From 931ce7a464ae36cf7cc0aae60faf5563388adc8f Mon Sep 17 00:00:00 2001
From: thomas <kreitler@molgen.mpg.de>
Date: Wed, 24 Jan 2018 17:30:10 +0100
Subject: [PATCH] python-3.6.4-1: Rebuild with new packages due to user request

New packages:

  - cutadapt
  - python-bioformats
  - umi-tools
  - sphinx
  - recommonmark
  - fastcluster
  - pydot
  - pygraphviz
  - deeptools
  - HTSeq
  - keras
---
 python-3.6.4-1.build.sh | 56 +++++++++++++++++++++++++++++++++++++++++
 1 file changed, 56 insertions(+)
 create mode 100755 python-3.6.4-1.build.sh

diff --git a/python-3.6.4-1.build.sh b/python-3.6.4-1.build.sh
new file mode 100755
index 0000000..d4daa78
--- /dev/null
+++ b/python-3.6.4-1.build.sh
@@ -0,0 +1,56 @@
+#! /bin/sh
+
+set -xe
+
+PKG=python
+VERSION=3.6.4
+BUILD=1
+PREFIX=/pkg/$PKG-$VERSION-$BUILD
+
+exec </dev/null
+
+mkdir -p $PREFIX
+cat >$PREFIX/profile <<-EOF
+        PATH=$PREFIX/bin:\$PATH
+EOF
+. $PREFIX/profile
+
+mkdir -p $PREFIX/build
+cd $PREFIX/build
+
+test -e Python-$VERSION.tar.xz || wget https://www.python.org/ftp/python/$VERSION/Python-$VERSION.tar.xz
+test -d  Python-$VERSION       || tar xvf Python-$VERSION.tar.xz
+cd Python-$VERSION
+./configure \
+        --prefix=$PREFIX
+make -j $(nproc)
+make install
+
+python3 -m ensurepip
+pip3 install -I pip
+
+pip3 install ipython[all]
+pip3 install SciPy NumPy Matplotlib pandas SymPy nose
+pip3 install scikit-learn
+pip3 install seaborn
+pip3 install metaseq
+pip3 install Mako
+pip3 install meson
+
+# Helpdesk 01/24/18 16:19, Sabrina Krakau
+pip3 install cutadapt
+
+# other popular packages
+pip3 install python-bioformats
+pip3 install umi-tools
+pip3 install sphinx
+pip3 install recommonmark
+pip3 install fastcluster
+pip3 install pydot
+pip3 install pygraphviz
+pip3 install deeptools
+pip3 install HTSeq
+pip3 install keras
+
+# exit 1 # final test, inhibits 'closing' on success
+exit