diff --git a/R_workshop.2.Rmd b/R_workshop.2.Rmd
index 18ea3e5..542c3a2 100644
--- a/R_workshop.2.Rmd
+++ b/R_workshop.2.Rmd
@@ -2,14 +2,14 @@
title: "R Workshop -- Day 2"
author: "Franziska Metge"
output:
- pdf_document: default
html_document: default
+ pdf_document: default
---
```{r "setup", include=FALSE}
require("knitr")
-opts_knit$set(root.dir = "~/bit_R_workshop/")
+opts_knit$set(root.dir = "~/bit_R_workshop")
```
@@ -571,6 +571,7 @@ pheatmap(data_subset)
```{r, eval = TRUE, echo = FALSE}
+library(pheatmap)
pheatmap(as.matrix(airway.D[1:300, -1]), scale = 'row')
```
diff --git a/R_workshop.2.html b/R_workshop.2.html
index 16fc492..b5f1c61 100644
--- a/R_workshop.2.html
+++ b/R_workshop.2.html
@@ -1092,7 +1092,6 @@
Heatmap
# create heatmap using pheatmap
pheatmap(data_subset)
-
Hands On
diff --git a/R_workshop.Rmd b/R_workshop.Rmd
index 5eeaeb8..d0f1fbb 100644
--- a/R_workshop.Rmd
+++ b/R_workshop.Rmd
@@ -1,8 +1,8 @@
---
title: "R Workshop -- Introduction to R"
output:
- pdf_document: default
html_document: default
+ pdf_document: default
fontsize: 8pt
---
diff --git a/R_workshop.html b/R_workshop.html
index e93e064..d8b6dc7 100644
--- a/R_workshop.html
+++ b/R_workshop.html
@@ -749,11 +749,11 @@ Repeat
Random numbers
# random numbers from a normal distribution
rnorm(n = 5, mean = 5, sd = 1)
-## [1] 3.167047 4.887193 4.198460 6.396455 5.599182
+## [1] 4.033038 6.873742 5.722433 4.201389 3.973988
# random numbers from a uniform distribution
runif(n = 5, min = 1, max = 5)
-## [1] 3.728042 2.285100 1.705257 1.207352 2.309108
+## [1] 2.510205 3.595308 4.570523 2.297213 4.691339
Other distributions in R include:
- Normal:
rnorm(n, mean, sd)
diff --git a/R_workshop.log b/R_workshop.log
index c219dda..b4fc24c 100644
--- a/R_workshop.log
+++ b/R_workshop.log
@@ -1,722 +1,2 @@
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