From bfa76e07ea8f6c6f34b3aeeb0d4505d809973c7f Mon Sep 17 00:00:00 2001 From: ngerstner Date: Mon, 26 Feb 2024 16:52:06 +0100 Subject: [PATCH] update readme --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 648f152..fe57f10 100644 --- a/README.md +++ b/README.md @@ -17,7 +17,7 @@ Differential gene expression (DE) analysis between mice treated with a vehicle a Differential expression networks were calculated with KiMONo and DiffGRN. As a prior for the network analysis, we used [Funcoup](https://funcoup5.scilifelab.se/search/) which includes functional associations between genes and their respective proteins from various evidence types. Scripts that were used to calculate the expression networks on control and DEX treated samples respectively, can be found in the folder [02_CoExp_Kimono](02_CoExp_Kimono/). -During the post-processing of the networks inferred by KiMONo, we filtered out interactions with beta or r-squared values below a certain threshold and inferred a *differential gene expression network* for each brain region in our dataset using the DiffGRN [cite?] approach. Scripts used for the post-processing can be found in the folder [03_CoExp_Analysis](03_CoExp_Analysis/). +During the post-processing of the networks inferred by KiMONo, we filtered out interactions with beta or r-squared values below a certain threshold and inferred a *differential gene expression network* for each brain region in our dataset using the DiffGRN approach. Scripts used for the post-processing can be found in the folder [03_CoExp_Analysis](03_CoExp_Analysis/). ## 2. Manuscript plots