From b96743caedf044cdf123b78e98615cf6e886193d Mon Sep 17 00:00:00 2001
From: Paul Menzel <pmenzel@molgen.mpg.de>
Date: Fri, 5 Jan 2018 13:05:55 +0100
Subject: [PATCH 1/2] python: Add version 3.6.4

[Announcement from December 19th, 2017][1]:

> On behalf of the Python development community and the Python 3.6
> release team, I am happy to announce the availability of Python 3.6.4,
> the fourth maintenance release of Python 3.6.  Detailed information
> about the changes made in 3.6.4 can be found in the change log here:
>
> https://docs.python.org/3.6/whatsnew/changelog.html#python-3-6-4-final

[1]: https://mail.python.org/pipermail/python-dev/2017-December/151389.html
---
 python-3.6.4-0.build.sh | 37 +++++++++++++++++++++++++++++++++++++
 1 file changed, 37 insertions(+)
 create mode 100755 python-3.6.4-0.build.sh

diff --git a/python-3.6.4-0.build.sh b/python-3.6.4-0.build.sh
new file mode 100755
index 0000000..b352a81
--- /dev/null
+++ b/python-3.6.4-0.build.sh
@@ -0,0 +1,37 @@
+#! /bin/sh
+
+set -xe
+
+PKG=python
+VERSION=3.6.4
+BUILD=0
+PREFIX=/pkg/$PKG-$VERSION-$BUILD
+
+exec </dev/null
+
+mkdir -p $PREFIX
+cat >$PREFIX/profile <<-EOF
+        PATH=$PREFIX/bin:\$PATH
+EOF
+. $PREFIX/profile
+
+mkdir -p $PREFIX/build
+cd $PREFIX/build
+
+test -e Python-$VERSION.tar.xz || wget https://www.python.org/ftp/python/$VERSION/Python-$VERSION.tar.xz
+test -d  Python-$VERSION       || tar xvf Python-$VERSION.tar.xz
+cd Python-$VERSION
+./configure \
+        --prefix=$PREFIX
+make -j $(nproc)
+make install
+
+python3 -m ensurepip
+pip3 install -I pip
+
+pip3 install ipython[all]
+pip3 install SciPy NumPy Matplotlib pandas SymPy nose
+pip3 install scikit-learn
+pip3 install seaborn
+pip3 install metaseq
+pip3 install Mako

From a143f9854e380127c6c3d3b55e115f307de82a35 Mon Sep 17 00:00:00 2001
From: Paul Menzel <pmenzel@molgen.mpg.de>
Date: Fri, 5 Jan 2018 13:10:28 +0100
Subject: [PATCH 2/2] python-3.6.4: Install Meson
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

Description [1]:

> Meson is an open source build system meant to be both extremely fast,
> and, even more importantly, as user friendly as possible.
>
> The main design point of Meson is that every moment a developer spends
> writing or debugging build definitions is a second wasted. So is every
> second spent waiting for the build system to actually start compiling
> code.

Unfortunately, MarIuX only ships Python 3.3, and it’s a pain to set up
Setuptools. Meson also requires the module *pathlib*, which is included
in the Python distribution since version 3.4.

So install Meson here, and adapt bee to use the package environment.

[1] [1] http://mesonbuild.com/index.html
---
 python-3.6.4-0.build.sh | 1 +
 1 file changed, 1 insertion(+)

diff --git a/python-3.6.4-0.build.sh b/python-3.6.4-0.build.sh
index b352a81..6367867 100755
--- a/python-3.6.4-0.build.sh
+++ b/python-3.6.4-0.build.sh
@@ -35,3 +35,4 @@ pip3 install scikit-learn
 pip3 install seaborn
 pip3 install metaseq
 pip3 install Mako
+pip3 install meson