relion-3.1.1-0.build.sh

#! /bin/sh

# COOKIE=$(mcookie|cut -c-8); grep -v V_GREP_ME $0 > /dev/shm/runme-$COOKIE.sh ; sleep 1; exec bash /dev/shm/runme-$COOKIE.sh
# TESTING=1

PKG=relion
VERSION=3.1.1
SRC=https://github.com/3dem/relion/archive/$VERSION.tar.gz
BUILD=0


PREFIX=/pkg/$PKG-$VERSION-$BUILD
if [ -n "$TESTING" ]; then PREFIX=/dev/shm/$PKG-$VERSION-$BUILD ; fi

set -xe
umask 022

BUILD_TMPDIR=/dev/shm/$PKG-$VERSION-$BUILD.build.tmp
test -d $BUILD_TMPDIR && ( chmod -R u+rwx $BUILD_TMPDIR || true ; rm -rf $BUILD_TMPDIR )
mkdir -p $BUILD_TMPDIR/home
export TMPDIR=$BUILD_TMPDIR
export HOME=$BUILD_TMPDIR/home

exec </dev/null

mkdir -p $PREFIX
cat >$PREFIX/profile <<-EOF
	PATH=$PREFIX/bin:\$PATH
	if [ -d $PREFIX/.compatlibs ]; then export LD_LIBRARY_PATH=$PREFIX/.compatlibs\${LD_LIBRARY_PATH:+:}\$LD_LIBRARY_PATH ; fi
EOF
. $PREFIX/profile

NPROC=$(( $(nproc) * 4 / 5 + 1 ))

BUILDDIR=$PREFIX/build

mkdir -p $BUILDDIR
cd $BUILDDIR

# Install an own fltk, relions cmake has problems honoring the output from "fltk-config --ldstaticflags".
# And when using the bundled version the rpath is set to the wrong location :/

FLTKVERSION=1.3.5
test -e fltk-$FLTKVERSION-source.tar.gz || wget --no-verbose https://www.fltk.org/pub/fltk/$FLTKVERSION/fltk-$FLTKVERSION-source.tar.gz
test -d fltk-$FLTKVERSION || tar -xf fltk-$FLTKVERSION-source.tar.gz
cd fltk-$FLTKVERSION

./configure \
  --prefix=$PREFIX \
  --enable-shared

make -j $NPROC
make install
rm -r $PREFIX/share/doc/fltk
cd ..

test -e $VERSION.tar.gz || wget --no-verbose $SRC
test -d $PKG-$VERSION || tar -xf $VERSION.tar.gz
cd $PKG-$VERSION


mkdir -p cmake_build
cd cmake_build
cmake \
  -DCMAKE_INSTALL_PREFIX=$PREFIX \
  -DCMAKE_COLOR_MAKEFILE=OFF \
  -DCMAKE_VERBOSE_MAKEFILE=ON \
  -DCMAKE_EXE_LINKER_FLAGS="$(fltk-config --ldflags)" \
  -DCUDA_TOOLKIT_ROOT_DIR=/pkg/cuda-10.2.89-1 \
  ..

make -j $NPROC
make install

exit