.tar.gz cd Donald-1.05 cpan . ) # cpan PDL::Stats # don't let PDL creep in again (s.a.) ( cd $PREFIX/build test -e Pcap-0.02.tar.gz || cp /home/buczek/build/Pcap/Pcap-0.02.tar.gz . test -d Pcap-0.02 || tar xf Pcap-0.02.tar.gz cd Pcap-0.02 cpan . ) ( cd $PREFIX/build test -e rrdtool-1.6.0.tar.gz || wget https://oss.oetiker.ch/rrdtool/pub/rrdtool-1.6.0.tar.gz test -d rrdtool-1.6.0 || tar xf rrdtool-1.6.0.tar.gz cd rrdtool-1.6.0 ./configure --prefix $PREFIX make -j $(nproc) cd bindings/perl-shared/ cpan . cd ../perl-piped cpan . ) # the recent Net-SNMP from sourceforge is dropped from this package # Do bioperl last, because it doesn't declare all dependencies correctly # cpan Bio::Perl # cpan -T Bio::Biblio # "ERROR 11 Unable to connect to database [medline" instead of xml file from net cpan Bio::Coordinate # cpan Bio::Graphics::Browser2 # GBrowse - requires Bio::DB::Sam # cpan Bio::DB::Sam # Bio-SamTools 'Please enter the location of the bam.h and compiled libbam.a files' cpan -f XML::DOM::XPath # test fails , install anyway for Bio::FeatureIO cpan Bio::FeatureIO cpan Bio::Tools::EUtilities # Devel::IPerl - Perl language kernel for Jupyter, pulls also moose, takes ages to build -- nope, *NOT* in this package cpan Text::NSP # galonska 29.01.2018 -> helpdesk cpan Excel::Writer::XLSX # klages 20.03.2018, helpdesk # defeat "Can't locate Makefile.PL in @INC", when Build.PL is used PERL5LIB=".${PERL5LIB:+:$PERL5LIB}" cpan Convert::Morse # serious fun, kreitler cpan Math::Amoeba # Multidimensional Function Minimisation (oldie but goldie:), kreitler cpan Crypt::OpenSSL::PBKDF2 # some more crypto stuff, kreitler cpan Crypt::OpenSSL::AES cpan Crypt::Blowfish cpan Crypt::Blowfish_PP cpan Crypt::CAST5 cpan Crypt::DES cpan Crypt::TripleDES cpan Crypt::TripleDES::CBC cpan Crypt::IDEA cpan Crypt::Rijndael cpan Crypt::CBC cpan Crypt::MCrypt cpan OpenOffice::OODoc # The Open OpenDocument Connector # helpdesk Evgeny Muzychenko <muzychen@molgen.mpg.de> 01/10/19 # see https://bionanogenomics.com/support-page/bionano-solve/ # remaining dependencies cpan Config::Simple cpan DateTime::Format::Human::Duration exit
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