CellProfiler-3.1.5-0.build.sh

#! /bin/bash

PKG=CellProfiler
VERSION=3.1.5
BUILD=0
SRC=https://github.com/CellProfiler/CellProfiler/archive/v$VERSION.tar.gz

PREFIX=/pkg/$PKG-$VERSION-$BUILD
# PREFIX=/dev/shm/pkg/$PKG-$VERSION-$BUILD

PATH=/bin:/usr/bin:/usr/sbin:/usr/local/package/bin:/usr/local/bin
export PATH

set -xe
umask 022

BUILD_TMPDIR=/dev/shm/$PKG-$VERSION-$BUILD.build.tmp
test -d $BUILD_TMPDIR && rm -rf $BUILD_TMPDIR
mkdir -p $BUILD_TMPDIR/home
export TMPDIR=$BUILD_TMPDIR
export HOME=$BUILD_TMPDIR/home

exec </dev/null

mkdir -p $PREFIX
cat >$PREFIX/profile <<-EOF
	PATH=$PREFIX/bin:\$PATH
	PYTHONPATH=$PREFIX/lib/python2.7/site-packages
	LD_LIBRARY_PATH=$PREFIX/lib\${LD_LIBRARY_PATH:+:\$LD_LIBRARY_PATH}
	PKG_CONFIG_PATH=$PREFIX/lib/pkgconfig\${PKG_CONFIG_PATH:+:\$PKG_CONFIG_PATH}
	export PKG_CONFIG_PATH LD_LIBRARY_PATH PYTHONPATH
EOF
. $PREFIX/profile

BUILDDIR=$PREFIX/build

mkdir -p $BUILDDIR
cd $BUILDDIR

function at_plaininstall() {
  local dir=$1
  local tar=$2
  local url=$3
  (
    cd $BUILDDIR
    test -e $tar || wget $url
    test -n 'XWIPE' && rm -rf ./$dir
    test -d $dir || tar xvf $tar
    cd $dir
    ./configure --prefix=$PREFIX
    make -j $(nproc)
    make install
  )
}

function cm_plaininstall() {
  local dir=$1
  local tar=$2
  local url=$3
  local extra=$4
  (
    cd $BUILDDIR
    test -e $tar || wget $url
    test -n 'XWIPE' && rm -rf ./$dir
    test -d $dir || tar xvf $tar
    mkdir -p $dir/build
    cd $dir/build
    echo "# extra args: '$extra'"
    cmake .. \
      -DCMAKE_INSTALL_PREFIX=$PREFIX \
      -DCMAKE_COLOR_MAKEFILE=OFF \
      -DCMAKE_VERBOSE_MAKEFILE=ON \
      $extra
    make -j $(nproc)
    make install
  )
}

at_plaininstall \
  zeromq-4.2.2 \
  zeromq-4.2.2.tar.gz \
  https://github.com/zeromq/libzmq/releases/download/v4.2.2/zeromq-4.2.2.tar.gz

cm_plaininstall \
  vigra-1.11.1 \
  vigra-1.11.1-src.tar.gz \
  https://github.com/ukoethe/vigra/releases/download/Version-1-11-1/vigra-1.11.1-src.tar.gz \
  "-DVIGRANUMPY_INSTALL_DIR=$PYTHONPATH"

at_plaininstall \
  wxPython-src-3.0.2.0 \
  wxPython-src-3.0.2.0.tar.bz2 \
  https://sourceforge.net/projects/wxpython/files/wxPython/3.0.2.0/wxPython-src-3.0.2.0.tar.bz2

(
  cd $BUILDDIR/wxPython-src-3.0.2.0/wxPython
  python2.7 setup.py build
  python2.7 setup.py install --prefix $PREFIX
  # build leaves 2gig rubbish
  cd ..
  make clean
)

# 'the' CellProfiler
(
  test -e v$VERSION.tar.gz || wget $SRC
  test -n 'XWIPE' && rm -rf CellProfiler-$VERSION
  test -d CellProfiler-$VERSION || tar -xf v$VERSION.tar.gz

  cd CellProfiler-$VERSION
  python2.7 setup.py build
  python2.7 setup.py install --prefix $PREFIX
)

# exit 1 # don't close ...
exit