From a3671bcd228bba0373a8e7cbf2ec4370be0d6942 Mon Sep 17 00:00:00 2001
From: thomas <kreitler@molgen.mpg.de>
Date: Thu, 10 Oct 2024 10:43:54 +0200
Subject: [PATCH] apptainer: add version 1.3.4 and supporting tools

Included in the update are:
 - gocryptfs
 - fuse-overlayfs

These are used by apptainer when found in the system. This way
the functionality of apptainer is improved.

see:
  https://github.com/rfjakob/gocryptfs
  https://github.com/containers/fuse-overlayfs
---
 apptainer-1.3.4-0.build.sh | 94 ++++++++++++++++++++++++++++++++++++++
 1 file changed, 94 insertions(+)
 create mode 100755 apptainer-1.3.4-0.build.sh

diff --git a/apptainer-1.3.4-0.build.sh b/apptainer-1.3.4-0.build.sh
new file mode 100755
index 0000000..bb2dce8
--- /dev/null
+++ b/apptainer-1.3.4-0.build.sh
@@ -0,0 +1,94 @@
+#! /bin/sh
+
+# COOKIE=$(mcookie|cut -c-8); grep -v V_GREP_ME $0 > /dev/shm/runme-$COOKIE.sh ; sleep 0.3; exec bash /dev/shm/runme-$COOKIE.sh
+# TESTING=1
+
+set -xe
+umask 022
+
+PKG=apptainer
+VERSION=1.3.4
+BUILD=0
+
+PATH=/bin:/usr/bin:/usr/sbin:/usr/local/bin:/usr/local/package/bin
+PREFIX=/pkg/$PKG-$VERSION-$BUILD
+if [ -n "$TESTING" ]; then PREFIX=/scratch/local2/$PKG-$VERSION-$BUILD ; fi
+
+mkdir -p $PREFIX
+cat >$PREFIX/profile <<-EOF
+	PATH=$PREFIX/bin:\$PATH
+	if [ -d $PREFIX/.compatlibs ]; then export LD_LIBRARY_PATH=$PREFIX/.compatlibs\${LD_LIBRARY_PATH:+:\$LD_LIBRARY_PATH} ; fi
+EOF
+
+source $PREFIX/profile
+
+BUILD_TMPDIR=/scratch/local2/$PKG-$VERSION-$BUILD.$USER.build.tmp
+test -d $BUILD_TMPDIR && ( chmod -R u+rwx $BUILD_TMPDIR || true ; rm -rf $BUILD_TMPDIR )
+mkdir -p $BUILD_TMPDIR/home
+export TMPDIR=$BUILD_TMPDIR
+export HOME=$BUILD_TMPDIR/home
+
+BUILD=$PREFIX/build
+mkdir -p $BUILD
+
+cd $BUILD
+
+mkdir -p fuse-overlayfs
+cd fuse-overlayfs
+
+  # orig: https://github.com/containers/fuse-overlayfs/archive/refs/tags/v1.14.tar.gz
+  BEEHIVE=https://beehive.molgen.mpg.de/90e428d875f56e3ea3ecb83c3245a8c2/fuse-overlayfs-1.14.tar.gz
+
+  test -e fuse-overlayfs-1.14.tar.gz || wget --no-verbose $BEEHIVE
+  test -d fuse-overlayfs-1.14 || tar -xf fuse-overlayfs-1.14.tar.gz
+
+  cd fuse-overlayfs-1.14
+  ./autogen.sh
+  ./configure --prefix=$PREFIX
+  make
+
+  make install
+
+cd $BUILD
+
+mkdir -p gocryptfs
+cd gocryptfs
+
+  # orig: https://github.com/rfjakob/gocryptfs/releases/download/v2.4.0/gocryptfs_v2.4.0_src-deps.tar.gz
+  BEEHIVE=https://beehive.molgen.mpg.de/9c90fae342cf9170f188ce5d88b370a9/gocryptfs_v2.4.0_src-deps.tar.gz
+
+  test -e gocryptfs_v2.4.0_src-deps.tar.gz || wget --no-verbose $BEEHIVE
+  test -d gocryptfs_v2.4.0_src-deps || tar -xf gocryptfs_v2.4.0_src-deps.tar.gz
+
+  cd gocryptfs_v2.4.0_src-deps
+  ./build.bash
+  
+  cp -p gocryptfs $PREFIX/bin
+  install -D -m0755 gocryptfs $PREFIX/bin/gocryptfs
+  install -D -m0755 gocryptfs-xray/gocryptfs-xray $PREFIX/bin/gocryptfs-xray
+  install -D -m0644 Documentation/gocryptfs.1 $PREFIX/share/man/man1/gocryptfs.1
+  install -D -m0644 Documentation/gocryptfs-xray.1 $PREFIX/share/man/man1/gocryptfs-xray.1
+
+cd $BUILD
+
+mkdir -p apptainer
+cd apptainer
+
+  # orig: https://github.com/apptainer/apptainer/releases/download/v1.3.4/apptainer-1.3.4.tar.gz
+  BEEHIVE=https://beehive.molgen.mpg.de/21b56a1e30ddd5854a2f930db1c607b0/apptainer-1.3.4.tar.gz
+
+  test -e apptainer-$VERSION.tar.gz || wget --no-verbose $BEEHIVE
+  test -d apptainer-$VERSION || tar -xf apptainer-$VERSION.tar.gz
+
+  cd apptainer-$VERSION
+
+  ./mconfig -b ./build -p $PREFIX
+  mkdir -p build
+  cd build
+  make
+
+  make install
+
+cd $BUILD
+
+exit 0