From 15c63a98b714d3845e602dba883cbc9cca43a9b6 Mon Sep 17 00:00:00 2001
From: david <schrader@molgen.mpg.de>
Date: Wed, 28 Feb 2024 13:07:31 +0100
Subject: [PATCH 1/2] rstudio: copy of previous script

---
 rstudio-2023.12.1-402-0.build.sh | 71 ++++++++++++++++++++++++++++++++
 1 file changed, 71 insertions(+)
 create mode 100644 rstudio-2023.12.1-402-0.build.sh

diff --git a/rstudio-2023.12.1-402-0.build.sh b/rstudio-2023.12.1-402-0.build.sh
new file mode 100644
index 0000000..909dab2
--- /dev/null
+++ b/rstudio-2023.12.1-402-0.build.sh
@@ -0,0 +1,71 @@
+#! /bin/bash
+
+# use the debian build from rstudio site (Ubuntu 18+/Debian 10+)
+
+PKG=rstudio
+VERSION=2022.02.3-492
+VERSIONP=${VERSION/-/+} # just brilliant !
+BUILD=0
+
+PREFIX=/pkg/$PKG-$VERSION-$BUILD
+if [ -n "$TESTING" ]; then PREFIX=/dev/shm/$PKG-$VERSION-$BUILD ; fi
+
+set -xe
+umask 022
+
+BUILD_TMPDIR=/dev/shm/$PKG-$VERSION-$BUILD.$USER.build.tmp
+test -d $BUILD_TMPDIR && ( chmod -R u+rwx $BUILD_TMPDIR || true ; rm -rf $BUILD_TMPDIR )
+mkdir -p $BUILD_TMPDIR/home
+export TMPDIR=$BUILD_TMPDIR
+export HOME=$BUILD_TMPDIR/home
+
+#       mind the PATH ...
+# ----------------------------
+#  it should work with:
+#      prun R4 rstudio
+#      xfce launcher
+#      own R on the path
+
+mkdir -p $PREFIX
+cat >$PREFIX/profile <<-EOF
+	PATH=$PREFIX/bin:\$PATH:/usr/local/package/bin
+	if [ -d $PREFIX/.compatlibs ]; then export LD_LIBRARY_PATH=$PREFIX/.compatlibs\${LD_LIBRARY_PATH:+:}\$LD_LIBRARY_PATH ; fi
+EOF
+. $PREFIX/profile
+
+BUILD=$PREFIX/build
+
+mkdir -p $BUILD
+cd $BUILD
+
+# orig: https://download1.rstudio.org/desktop/bionic/amd64/rstudio-2022.02.3-492-amd64-debian.tar.gz
+BEEHIVE=https://beehive.molgen.mpg.de/f68c6713864cc12967a7414ab6040e1f/rstudio-2022.02.3-492-amd64-debian.tar.gz
+
+test -e rstudio-$VERSION-amd64-debian.tar.gz  || wget -nv $BEEHIVE
+test -d rstudio-$VERSIONP  || tar -xf rstudio-$VERSION-amd64-debian.tar.gz
+
+mv -v rstudio-$VERSIONP/* ..
+
+cat >$PREFIX/bin/rstudio-nv <<-'EOF'
+	#! /bin/bash
+
+	# This allows using rstudio on a compute server, when the users machine
+	# has the nvidia driver loaded and rstudio gets confused.
+	# Drawback, this only works if not part of a ssh hopp along chain.
+
+	if [ -n "$SSH_CLIENT" ]; then
+	  REMOTEIP=${SSH_CLIENT%% *}
+	  MXGFX=$(ssh $REMOTEIP readlink -f /node/usr_share_mxgfx | grep nvidia)
+	  if [ -n "$MXGFX" ]; then
+	    echo "# offering $MXGFX to desktop client..."
+	    LD_LIBRARY_PATH=$MXGFX/lib${LD_LIBRARY_PATH:+:}$LD_LIBRARY_PATH
+	    export LD_LIBRARY_PATH
+	  fi
+	fi
+
+	exec rstudio "${@+$@}"
+EOF
+
+chmod +x $PREFIX/bin/rstudio-nv
+
+exit

From 5a21b270a850abc090fc676a97f6cfde87df453b Mon Sep 17 00:00:00 2001
From: david <schrader@molgen.mpg.de>
Date: Wed, 28 Feb 2024 14:10:39 +0100
Subject: [PATCH 2/2] rstudio: update to version 2023.12.1

Abeera ask for new highlighting feature
---
 rstudio-2023.12.1-402-0.build.sh | 14 ++++++++------
 1 file changed, 8 insertions(+), 6 deletions(-)
 mode change 100644 => 100755 rstudio-2023.12.1-402-0.build.sh

diff --git a/rstudio-2023.12.1-402-0.build.sh b/rstudio-2023.12.1-402-0.build.sh
old mode 100644
new mode 100755
index 909dab2..b005c2c
--- a/rstudio-2023.12.1-402-0.build.sh
+++ b/rstudio-2023.12.1-402-0.build.sh
@@ -1,14 +1,14 @@
 #! /bin/bash
 
-# use the debian build from rstudio site (Ubuntu 18+/Debian 10+)
+# use the debian build from rstudio site (Ubuntu 20+/Debian 11+)
 
 PKG=rstudio
-VERSION=2022.02.3-492
+VERSION=2023.12.1-402
 VERSIONP=${VERSION/-/+} # just brilliant !
 BUILD=0
 
 PREFIX=/pkg/$PKG-$VERSION-$BUILD
-if [ -n "$TESTING" ]; then PREFIX=/dev/shm/$PKG-$VERSION-$BUILD ; fi
+if [ -n "$TESTING" ]; then PREFIX=/scratch/local2/$PKG-$VERSION-$BUILD ; fi
 
 set -xe
 umask 022
@@ -38,13 +38,15 @@ BUILD=$PREFIX/build
 mkdir -p $BUILD
 cd $BUILD
 
-# orig: https://download1.rstudio.org/desktop/bionic/amd64/rstudio-2022.02.3-492-amd64-debian.tar.gz
-BEEHIVE=https://beehive.molgen.mpg.de/f68c6713864cc12967a7414ab6040e1f/rstudio-2022.02.3-492-amd64-debian.tar.gz
+# orig: https://download1.rstudio.org/electron/focal/amd64/rstudio-2023.12.1-402-amd64-debian.tar.gz
+BEEHIVE=https://beehive.molgen.mpg.de/205ead7b954470207e8cdb6614d68172/rstudio-2023.12.1-402-amd64-debian.tar.gz
 
 test -e rstudio-$VERSION-amd64-debian.tar.gz  || wget -nv $BEEHIVE
 test -d rstudio-$VERSIONP  || tar -xf rstudio-$VERSION-amd64-debian.tar.gz
 
-mv -v rstudio-$VERSIONP/* ..
+mkdir ${PREFIX}/bin
+
+mv -v rstudio-$VERSIONP/* ../bin
 
 cat >$PREFIX/bin/rstudio-nv <<-'EOF'
 	#! /bin/bash