From 8a1a6e92fa5bfe9cf88f3b502ef9af0d5338454a Mon Sep 17 00:00:00 2001 From: david Date: Fri, 27 Mar 2020 11:37:46 +0100 Subject: [PATCH] python-3.7.6: Add some python packages --- python-3.7.6-0.build.sh | 19 +++++++++++++++++++ 1 file changed, 19 insertions(+) diff --git a/python-3.7.6-0.build.sh b/python-3.7.6-0.build.sh index bac3d09..7874b45 100755 --- a/python-3.7.6-0.build.sh +++ b/python-3.7.6-0.build.sh @@ -209,6 +209,21 @@ pip3 install --prefix=$PREFIX louvain # monocle3 prep for Helene pip3 install --prefix=$PREFIX selenium # 19.7.19 Kreitler -> https://webxray.org/ pip3 install --prefix=$PREFIX cooltools # Maria Valieva 17.7.2019 pip3 install --prefix=$PREFIX gmpy # From viper context (Helpdesk Laura Glaser 9.8.2019) +pip3 install --prefix=$PREFIX tensorflow==2.0.1 # tensorflow-2.1.0 needs spezial libs and nightly version(2.2.0) dont +pip3 install --prefix=$PREFIX torch +pip3 install --prefix=$PREFIX torchvision +pip3 install --prefix=$PREFIX plotly +pip3 install --prefix=$PREFIX pyOpenCL +pip3 install --prefix=$PREFIX docopt +pip3 install --prefix=$PREFIX dbus-python +pip3 install --prefix=$PREFIX distro +pip3 install --prefix=$PREFIX notify +pip3 install --prefix=$PREFIX ply +pip3 install --prefix=$PREFIX threadpoolctl + +pip3 install --prefix=$PREFIX pyopengl +rm -rf ${PREFIX}/lib/python$PYTHONVER/site-packages/OpenGL/Tk +# creates error, so remove it # pip3 install --prefix=$PREFIX HiCExplorer # Would be a nice to have, but it likes to downgrade too much, pick some cherries pip3 install --prefix=$PREFIX HiCMatrix @@ -217,6 +232,10 @@ pip3 install --prefix=$PREFIX pyGenomeTracks pip3 install --prefix=$PREFIX python-bioformats pip3 install --prefix=$PREFIX jupyterlab # request Peter Arndt +pip3 install --prefix=$PREFIX jupyterlab-git +pip3 install --prefix=$PREFIX libxml2-python3 # required by several bee packages after swich to python3 +pip3 install --prefix=$PREFIX scour # https://github.molgen.mpg.de/mariux64/pkg-scripts/issues/98 +pip3 install --prefix=$PREFIX multiqc # try to load all packages, maybe we can see installation errors python3 -c 'help("modules")' > /dev/null