diff --git a/scripts/8_removal_of_outliers_detect_batch_effects.Rmd b/scripts/8_removal_of_outliers_detect_batch_effects.Rmd index 6bbf7ec..8d176f6 100644 --- a/scripts/8_removal_of_outliers_detect_batch_effects.Rmd +++ b/scripts/8_removal_of_outliers_detect_batch_effects.Rmd @@ -46,7 +46,7 @@ start_time <- Sys.time() ```{r setup, include=FALSE} -source("../data/calculate_pc_cutoff.R") # source function for determining PC cutoff +source("../data/Calculate_PC_Cutoff.R") # source function for determining PC cutoff needed_packages <- c("BiocManager", "dplyr", "knitr", "rmarkdown", "tibble", "ggplot2", "ggrepel", "broom", "gplots", "tidyr", "sva", "methods") user_choices <- readRDS("../data/user_choices.rds")