python-3.6.6-1.build.sh

#! /bin/sh

set -xe

PKG=python
VERSION=3.6.6
BUILD=1
PREFIX=/pkg/$PKG-$VERSION-$BUILD
# PREFIX=/dev/shm/$PKG-$VERSION-$BUILD

exec </dev/null

mkdir -p $PREFIX
cat >$PREFIX/profile <<-EOF
        PATH=$PREFIX/bin:\$PATH
EOF
. $PREFIX/profile

mkdir -p $PREFIX/build
cd $PREFIX/build

test -e Python-$VERSION.tar.xz || wget https://www.python.org/ftp/python/$VERSION/Python-$VERSION.tar.xz
test -d  Python-$VERSION       || tar xvf Python-$VERSION.tar.xz
cd Python-$VERSION
./configure \
        --prefix=$PREFIX
make -j $(nproc)
make install

python3 -m ensurepip
pip3 install -I pip

pip3 install ipython[all]
pip3 install SciPy NumPy Matplotlib pandas SymPy nose statsmodels
pip3 install scikit-learn
pip3 install seaborn
pip3 install metaseq
pip3 install Mako
pip3 install meson

# Helpdesk 01/24/18 16:19, Sabrina Krakau
pip3 install cutadapt

#Helpdesk 03/26/18 14:19, Virginie Stanisla
pip3 install pygobject

# Blink1-lib 07/04/18 12:00, Niclas Hofmann
pip3 install blink1

# other popular packages
pip3 install python-bioformats
pip3 install umi-tools
pip3 install sphinx
pip3 install recommonmark
pip3 install fastcluster
pip3 install pydot
pip3 install pygraphviz
pip3 install deeptools
pip3 install HTSeq
pip3 install keras

# Alena 30.8.2018
pip3 install MotifScan
pip3 install MAmotif

# exit 1 # final test, inhibits 'closing' on success
exit