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executable file 67 lines (53 sloc) 1.33 KB
#! /bin/sh
set -xe
PKG=python
VERSION=3.6.6
BUILD=1
PREFIX=/pkg/$PKG-$VERSION-$BUILD
# PREFIX=/dev/shm/$PKG-$VERSION-$BUILD
exec </dev/null
mkdir -p $PREFIX
cat >$PREFIX/profile <<-EOF
PATH=$PREFIX/bin:\$PATH
EOF
. $PREFIX/profile
mkdir -p $PREFIX/build
cd $PREFIX/build
test -e Python-$VERSION.tar.xz || wget https://www.python.org/ftp/python/$VERSION/Python-$VERSION.tar.xz
test -d Python-$VERSION || tar xvf Python-$VERSION.tar.xz
cd Python-$VERSION
./configure \
--prefix=$PREFIX
make -j $(nproc)
make install
python3 -m ensurepip
pip3 install -I pip
pip3 install ipython[all]
pip3 install SciPy NumPy Matplotlib pandas SymPy nose statsmodels
pip3 install scikit-learn
pip3 install seaborn
pip3 install metaseq
pip3 install Mako
pip3 install meson
# Helpdesk 01/24/18 16:19, Sabrina Krakau
pip3 install cutadapt
#Helpdesk 03/26/18 14:19, Virginie Stanisla
pip3 install pygobject
# Blink1-lib 07/04/18 12:00, Niclas Hofmann
pip3 install blink1
# other popular packages
pip3 install python-bioformats
pip3 install umi-tools
pip3 install sphinx
pip3 install recommonmark
pip3 install fastcluster
pip3 install pydot
pip3 install pygraphviz
pip3 install deeptools
pip3 install HTSeq
pip3 install keras
# Alena 30.8.2018
pip3 install MotifScan
pip3 install MAmotif
# exit 1 # final test, inhibits 'closing' on success
exit